# Generated by roxygen2: do not edit by hand

S3method(clusterTree,default)
S3method(clusterTree,list)
S3method(normalizeCount,HiCDOCDataSet)
S3method(normalizeCount,HiCDOCDataSetList)
S3method(normalizeCount,default)
S3method(normalizeCount,list)
S3method(print,treeTest)
S3method(summary,treeTest)
export(HiC2Tree)
export(HiCDOCDataSet)
export(clusterTree)
export(normalizeCount)
export(treediff)
import(testthat)
importFrom(BiocGenerics,cbind)
importFrom(HiCDOC,HiCDOCDataSetFromCool)
importFrom(HiCDOC,HiCDOCDataSetFromHiC)
importFrom(HiCDOC,HiCDOCDataSetFromHiCPro)
importFrom(HiCDOC,HiCDOCDataSetFromTabular)
importFrom(InteractionSet,interactions)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(adjclust,adjClust)
importFrom(adjclust,select)
importFrom(csaw,normOffsets)
importFrom(data.table,as.data.table)
importFrom(data.table,setnames)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(limma,squeezeVar)
importFrom(methods,new)
importFrom(purrr,reduce)
importFrom(reshape2,colsplit)
importFrom(rlang,.data)
importFrom(stats,cophenetic)
importFrom(stats,hclust)
importFrom(stats,pt)