if (require("rstanarm") && require("BayesFactor") && require("testthat")) { # bayesfactor_restricted data.frame --------------------------------------- test_that("bayesfactor_restricted df", { prior <- data.frame( X = distribution_normal(100), X1 = c(distribution_normal(50),distribution_normal(50)), X3 = c(distribution_normal(80),distribution_normal(20)) ) posterior <- data.frame( X = distribution_normal(100, .4, .2), X1 = distribution_normal(100, -.2, .2), X3 = distribution_normal(100, .2) ) hyps <- c( "X > X1 & X1 > X3", "X > X1" ) bfr <- bayesfactor_restricted(posterior, hypothesis = hyps, prior = prior) testthat::expect_equal(bfr$Prior_prob, c(0.2, 0.5), tolerance = 0.1) testthat::expect_equal(bfr$Posterior_prob, c(0.31, 1), tolerance = 0.1) testthat::expect_equal(log(bfr$BF), c(0.43, 0.69), tolerance = 0.1) testthat::expect_equal(bfr$BF, bfr$Posterior_prob / bfr$Prior_prob, tolerance = 0.1) testthat::expect_error(bayesfactor_restricted(posterior, prior, hypothesis = "Y < 0")) }) # bayesfactor_restricted RSTANARM ----------------------------------------- test_that("bayesfactor_restricted RSTANARM", { testthat::skip_on_cran() library(rstanarm) fit_stan <- stan_glm(mpg ~ wt + cyl + am, data = mtcars, refresh = 0) hyps <- c( "am > 0 & cyl < 0", "cyl < 0", "wt - cyl > 0" ) set.seed(444) fit_p <- unupdate(fit_stan) bfr1 <- bayesfactor_restricted(fit_stan, prior = fit_p, hypothesis = hyps) set.seed(444) bfr2 <- bayesfactor_restricted(fit_stan, hypothesis = hyps) testthat::expect_equal(bfr1, bfr2) }) }