#!/bin/bash set -e ########################Workarounds and Hacks ################################# # FIXME this is a workaround for a bug in psycopg2 2.6 (required by pegasus) # see e.g. https://stackoverflow.com/questions/47044854/error-installing-psycopg2-2-6-2 # We should ask pegasus to update their requirement to psycopg2 2.7 which fixes # this bug echo -e "Trying to get rid of pg_config" sudo apt-get -y purge libpq-dev echo -e "Making sure it is really gone..." if [ -n "`which pg_config`" ] then echo -e "...still here:" which pg_config sudo rm -f `which pg_config` else echo -e "...seems gone" fi # Fixme replace with apt-get from intel repo # get library needed to build documentation wget_opts="-c --passive-ftp --no-check-certificate --tries=5 --timeout=30" primary_url="https://www.atlas.aei.uni-hannover.de/~dbrown/cea5bd67440f6c3195c555a388def3cc6d695a5c/x86_64/composer_xe_2015.0.090" p="libmkl_rt.so" test -r $p || wget $wget_opts ${primary_url}/${p} chmod +x $p # LAL extra data files # FIXME, should be a way to make reduced package (with subset of data files) GIT_LFS_SKIP_SMUDGE=1 git clone https://git.ligo.org/lscsoft/lalsuite-extra cd lalsuite-extra git lfs pull -I "data/lalsimulation/SEOBNRv2ROM_*.dat" git lfs pull -I "data/lalsimulation/*ChirpTime*.dat" git lfs pull -I "data/lalsimulation/SEOBNRv4ROM_v2.0.hdf5" mv data/lalsimulation/* ../ cd ../ ############################################################################### echo -e ">> [`date`] upgrading setuptools and pip" pip install --upgrade setuptools pip echo -e ">> [`date`] installing requirements" pip install -r requirements.txt echo -e ">> [`date`] installing companion components" pip install -r companion.txt echo -e ">> [`date`] installing mpi4py" pip install mpi4py echo -e ">> [`date`] installing pycbc" pip install .