environment.yml
name: mdda
# channels priority
# see https://bioconda.github.io/
# conda-forge has highest priority
channels:
- defaults
- bioconda
- conda-forge
dependencies:
- python=3.11
- pip
- jupyterlab=4
- numpy
- scipy
- pandas
- matplotlib
- plotly
- pyyaml
- biopython
- pyarrow
- jupyterlab_execute_time
# linters and more
- pylint
- pycodestyle
- pydocstyle
- black
- pip:
- upsetplot # https://upsetplot.readthedocs.io/en/stable/index.html
- pysankeybeta # https://github.com/pierre-sassoulas/pySankey
- watermark