project:
  type: book
  output-dir: docs

book:
  title: "Computational Causal Inference for Applied Researchers"
  subtitle: "A Practical Guide for Epidemiologists and Biostatisticians"
  author:
    - name: "Miguel Angel Luque-Fernandez"
      affiliation: "Dpto. de Estadistica e Investigacion Operativa, Universidad de Granada"
      email: "mluquefe@ugr.es"
      url: "https://migariane.github.io"
    - name: "Matthew J. Smith"
      affiliation: "London School of Hygiene & Tropical Medicine"
  date: "2026"
  date-format: "YYYY"
  description: |
    This book introduces the concepts of causal inference from a beginner's perspective
    and leads the interested reader to numerous approaches to answer counterfactual questions
    using computational methods in R and Stata.
  cover-image: figures/logo.png
  favicon: figures/logo.png
  repo-url: https://github.com/migariane/Causal-Inference-Book
  repo-actions: [edit, issue, source]
  sharing: [twitter, linkedin]
  downloads: []
  search: true
  page-footer:
    left: |
      Computational Causal Inference for Applied Researchers, M.A. Luque-Fernandez & M.J. Smith
    right: |
      © 2026 Universidad de Granada

  chapters:
    - index.qmd
    - part: "Foundations"
      chapters:
        - chapters/chapter1/index.qmd
        - chapters/chapter2/index.qmd
    - part: "G-Methods"
      chapters:
        - chapters/chapter3/index.qmd
        - chapters/chapter4/index.qmd
    - part: "Advanced Methods"
      chapters:
        - chapters/chapter5/index.qmd
        - chapters/chapter6/index.qmd
        - chapters/chapter7/index.qmd
    - part: "Sensitivity Analysis & Discussion"
      chapters:
        - chapters/chapter8/index.qmd
        - chapters/chapter9/index.qmd
    - references.qmd

bibliography: references.bib
csl: apa.csl

language:
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  code-tools-hide-all-code: "Hide all code"
  code-summary: "Show the code"

crossref:
  lst-title: "Listing"
  lst-prefix: "Listing"
  chapters: true

format:
  html:
    lang: en
    theme: cosmo
    css: styles.css
    toc: true
    toc-depth: 3
    number-sections: true
    number-depth: 3
    html-math-method: mathjax
    code-fold: true
    code-summary: "Show the code"
    code-tools:
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      toggle: true
      caption: "Code"
    code-copy: true
    code-overflow: wrap
    smooth-scroll: true
    fig-align: center
    fig-width: 7
    fig-height: 5
    base-url: /Causal-Inference-Book/
    include-in-header:
      text: |
        <script>
        MathJax = {
          tex: {
            macros: {
              btheta: "\\boldsymbol{\\theta}",
              bbeta: "\\boldsymbol{\\beta}",
              bmu: "\\boldsymbol{\\mu}",
              bSigma: "\\boldsymbol{\\Sigma}",
              bx: "\\mathbf{x}",
              bX: "\\mathbf{X}",
              by: "\\mathbf{y}",
              bY: "\\mathbf{Y}",
              bU: "\\mathbf{U}",
              E: "\\mathbb{E}",
              Var: ["\\operatorname{Var}"],
              Cov: ["\\operatorname{Cov}"],
              Corr: ["\\operatorname{Corr}"],
              iid: "\\stackrel{\\text{i.i.d.}}{\\sim}",
              tendD: "\\stackrel{\\mathcal{D}}{\\longrightarrow}",
              reals: "\\mathbb{R}",
              PP: "\\mathbb{P}",
              P: "\\mathbb{P}",
              I: "\\mathbb{I}",
              A: "\\mathbb{A}",
              SE: ["\\operatorname{SE}"],
              SD: ["\\operatorname{SD}"],
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              argmin: ["\\operatorname{argmin}"],
              logit: ["\\operatorname{logit}"],
              expit: ["\\operatorname{expit}"],
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              Pr: ["\\operatorname{Pr}"],
              indep: "\\perp\\!\\!\\!\\perp"
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