Release notes for all past releases are available in the ['Releases' section](https://github.com/GPflow/GPflow/releases) of the GPflow GitHub Repo. [HOWTO_RELEASE.md](HOWTO_RELEASE.md) explains just that. # Release x.y.z (template for future releases) ## Breaking Changes * * ## Known Caveats * * * ## Major Features and Improvements * * ## Bug Fixes and Other Changes * * * ## Thanks to our Contributors This release contains contributions from: , , , , , # Release 2.6.0 (next upcoming release in progress) ## Breaking Changes * All likelihood methods now take an extra `X` argument. If you have written custom likelihoods or you have custom code calling likelihoods directly you will need to add this extra argument. * On the `CGLB` model `xnew` parameters have changed name to `Xnew`, to be consistent with the other models. * On the `GPLVM` model the variance returned by `predict_f` with `full_cov=True` has changed shape from `[batch..., N, N, P]` to `[batch..., P, N, N]` to be consistent with the other models. * `gpflow.likelihoods.Gaussian.DEFAULT_VARIANCE_LOWER_BOUND` has been replaced with `gpflow.likelihoods.scalar_continuous.DEFAULT_LOWER_BOUND`. * Change to `InducingVariables` API. `InducingVariables` must now have a `shape` property. * `gpflow.experimental.check_shapes.get_shape.register` has been replaced with `gpflow.experimental.check_shapes.register_get_shape`. * `check_shapes` will, no longer automatically wrap shape checking in `tf.compat.v1.flags.tf_decorator.make_decorator`. This is likely to affect you if you use `check_shapes` with Keras custom models. If you require the decorator you can manually enable it with `check_shapes(..., tf_decorator=True)`. ## Known Caveats * Shape checking is now, by default, disabled within `tf.function`. Use `set_enable_check_shapes` to change this behaviour. ## Major Features and Improvements * Improved handling of variable noise - All likelihood methods now take an `X` argument, allowing you to easily implement heteroscedastic likelihoods. - The `Gaussian` likelihood can now be parametrized by either a `variance` or a `scale` - Some existing likelihoods can now take a function (of X) instead of a parameter, allowing them to become heteroscedastic. The parameters are: - `Gaussian` `variance` - `Gaussian` `scale` - `StudentT` `scale` - `Gamma` `shape` - `Beta` `scale` - The `GPR` and `SGPR` can now be configured with a custom Gaussian likelihood, allowing you to make them heteroscedastic. - See the updated [notebook](https://gpflow.github.io/GPflow/2.6.0/notebooks/advanced/varying_noise.html). * `gpflow.experimental.check_shapes` - Can now be in three different states - ENABLED, EAGER_MODE_ONLY, and DISABLE. - Now support multiple variable-rank dimensions at the same time, e.g. `cov: [n..., n...]`. - Now uses custom function `register_get_shape` instead of `get_shape.register`, for better compatibility with TensorFlow. ## Bug Fixes and Other Changes * * * * Add support for Apple Silicon Macs (`arm64`) via the `tensorflow-macos` dependency. (#1850) ## Thanks to our Contributors This release contains contributions from: jesnie, corwinpro # Release 2.5.2 This release fixes a performance regression introduced in `2.5.0`. `2.5.0` used features of Python that `tensorfow < 2.9.0` do not know how to compile, which negatively impacted performance. ## Bug Fixes and Other Changes * Fixed some bugs that prevented TensorFlow compilation and had negative performance impact. (#1882) * Various improvements to documentation. (#1875, #1866, #1877, #1879) ## Thanks to our Contributors This release contains contributions from: jesnie # Release 2.5.1 Fix problem with release process of 2.5.0. ## Bug Fixes and Other Changes * Fix bug in release process. ## Thanks to our Contributors This release contains contributions from: jesnie # Release 2.5.0 The focus of this release has mostly been bumping the minimally supported versions of Python and TensorFlow; and development of `gpflow.experimental.check_shapes`. ## Breaking Changes * Dropped support for Python 3.6. New minimum version is 3.7. (#1803, #1859) * Dropped support for TensorFlow 2.2 and 2.3. New minimum version is 2.4. (#1803) * Removed sub-package `gpflow.utilities.utilities`. It was scheduled for deletion in `2.3.0`. Use `gpflow.utilities` instead. (#1804) * Removed method `Likelihood.predict_density`, which has been deprecated since March 24, 2020. (#1804) * Removed property `ScalarLikelihood.num_gauss_hermite_points`, which has been deprecated since September 30, 2020. (#1804) ## Known Caveats * Further improvements to type hints - this may reveal new problems in your code-base if you use a type checker, such as `mypy`. (#1795, #1799, #1802, #1812, #1814, #1816) ## Major Features and Improvements * Significant work on `gpflow.experimental.check_shapes`. - Support anonymous dimensions. (#1796) - Add a hook to let the user register shapes for custom types. (#1798) - Support `Optional` values. (#1797) - Make it configurable. (#1810) - Add accesors for setting/getting previously applied checks. (#1815) - Much improved error messages. (#1822) - Add support for user notes on shapes. (#1836) - Support checking all elements of collections. (#1840) - Enable stand-alone shape checking, without using a decorator. (#1845) - Support for broadcasts. (#1849) - Add support for checking the shapes of intermediate computations. (#1853) - Support conditional shapes. (#1855) * Significant speed-up of the GPR posterior objects. (#1809, #1811) * Significant improvements to documentation. Note the new home page: https://gpflow.github.io/GPflow/index.html (#1828, #1829, #1830, #1831, #1833, #1841, #1842, #1856, #1857) ## Bug Fixes and Other Changes * Minor improvement to code clarity (variable scoping) in SVGP model. (#1800) * Improving mathematical formatting in docs (SGPR derivations). (#1806) * Allow anisotropic kernels to have negative length-scales. (#1843) ## Thanks to our Contributors This release contains contributions from: ltiao, uri.granta, frgsimpson, st--, jesnie # Release 2.4.0 This release mostly focuses on make posterior objects useful for Bayesian Optimisation. It also adds a new `experimetal` sub-package, with a tool for annotating tensor shapes. ## Breaking Changes * Slight change to the API of custom posterior objects. `gpflow.posteriors.AbstractPosterior._precompute` no longer must return an `alpha` and an `Qinv` - instead it returns any arbitrary tuple of `PrecomputedValue`s. Correspondingly `gpflow.posteriors.AbstractPosterior._conditional_with_precompute` should no longer try to access `self.alpha` and `self.Qinv`, but instead is passed the tuple of tensors returned by `_precompute`, as a parameter. (#1763, #1767) * Slight change to the API of inducing points. You should no longer override `gpflow.inducing_variables.InducingVariables.__len__`. Override `gpflow.inducing_variables.InducingVariables.num_inducing` instead. `num_inducing` should return a `tf.Tensor` which is consistent with previous behaviour, although the type previously was annotated as `int`. `__len__` has been deprecated. (#1766, #1792) ## Known Caveats * Type hints have been added in several places - this may reveal new problems in your code-base if you use a type checker, such as `mypy`. (#1766, #1769, #1771, #1773, #1775, #1777, #1780, #1783, #1787, #1789) ## Major Features and Improvements * Add new posterior class to enable faster predictions from the VGP model. (#1761) * VGP class bug-fixed to work with variable-sized data. Note you can use `gpflow.models.vgp.update_vgp_data` to ensure variational parameters are updated sanely. (#1774). * All posterior classes bug-fixed to work with variable data sizes, for Bayesian Optimisation. (#1767) * Added `experimental` sub-package for features that are still under developmet. * Added `gpflow.experimental.check_shapes` for checking tensor shapes. (#1760, #1768, #1782, #1785, #1788) ## Bug Fixes and Other Changes * Make `dataclasses` dependency conditional at install time. (#1759) * Simplify calculations of some `predict_f`. (#1755) ## Thanks to our Contributors This release contains contributions from: jesnie, tmct, joacorapela # Release 2.3.1 This is a bug-fix release, primarily for the GPR posterior object. ## Bug Fixes and Other Changes * GPR posterior * Fix the calculation in the GPR posterior object (#1734). * Fixes leading dimension issues with `GPRPosterior._conditional_with_precompute()` (#1747). * Make `gpflow.optimizers.Scipy` able to handle unused / unconnected variables. (#1745). * Build * Fixed broken CircleCi build (#1738). * Update CircleCi build to use next-gen Docker images (#1740). * Fixed broken triggering of docs generation (#1744). * Make all slow tests depend on fast tests (#1743). * Make `make dev-install` also install the test requirements (#1737). * Documentation * Fixed broken link in `README.md` (#1736). * Fix broken build of `cglb.ipynb` (#1742). * Add explanation of how to run notebooks locally (#1729). * Fix formatting in notebook on Heteroskedastic Likelihood (#1727). * Fix broken link in introduction (#1718). * Test suite * Amends `test_gpr_posterior.py` so it will cover leading dimension uses. ## Thanks to our Contributors This release contains contributions from: st--, jesnie, johnamcleod, Andrew878 # Release 2.3.0 ## Major Features and Improvements * Refactor posterior base class to support other model types. (#1695) * Add new posterior class to enable faster predictions from the GPR/SGPR models. (#1696, #1711) * Construct Parameters from other Parameters and retain properties. (#1699) * Add CGLB model (#1706) ## Bug Fixes and Other Changes * Fix unit test failure when using TensorFlow 2.5.0 (#1684) * Upgrade black formatter to version 20.8b1 (#1694) * Remove erroneous DeprecationWarnings (#1693) * Fix SGPR derivation (#1688) * Fix tests which fail with TensorFlow 2.6.0 (#1714) ## Thanks to our Contributors This release contains contributions from: johnamcleod, st--, Andrew878, tadejkrivec, awav, avullo # Release 2.2.1 Bugfix for creating the new posterior objects with `PrecomputeCacheType.VARIABLE`. # Release 2.2.0 The main focus of this release is the new "Posterior" object introduced by PR #1636, which allows for a significant speed-up of post-training predictions with the `SVGP` model (partially resolving #1599). * For end-users, by default nothing changes; see Breaking Changes below if you have written your own _implementations_ of `gpflow.conditionals.conditional`. * After training an `SVGP` model, you can call `model.posterior()` to obtain a Posterior object that precomputes all quantities not depending on the test inputs (e.g. Choleskty of Kuu), and provides a `posterior.predict_f()` method that reuses these cached quantities. `model.predict_f()` computes exactly the same quantities as before and does **not** give any speed-up. * `gpflow.conditionals.conditional()` forwards to the same "fused" code-path as before. ## Breaking Changes * `gpflow.conditionals.conditional.register` is deprecated and should not be called outside of the GPflow core code. If you have written your own implementations of `gpflow.conditionals.conditional()`, you have two options to use your code with GPflow 2.2: 1. Temporary work-around: Instead of `gpflow.models.SVGP`, use the backwards-compatible `gpflow.models.svgp.SVGP_deprecated`. 2. Convert your conditional() implementation into a subclass of `gpflow.posteriors.AbstractPosterior`, and register `get_posterior_class()` instead (see the "Variational Fourier Features" notebook for an example). ## Known Caveats * The Posterior object is currently only available for the `SVGP` model. We would like to extend this to the other models such as `GPR`, `SGPR`, or `VGP`, but this effort is beyond what we can currently provide. If you would be willing to contribute to those efforts, please get in touch! * The Posterior object does not currently provide the `GPModel` convenience functions such as `predict_f_samples`, `predict_y`, `predict_log_density`. Again, if you're willing to contribute, get in touch! ## Thanks to our Contributors This release contains contributions from: stefanosele, johnamcleod, st-- # Release 2.1.5 ## Known Caveats * GPflow requires TensorFlow >= 2.2. ## Deprecations * The `gpflow.utilities.utilities` submodule has been deprecated and will be removed in GPflow 2.3. User code should access functions directly through `gpflow.utilities` instead (#1650). ## Major Features and Improvements * Improves compatibility between monitoring API and Scipy optimizer (#1642). * Adds `_add_noise_cov` method to GPR model class to make it more easily extensible (#1645). ## Bug Fixes * Fixes a bug in ModelToTensorBoard (#1619) when `max_size=-1` (#1619) * Fixes a dynamic shape issue in the quadrature code (#1626). * Fixes #1651, a bug in `fully_correlated_conditional_repeat` (#1652). * Fixes #1653, a bug in the "fallback" code path for multioutput Kuf (#1654). * Fixes a bug in the un-whitened code path for the fully correlated conditional function (#1662). * Fixes a bug in `independent_interdomain_conditional` (#1663). * Fixes an issue with the gpflow.config API documentation (#1664). * Test suite * Fixes the test suite for TensorFlow 2.4 / TFP 0.12 (#1625). * Fixes mypy call (#1637). * Fixes a bug in test_method_equivalence.py (#1649). ## Thanks to our Contributors This release contains contributions from: johnamcleod, st--, vatsalaggarwal, sam-willis, vdutor