https://github.com/mariloubodde/NNoVAE
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Tip revision: 560351c897476e4e869feafaa39a077fa5a7aa86 authored by mariloubodde on 23 March 2022, 16:37:52 UTC
Merge pull request #18 from mariloubodde/17-change-nb-names
Tip revision: 560351c
README.md
# NNoVAE

Method described in  https://doi.org/10.1101/2022.03.18.484650.

All analysis notebooks can be found in the analysis directory. The appropriate conda environment is specified at the top of each notebook.

To perform species assignment for a test dataset only a subset of these notebooks is used. The tracking directory contains subdirectories for each of the four independent datasets analysed in the preprint. To perform species assignment for a test dataset, follow the step in the 0_NNoVAE_assignment.ipynb. This notebook contains instructions on running two notebooks in the analysis folder and provides the parameter values which should be used.

The pipeline for wgs in silico extractions is coming soon!
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