import functools from enum import Enum from typing import Any, List, Optional, Sequence, TYPE_CHECKING, Tuple, Union import numpy as np import tensorflow as tf import tensorflow_probability as tfp from tensorflow.python.ops import array_ops from typing_extensions import Final from .config import default_float, default_summary_fmt if TYPE_CHECKING: from IPython.lib import pretty DType = Union[np.dtype, tf.DType] VariableData = Union[List, Tuple, np.ndarray, int, float] # deprecated Transform = Union[tfp.bijectors.Bijector] Prior = Union[tfp.distributions.Distribution] TensorType = Union[tf.Tensor, tf.Variable, "Parameter"] """ Type alias for tensor-like types that are supported by most TensorFlow and GPflow operations. NOTE: Union types like this do not work with the `register` method of `multipledispatch`'s `Dispatcher` class. Instead use `TensorLike`. """ # We've left this as object until we've tested the performance consequences of using the full set # (np.ndarray, tf.Tensor, tf.Variable, Parameter), see https://github.com/GPflow/GPflow/issues/1434 TensorLike: Final[Tuple[type, ...]] = (object,) """ :var TensorLike: Collection of tensor-like types for registering implementations with `multipledispatch` dispatchers. """ _NativeScalar = Union[int, float] _Array = Sequence[Any] # a nested array of int, float, bool etc. kept simple for readability TensorData = Union[_NativeScalar, _Array, TensorType] def _IS_PARAMETER(o: object) -> bool: return isinstance(o, Parameter) def _IS_TRAINABLE_PARAMETER(o: object) -> bool: return isinstance(o, Parameter) and o.trainable class Module(tf.Module): @property def parameters(self) -> Tuple["Parameter", ...]: return tuple(self._flatten(predicate=_IS_PARAMETER)) @property def trainable_parameters(self) -> Tuple["Parameter", ...]: return tuple(self._flatten(predicate=_IS_TRAINABLE_PARAMETER)) def _representation_table(self, object_name: str, tablefmt: Optional[str]) -> str: from .utilities import leaf_components, tabulate_module_summary repr_components = [object_name] if leaf_components(self): repr_components.append(tabulate_module_summary(self, tablefmt=tablefmt)) return "\n".join(repr_components) def _repr_html_(self) -> str: """ Nice representation of GPflow objects in IPython/Jupyter notebooks """ from html import escape return self._representation_table(escape(repr(self)), "html") def _repr_pretty_(self, p: "pretty.RepresentationPrinter", cycle: bool) -> None: """ Nice representation of GPflow objects in the IPython shell """ repr_str = self._representation_table(repr(self), default_summary_fmt()) p.text(repr_str) class PriorOn(Enum): CONSTRAINED = "constrained" UNCONSTRAINED = "unconstrained" class Parameter(tfp.util.TransformedVariable): def __init__( self, value: TensorData, *, transform: Optional[Transform] = None, prior: Optional[Prior] = None, prior_on: Union[str, PriorOn] = PriorOn.CONSTRAINED, trainable: bool = True, dtype: Optional[DType] = None, name: Optional[str] = None, ): """ A parameter retains both constrained and unconstrained representations. If no transform is provided, these two values will be the same. It is often challenging to operate with unconstrained parameters. For example, a variance cannot be negative, therefore we need a positive constraint and it is natural to use constrained values. A prior can be imposed either on the constrained version (default) or on the unconstrained version of the parameter. """ if transform is None: transform = tfp.bijectors.Identity() value = _cast_to_dtype(value, dtype) _validate_unconstrained_value(value, transform, dtype) super().__init__(value, transform, dtype=value.dtype, trainable=trainable, name=name) self.prior = prior self.prior_on = prior_on # type: ignore # see https://github.com/python/mypy/issues/3004 def log_prior_density(self) -> tf.Tensor: """ Log of the prior probability density of the constrained variable. """ if self.prior is None: return tf.convert_to_tensor(0.0, dtype=self.dtype) y = self if self.prior_on == PriorOn.CONSTRAINED: # evaluation is in same space as prior return tf.reduce_sum(self.prior.log_prob(y)) else: # prior on unconstrained, but evaluating log-prior in constrained space x = self.unconstrained_variable log_p = tf.reduce_sum(self.prior.log_prob(x)) if self.transform is not None: # need to include log|Jacobian| to account for coordinate transform log_det_jacobian = self.transform.inverse_log_det_jacobian(y, y.shape.ndims) log_p += tf.reduce_sum(log_det_jacobian) return log_p @property def prior_on(self) -> PriorOn: return self._prior_on @prior_on.setter def prior_on(self, value: Union[str, PriorOn]) -> None: self._prior_on = PriorOn(value) @property def unconstrained_variable(self) -> tf.Variable: return self._pretransformed_input @property def transform(self) -> Optional[Transform]: return self.bijector @property def trainable(self) -> bool: """ `True` if this instance is trainable, else `False`. This attribute cannot be set directly. Use :func:`gpflow.set_trainable`. """ return self.unconstrained_variable.trainable def assign( self, value: TensorData, use_locking: bool = False, name: Optional[str] = None, read_value: bool = True, ) -> tf.Tensor: """ Assigns constrained `value` to the unconstrained parameter's variable. It passes constrained value through parameter's transform first. Example: ``` a = Parameter(2.0, transform=tfp.bijectors.Softplus()) b = Parameter(3.0) a.assign(4.0) # `a` parameter to `2.0` value. a.assign(tf.constant(5.0)) # `a` parameter to `5.0` value. a.assign(b) # `a` parameter to constrained value of `b`. ``` :param value: Constrained tensor-like value. :param use_locking: If `True`, use locking during the assignment. :param name: The name of the operation to be created. :param read_value: if True, will return something which evaluates to the new value of the variable; if False will return the assign op. """ unconstrained_value = _validate_unconstrained_value(value, self.transform, self.dtype) return self.unconstrained_variable.assign( unconstrained_value, use_locking=use_locking, name=name, read_value=read_value ) def _cast_to_dtype( value: TensorData, dtype: Optional[DType] = None ) -> Union[tf.Tensor, tf.Variable]: if dtype is None: dtype = default_float() if tf.is_tensor(value): # NOTE(awav) TF2.2 resolves issue with cast. # From TF2.2, `tf.cast` can be used alone instead of this auxiliary function. # workaround for https://github.com/tensorflow/tensorflow/issues/35938 return tf.cast(value, dtype) else: return tf.convert_to_tensor(value, dtype=dtype) def _validate_unconstrained_value( value: TensorData, transform: tfp.bijectors.Bijector, dtype: DType ) -> tf.Tensor: value = _cast_to_dtype(value, dtype) unconstrained_value = _to_unconstrained(value, transform) message = ( "gpflow.Parameter: the value to be assigned is incompatible with this parameter's " "transform (the corresponding unconstrained value has NaN or Inf) and hence cannot be " "assigned." ) return tf.debugging.assert_all_finite(unconstrained_value, message=message) def _to_constrained(value: TensorType, transform: Optional[Transform]) -> TensorType: if transform is not None: return transform.forward(value) return value def _to_unconstrained(value: TensorType, transform: Optional[Transform]) -> TensorType: if transform is not None: return transform.inverse(value) return value