#PBS -l select=1:ncpus=1:mem=2gb #PBS -l walltime=04:30:00 start=$SECONDS module load anaconda3/personal source activate conda activate insertion_site_analysis cd /rds/general/project/bacterial_evo_genomics/live/gps_annotations_4_2_2020/gps_gubbins_runs bash ./ISA/bash/isa_pipeline.sh ./gps_run_data/gps ./gps_run_data/tn1207.fasta \ 2000 gps_mega_run gps_mega no duration=$(( SECONDS - start )) echo $duration > mega_run_time.txt