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LaTeX Font Info: External font `cmex10' loaded for size (Font) <7> on input line 50. LaTeX Font Info: Try loading font information for U+lasy on input line 50. (/usr/share/texlive/texmf-dist/tex/latex/base/ulasy.fd File: ulasy.fd 1998/08/17 v2.2e LaTeX symbol font definitions ) LaTeX Font Info: External font `cmex10' loaded for size (Font) <5> on input line 50. [1 {/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2 ] (./cat_ug.toc LaTeX Font Info: External font `cmex10' loaded for size (Font) <12> on input line 3. LaTeX Font Info: External font `cmex10' loaded for size (Font) <8> on input line 3. LaTeX Font Info: External font `cmex10' loaded for size (Font) <6> on input line 3. [3]) \tf@toc=\write3 \openout3 = `cat_ug.toc'. [4] [5 ] [6] (./chap_evoleq.tex Chapter 1. [7 ] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 273--278 [] Underfull \hbox (badness 10000) in paragraph at lines 279--285 [] ) [10] [11 ] [12] (./chap_cathist.tex Chapter 2. Package natbib Warning: Citation `fraedrichetal1998' on page 13 undefined on in put line 5. Package natbib Warning: Citation `borthetal2016' on page 13 undefined on input line 6. ) (./chap_pseudospec.tex [13 ] [14 ] Chapter 3. [15] Overfull \hbox (22.24377pt too wide) in paragraph at lines 198--202 \OT1/cmr/m/n/12 On the dis-cretized grid in the phys-i-cal space the modes with wave num-bers $(\OML/cmm/m/it/12 k[]; k[]\OT1/cmr/m/n/12 ) = (\OMS/cmsy/m/n/12 ^^@\OML/cmm/m/it/12 N=\OT1/cmr/m/n/12 2\OML/cmm/m/it/12 ; \OMS/cmsy/m/n/12 ^^@ \OML/cmm/m/it/12 M=\OT1/cmr/m/n/12 2)$ [] [16] [17] [18] Overfull \hbox (8.27783pt too wide) in paragraph at lines 677--684 \OT1/cmr/m/n/12 The per-mu-ta-tion ma-trix $\OML/cmm/m/it/12 P[]$ \OT1/cmr/m/n/ 12 maps the in-put vec-tor $[]$ to $[]$, a $4$-component [] [19] File: figures/phys_grid.pdf Graphic file (type pdf) Package pdftex.def Info: figures/phys_grid.pdf used on input line 881. (pdftex.def) Requested size: 341.72076pt x 256.0748pt. 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[22 <./figures/cmplx_cent_grid.pdf>] Overfull \hbox (0.47232pt too wide) in paragraph at lines 988--994 \OT1/cmr/m/n/12 and the cor-re-spond-ing ve-loc-ity fields $[](\OML/cmm/m/it/12 k[]; k[]; t\OT1/cmr/m/n/12 )$ and $[](\OML/cmm/m/it/12 k[]; k[]; t\OT1/cmr/m/n /12 )$ once the vor-tic-ity field $[](\OML/cmm/m/it/12 k[]; k[]; t\OT1/cmr/m/n/ 12 )$ [] [23] [24] [25] [26] File: figures/diss_mask.pdf Graphic file (type pdf) Package pdftex.def Info: figures/diss_mask.pdf used on input line 1511. (pdftex.def) Requested size: 379.68704pt x 284.52756pt. [27 <./figures/diss_mask.pdf>]) (./chap_sims.tex [28] Chapter 4. ) [29 ] [30] [31 ] [32] (./chap_impcat.tex Chapter 5. ) (./chap_runcat.tex [33 ] [34 ] Chapter 6. ) (./chap_catoutput.tex [35] [36 ] Chapter 7. ) (./chap_modifycat.tex [37] [38 ] Chapter 8. ) [39] [40 ] [41] [42] (./app_namelists.tex Appendix A. 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