Raw File
ChangeLog
2009-10-30 13:12  edwards

	* lib/util/ferm/disk_obj.h: First stab at a DB like object using
	  disks.

2009-10-24 09:47  kostas

	* lib/actions/ferm/invert/: syssolver_OPTeigbicg.cc,
	  syssolver_OPTeigbicg.h: contineued the integration of EigBiCG

2009-10-22 16:57  kostas

	* lib/actions/ferm/invert/: containers.h, syssolver_OPTeigbicg.h,
	  syssolver_OPTeigbicg_params.cc, syssolver_OPTeigbicg_params.h:
	  continue adding eigbicg

2009-10-21 23:22  kostas

	* lib/actions/ferm/invert/: syssolver_OPTeigbicg.cc,
	  syssolver_OPTeigbicg.h: Initial checking of eigbicg solver. (a
	  copy of eigcg for now...)

2009-10-21 23:15  kostas

	* lib/actions/ferm/invert/: syssolver_OPTeigbicg_params.cc,
	  syssolver_OPTeigbicg_params.h: Initial version of eigbicg
	  parameters

2009-10-21 17:03  kostas

	* other_libs/qdp-lapack/: aclocal.m4, configure,
	  include/bicgstab.h, include/qdp-lapack_eigbicg.h,
	  lib/IncrEigbicg_stub.c, lib/Makefile.am: updated the compilation
	  system

2009-10-21 16:54  kostas

	* other_libs/qdp-lapack/lib/: G_eval.c, IncrEigbicg.c, bicgstab.c,
	  biortho.c, conjugate.c, eigbicg.c, sort.c: added the C files for
	  eigbicg

2009-10-21 16:50  kostas

	* other_libs/qdp-lapack/: include/G_eval.h, include/bicgstab.h,
	  include/conjugate.h, include/qdp-lapack_Complex.h,
	  include/qdp-lapack_IncrEigbicg.h, include/qdp-lapack_biortho.h,
	  include/qdp-lapack_eigbicg.h,
	  include/qdp-lapack_numerical_private.h,
	  include/qdp-lapack_restart_X.h, include/sort.h, lib/Complex.c,
	  lib/IncrEigpcg.c, lib/IncrEigpcg_orthogonalize.c, lib/eigpcg.c,
	  lib/restart_X.c: inintial addition of eigbicg stuff

2009-10-16 09:37  bjoo

	*
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h:
	  A nicety... Removed unneeded call

2009-10-15 07:30  mpeardon

	* NEWS: Assassinated Robert Ewdards.

2009-10-13 09:56  edwards

	* lib/: Makefile.am, util/ferm/key_hadron_2pt_corr.cc,
	  util/ferm/key_hadron_2pt_corr.h,
	  util/ferm/key_hadron_3pt_corr.cc,
	  util/ferm/key_hadron_3pt_corr.h: Added keys for 2pt and 3pt
	  correlators.

2009-10-12 13:39  bjoo

	* lib/actions/ferm/invert/quda_solvers/:
	  syssolver_linop_quda_clover.h, syssolver_linop_quda_wilson.h: A
	  few dp build related hiccups

2009-10-09 15:03  bjoo

	* lib/: Makefile.am,
	  actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h,
	  actions/ferm/invert/quda_solvers/syssolver_linop_quda_wilson.h,
	  actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.cc,
	  actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.h,
	  meas/gfix/axgauge.cc, meas/gfix/temporal_gauge.cc: Tydied up the
	  gaugetransform code

2009-10-09 11:33  bjoo

	* lib/meas/gfix/: axgauge.cc, axgauge.h, coulgauge.cc, coulgauge.h,
	  gfix.h, grelax.cc, grelax.h, polar_dec.cc, polar_dec.h,
	  rot_colvec.cc, rot_colvec.h, temporal_gauge.cc, temporal_gauge.h:
	  Reverted axgauge.cc and h to version 3.0

2009-10-09 09:59  bjoo

	*
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_wilson.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_wilson.h,
	  lib/actions/ferm/invert/quda_solvers/syssolver_quda_clover_params.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_quda_clover_params.h,
	  lib/actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_quda_wilson_params.h,
	  lib/meas/gfix/axgauge.cc,
	  mainprogs/tests/t_invert4_precwilson.cc: Got Axial Gauge Working
	  for Clover

2009-10-08 13:45  edwards

	* lib/meas/gfix/: axgauge.cc, axgauge.h: Added a version that
	  returns the gauge rotation matrix. Commented out the bit that
	  would broadcast the last time slice.

2009-10-07 20:52  bjoo

	*
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h,
	  lib/init/chroma_init.cc, mainprogs/tests/t_invert4_precwilson.cc:
	  Added various runtime options plus the -cudadev option to select
	  cuda device

2009-10-06 16:35  bjoo

	* lib/: Makefile.am, actions/ferm/linop/clover_term_qdp_w.h,
	  meas/gfix/axgauge.cc, meas/gfix/axgauge.h: Added stuff

2009-10-06 16:34  bjoo

	* lib/actions/ferm/invert/quda_solvers/: enum_quda_io.cc,
	  enum_quda_io.h, syssolver_linop_quda_clover.cc,
	  syssolver_linop_quda_clover.h, syssolver_quda_clover_params.cc,
	  syssolver_quda_clover_params.h: Now packs in Rons format. Made
	  reconstruct, and precisions into optional params. Defaults should
	  do the right thing

2009-10-05 16:19  bjoo

	* lib/actions/ferm/invert/quda_solvers/:
	  syssolver_linop_quda_clover.cc, syssolver_linop_quda_clover.h,
	  syssolver_linop_quda_wilson.cc, syssolver_linop_quda_wilson.h,
	  syssolver_quda_clover_params.cc, syssolver_quda_clover_params.h,
	  syssolver_quda_wilson_params.cc, syssolver_quda_wilson_params.h:
	  Tweaked the QUDA interface. Allowed Verbosity Option. Made
	  solvers have floating precision

2009-10-01 16:21  bjoo

	* lib/actions/ferm/:
	  invert/quda_solvers/syssolver_linop_quda_clover.cc,
	  invert/quda_solvers/syssolver_linop_quda_clover.h,
	  invert/quda_solvers/syssolver_linop_quda_wilson.cc,
	  invert/quda_solvers/syssolver_linop_quda_wilson.h,
	  linop/clover_term_qdp_w.h: Clover GPU inverter now runs

2009-09-29 19:10  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_quda_clover.h,
	  lib/actions/ferm/linop/clover_term_qdp_w.h: Initial QUDA Clover
	  interface. SOmething is wrong with the off diagonal elements
	  maybe?

2009-09-29 07:20  bjoo

	* lib/actions/ferm/invert/: syssolver_linop_aggregate.cc,
	  quda_solvers/syssolver_linop_quda_wilson.cc,
	  quda_solvers/syssolver_quda_clover_params.cc,
	  quda_solvers/syssolver_quda_clover_params.h: Oops. I broke the
	  nightlies. This should fix

2009-09-28 13:24  bjoo

	* lib/actions/ferm/invert/quda_solvers/:
	  syssolver_cg_quda_wilson_params.cc,
	  syssolver_cg_quda_wilson_params.h,
	  syssolver_linop_cg_quda_wilson_single.cc,
	  syssolver_linop_cg_quda_wilson_single.h,
	  syssolver_linop_quda_wilson.cc, syssolver_linop_quda_wilson.h,
	  syssolver_quda_wilson_params.cc, syssolver_quda_wilson_params.h:
	  Renamed these

2009-09-25 15:28  bjoo

	*
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.cc,
	  lib/init/chroma_init.cc, mainprogs/tests/t_invert4_precwilson.cc:
	  Commit Dammit

2009-09-25 15:22  colin

	* lib/meas/pbp/pbp.h: Tired on no newline warning

2009-09-25 14:57  bjoo

	*
	  lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.h,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.h,
	  AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac,
	  lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.cc:
	  Wilson QUDA solver works

2009-09-25 08:41  bjoo

	* aclocal.m4, configure, configure.ac, lib/Makefile.am,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_cg_quda_wilson_params.h,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.cc,
	  lib/actions/ferm/invert/quda_solvers/syssolver_linop_cg_quda_wilson_single.h,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_invert4_precwilson.cc: OK. Interface with QUDA
	  calls solver etc, but gets wrong answer. Now for the bughunt

2009-09-23 13:18  bjoo

	* aclocal.m4, configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: Added autoconf hooks for linking
	  against the QUDA Library

2009-09-21 11:34  colin

	* lib/meas/laph/: baryon_operator.cc, baryon_operator.h,
	  dilution_scheme_info.cc, dilution_scheme_info.h,
	  field_smearing_handler.cc, field_smearing_handler.h,
	  field_smearing_info.cc, field_smearing_info.h,
	  gauge_configuration_handler.cc, gauge_configuration_handler.h,
	  gauge_configuration_info.cc, gauge_configuration_info.h,
	  inverter_info.cc, inverter_info.h, laph.h, laph_noise_info.cc,
	  laph_noise_info.h, pointer.h, quark_info.cc, quark_info.h,
	  quark_source_sink_handler.cc, quark_source_sink_handler.h,
	  time_slices.h, xml_help.cc, xml_help.h: Tidying up obsolete code

2009-09-17 10:48  colin

	* lib/meas/smear/: displace.cc, displace.h: Added routine to
	  displace one direction with a subset

2009-09-16 17:28  colin

	* lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.cc,
	  inline_stoch_laph_baryon_w.h, inline_stoch_laph_quark_w.cc,
	  inline_stoch_laph_quark_w.h: Removal of outdated code.

2009-09-16 17:23  colin

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: laph commented
	  out for now

2009-09-16 17:21  colin

	* lib/meas/meas.h: Removed laph.h

2009-09-16 17:21  colin

	* lib/Makefile.am: minor update

2009-09-15 09:33  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Updated regression input and output.

2009-09-14 17:06  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_baryon_matelem_colorvec_w.h: Add a flag that checks
	  whether derivatives or displacements are to be used for the
	  elementals.

2009-09-14 17:05  edwards

	* lib/meas/inline/hadron/inline_baryon_block_matelem_w.cc: Added a
	  default flag of false for derivatives.

2009-09-14 17:05  edwards

	* lib/meas/smear/: disp_colvec_map.cc, disp_colvec_map.h: Switched
	  to using a flag whether to use derivatives or displacements.

2009-09-14 17:04  edwards

	* lib/meas/smear/: displace.cc, displace.h: Added a rightNabla for
	  LatticeFermion and LatticeColorVector.

2009-09-14 16:52  tag chroma3-36-1

2009-09-14 16:52  edwards

	* NEWS: Info on 3.36.1

2009-09-14 16:50  edwards

	* lib/meas/inline/hadron/: inline_annih_prop_matelem_colorvec_w.cc,
	  inline_baryon_matelem_colorvec_w.cc,
	  inline_genprop_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.cc: Added a check of the output db
	  file. If it exists, do not insert the metadata again.

2009-09-14 16:29  edwards

	* aclocal.m4, configure: Induced changes

2009-09-14 16:29  edwards

	* configure.ac: Changed to 3.36.1

2009-09-12 00:20  edwards

	* lib/meas/laph/xml_help.cc: Changed fileExists to use the one in
	  FILEDB.

2009-09-04 08:47  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels_scalarsite.cc,
	  bicgstab_kernels_scalarsite.h, ord_cxmayf_kernel_generic.h,
	  ord_cxmayf_kernel_sse.h, ord_ib_rxupdate_kernel_generic.h,
	  ord_ib_rxupdate_kernel_sse.h, ord_ib_stupdates_kernel_generic.h,
	  ord_ib_stupdates_kernel_sse.h, ord_ib_zvupdates_kernel_generic.h,
	  ord_ib_zvupdates_kernel_sse.h,
	  ord_norm2x_cdotxy_kernel_generic.h,
	  ord_norm2x_cdotxy_kernel_sse.h,
	  ord_xmay_normx_cdotzx_kernel_generic.h,
	  ord_xmay_normx_cdotzx_kernel_sse.h,
	  ord_xmyz_normx_kernel_generic.h, ord_xmyz_normx_kernel_sse.h,
	  ord_xpaypbz_kernel_generic.h, ord_xpaypbz_kernel_sse.h,
	  ord_yxpaymabz_kernel_generic.h, ord_yxpaymabz_kernel_sse.h:
	  Reworked kernels to handle odd number of threads

2009-09-03 11:45  colin

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added stoch
	  laph baryon

2009-09-03 11:44  colin

	* lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.cc,
	  inline_stoch_laph_baryon_w.h: Further work

2009-09-03 11:43  colin

	* lib/meas/laph/: baryon_operator.cc, baryon_operator.h, laph.h,
	  quark_source_sink_handler.cc: Added baryonoperator

2009-09-03 11:40  colin

	* lib/Makefile.am: Added baryon_operator.h .cc

2009-09-02 17:06  colin

	* lib/meas/laph/: quark_info.cc, quark_source_sink_handler.cc,
	  xml_help.cc: Some bug fixes...nearly final.

2009-09-02 10:57  colin

	* lib/meas/laph/: laph_noise_info.cc, quark_source_sink_handler.cc,
	  quark_source_sink_handler.h: Minor tweaks

2009-09-01 21:48  colin

	* lib/meas/laph/quark_source_sink_handler.cc: Added inverter info
	  to record xml in quark_source_sink_handler

2009-09-01 15:51  jbulava

	* lib/actions/ferm/invert/invibicgstab.cc: Same bug fixed as
	  invbicgstab.cc

2009-09-01 15:25  jbulava

	* lib/actions/ferm/invert/invbicgstab.cc: Fixed bug in early
	  termination. Added ret.n_count = MaxBiCGStab at beginning.

2009-09-01 14:42  colin

	* lib/meas/laph/: inverter_info.cc, inverter_info.h,
	  quark_source_sink_handler.cc: Last few tweaks for version 1 code.

2009-09-01 11:41  colin

	* lib/meas/laph/: inverter_info.cc, inverter_info.h, laph.h,
	  quark_source_sink_handler.cc, time_slices.h: Minor modifications
	  towards completion.

2009-09-01 11:40  colin

	* lib/Makefile.am: Added time_slices.h

2009-08-30 19:56  colin

	* lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Nearing
	  completion

2009-08-30 19:55  colin

	* lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h,
	  field_smearing_handler.cc, gauge_configuration_handler.cc,
	  inverter_info.cc, laph_noise_info.cc, laph_noise_info.h,
	  quark_source_sink_handler.cc, quark_source_sink_handler.h:
	  Further refinements ... converging towards completion

2009-08-29 19:23  colin

	* lib/meas/laph/quark_source_sink_handler.cc: Further work.

2009-08-29 14:04  colin

	* lib/meas/inline/hadron/: inline_stoch_laph_quark_w.cc,
	  inline_stoch_laph_quark_w.h: Further development (still
	  unfinished)

2009-08-29 13:33  colin

	* lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h,
	  field_smearing_handler.cc, field_smearing_handler.h,
	  field_smearing_info.cc, field_smearing_info.h,
	  gauge_configuration_handler.cc, gauge_configuration_handler.h,
	  gauge_configuration_info.cc, gauge_configuration_info.h,
	  inverter_info.cc, inverter_info.h, laph_noise_info.cc,
	  laph_noise_info.h, quark_info.cc, quark_info.h,
	  quark_source_sink_handler.cc, quark_source_sink_handler.h,
	  xml_help.cc: Significant code development, but still unfinished.

2009-08-27 15:22  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Added on a 1k padding for the metadata.

2009-08-26 12:16  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Switched back to older genprop code - before the switch to
	  time-slice.

2009-08-25 13:14  tag chroma3-36-0

2009-08-25 13:14  edwards

	* NEWS: Info on 3.36.0

2009-08-25 13:09  edwards

	* aclocal.m4, configure: Induced changes

2009-08-25 13:09  edwards

	* configure.ac: Changed to 3.36.0

2009-08-25 13:08  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Switched the algorithm for how contractions. Now, it is more
	  time-slice based. So, contractions are done for each time-slice
	  in succession, and only over the plateau region. This can be
	  potentially SLOWER than before.  To see the speed-up, the user
	  must make sure the geometry has time local to a compute node.
	  However, the code is always correct even if the "geom" flag is
	  not used.

2009-08-25 13:06  edwards

	* lib/meas/smear/: displace.cc, displace.h: Added a subset version.

2009-08-22 22:55  edwards

	* tests/chroma/glue/qactden/qactden.ini.xml: New inline
	  measurement.

2009-08-22 22:46  edwards

	* lib/meas/inline/glue/: inline_qactden.cc, inline_qactden.h:
	  Removed k5.

2009-08-22 16:05  edwards

	* lib/meas/glue/: qactden.cc, qactden.h: Fixed calling sequence.

2009-08-22 16:04  edwards

	* lib/: meas/inline/glue/inline_glue_aggregate.cc, Makefile.am:
	  Added inline_qactden.

2009-08-22 16:03  edwards

	* lib/meas/inline/glue/: inline_qactden.cc, inline_qactden.h,
	  inline_qnaive.cc, inline_qnaive.h: Implemented an inline
	  measurement for qactden. Changed qnaive (and qactden) to follow
	  the newer model of inline calls, namely the Params and InlineMeas
	  all within a single namespace.

2009-08-22 15:17  edwards

	* lib/meas/glue/: qactden.cc, qactden.h: Converted (from SZIN) and
	  now compiles.

2009-08-22 15:16  edwards

	* lib/Makefile.am: Added qactden.{h,cc}.

2009-08-21 16:51  colin

	* lib/meas/laph/quark_source_sink_handler.cc: Minor changes to
	  circumvent the infamous XMLReader bug.

2009-08-21 10:54  colin

	* lib/meas/inline/hadron/: inline_stoch_laph_quark_w.cc,
	  inline_stoch_laph_quark_w.h: Finally a version of
	  inline_stoch_laph_quark that will run (hopefully)

2009-08-21 10:53  colin

	* lib/Makefile.am: Minor change quark_action_info to quark_info

2009-08-21 10:42  colin

	* lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h,
	  field_smearing_handler.cc, field_smearing_handler.h,
	  field_smearing_info.cc, field_smearing_info.h,
	  gauge_configuration_handler.cc, gauge_configuration_handler.h,
	  gauge_configuration_info.cc, gauge_configuration_info.h,
	  inverter_info.cc, inverter_info.h, laph.h, laph_noise_info.cc,
	  laph_noise_info.h, quark_action_info.cc, quark_action_info.h,
	  quark_info.cc, quark_info.h, quark_source_sink_handler.cc,
	  quark_source_sink_handler.h, xml_help.cc, xml_help.h: Significant
	  code changes.

2009-08-05 11:26  jbulava

	* lib/meas/inline/hadron/inline_stoch_meson_w.cc: Removed the check
	  that requires the diluted sources to reproduce the entire
	  undiluted source. This check fails if all t0's are not used with
	  full time dilution.

2009-08-04 15:10  colin

	* lib/meas/laph/: field_smearing_handler.cc,
	  gauge_configuration_handler.cc, gauge_configuration_handler.h,
	  quark_source_sink_handler.cc: Minor updates to the Laph Env

2009-08-04 08:43  bjoo

	* lib/Makefile.am: Fixed Makefile issues reported by Christian
	  Hagen

2009-08-03 11:19  bjoo

	* other_libs/qdp-lapack/lib/lapack_stub.cc: Added a missing stub to
	  lapack stub.cc

2009-07-31 16:04  colin

	* lib/meas/laph/field_smearing_handler.cc: Added #include
	  <typeinfo> to enable bad_cast in field_smearing_handler

2009-07-31 15:20  colin

	* lib/Makefile.am: Added quark_source_sink_handler.h and .cc

2009-07-31 15:15  colin

	* lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Minor
	  update...still no where near finished.

2009-07-31 15:13  colin

	* lib/meas/laph/: dilution_scheme_info.cc, dilution_scheme_info.h,
	  field_smearing_handler.cc, field_smearing_handler.h,
	  field_smearing_info.cc, field_smearing_info.h,
	  gauge_configuration_handler.cc, gauge_configuration_handler.h,
	  gauge_configuration_info.cc, gauge_configuration_info.h,
	  inverter_info.cc, inverter_info.h, laph.h, laph_noise_info.cc,
	  laph_noise_info.h, pointer.h, quark_action_info.cc,
	  quark_action_info.h, quark_source_sink_handler.cc,
	  quark_source_sink_handler.h, xml_help.cc, xml_help.h: Added
	  several info and handler classes to the LaphEnv.  Quark sources
	  and sinks now implemented.  On to baryon, mesons....

2009-07-31 10:09  bjoo

	* lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.cc,
	  lib/meas/inline/hadron/inline_disco_eigcg_w.cc,
	  lib/meas/inline/hadron/inline_disco_eo_eigcg_w.cc,
	  other_libs/qdp-lapack/include/fortran_lapack.h,
	  other_libs/qdp-lapack/lib/fortran_lapack.cc, tests/regres.pl:
	  Precision Mucking about in the DISCO measurements and more EigCG
	  Stuff

2009-07-30 16:33  bjoo

	* aclocal.m4, configure,
	  lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.cc,
	  other_libs/qdp-lapack/lib/fortran_lapack.cc: Made EigCG work from
	  a Double Precision Build

2009-07-23 10:56  jbulava

	* lib/meas/laph/gauge_configuration_info.h: Bug fix.

2009-07-22 19:13  jbulava

	* lib/meas/laph/gauge_configuration_info.h: Added some utility
	  methods.

2009-07-21 22:44  edwards

	* lib/meas/smear/wupp_smear.cc: Put back in #error statement.

2009-07-21 22:43  edwards

	* lib/meas/smear/wupp_smear.cc: Working on this. Not ready yet.

2009-07-21 22:26  colin

	* lib/: Makefile.am, meas/laph/dilution_scheme_info.cc,
	  meas/laph/dilution_scheme_info.h, meas/laph/field_smearing.cc,
	  meas/laph/field_smearing.h, meas/laph/field_smearing_info.cc,
	  meas/laph/field_smearing_info.h, meas/laph/laph.h,
	  meas/laph/laph_noise_info.cc, meas/laph/laph_noise_info.h: [no
	  log message]

2009-07-20 22:10  edwards

	* tests/chroma/hadron/gauge_transf/gauge_transf.out.xml: Updated
	  regression output.

2009-07-18 15:53  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Use less baryon elementals.

2009-07-18 12:54  jbulava

	* lib/: Makefile.am,
	  meas/inline/hadron/inline_stoch_laph_quark_w.cc,
	  meas/laph/inverter_info.cc, meas/laph/inverter_info.h,
	  meas/laph/laph.h, meas/laph/quark_action_info.cc: Another
	  utility, to handle the inverter info.

2009-07-18 11:18  jbulava

	* lib/: Makefile.am,
	  meas/inline/hadron/inline_stoch_laph_quark_w.cc: Induced changes.

2009-07-18 11:17  jbulava

	* lib/meas/laph/: laph.h, quark_action_info.cc,
	  quark_action_info.h: More utilities. This is a simple wrapper
	  over the quark action.

2009-07-17 23:29  jbulava

	* lib/meas/laph/gauge_configuration_info.cc: Minor bug_fix

2009-07-17 22:44  jbulava

	* lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Bug fix.

2009-07-17 22:34  jbulava

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_stoch_laph_quark_w.cc,
	  meas/inline/hadron/inline_stoch_laph_quark_w.h,
	  meas/laph/gauge_configuration_info.h: Induced changes.

2009-07-17 22:29  jbulava

	* lib/meas/laph/: field_smearing_info.cc, field_smearing_info.h,
	  gauge_configuration_handler.cc, gauge_configuration_info.cc,
	  gauge_configuration_info.h, laph.h, laph_noise_info.cc,
	  laph_noise_info.h: More utils.

2009-07-17 17:34  edwards

	* lib/meas/inline/hadron/inline_static_prop_colorvec_w.cc: Changed
	  conventions for how the static quark is computed. Should not be
	  time-reversed now. Passes random gauge transformation tests
	  (looked at a two-static pion correlator).

2009-07-17 17:32  edwards

	* lib/meas/inline/glue/inline_random_transf_gauge.cc: Added
	  printing of observables after a gauge transformation.

2009-07-17 15:37  jbulava

	* lib/meas/inline/hadron/inline_stoch_laph_quark_w.cc: Induced
	  changes

2009-07-17 15:14  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac,
	  lib/actions/ferm/fermacts/eoprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/invert/syssolver_linop.h,
	  lib/actions/ferm/invert/syssolver_linop_eigcg_array.h,
	  lib/actions/ferm/invert/syssolver_mdagm.h,
	  other_libs/cpp_wilson_dslash/aclocal.m4,
	  other_libs/cpp_wilson_dslash/configure,
	  other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_mvv_recons_32bit_c.h,
	  other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_recons_32bit_c.h,
	  other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_recons_64bit_c.h,
	  other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_utils_32bit.h,
	  other_libs/cpp_wilson_dslash/include/cpp_dslash_parscalar_utils_64bit.h,
	  other_libs/cpp_wilson_dslash/lib/Makefile.am,
	  other_libs/cpp_wilson_dslash/lib/cpp_dslash_parscalar_utils_32bit.cc:
	  Cleaned up a bunch for XLC

2009-07-17 15:12  jbulava

	* lib/Makefile.am: Induced changes

2009-07-17 15:11  jbulava

	* lib/meas/laph/: gauge_configuration.cc, gauge_configuration.h,
	  gauge_configuration_handler.cc, gauge_configuration_handler.h,
	  gauge_configuration_info.cc, gauge_configuration_info.h, laph.h:
	  Some mild restructuring

2009-07-17 11:23  jbulava

	* lib/: Makefile.am, meas/laph/field_smearing.cc,
	  meas/laph/field_smearing.h, meas/laph/gauge_configuration.cc,
	  meas/laph/gauge_configuration.h, meas/laph/laph.h,
	  meas/laph/xml_help.cc, meas/laph/xml_help.h: More utilities for
	  the LapH smearing code.

2009-07-17 10:53  edwards

	* lib/meas/inline/io/: inline_eigen_bin_lime_colvec_read_obj.cc,
	  inline_eigen_bin_lime_colvec_read_obj.h: Indented so I can even
	  read the thing...

2009-07-17 10:52  bjoo

	* other_libs/qdp-lapack/: include/fortran_lapack.h,
	  include/qdp-lapack.h, include/qdp-lapack_fortran_lapack.h,
	  lib/fortran_lapack.cc, lib/lapack_stub.cc: Added Justins Lapack
	  Desired Function

2009-07-17 10:52  edwards

	* lib/meas/inline/hadron/inline_create_colorvecs.cc: Cleaned up.
	  Make sure to do correct number of hits.

2009-07-17 00:26  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Added new displacements.

2009-07-14 22:55  jbulava

	* lib/Makefile.am: Induced changes.

2009-07-14 22:52  jbulava

	* lib/meas/: meas.h, inline/hadron/inline_stoch_laph_baryon_w.cc,
	  inline/hadron/inline_stoch_laph_baryon_w.h,
	  inline/hadron/inline_stoch_laph_quark_w.cc,
	  inline/hadron/inline_stoch_laph_quark_w.h,
	  laph/gauge_configuration.cc, laph/gauge_configuration.h,
	  laph/laph.h: Added some utilities for the laph smearing routines.

2009-07-14 14:41  tag chroma3-35-0

2009-07-14 14:41  edwards

	* aclocal.m4, configure: Induced changes

2009-07-14 14:39  edwards

	* NEWS: Info on 3.35.0

2009-07-14 14:34  edwards

	* configure.ac: Changed to 3.35.0

2009-07-12 23:59  jbulava

	* lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.cc,
	  inline_stoch_laph_baryon_w.h: More work on this. Not even close
	  to compiling yet.

2009-07-11 20:45  jbulava

	* lib/meas/sources/: dilute_zN_eigvec_source_const.cc,
	  dilute_zN_eigvec_source_const.h: Bug fix.

2009-07-11 20:44  jbulava

	* lib/meas/inline/hadron/: inline_stoch_laph_baryon_w.h,
	  inline_stoch_laph_quark_w.cc: STOCH_LAPH_QUARK is ready to go.
	  More work on STOCH_LAPH_BARYON to come.

2009-07-08 22:13  jbulava

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_laph_diluted_props_w.cc,
	  meas/inline/hadron/inline_laph_diluted_props_w.h,
	  meas/inline/hadron/inline_stoch_laph_baryon_w.cc,
	  meas/inline/hadron/inline_stoch_laph_baryon_w.h,
	  meas/inline/hadron/inline_stoch_laph_quark_w.cc,
	  meas/inline/hadron/inline_stoch_laph_quark_w.h,
	  util/ferm/key_laph_dil_prop.cc, util/ferm/key_laph_dil_prop.h:
	  Changed the name of the diluted prop routine (per Colin's
	  request). Also added a VERY rough start to a routine for make
	  baryon source and sink functions from the diluted propagators.

2009-07-08 17:44  jbulava

	* lib/meas/inline/hadron/: inline_laph_diluted_props_w.cc,
	  inline_laplace_eigs.cc: bug fix.

2009-07-08 17:06  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Some more
	  revisions.

2009-07-08 14:52  bjoo

	* configure, lib/Makefile.am: Induced changes

2009-07-08 14:50  bjoo

	* NEWS, configure.ac, tests/regres.pl: Bumped version to 3-34-1

2009-07-08 14:46  bjoo

	* lib/actions/ferm/invert/syssolver_linop_bicgstab.h,
	  lib/actions/ferm/invert/syssolver_linop_ibicgstab.h,
	  lib/actions/ferm/invert/syssolver_mdagm_ibicgstab.h,
	  tests/regres.pl: Minor tweaks to the info echoed by solvers. Made
	  BiCGStab and IBiCGStab output timings. Added regressions

2009-07-08 14:45  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_clover_stout-cg-lf-clover.ini.xml,
	  t_leapfrog.prec_clover_stout-cg-lf-clover.log.xml,
	  t_leapfrog.prec_clover_stout-ibicgstab.ini.xml,
	  t_leapfrog.prec_clover_stout-ibicgstab.log.xml,
	  t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.ini.xml,
	  t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.log.xml,
	  t_leapfrog.prec_clover_stout-rel-cg-multiprec.ini.xml,
	  t_leapfrog.prec_clover_stout-rel-cg-multiprec.log.xml,
	  t_leapfrog.prec_clover_stout-rel-ibicgstab-multiprec.ini.xml,
	  t_leapfrog.prec_clover_stout-rel-ibicgstab-multiprec.log.xml,
	  t_leapfrog.prec_clover_stout-richardson-multiprec.ini.xml,
	  t_leapfrog.prec_clover_stout-richardson-multiprec.log.xml: Added
	  Regressions for IBICGStab and Reliable IBICGSTAB. Reduced volumes
	  for some other leapfrog tests to speed up how much wallclock time
	  they use

2009-07-07 17:00  bjoo

	* lib/actions/ferm/invert/bicgstab_kernels_scalarsite.h,
	  lib/actions/ferm/invert/ord_cxmayf_kernel_sse.h,
	  lib/actions/ferm/invert/ord_xmay_normx_cdotzx_kernel_sse.h,
	  lib/actions/ferm/invert/ord_yxpaymabz_kernel_sse.h,
	  tests/chroma/hadron/propagator/prec_clover-stout3d-bicrstab.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d-bicrstab.out.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d-ibicgstab.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d-ibicgstab.out.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d-rel-ibicgstab.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d-rel-ibicgstab.out.xml,
	  tests/chroma/hadron/propagator/regres.pl: OK. Minor bugfixes. set
	  stream_ps back to store_ps. Fixed multithreading issues and added
	  regression tests for new linop solvers

2009-07-07 15:13  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels_scalarsite.cc,
	  bicgstab_kernels_scalarsite.h, ord_ib_stupdates_kernel_generic.h,
	  ord_ib_stupdates_kernel_sse.h, reliable_ibicgstab.cc: Made
	  reliable_ibicgstab more stable by reinitializing sigma as well.
	  Debugged the kernels so that they can now run in multihreaded
	  mode too

2009-07-06 15:02  bjoo

	* lib/Makefile.am: Added Reliable IBiCGSTab

2009-07-06 15:02  bjoo

	* lib/actions/ferm/invert/: reliable_bicgstab.cc,
	  reliable_ibicgstab.cc, reliable_ibicgstab.h,
	  syssolver_linop_aggregate.cc,
	  syssolver_linop_rel_bicgstab_clover.h,
	  syssolver_linop_rel_ibicgstab_clover.cc,
	  syssolver_linop_rel_ibicgstab_clover.h,
	  syssolver_mdagm_aggregate.cc,
	  syssolver_mdagm_rel_bicgstab_clover.h,
	  syssolver_mdagm_rel_ibicgstab_clover.cc,
	  syssolver_mdagm_rel_ibicgstab_clover.h: First attempt at reliable
	  IBCGStab. Seems to get the right answer with threads=1. Need to
	  debug kernels for QMT_NUM_THREADS more than 1

2009-07-03 12:51  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: More checks....

2009-07-02 18:11  bjoo

	* lib/: Makefile.am, actions/ferm/invert/invbicrstab.cc,
	  actions/ferm/invert/invbicrstab.h,
	  actions/ferm/invert/syssolver_linop_aggregate.cc,
	  actions/ferm/invert/syssolver_linop_bicrstab.cc,
	  actions/ferm/invert/syssolver_linop_bicrstab.h: Added BiCRStab.
	  Not really a win it seems

2009-07-02 14:24  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invibicgstab.cc,
	  lib/actions/ferm/invert/invibicgstab.h,
	  lib/actions/ferm/invert/ord_cxmayf_kernel_sse.h,
	  lib/actions/ferm/invert/ord_xmay_normx_cdotzx_kernel_sse.h,
	  lib/actions/ferm/invert/ord_xmyz_normx_kernel_sse.h,
	  lib/actions/ferm/invert/ord_xpaypbz_kernel_sse.h,
	  lib/actions/ferm/invert/ord_yxpaymabz_kernel_sse.h,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_linop_ibicgstab.cc,
	  lib/actions/ferm/invert/syssolver_linop_ibicgstab.h,
	  lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_ibicgstab.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_ibicgstab.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc: Moved
	  IBiCGStab to its own solver (IBICGSTAB_INVERTER) and put back old
	  BiCGStab so both are available. Checked kernels in double prec,
	  looks good. Changed Inline Hadron Aggregate etc so that the
	  InlineLaplaceEig stuff doesnt compile unless BUILD_LAPACK is
	  defined with an --enable-lapack=lapack

2009-07-02 11:09  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels_scalarsite.h,
	  ord_ib_stupdates_kernel_sse.h, ord_ib_zvupdates_kernel_sse.h:
	  Seems to now work in scalar. On my laptop has multithread issues.
	  Check on 7n & 9q for parallel operation

2009-07-02 07:10  edwards

	* other_libs/qdp-lapack/: include/fortran_lapack.h,
	  include/qdp-lapack.h, lib/fortran_lapack.cc, lib/lapack_stub.cc:
	  Added dqestr to list of routines.

2009-07-02 07:10  edwards

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Changed to using a
	  qdp-lapack routine. This fixes the double build.

2009-07-02 06:52  edwards

	* other_libs/qdp-lapack/lib/lapack_stub.cc: Added stub routine for
	  dsetqr

2009-07-01 16:36  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels_naive.h,
	  invbicgstab.cc, ord_ib_stupdates_kernel_generic.h,
	  ord_ib_stupdates_kernel_sse.h: OK! IBigstab actually works now.
	  Found all bugs in the paper and PETSc. Now have one kernel -
	  zvupdates in double to debug still. Then to recheck single again

2009-07-01 10:10  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Added more tests.
	  Seems to work. Still without implicit restart.

2009-06-30 17:10  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Compiles and runs.
	  Need to implement restarting now.

2009-06-30 16:24  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Compiles, but
	  gives runtime error.

2009-06-30 15:48  bjoo

	* lib/actions/ferm/invert/invbicgstab.cc: Restored BiCGStab

2009-06-30 11:57  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac, lib/Makefile.am: Induced changes from IBiCGStab

2009-06-30 11:52  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels.h,
	  bicgstab_kernels_naive.h, bicgstab_kernels_scalarsite.cc,
	  bicgstab_kernels_scalarsite.h, invbicgstab.cc,
	  ord_cxmayf_kernel_generic.h, ord_cxmayf_kernel_sse.h,
	  ord_ib_rxupdate_kernel.h, ord_ib_rxupdate_kernel_generic.h,
	  ord_ib_rxupdate_kernel_sse.h, ord_ib_stupdates_kernel_generic.h,
	  ord_ib_stupdates_kernel_sse.h, ord_ib_stupdates_reduces.h,
	  ord_ib_zvupdates_kernel.h, ord_ib_zvupdates_kernel_generic.h,
	  ord_ib_zvupdates_kernel_sse.h,
	  ord_norm2x_cdotxy_kernel_generic.h,
	  ord_xmay_normx_cdotzx_kernel_generic.h,
	  ord_xmay_normx_cdotzx_kernel_sse.h,
	  ord_xmyz_normx_kernel_generic.h, ord_xmyz_normx_kernel_sse.h,
	  ord_xpaypbz_kernel_generic.h, ord_xpaypbz_kernel_sse.h,
	  ord_yxpaymabz_kernel_generic.h, ord_yxpaymabz_kernel_sse.h:
	  Switched BiCGStab over to IBICGStab. Needs thorough testing, but
	  seems OK in single and double on my laptop. Something weird is
	  going on with multithreads in scalar Will check in parscalar
	  elsewhere

2009-06-30 11:51  jbulava

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_laph_diluted_props_w.cc,
	  meas/inline/hadron/inline_laph_diluted_props_w.h: First crack at
	  a routine to do all inversions needed in the diluted LapH scheme.
	  Both sources and sinks are inserted into a single DB file. Still
	  have to smear the sink before writing. Also, at the moment the
	  source is stored as a full lattice fermion. This is extremely
	  wasteful if only a single t0 is to be used, but won't matter if
	  we end up doing all t0's.

2009-06-30 11:48  jbulava

	* lib/util/ferm/: key_laph_dil_prop.cc, key_laph_dil_prop.h:
	  Support for keys of LapH-diluted props.

2009-06-29 10:35  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Currently
	  compiles, solves tridiagonal evp, but more work to be done.

2009-06-28 13:24  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml:
	  New regression output.

2009-06-28 13:23  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Fixed paths.

2009-06-25 09:03  bjoo

	* lib/update/molecdyn/predictor/mre_extrap_predictor.cc: Added
	  timing info to chrono predictor

2009-06-24 16:01  jbulava

	* lib/Makefile.am: Induced changes

2009-06-24 15:59  jbulava

	* lib/meas/sources/: dilute_zN_eigvec_source_const.cc,
	  dilute_zN_eigvec_source_const.h, sources.h: Diluted source in
	  which noise is entered in the LapH subspace only. Seems to
	  compile.

2009-06-24 15:55  jbulava

	* lib/meas/sources/: source_const_aggregate.cc, sources.h: [no log
	  message]

2009-06-24 14:02  bjoo

	* other_libs/cpp_wilson_dslash/: include/cpp_clover_scalar.h,
	  include/cpp_dslash_scalar_64bit_c.h, include/cpp_dslash_types.h,
	  lib/cpp_clover_scalar_64bit.cc,
	  lib/cpp_dslash_3d_scalar_64bit.cc,
	  lib/cpp_dslash_scalar_64bit.cc, tests/testvol.h: Added some fixes
	  asked for by Wei except the Shift Table thingie

2009-06-23 16:34  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Updating input/output.

2009-06-23 15:18  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Krylov vectors are
	  orthogonal after big fix.

2009-06-23 15:01  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Fixed bug.

2009-06-23 12:47  jbulava

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Induced
	  changes.

2009-06-23 11:22  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: Added a simple
	  test of orthogonality

2009-06-23 11:12  jbulava

	* lib/: Makefile.am, meas/inline/hadron/inline_laplace_eigs.cc,
	  meas/inline/hadron/inline_laplace_eigs.h: Added first vesrion of
	  the lanczos routine. Seems to compile, no restart yet.

2009-06-17 14:11  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: More work on this.
	  Not ready to compile yet.

2009-06-15 14:04  jbulava

	* lib/meas/inline/hadron/inline_laplace_eigs.cc: More work.

2009-06-15 11:20  jbulava

	* lib/meas/inline/hadron/: inline_laplace_eigs.cc,
	  inline_laplace_eigs.h: First crack at lanczos algorithm to obtain
	  laplacian eigenpairs

2009-06-12 15:53  bjoo

	* lib/Makefile.am: Added another buncha kernels

2009-06-12 15:52  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels_naive.h,
	  bicgstab_kernels_scalarsite.h, ord_cxmayf_kernel.h,
	  ord_cxmayf_kernel_generic.h, ord_cxmayf_kernel_sse.h,
	  reliable_bicgstab.cc: Added another kernel

2009-06-11 11:20  bjoo

	* lib/actions/ferm/invert/syssolver_linop_cg.h: Solvers seem OK. Do
	  not use ssed-clover for now. It seems to produce
	  nonreproducibility in solvers

2009-06-10 16:05  bjoo

	* aclocal.m4, configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in: Added SSE Kernels for BICGSTAB.

2009-06-10 15:58  bjoo

	* lib/actions/ferm/invert/: bicgstab_kernels.h,
	  bicgstab_kernels_scalarsite.cc, bicgstab_kernels_scalarsite.h,
	  bicgstab_kernels_scalarsite_generic.cc,
	  bicgstab_kernels_scalarsite_generic.h,
	  ord_norm2x_cdotxy_kernel_generic.h,
	  ord_norm2x_cdotxy_kernel_sse.h,
	  ord_xmay_normx_cdotzx_kernel_generic.h,
	  ord_xmay_normx_cdotzx_kernel_sse.h,
	  ord_xmyz_normx_kernel_generic.h, ord_xmyz_normx_kernel_sse.h,
	  ord_xpaypbz_kernel_generic.h, ord_xpaypbz_kernel_sse.h,
	  ord_yxpaymabz_kernel_generic.h, ord_yxpaymabz_kernel_sse.h,
	  ord_norm2x_cdotxy_kernel.h, ord_xmay_normx_cdotzx_kernel.h,
	  ord_xmyz_normx_kernel.h, ord_xpaypbz_kernel.h,
	  ord_yxpaymabz_kernel.h: Commit before these disappear

2009-06-05 09:08  bjoo

	* lib/actions/ferm/invert/reliable_bicgstab.cc: Reorganized the
	  Reliable BiCGStab so no mallocs in the main loop

2009-06-04 16:33  bjoo

	* lib/Makefile.am: Induced Changes

2009-06-04 16:32  bjoo

	* lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h: Changed so
	  that the first solve takes psi as the initial guess when using
	  chronology

2009-06-04 16:30  bjoo

	*
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.cc:
	  Made ratio_conv_conv take a NULL predictor as its default. It
	  sets an initial guess first

2009-06-04 16:29  bjoo

	* lib/update/molecdyn/predictor/: null_predictor.cc,
	  null_predictor.h, predictor_aggregate.cc: Added Null Predictor

2009-06-03 15:20  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/invert/bicgstab_kernels.h,
	  lib/actions/ferm/invert/bicgstab_kernels_naive.h,
	  lib/actions/ferm/invert/bicgstab_kernels_scalarsite_generic.cc,
	  lib/actions/ferm/invert/bicgstab_kernels_scalarsite_generic.h,
	  lib/actions/ferm/invert/reliable_bicgstab.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h,
	  lib/actions/ferm/invert/syssolver_mdagm_rel_bicgstab_clover.h:
	  Added prototype bicgstab-kernels, to Clover Rel BiCGstab only.
	  When these work out they can propagate to normal BiCGStab too.

2009-06-02 11:56  bjoo

	* lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/syssolver_mdagm.h,
	  lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.h,
	  lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_lf_clover.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_timing.h,
	  lib/actions/ferm/invert/syssolver_mdagm_eigcg_qdp.h,
	  lib/actions/ferm/invert/syssolver_mdagm_mr.h,
	  lib/actions/ferm/invert/syssolver_mdagm_rel_bicgstab_clover.h,
	  lib/actions/ferm/invert/syssolver_mdagm_rel_cg_clover.h,
	  lib/actions/ferm/invert/syssolver_mdagm_richardson_multiprec_clover.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_ratio_conv_conv_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_ratio_conv_rat_monomial_w.h,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.cc,
	  tests/regres.pl: Changed chrono solver interface in 4D monomials.
	  ChronoPredictors are now passed into the SysSolverMdagM objects
	  through their new operator\(\). No changes to 5D SysSolverMdagMs
	  or 5D Monomials. No Changes to Polyprec Monomials. Regressions
	  appear to pass

2009-06-01 16:39  bjoo

	* lib/update/molecdyn/predictor/: chrono_predictor.h,
	  last_solution_predictor.h, linear_extrap_predictor.h,
	  mre_extrap_predictor.cc, mre_extrap_predictor.h: Updated 4D
	  Chrono predictors to handle 2 step processes. Monomial and MdagM
	  updates next

2009-06-01 15:46  bjoo

	* lib/update/molecdyn/predictor/: chrono_predictor.h,
	  last_solution_predictor.h, linear_extrap_predictor.h,
	  mre_extrap_predictor.cc, mre_extrap_predictor.h,
	  zero_guess_predictor.h: Initial chronology changes to support two
	  step chronology

2009-06-01 12:24  bjoo

	* lib/actions/ferm/invert/reliable_bicgstab.cc,
	  lib/actions/ferm/invert/reliable_cg.cc,
	  lib/update/molecdyn/monomial/force_monitors.cc,
	  lib/update/molecdyn/monomial/force_monitors.h,
	  mainprogs/main/hmc.cc, mainprogs/tests/t_leapfrog.cc: Reliable CG
	  can now do chronology. Also Can turn off force monitors

2009-05-28 11:36  bjoo

	* lib/actions/ferm/invert/: syssolver_mdagm_bicgstab.h,
	  syssolver_mdagm_cg_lf_clover.h,
	  syssolver_mdagm_rel_bicgstab_clover.h: Slight changes in the
	  reporting of the solvers

2009-05-22 15:50  bjoo

	* lib/actions/ferm/invert/: syssolver_linop_rel_bicgstab_clover.h,
	  syssolver_linop_rel_cg_clover.h,
	  syssolver_mdagm_rel_bicgstab_clover.h,
	  syssolver_mdagm_rel_cg_clover.h: Oopsies

2009-05-22 11:25  bjoo

	* lib/actions/ferm/invert/reliable_cg.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_rel_cg_clover.h,
	  tests/regres.pl, tests/t_leapfrog/regres.pl,
	  tests/t_leapfrog/t_leapfrog.prec_clover_stout-rel-cg-multiprec.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_clover_stout-rel-cg-multiprec.log.xml:
	  Added regressions for reliable CG in leapfrog and propagator

2009-05-22 10:29  bjoo

	* tests/chroma/hadron/propagator/:
	  prec_clover-stout3d-rel-cg-clover-multiprec.ini.xml,
	  prec_clover-stout3d-rel-cg-clover-multiprec.metric.xml,
	  prec_clover-stout3d-rel-cg-clover-multiprec.out.xml, regres.pl:
	  Test for Reliable CG

2009-05-22 10:22  bjoo

	* lib/Makefile.am: Added a reliably updated CG

2009-05-22 10:21  bjoo

	* lib/actions/ferm/invert/: reliable_cg.cc, reliable_cg.h,
	  syssolver_linop_aggregate.cc, syssolver_linop_rel_cg_clover.cc,
	  syssolver_linop_rel_cg_clover.h, syssolver_mdagm_aggregate.cc,
	  syssolver_mdagm_rel_cg_clover.cc,
	  syssolver_mdagm_rel_cg_clover.h,
	  syssolver_rel_bicgstab_clover_params.h: Added CG for clover with
	  reliable updating

2009-05-21 16:44  bjoo

	* lib/actions/ferm/invert/: reliable_bicgstab.cc,
	  syssolver_linop_rel_bicgstab_clover.h: Fixed reliable bicgstab so
	  that it barfs on nonconvergence

2009-05-21 15:32  bjoo

	* lib/actions/ferm/invert/: invbicgstab.cc, reliable_bicgstab.cc:
	  Added flopcounting to BiCGStab-s

2009-05-21 14:48  jbulava

	* mainprogs/main/: baryon_ops_red_dil.cc, make_baryon_ops.cc: Fixed
	  bug in baryon_ops_red_dil. Edited make_baryon_ops to reflect
	  change to inline_stoch_group_baryon.

2009-05-20 23:58  edwards

	* aclocal.m4, configure: Induced changes

2009-05-20 22:39  jbulava

	* lib/util/ferm/subset_vectors.h: Fixed bug in getDecayExtent. I
	  think I remember fixing this bug a while ago, I don't know why
	  it's still here.....

2009-05-20 16:19  bjoo

	* lib/actions/ferm/invert/invcg2.cc: Trying to make sure invcg2
	  goes through cliches

2009-05-20 15:41  bjoo

	* other_libs/cpp_wilson_dslash/tests/dslashm_w.cc: Fixed something
	  that stopped make check in cpp dslash

2009-05-20 15:28  bjoo

	* lib/actions/ferm/linop/: lwldslash_w_cppd.cc, lwldslash_w_cppd.h,
	  lwldslash_w_cppf.cc, lwldslash_w_cppf.h: Found a CPP Dslash
	  related funny here. Fixed

2009-05-20 15:15  bjoo

	* NEWS, aclocal.m4, configure, lib/Makefile.am: Hopefully this
	  commits it all

2009-05-20 15:07  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_clover_stout-cg-lf-clover.ini.xml,
	  t_leapfrog.prec_clover_stout-cg-lf-clover.log.xml,
	  t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.ini.xml,
	  t_leapfrog.prec_clover_stout-rel-bicgstab-multiprec.log.xml:
	  Added tests for 2 new clover solvers

2009-05-20 14:22  bjoo

	* lib/actions/ferm/invert/: reliable_bicgstab.cc,
	  syssolver_cg_clover_params.cc, syssolver_cg_clover_params.h,
	  syssolver_mdagm_aggregate.cc, syssolver_mdagm_cg_lf_clover.cc,
	  syssolver_mdagm_cg_lf_clover.h,
	  syssolver_mdagm_rel_bicgstab_clover.h: Added Single Prec CG
	  Solver and stuff

2009-05-20 11:27  bjoo

	* lib/Makefile.am: Makefile.am additions

2009-05-20 11:26  bjoo

	* lib/actions/ferm/invert/:
	  syssolver_rel_bicgstab_clover_params.cc,
	  syssolver_rel_bicgstab_clover_params.h: Some more

2009-05-20 11:25  bjoo

	* lib/actions/ferm/invert/: reliable_bicgstab.cc,
	  reliable_bicgstab.h, syssolver_linop_rel_bicgstab_clover.h,
	  syssolver_linop_aggregate.cc,
	  syssolver_linop_rel_bicgstab_clover.cc,
	  syssolver_mdagm_aggregate.cc,
	  syssolver_mdagm_rel_bicgstab_clover.cc,
	  syssolver_mdagm_rel_bicgstab_clover.h: Reliable BiCGStab

2009-05-20 11:24  bjoo

	* tests/chroma/hadron/propagator/regres.pl: regres.pl

2009-05-20 11:22  bjoo

	* tests/chroma/hadron/propagator/:
	  prec_clover-stout3d-rel-bicgstab-clover-multiprec.ini.xml,
	  prec_clover-stout3d-rel-bicgstab-clover-multiprec.metric.xml,
	  prec_clover-stout3d-rel-bicgstab-clover-multiprec.out.xml: Test
	  files for Reliable multiprec bicgstab

2009-05-19 23:04  jbulava

	* mainprogs/main/baryon_ops_red_dil.cc: Now it compiles.

2009-05-19 16:43  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Now only
	  calculate a single ordering at the sink, to save on storage

2009-05-19 16:42  jbulava

	* mainprogs/main/: Makefile.am, baryon_ops_red_dil.cc: Added a file
	  to combine elements of a finer dilution scheme into a coarser
	  one.

2009-05-19 16:07  edwards

	* lib/actions/ferm/linop/: eoprec_slic_linop_w.cc,
	  eoprec_slic_linop_w.h: Some changes to SLIC. Derivatives are not
	  correct.

2009-05-14 16:11  bjoo

	* lib/io/readmilc.h: There was a typo for the double prec guy in
	  the .h that stopped double prec builds.

2009-05-13 09:12  edwards

	* lib/: io/readmilc.cc, io/readmilc.h, util/gauge/gauge_startup.cc,
	  util/gauge/milc_gauge_init.cc: Changed readMILC to support a
	  double prec and single mode. However, internally, only
	  single-prec is actually read.

2009-05-12 23:32  edwards

	* lib/util/gauge/gauge_startup.cc: Changed readMILC to be only
	  single-prec.

2009-05-12 23:26  edwards

	* lib/: io/readmilc.cc, io/readmilc.h,
	  util/gauge/milc_gauge_init.cc: Changed MILC reader to a fixed
	  single precision.

2009-05-12 00:09  kostas

	* lib/meas/inline/hadron/inline_hadspec_w.cc: added RAND wall
	  source support

2009-05-08 07:09  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  util_baryon_s.cc: This adds the binary correlator code with
	  binary output.

2009-05-08 06:17  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h: I have added the calls to the binary
	  writers. This code was added because of the poor IO performance
	  on the QCDOC.

2009-05-08 06:15  mcneile

	* lib/meas/inline/hadron_s/: util_compute_8_pions_s.cc,
	  util_compute_8_scalars_s.cc, util_compute_8_vectors_s.cc: I have
	  added the bnary reader calls. We used this version of the code on
	  the qcdoc.

	  OK, perhaps we should now use the new database type classes. We
	  are just trting to complete this long standing problem.

2009-05-08 05:56  mcneile

	* lib/meas/hadron/hadron_corr_s.h: Binary writer from the qcdoc
	  version of the code.

2009-05-06 12:12  mcneile

	* tests/spectrum_s/: spectrum_s.out.xml, spectrum_s_HISQ.out.xml: I
	  have added additional tags, so that this passes make xcheck.

2009-05-06 11:56  mcneile

	* tests/spectrum_s/: spectrum_s_HISQ.ini.xml, spectrum_s.ini.xml: I
	  have added xml so that it runs now.

2009-05-06 10:12  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: Fixed a minor
	  typo.

2009-05-06 08:06  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h: This is the code I used at Argone. It has
	  hooks to do heavy-light mesons

2009-05-06 07:02  mcneile

	* lib/meas/inline/hadron_s/: util_compute_quark_prop_s.cc,
	  util_compute_quark_prop_s.h: I have added codes to do
	  non-degenerate inversions.  One issue is that a copy of the noise
	  sources also needs to be returned

2009-05-04 13:11  caubin

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h: Updated linear E-field to be implemented
	  correctly as well as allow to "patch" boundaries as in the
	  B-field.

2009-05-01 18:52  kostas

	* lib/meas/sources/rndzNwall_source_const.cc: .. comment change...

2009-05-01 18:41  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/sources/rndzNwall_source_const.cc,
	  lib/meas/sources/rndzNwall_source_const.h,
	  lib/meas/sources/source_const_aggregate.cc: added in the
	  compilation chain the random zN wall source

2009-05-01 13:34  kostas

	* lib/meas/sources/: rndzNwall_source_const.cc,
	  rndzNwall_source_const.h: added random ZN wall source

2009-05-01 11:50  bjoo

	* chroma-config.in: Fixed chroma-config.sh.in for CPP Dslash

2009-05-01 11:40  bjoo

	* other_libs/cpp_wilson_dslash/: aclocal.m4, configure,
	  include/Makefile.am: Fixed some Makefile.am typos that made it
	  hard to link against the cpp_wilson_dslash builds

2009-05-01 11:03  bjoo

	* lib/actions/ferm/linop/dslash_w.h: Oops

2009-04-27 10:02  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Fixed path for baryon.

2009-04-27 06:16  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h: I have included Chris Richard's code for
	  computing the variational scalar code for staggered mesons.

2009-04-27 00:22  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Changed to support num_vecs=10.

2009-04-26 23:15  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Added 3-derivs

2009-04-26 17:02  mcneile

	* lib/meas/inline/hadron_s/: util_compute_meson_s.h,
	  util_compute_meson_s.cc: check in Chris Richards.  Code to do
	  variational analysis for scalar channe (staggered fermions)

2009-04-26 16:36  mcneile

	* lib/Makefile.am: I have added the two new files written by Chris
	  Richards.

2009-04-26 16:32  mcneile

	* lib/meas/hadron/: scalar_local_s.cc, scalar_local_s.h: Code check
	  in for Chris Richards

	  Scalar correlator code for scalar mesons. For staggered fermions.

2009-04-21 20:47  tag chroma3-34-0

2009-04-21 20:47  bjoo

	* NEWS: Updated news, moved configure.ac to v3.34.0. Actually
	  Robert already did the latter

2009-04-21 20:25  bjoo

	* other_libs/qdp-lapack/lib/IncrEigpcg_orthogonalize.c: Hack to
	  IncrEigpcg with an extra orthogonalization for a potential HMC
	  application

2009-04-21 20:18  bjoo

	* aclocal.m4, configure: Added multiprec inverter tests

2009-04-21 20:08  bjoo

	* tests/regres.pl: Added new tests

2009-04-21 20:08  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_clover_stout-richardson-multiprec.ini.xml,
	  t_leapfrog.prec_clover_stout-richardson-multiprec.log.xml: Added
	  multiprec regression

2009-04-21 19:49  bjoo

	* tests/chroma/hadron/propagator/:
	  prec_clover-stout3d-richardson-clover-multiprec.ini.xml,
	  prec_clover-stout3d-richardson-clover-multiprec.metric.xml,
	  prec_clover-stout3d-richardson-clover-multiprec.out.xml,
	  regres.pl: Added multiprec regression

2009-04-21 18:32  bjoo

	* lib/actions/ferm/linop/lwldslash_w_pab.h: Added templating to the
	  PABDslash

2009-04-20 21:21  eneil

	* lib/Makefile.am, lib/meas/inline/inline.h,
	  lib/meas/inline/inline_aggregate.cc,
	  lib/meas/inline/pbp/inline_pbp_aggregate.cc,
	  lib/meas/inline/pbp/inline_pbp_aggregate.h,
	  lib/meas/inline/pbp/inline_psibarpsi_w.cc,
	  lib/meas/inline/pbp/inline_psibarpsi_w.h,
	  lib/meas/inline/pbp/pbp.h, lib/meas/pbp/mespbp_w.cc,
	  lib/meas/pbp/mespbp_w.h, lib/meas/pbp/pbp.h, tests/regres.pl,
	  tests/chroma/pbp/pbp.ini.xml, tests/chroma/pbp/pbp.metric.xml,
	  tests/chroma/pbp/pbp.out.xml, tests/chroma/pbp/regres.pl: Updated
	  the Wilson psi-bar-psi measurement code, added an inline
	  measurement and regression test.

2009-04-17 16:53  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in,
	  lib/actions/ferm/linop/lwldslash_w_cppd.cc,
	  lib/actions/ferm/linop/lwldslash_w_cppf.cc,
	  mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am,
	  other_libs/Makefile.am: Initial integration of CPP Dslash Done

2009-04-17 16:44  bjoo

	* lib/actions/ferm/linop/: dslash_w.h, lwldslash_w_cppd.cc,
	  lwldslash_w_cppd.h, lwldslash_w_cppf.cc, lwldslash_w_cppf.h:
	  Initial interface classes

2009-04-17 15:28  bjoo

	* other_libs/cpp_wilson_dslash/: NEWS,
	  include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h,
	  include/shift_table_scalar.h, lib/cpp_dslash_scalar_32bit.cc,
	  lib/cpp_dslash_scalar_64bit.cc, lib/shift_table_scalar.cc,
	  tests/dslash_3d_w.cc, tests/dslash_3d_w.h, tests/dslashm_w.cc,
	  tests/reunit.cc, tests/reunit.h, tests/testDslash3D.cc,
	  tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc,
	  tests/unittest.h: OK Ready to integrate hopefully

2009-04-17 14:23  bjoo

	* other_libs/cpp_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure,
	  configure.ac: Removed scalar code blocking.

2009-04-17 10:42  bjoo

	* other_libs/qdp-lapack/lib/IncrEigpcg.c: Reverting to the previous
	  version of this - without the orthogonalization before the solve
	  that Andreas added in for me as test code. Leaving in added code
	  but ifdef-ed out

2009-04-17 09:07  bjoo

	* other_libs/qdp-lapack/include/: fortran_lapack.h, qdp-lapack.h:
	  Added a using namespace QDP declaration to help the qdp_lapack
	  fortran bindings to build

2009-04-16 22:43  bjoo

	* aclocal.m4, configure: Induced Changes

2009-04-16 22:22  bjoo

	* lib/update/molecdyn/predictor/: mre_initcg_extrap_predictor.cc,
	  mre_initcg_extrap_predictor.h: Attempts at InitCG predictor

2009-04-16 22:10  bjoo

	*
	  tests/t_leapfrog/t_leapfrog.prec_clover_stout-richardson-multiprec.ini.xml:
	  Multi prec solver test input file

2009-04-16 22:08  bjoo

	*
	  tests/chroma/hadron/propagator/prec_clover-stout3d-richardson-clover-multiprec.ini.xml:
	  Test input for Richardson Multprec Solver

2009-04-16 22:04  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac, lib/Makefile.am, lib/linearop.h, lib/typelist.h,
	  lib/actions/ferm/fermacts/eoprec_wilson_coarse_fine_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/tprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermbcs/fermbc_factory_w.h,
	  lib/actions/ferm/fermbcs/simple_fermbc.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.cc,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab.h,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_linop_bicgstab.cc,
	  lib/actions/ferm/invert/syssolver_linop_cg.cc,
	  lib/actions/ferm/invert/syssolver_linop_cg_timing.cc,
	  lib/actions/ferm/invert/syssolver_linop_eigcg.cc,
	  lib/actions/ferm/invert/syssolver_linop_factory.h,
	  lib/actions/ferm/invert/syssolver_linop_mr.cc,
	  lib/actions/ferm/invert/syssolver_linop_richardson_multiprec_clover.cc,
	  lib/actions/ferm/invert/syssolver_linop_richardson_multiprec_clover.h,
	  lib/actions/ferm/invert/syssolver_mdagm_OPTeigcg.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_bicgstab.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_timing.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_eigcg_qdp.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_factory.h,
	  lib/actions/ferm/invert/syssolver_mdagm_mr.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_richardson_multiprec_clover.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_richardson_multiprec_clover.h,
	  lib/actions/ferm/invert/syssolver_richardson_clover_params.cc,
	  lib/actions/ferm/invert/syssolver_richardson_clover_params.h,
	  lib/actions/ferm/linop/clover_term_bagel_clover.h,
	  lib/actions/ferm/linop/clover_term_base_w.cc,
	  lib/actions/ferm/linop/clover_term_base_w.h,
	  lib/actions/ferm/linop/clover_term_qdp_w.cc,
	  lib/actions/ferm/linop/clover_term_qdp_w.h,
	  lib/actions/ferm/linop/clover_term_ssed.h,
	  lib/actions/ferm/linop/clover_term_w.h,
	  lib/actions/ferm/linop/dslash_w.h,
	  lib/actions/ferm/linop/eoprec_clover_dumb_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_clover_dumb_linop_w.h,
	  lib/actions/ferm/linop/eoprec_clover_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_clover_linop_w.h,
	  lib/actions/ferm/linop/lwldslash_base_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_w.h,
	  lib/actions/ferm/linop/lwldslash_qdpopt_w.cc,
	  lib/actions/ferm/linop/lwldslash_qdpopt_w.h,
	  lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_factory.h,
	  lib/actions/gauge/gaugebcs/periodic_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/periodic_gaugebc.h,
	  lib/actions/gauge/gaugebcs/simple_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/simple_gaugebc.h,
	  lib/actions/gauge/gaugestates/periodic_gaugestate.cc,
	  lib/actions/gauge/gaugestates/periodic_gaugestate.h,
	  lib/meas/glue/mesfield.cc, lib/meas/glue/mesfield.h,
	  lib/update/molecdyn/integrator/abs_integrator.h,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/predictor/predictor_aggregate.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_aniso_gaugeact.cc,
	  mainprogs/tests/t_gauge_force.cc,
	  other_libs/qdp-lapack/include/qdp-lapack.h,
	  other_libs/qdp-lapack/lib/IncrEigpcg.c,
	  other_libs/sse_wilson_dslash/include/sse_dslash_qdp_packer.h,
	  other_libs/sse_wilson_dslash/include/sse_dslash_qdp_packer_3d.h,
	  lib/actions/ferm/invert/inv_multiprec_richardson.cc,
	  lib/actions/ferm/invert/inv_multiprec_richardson.h: Added
	  Multiprec inverter stuff. Need qdp1_31_2 at least

2009-04-16 00:04  edwards

	* lib/meas/inline/hadron/inline_annih_prop_matelem_colorvec_w.cc:
	  Changed the Z(N) source to only be time-slice based.

2009-04-13 17:04  edwards

	* aclocal.m4, configure: Induced changes

2009-04-13 14:54  bjoo

	* other_libs/cpp_wilson_dslash/tests/: dslashm_w.cc, testClover.cc,
	  testDslash3D.cc, testDslashFull.cc, testvol.h, timeClover.cc,
	  timeDslash.cc, timeDslash3D.cc, unittest.h: Cleaned up scalar
	  branch. Works fine with QMT from inside QDP. MPI version next

2009-04-13 02:32  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Added printing of program info in metadata of the db.

2009-04-12 18:06  edwards

	* lib/meas/inline/hadron/: inline_annih_prop_matelem_colorvec_w.cc,
	  inline_annih_prop_matelem_colorvec_w.h,
	  inline_baryon_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.cc: Changed annih_prop to take an
	  array of sources.  Added propinfo to all db output.

2009-04-12 18:05  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.metric.xml, colorvec_matelem.out.xml: Updated
	  regression to use new annihilation prop routine.

2009-04-12 16:54  edwards

	* lib/: Makefile.am,
	  meas/inline/hadron/inline_annih_prop_matelem_colorvec_w.cc,
	  meas/inline/hadron/inline_annih_prop_matelem_colorvec_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_prop_matelem_colorvec_w.cc,
	  util/ferm/key_prop_matelem.cc, util/ferm/key_prop_matelem.h: New
	  annihilation prop routine. Split off the key/val elemental struct
	  and read/write routines into its own file.

2009-04-11 23:44  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_hadspec_w.cc,
	  lib/meas/sinks/norm_sh_sink_smearing.cc,
	  lib/meas/sinks/norm_sh_sink_smearing.h,
	  lib/meas/sinks/sink_smearing_aggregate.cc: added new sink

2009-04-11 15:24  edwards

	* aclocal.m4, configure: Induced change

2009-04-11 15:22  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.metric.xml: Fixed paths.

2009-04-11 00:33  edwards

	* lib/meas/sources/: zN_src.cc, zN_src.h: Added a zN_rng version
	  for just a single scalar number.

2009-04-11 00:03  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Match new input.

2009-04-10 23:59  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Switched to new create_colorvecs task.

2009-04-10 23:33  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added
	  block_orthog_colorvec

2009-04-10 23:32  edwards

	* lib/: Makefile.am,
	  meas/inline/hadron/inline_block_orthog_colorvec.cc,
	  meas/inline/hadron/inline_block_orthog_colorvec.h,
	  meas/inline/hadron/inline_create_colorvecs.cc,
	  meas/inline/hadron/inline_create_colorvecs.h: Moved
	  create_colorvecs over to  block_orthog_colorvec. Have split off
	  the laplacian iteration with orthogonalization step into the
	  create_colorvecs routine. Will change the block_orthog to do just
	  the blocking step.

2009-04-10 21:50  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_hadspec_w.cc,
	  meas/sources/norm_sh_source_const.cc,
	  meas/sources/norm_sh_source_const.h,
	  meas/sources/source_const_aggregate.cc: added a new type of
	  source

2009-04-09 19:00  caubin

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_disco_eo_eigcg_w.cc: ...

2009-04-09 18:57  caubin

	* lib/meas/hadron/: Ql_3pt_w.cc, Ql_3pt_w.h, barQll_w.cc,
	  barQll_w.h, mesQl_w.cc, mesQl_w.h: added modified files to fix
	  build.

2009-04-08 14:34  caubin

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_eigcg_w.h, inline_disco_eo_eigcg_w.cc,
	  inline_disco_eo_eigcg_w.h, inline_disco_eoprec_w.cc,
	  inline_disco_eoprec_w.h, inline_hadron_aggregate.cc,
	  inline_heavy_light_cont_w.cc: Modified disco files: Now there are
	  four types:	 inline_disco_w: Just the noise vectors, no
	  deflation    inline_disco_eigcg_w: Noise vectors + deflation
	  These two do not work, and not sure why:
	  inline_disco_eoprec_w: Noise vectors, no deflation, even/odd
	  prec.     inline_disco_eo_eigcg_w: Noise + deflation, even/odd
	  prec.

2009-04-06 13:33  bjoo

	* lib/update/molecdyn/integrator/lcm_integrator_leaps.cc: Commented
	  out Total Forces

2009-04-02 15:58  bjoo

	* lib/update/molecdyn/integrator/lcm_integrator_leaps.cc: Now
	  monitors total force from sum of monomials too...

2009-04-02 15:56  bjoo

	* lib/actions/ferm/invert/syssolver_mdagm_bicgstab.h: Added proper
	  residue printout and timing

2009-03-25 20:07  edwards

	* lib/actions/ferm/qprop/eoprec_fermact_qprop.cc: Changed a comment
	  to placate picky collaborators.

2009-03-24 16:18  caubin

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: Code still wrong,
	  and inefficient...going around in circles here.

2009-03-23 12:44  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.cc: Rearranged what groups are
	  printed where in the metadata. Purely cosmetic - no functional
	  change.

2009-03-19 17:49  mcneile

	* docs/large_nc.txt: Some basic documentation about compiling
	  chroma for large Nc.

2009-03-19 17:38  mcneile

	* lib/meas/hadron/walldeltapff_w.cc: Update so that chroma work
	  with Nc > 3

2009-03-19 13:17  mcneile

	* lib/meas/hadron/: barcomp_w.cc, barhqlq_w.cc, baryon_w.cc,
	  group_baryon_operator_w.cc, qqq_w.cc,
	  simple_baryon_operator_w.cc, simple_baryon_seqsrc_w.cc,
	  simple_hadron_operator_w.cc, walldeltaff_w.cc, wallnuclff_w.cc:
	  Added guard code so that chroma compiles with Nc <> 3

2009-03-19 13:12  mcneile

	* lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc,
	  inline_baryon_matelem_colorvec_w.cc,
	  inline_meson_block_matelem_w.cc,
	  inline_meson_matelem_colorvec_w.cc, inline_stoch_hadron_w.cc: I
	  have added hooks so that the code works for Nc <> 3

2009-03-19 13:10  mcneile

	* lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc,
	  inline_usqcd_write_ddpairs_prop.cc: Removed code that gave
	  problems with Nc <> 3

2009-03-19 13:06  mcneile

	* lib/actions/ferm/: qprop/central_tprec_fermact_qprop_w.cc,
	  linop/unprec_w12_linop_w.cc: Removed code for Nc <> 3

2009-03-19 09:08  mcneile

	* lib/actions/ferm/qprop/hisq_qprop.h: This is my first pass at
	  adding the level3 code to the HISQ action.

2009-03-18 15:44  caubin

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: fixed dilution
	  error...deflation part still isn't checked.

2009-03-18 12:03  mcneile

	* mainprogs/tests/Makefile.am: I have added the wrapper for the
	  staggered baryons

2009-03-18 12:00  mcneile

	* mainprogs/tests/t_stagg_baryon.cc: This is a wrapper program for
	  the calculation of charmed baryon.

2009-03-18 09:40  mcneile

	* lib/Makefile.am: I have added the experimental spin=3/2 staggered
	  baryon operators.

2009-03-18 09:37  mcneile

	* lib/meas/hadron/baryon_s.h: Protoptypes for j=3/2 baryon
	  correlators.

2009-03-18 09:34  mcneile

	* lib/meas/hadron/baryon_spin3by2_s.cc: This is experimental code
	  to compute some j=3/2 baryon correlators in the staggered
	  formalism.

2009-03-12 14:41  caubin

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_eigcg_w.h: fixed some bugs...code still not
	  finished.

2009-03-10 17:55  kostas

	* lib/util/ferm/composite_set.h: fixed a bug... needs more work
	  though...

2009-03-10 15:14  kostas

	* lib/util/ferm/composite_set.h: composite set function

2009-03-09 14:23  edwards

	* lib/meas/hadron/dilution_quark_source_const_w.cc: Turned off
	  sanity check that dilutions are complete on a time-slice.

2009-03-09 11:25  caubin

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_w.cc: got rid of nan problem in disco_eigcg

2009-03-06 14:30  caubin

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_w.cc: fixed minor bugs

2009-03-04 23:07  edwards

	* tests/chroma/hadron/colorvec_matelem/: block.out.xml,
	  colorvec_matelem.ini.xml, colorvec_matelem.out.xml: Changed to
	  using "sdb" instead of "db". New block input and output.

2009-03-04 23:04  edwards

	* other_libs/sse_wilson_dslash/: aclocal.m4, configure: Induced
	  changes

2009-03-04 23:02  edwards

	* README: Changed dependencies.

2009-03-04 23:02  edwards

	* configure: Induced changes.

2009-03-04 23:01  edwards

	* lib/: meas/inline/hadron/inline_baryon_block_matelem_w.cc,
	  meas/inline/hadron/inline_baryon_matelem_colorvec_w.cc,
	  meas/inline/hadron/inline_block_genprop_matelem_w.cc,
	  meas/inline/hadron/inline_block_prop_matelem_w.cc,
	  meas/inline/hadron/inline_disco_eigcg_w.cc,
	  meas/inline/hadron/inline_disco_w.cc,
	  meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc,
	  meas/inline/hadron/inline_grid_prop_matelem_w.cc,
	  meas/inline/hadron/inline_meson_block_matelem_w.cc,
	  meas/inline/hadron/inline_meson_grid_matelem_w.cc,
	  meas/inline/hadron/inline_meson_matelem_colorvec_w.cc,
	  meas/inline/hadron/inline_prop_matelem_colorvec_w.cc,
	  meas/inline/hadron/inline_stoch_hadron_w.cc,
	  util/ferm/key_val_db.h: Switched away from using  ffdb-lite DB
	  storage with Berkeley DB.  Now, have support for  filedb - self
	  contained DB implementation. No more Berkeley DB. The file format
	  is completely different. No more 3 files.

2009-03-04 22:57  edwards

	* aclocal.m4: Induced changes

2009-03-04 22:56  edwards

	* configure.ac: Changed to 3.34.0

2009-03-04 22:20  tag chroma3-33-0

2009-03-04 22:20  edwards

	* NEWS: Info on 3.33.0

2009-03-04 22:15  edwards

	* aclocal.m4, configure: Induced changes

2009-03-04 22:15  edwards

	* README: Changed dependencies.

2009-03-04 22:14  edwards

	* configure.ac: Changed to 3.33.0

2009-03-04 12:31  caubin

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_w.cc: fixed overwriting database bug.

2009-03-01 10:37  edwards

	* tests/chroma/hadron/colorvec_matelem/block.ini.xml: New input.

2009-02-27 11:44  caubin

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: got rid of one
	  output line

2009-02-27 10:43  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac: Added --enable-craypat option

2009-02-27 10:22  bjoo

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: lwldslash_w_sse.cc --
	  this is now initialized only once -- again

2009-02-23 14:52  edwards

	* lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc,
	  inline_baryon_block_matelem_w.h, inline_block_prop_matelem_w.cc,
	  inline_block_prop_matelem_w.h, inline_block_prop_w.cc,
	  inline_block_prop_w.h, inline_create_colorvecs.cc,
	  inline_meson_block_matelem_w.cc, inline_meson_block_matelem_w.h:
	  Moved around some indices. The form of the dbs will be different
	  than before. The prop code now has the blocks as a key. Changed
	  how the metadata is written to the DB so I can automatically
	  detect their type.

2009-02-23 14:50  edwards

	* lib/meas/inline/hadron/inline_block_colorvecs.cc: Just some
	  indentation so I can read the thing.

2009-02-23 14:50  edwards

	* lib/util/ferm/: block_couplings.cc, block_couplings.h: Trivial
	  reshuffling.

2009-02-23 14:49  edwards

	* configure: Induced changes

2009-02-23 14:46  edwards

	* aclocal.m4: Induced changes

2009-02-23 14:44  edwards

	* lib/: meas/inline/hadron/inline_hadron_aggregate.cc, Makefile.am:
	  Added inline_block_genprop_matelem.

2009-02-23 14:44  edwards

	* lib/meas/inline/hadron/: inline_block_genprop_matelem_w.cc,
	  inline_block_genprop_matelem_w.h: Blocking version of genprop
	  routine.

2009-02-23 14:35  kostas

	* other_libs/qdp-lapack/lib/lapack_stub.cc: fixed bug

2009-02-23 12:39  kostas

	* lib/meas/inline/hadron/: inline_block_colorvecs.cc,
	  inline_block_colorvecs.h: fixed a bug

2009-02-23 12:36  kostas

	* lib/meas/inline/hadron/inline_block_colorvecs.cc: added code for
	  writing out the smearing matrix... this is still not working

2009-02-23 12:03  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_block_colorvecs.cc,
	  lib/meas/inline/hadron/inline_block_colorvecs.h,
	  lib/meas/inline/hadron/inline_create_colorvecs.cc,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc: added blocking
	  of color vectors

2009-02-21 00:05  edwards

	* lib/update/molecdyn/monomial/read_rat_approx.cc: Changed a
	  std::cout to a QDPIO::cout to avoid 1000's of empty lines.

2009-02-20 15:29  caubin

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: Added all terms
	  required for Tr[gamma D^-1] for an eo-prec Dirac operator.

2009-02-20 10:17  edwards

	* lib/Makefile.am: Added jacobi_smear and jacobi_quark_smearing

2009-02-20 10:10  edwards

	* lib/meas/smear/: jacobi_quark_smearing.cc,
	  jacobi_quark_smearing.h, jacobi_smear.cc, jacobi_smear.h,
	  link_smearing_aggregate.cc, quark_displacement_aggregate.cc,
	  quark_smearing_aggregate.cc: Added jacobi quark smearing courtesy
	  of Dirk Pleiter. Removed some dos-isms from other files.

2009-02-20 10:02  caubin

	* lib/meas/hadron/Ql_3pt_w.cc: Made more general to output
	  11,12,21,22 spin-color trace combinations.

2009-02-17 18:45  bjoo

	* other_libs/sse_wilson_dslash/: aclocal.m4, configure,
	  configure.ac, include/mvv_recons_64bit.h,
	  include/sse_config_internal.h.in, include/types64.h,
	  lib/decomp_64bit_parscalar.c, lib/decomp_hvv_64bit_parscalar.c,
	  lib/mvv_recons_64bit_parscalar.c, lib/recons_64bit_parscalar.c,
	  tests/testDslash3D.cc, tests/testDslashFull.cc, tests/testvol.h,
	  tests/unittest.h: Added --enable-sloppy option to
	  sse_wilson_dslash. FLOP rate increased a little on parscalar
	  single, but not significantly because were still using DP
	  arithmetics. Only the halfspinors are 32 bit so improved memory
	  bandwidth and smaller messages. Lets see how it does on the Cray

2009-02-17 11:45  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Reweight the momentum phase in case there was momentum averaging.

2009-02-17 11:33  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added a function that will
	  return the multiplicity of a particular mom id.  This is number
	  of equiv. canonical mom. Only non-zero when mom averaging is
	  enabled. Can use this to undo the averaging.

2009-02-16 11:39  jbulava

	* lib/meas/inline/io/inline_eigen_bin_lime_colvec_read_obj.cc:
	  fixed bug

2009-02-16 11:22  edwards

	* tests/chroma/hadron/propagator/regres.pl: Removed the prec clover
	  orbifold for now - keeps failing.

2009-02-13 17:41  jbulava

	* lib/: Makefile.am,
	  meas/inline/io/inline_eigen_bin_lime_colvec_read_obj.cc,
	  meas/inline/io/inline_eigen_bin_lime_colvec_read_obj.h,
	  meas/inline/io/inline_io_aggregate.cc: Added reader to handle new
	  eigenvector code

2009-02-13 17:39  kostas

	* lib/meas/inline/hadron/inline_create_colorvecs.cc: added printing
	  of the smearing matrix

2009-02-13 15:17  bjoo

	* lib/actions/ferm/invert/: invcg2.cc, minvcg2.cc: Added PAT
	  instrumentation

2009-02-12 01:34  kostas

	* lib/meas/inline/hadron/inline_create_colorvecs.cc: fixed bug

2009-02-11 01:17  edwards

	* lib/actions/ferm/linop/: eoprec_clover_orbifold_linop_w.cc,
	  eoprec_clover_orbifold_linop_w.h: Fixed dagger of the operator.

2009-02-11 01:16  edwards

	* tests/chroma/hadron/propagator/prec_clover_orbifold.out.xml: New
	  regressions.

2009-02-11 00:14  kostas

	* lib/meas/inline/hadron/: inline_create_colorvecs.cc,
	  inline_create_colorvecs.h, inline_meson_block_matelem_w.cc: added
	  block-orthogonalization

2009-02-10 09:32  edwards

	* aclocal.m4, configure: Induced changes

2009-02-09 23:22  edwards

	* tests/chroma/hadron/propagator/: prec_clover_orbifold.ini.xml,
	  prec_clover_orbifold.metric.xml, prec_clover_orbifold.out.xml,
	  regres.pl: Added clover_orbifold regression.

2009-02-09 23:22  edwards

	* lib/: Makefile.am,
	  actions/ferm/fermacts/eoprec_clover_orbifold_fermact_w.cc,
	  actions/ferm/fermacts/eoprec_clover_orbifold_fermact_w.h,
	  actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/linop/eoprec_clover_orbifold_linop_w.cc,
	  actions/ferm/linop/eoprec_clover_orbifold_linop_w.h: Added clover
	  fermact with orbifold term. Updated the corresponding linop to
	  turn off the deriv terms since they are incorrect.

2009-02-09 17:16  edwards

	* lib/: Makefile.am,
	  actions/ferm/linop/eoprec_clover_orbifold_linop_w.cc,
	  actions/ferm/linop/eoprec_clover_orbifold_linop_w.h: Added
	  eoprec_clover_orbifold.

2009-02-09 16:20  bjoo

	* tests/regres.pl: woops.

2009-02-09 16:19  bjoo

	* lib/util/gauge/gauge_startup.cc, mainprogs/main/hmc.cc,
	  tests/regres.pl: Added reunitarization after gauge field reading
	  in hmc.cc and gauge_startup.cc

2009-02-06 10:53  bjoo

	* lib/actions/ferm/linop/clover_term_ssed.cc: Removed an info
	  message

2009-02-06 10:25  bjoo

	* lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h: Turned
	  off MinvCGAccum in RHMC Energies and forces

2009-02-05 10:19  bjoo

	* lib/actions/ferm/linop/: clover_term_ssed.cc, clover_term_ssed.h:
	  Tydied up threading in the SSED Clover. Regressions pass

2009-02-04 16:55  kostas

	* other_libs/qdp-lapack/: include/qdp-lapack.h,
	  lib/fortran_lapack.cc: added the interface for chelesky with the
	  matrix A given as mult1d

2009-02-04 16:26  kostas

	* other_libs/qdp-lapack/lib/lapack_stub.cc: added the stubs for
	  cholesky

2009-02-04 16:23  kostas

	* other_libs/qdp-lapack/: include/fortran_lapack.h,
	  include/qdp-lapack.h, include/qdp-lapack_fortran_lapack.h,
	  lib/fortran_lapack.cc: added the cholesky interface to lapack

2009-02-04 16:16  bjoo

	* lib/: actions/ferm/linop/clover_term_qdp_w.cc,
	  actions/ferm/linop/clover_term_qdp_w.h,
	  actions/ferm/linop/clover_term_ssed.cc,
	  util/gauge/stout_utils.cc: In process of tidying up the SSED
	  Clover. Tidyed up QDPClover and Stout Utils

2009-02-04 10:20  bjoo

	* lib/actions/ferm/linop/: clover_term_qdp_w.cc,
	  clover_term_qdp_w.h: Threaded the QDP Clover term

2009-02-03 16:35  edwards

	* lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc,
	  inline_baryon_matelem_colorvec_w.cc,
	  inline_block_prop_matelem_w.cc, inline_disco_eigcg_w.cc,
	  inline_disco_w.cc, inline_genprop_matelem_colorvec_w.cc,
	  inline_grid_prop_matelem_w.cc, inline_meson_block_matelem_w.cc,
	  inline_meson_grid_matelem_w.cc,
	  inline_meson_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.cc, inline_stoch_hadron_w.cc:
	  Changed to new DB constructor interface. Now pass in an
	  "open_flags", cache and page sizes.

2009-02-03 16:30  bjoo

	* lib/: actions/ferm/linop/clover_term_ssed.cc,
	  actions/ferm/linop/clover_term_ssed.h, init/chroma_init.cc: Added
	  some threading for SSED Clover term

2009-02-01 00:34  kostas

	* lib/: meas/inline/hadron/inline_baryon_block_matelem_w.cc,
	  meas/inline/hadron/inline_meson_block_matelem_w.cc,
	  util/ferm/block_couplings.cc, util/ferm/block_couplings.h,
	  util/ferm/block_subset.h: fixed bugs. Now block baryons work with
	  all quark  displacements

2009-01-31 15:55  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Changed t_sources/t_sink back to 0 and
	  3.

2009-01-31 10:52  kostas

	* lib/meas/inline/hadron/inline_baryon_block_matelem_w.cc: fixed
	  bug

2009-01-31 10:29  kostas

	* lib/: Makefile.am,
	  meas/inline/hadron/inline_baryon_block_matelem_w.cc,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_meson_block_matelem_w.cc: added the
	  block baryon and fixed a bug in block meson

2009-01-31 01:12  flemingg

	* lib/meas/sinks/sink_smearing_aggregate.cc: Added wall sink
	  smearing into the aggregator.

2009-01-31 00:14  kostas

	* lib/meas/inline/hadron/: inline_baryon_block_matelem_w.cc,
	  inline_baryon_block_matelem_w.h: added the block baryon code. Not
	  working yet

2009-01-31 00:13  kostas

	* lib/util/ferm/block_couplings.cc,
	  lib/util/ferm/block_couplings.h,
	  other_libs/qdp-lapack/include/qdp-lapack_fortran_lapack.h: added
	  block overlap code for three quarks (baryons) and started adding
	  new Lapack routines needed for the disconnected

2009-01-30 23:50  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: New format of regression test.

2009-01-30 23:49  edwards

	* lib/meas/inline/hadron/: inline_genprop_matelem_colorvec_w.cc,
	  inline_genprop_matelem_colorvec_w.h: Added new input flags. Have
	  restrict_plateau to restrict the storage of the genprop to only
	  the plateau region. Also, avg_equiv_mom  which restricts the
	  momentum to just averages and stores only the canonically ordered
	  momentum. Its like hadspec. The genprop is averaged over equiv
	  mom. Thus  p^2=1 is distinct from p^2=2 each being stored as
	  p=100 and 110, resp.

2009-01-30 16:19  caubin

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: Added P_R chi
	  routine and second piece needed for disconnected trace...

2009-01-30 16:07  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_meson_block_matelem_w.cc,
	  meas/inline/hadron/inline_meson_block_matelem_w.h,
	  util/ferm/block_couplings.cc, util/ferm/block_couplings.h: added
	  the block meson matelem code

2009-01-30 15:57  bjoo

	* lib/update/molecdyn/hmc/abs_hmc.h,
	  lib/update/molecdyn/hmc/lcm_hmc.h, mainprogs/main/hmc.cc,
	  tests/regres.pl, tests/hmc/hmc.prec_wilson.ini.xml,
	  tests/hmc/hmc.prec_wilson.log.xml,
	  tests/hmc/hmc.prec_wilson.out.xml: Added Reversibility check into
	  the HMC

2009-01-30 15:52  kostas

	* lib/: Makefile.am, util/ferm/block_couplings.cc,
	  util/ferm/block_couplings.h: added code to automatically compute
	  nearest neighboring blocks given a displacement path. It can be
	  used for both domain decomposition preconditioners and for
	  blocked color vectors.

2009-01-30 00:33  kostas

	* lib/util/ferm/: key_block_prop.cc, key_block_prop.h: something
	  missing

2009-01-30 00:31  kostas

	* lib/meas/inline/hadron/: inline_block_prop_matelem_w.cc,
	  inline_block_prop_matelem_w.h: Here is the code

2009-01-30 00:28  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc:
	  added the block propmatelem

2009-01-29 22:43  kostas

	* lib/meas/inline/hadron/: inline_block_prop_w.cc,
	  inline_block_prop_w.h: added the inline measurement for block
	  colorvector props

2009-01-29 22:42  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_disco_eigcg_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/io/qio_read_obj_funcmap.cc,
	  lib/meas/inline/io/qio_write_obj_funcmap.cc,
	  lib/util/ferm/block_subset.h: added block color vector
	  propagators

2009-01-29 11:57  caubin

	* lib/io/qprop_io.cc: Added backwards compatibility for propagators
	  with t_source.

2009-01-29 11:05  caubin

	* lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: ...

2009-01-27 18:33  edwards

	* README: Changed dependencies of chroma and qdp++.

2009-01-27 10:43  caubin

	* lib/meas/hadron/barQll_w.cc: fixed typo

2009-01-27 10:40  caubin

	* lib/meas/hadron/barQll_w.h: header file with backward static
	  quark

2009-01-27 10:39  caubin

	* lib/meas/hadron/: Ql_3pt_w.cc, barQll_w.cc: Added backwards
	  propagating static quark.

2009-01-26 17:56  edwards

	* lib/Makefile.am: Reorganized the eigcg codes. Moved the
	  _linop_OPTeigcg to mdagm_OPTeigcg.

2009-01-26 17:47  edwards

	* lib/actions/ferm/invert/: syssolver_linop_OPTeigcg.cc,
	  syssolver_linop_OPTeigcg.h, syssolver_linop_aggregate.cc,
	  syssolver_linop_cg.cc, syssolver_linop_eigcg.cc,
	  syssolver_linop_eigcg.h, syssolver_linop_eigcg_qdp.cc,
	  syssolver_linop_eigcg_qdp.h, syssolver_mdagm_OPTeigcg.cc,
	  syssolver_mdagm_OPTeigcg.h, syssolver_mdagm_aggregate.cc,
	  syssolver_mdagm_cg.cc, syssolver_mdagm_eigcg.h,
	  syssolver_mdagm_eigcg_qdp.cc, syssolver_mdagm_eigcg_qdp.h:
	  Reorganized the eigcg codes. Moved the original _linop_ routines
	  to _mdagm_ routines. The corresponding MdagM routines now just
	  solve M^dag*M*psi = chi . The LinOp routines solve  M*psi=chi .
	  Now, the LinOp calls the MdagM variant, but multiplies the rhs by
	  M^dag  .

2009-01-26 17:27  tag chroma3-32-0

2009-01-26 17:27  edwards

	* NEWS: Info on 3.32.0

2009-01-26 17:21  edwards

	* aclocal.m4, configure: Induced changes

2009-01-26 17:21  edwards

	* configure.ac: Changed to 3.32.0

2009-01-23 16:07  caubin

	* lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: commented
	  out sanity check for now...

2009-01-22 11:41  caubin

	* lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: Added sanity
	  checks

2009-01-22 11:25  caubin

	* lib/meas/inline/hadron/inline_heavy_light_cont_w.cc: removed
	  requirement of sources to be same...they need not be

2009-01-20 15:04  caubin

	* lib/meas/: hadron/Ql_3pt_w.cc, hadron/Ql_3pt_w.h,
	  inline/hadron/inline_heavy_light_cont_w.cc: [no log message]

2009-01-20 11:16  caubin

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_heavy_light_cont_w.cc,
	  meas/inline/hadron/inline_heavy_light_cont_w.h,
	  meas/inline/hadron/inline_static_light_cont_w.cc,
	  meas/inline/hadron/inline_static_light_cont_w.h: renamed inline
	  static_light_cont files to heavy_light_cont for future
	  modifications...

2009-01-19 15:02  caubin

	* lib/meas/inline/hadron/: inline_static_light_cont_w.cc,
	  inline_static_light_cont_w.h: updated what the code outputs

2009-01-16 12:30  caubin

	* lib/meas/: hadron/Ql_3pt_w.cc, hadron/Ql_3pt_w.h,
	  inline/hadron/inline_static_light_cont_w.cc,
	  inline/hadron/inline_static_light_cont_w.h: [no log message]

2009-01-16 12:25  caubin

	* lib/: Makefile.am, meas/hadron/hadron_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc: Added in code for
	  static-light three-point functions...

2009-01-15 23:06  kostas

	* lib/util/ferm/block_subset.h: block functions that help definning
	  block partitioning of the lattice

2008-12-21 16:45  edwards

	* lib/meas/hadron/: heavy_hadron_potentials_w.cc,
	  heavy_hadron_potentials_w.h: Trying to cut down on the gazillion
	  copy constructors.  Made all the QllBlock and HeavyMesonBlock
	  objects passed by const&.  Added some more const's to the classes
	  to make the compiler happy.  Should be no functional change -
	  just passing objects in by reference instead of value - the
	  values are not changed via side effects.

2008-12-21 16:22  edwards

	* lib/meas/hadron/: barQll_w.cc, heavy_hadron_potentials_w.cc,
	  heavy_hadron_potentials_w.h, heavy_hadrons_su3_w.cc,
	  heavy_hadrons_su3_w.h, mesQlPOT_w.cc, mesQlPOT_w.h, mesQl_w.cc,
	  mesQl_w.h, npr_vertex_w.cc, npr_vertex_w.h, qqbar_w.cc,
	  qqbar_w.h, qqq_w.cc: Some code cleanups. Put in chroma namespace.
	  Moved around the chromabase.h include.

2008-12-21 16:03  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Moved include of chromabase
	  into the .h file.

2008-12-20 01:36  kostas

	* lib/meas/inline/hadron/inline_create_colorvecs.cc: bug fix

2008-12-20 01:23  kostas

	* lib/meas/inline/hadron/inline_create_colorvecs.cc: works

2008-12-19 13:07  kostas

	* lib/meas/inline/hadron/inline_create_colorvecs.cc: fixed bugs

2008-12-19 12:43  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_create_colorvecs.cc,
	  meas/inline/hadron/inline_create_colorvecs.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc: task for debugging

2008-12-15 14:24  kostas

	* lib/: actions/ferm/invert/syssolver_linop_OPTeigcg.h,
	  meas/inline/hadron/inline_disco_eigcg_w.cc,
	  meas/inline/hadron/inline_disco_eigcg_w.h: disco now reads eigcg
	  eigenvectors

2008-12-15 11:45  kostas

	* lib/: actions/ferm/invert/containers.h,
	  actions/ferm/invert/syssolver_linop_OPTeigcg.h,
	  meas/inline/io/qio_read_obj_funcmap.cc,
	  meas/inline/io/qio_write_obj_funcmap.cc: eigCG now writes and
	  reads vectors from and to disk (this OPTeigCG) all works in
	  single precision. One needs to extend to double but this also
	  requires a double precision eigCG

2008-12-15 00:02  kostas

	* lib/actions/ferm/invert/: containers.h,
	  syssolver_OPTeigcg_params.cc, syssolver_OPTeigcg_params.h,
	  syssolver_eigcg_params.cc, syssolver_eigcg_params.h,
	  syssolver_linop_OPTeigcg.h: started evec IO code (not working
	  yet)

2008-12-13 08:27  kostas

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: simplified logic

2008-12-12 23:42  kostas

	* lib/meas/inline/hadron/inline_disco_eigcg_w.cc: got the opperator
	  from the action

2008-12-12 18:04  kostas

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_eigcg_w.h: added the action descriptor in the input

2008-12-12 12:11  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_disco_eigcg_w.cc,
	  meas/inline/hadron/inline_disco_eigcg_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc: added disco eigcg
	  in compilation tree

2008-12-12 11:41  kostas

	* lib/meas/inline/hadron/: inline_disco_eigcg_w.cc,
	  inline_disco_eigcg_w.h: added disco with eig-vector

2008-12-11 23:13  kostas

	* lib/meas/inline/hadron/inline_grid_prop_w.cc: comment

2008-12-11 23:05  kostas

	* lib/meas/inline/hadron/inline_meson_grid_matelem_w.cc: small
	  change

2008-12-11 22:54  kostas

	* lib/meas/inline/hadron/: inline_meson_grid_matelem_w.cc,
	  inline_meson_grid_matelem_w.h: implemented symmetric smearing

2008-12-09 23:52  kostas

	* lib/actions/ferm/invert/containers.h: added a conversion function
	  from OPTEigCG vectors to LatticeFermions

2008-12-06 09:48  kostas

	* lib/meas/inline/hadron/inline_disco_w.cc: changed so that
	  everything is kept in memory in a map. the timing is the same as
	  before where I wrote everything to disk as it goes allong

2008-12-06 01:51  kostas

	* lib/meas/inline/hadron/inline_disco_w.cc: [no log message]

2008-12-06 01:39  kostas

	* lib/meas/inline/hadron/inline_disco_w.cc: compiles and runs

2008-12-05 21:24  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_disco_w.cc,
	  meas/inline/hadron/inline_hadron_aggregate.cc: compiles now

2008-12-05 20:14  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_disco_w.cc: modified
	  make files`1 CV:
	  ----------------------------------------------------------------------

2008-12-05 20:00  kostas

	* lib/meas/inline/hadron/: inline_disco_w.cc, inline_disco_w.h:
	  started code for disconnected diagrams

2008-12-03 16:16  kostas

	* lib/meas/hadron/dilution_quark_source_const_w.cc: fixed bug that
	  made regressions fail

2008-12-01 09:25  kostas

	* lib/meas/sources/diluteGrid_source_const.cc: bug fix

2008-12-01 09:19  kostas

	* lib/meas/sources/diluteGrid_source_const.cc: bug fix

2008-11-30 22:18  kostas

	* lib/meas/inline/hadron/inline_meson_grid_matelem_w.cc: ..

2008-11-30 22:09  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_meson_grid_matelem_w.cc,
	  meas/inline/hadron/inline_meson_grid_matelem_w.h: added meson
	  operators for grid sources

2008-11-29 07:39  kostas

	* lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: bug fix

2008-11-28 23:28  kostas

	* lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: ...

2008-11-28 13:18  kostas

	* lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: ...

2008-11-28 09:48  kostas

	* lib/meas/: inline/hadron/inline_grid_prop_matelem_w.cc,
	  sources/diluteGrid_source_const.cc: changed source masking

2008-11-28 00:56  kostas

	* lib/meas/inline/hadron/inline_grid_prop_matelem_w.cc: ...

2008-11-28 00:13  kostas

	* lib/: Makefile.am,
	  meas/inline/hadron/inline_grid_prop_matelem_w.cc,
	  meas/inline/hadron/inline_grid_prop_matelem_w.h,
	  meas/inline/hadron/inline_grid_prop_w.cc,
	  meas/inline/hadron/inline_grid_prop_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc: added more

2008-11-27 00:49  kostas

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: added IO for eigCG vectors (this is
	  tricky... for portability we should convert them to
	  LatticeFermions for saving and when reading back in convert them
	  to EigCG format. For the moment on can only use these vector when
	  running on the same machine geometry as when produced)

2008-11-26 22:22  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_grid_prop_w.cc,
	  meas/inline/hadron/inline_grid_prop_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/sources/diluteGrid_source_const.cc,
	  meas/sources/diluteGrid_source_const.h,
	  util/ferm/key_grid_prop.cc, util/ferm/key_grid_prop.h: added grid
	  sources

2008-11-26 01:23  kostas

	* lib/: Makefile.am, meas/sources/diluteGrid_source_const.cc,
	  meas/sources/diluteGrid_source_const.h,
	  meas/sources/source_const_aggregate.cc, meas/sources/sources.h:
	  added new source

2008-11-25 22:20  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: improved IO and
	  src caching

2008-11-25 17:31  kostas

	* lib/meas/hadron/: dilution_quark_source_const_w.cc,
	  dilution_quark_source_const_w.h: added flag to switch off
	  smearing if it is present. This should not affect the past
	  functionality and should not break anything... (I hope!)

2008-11-25 11:15  edwards

	* tests/spectrum_s/: spectrum_s.out.xml, spectrum_s_HISQ.out.xml:
	  Updated regressions.

2008-11-25 11:10  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Fixed metric.

2008-11-25 09:13  bjoo

	* other_libs/cpp_wilson_dslash/: include/cpp_dslash_qdp_packer.h,
	  include/cpp_dslash_scalar.h, include/shift_table_scalar.h,
	  lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc,
	  lib/shift_table_scalar.cc, tests/testDslashFull.cc,
	  tests/testvol.h, tests/timeDslash.cc: OK Committing this. The
	  Clover Doesnt work in Scalar QMT Mode just now...

2008-11-24 23:50  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Updated regressions.

2008-11-22 17:18  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Fixed regression.

2008-11-22 17:17  edwards

	* lib/meas/inline/hadron/inline_static_prop_colorvec_w.cc: Fixed.
	  Now passes gauge invariance.

2008-11-22 14:14  edwards

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_static_prop_colorvec_w.cc,
	  meas/inline/hadron/inline_static_prop_colorvec_w.h: Added
	  inline_static_prop_colorvec - a static quark prop.

2008-11-22 14:13  edwards

	* lib/meas/smear/: displace.cc, displace.h: Added displace of
	  LatticeColorMatrix.

2008-11-22 14:12  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.metric.xml, colorvec_matelem.out.xml: Added new
	  static prop tests.

2008-11-22 00:05  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: fixed xml user
	  data

2008-11-21 23:45  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: hope it works
	  now...

2008-11-21 22:17  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: added sol-src
	  mesons

2008-11-21 12:30  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: now baryons are
	  in (changed to hash tables which probably is not a good idea for
	  baryons...)

2008-11-19 22:53  kostas

	* lib/meas/inline/hadron/inline_prop_3pt_w.cc: added gauge info in
	  the header

2008-11-19 13:58  kostas

	* lib/meas/inline/hadron/: inline_stoch_hadron_w.cc,
	  inline_stoch_hadron_w.h: ...

2008-11-18 22:33  kostas

	* lib/meas/inline/hadron/: inline_prop_3pt_w.h,
	  inline_stoch_hadron_w.cc, inline_stoch_hadron_w.h: fixed
	  compilation bug and added stuff

2008-11-18 17:28  kostas

	* lib/meas/inline/hadron/inline_prop_3pt_w.cc: now one can have as
	  many quarks as you want. The operator specifies the insertion
	  time and the code will insert the operator to all quarks that
	  have this time as source. If none is found the code will die...

2008-11-17 13:22  kostas

	* lib/meas/inline/hadron/inline_prop_3pt_w.cc: fixed the problem...
	  now I need to take care of the case where multiple timeslices
	  exist in the dilution scheam. This will allow insertion of
	  derivative operators with time links

2008-11-16 23:44  kostas

	* aclocal.m4, configure,
	  lib/meas/inline/hadron/inline_prop_3pt_w.cc: hopefully fixed
	  prop_3pt seg-fault

2008-11-16 12:02  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac, lib/Makefile.am,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive_dtau.cc,
	  lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive_dtau.h,
	  lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive_dtau.cc,
	  lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive_dtau.h,
	  tests/t_leapfrog/regres.pl,
	  tests/t_leapfrog/t_leapfrog.sts_min_norm_2_dtau.ini.xml,
	  tests/t_leapfrog/t_leapfrog.sts_min_norm_2_dtau.log.xml,
	  tests/t_leapfrog/t_leapfrog.tst_min_norm_2_dtau.ini.xml,
	  tests/t_leapfrog/t_leapfrog.tst_min_norm_2_dtau.log.xml: Added
	  STS and TST Min Norm 2 integrators that are based on
	  delta_tau_max rather than on n_steps

2008-11-12 10:31  edwards

	* scripts/check_regres_runner.pl: Changed to support output_dir.

2008-11-11 19:25  edwards

	* tests/chroma/hadron/:
	  stoch_group_baryon/make_baryon_ops.metric.xml,
	  stoch_group_baryon/regres.pl,
	  stoch_group_baryon/stoch_group_baryon.out.xml,
	  stoch_group_meson/make_meson_ops.metric.xml,
	  stoch_group_meson/regres.pl: Fixed regressions.

2008-11-11 18:13  edwards

	* scripts/run_chroma_xmldiff.pl: Added support for an output_dir.

2008-11-11 16:49  edwards

	* tests/chroma/hadron/sink_smear/sink-deriv.out.xml: Updated
	  regression output.

2008-11-11 16:48  edwards

	* tests/chroma/hadron/make_source/source-deriv.out.xml: Updated
	  regression tests.

2008-11-11 16:44  tag chroma3-31-1

2008-11-11 16:44  edwards

	* aclocal.m4, configure: Induced changes

2008-11-11 16:44  edwards

	* configure.ac: Changed to 3.31.1

2008-11-11 16:43  edwards

	* NEWS: Info on 3.31.1

2008-11-11 16:41  edwards

	* tests/chroma/hadron/: building_blocks/bb-deriv.out.xml,
	  seqsource/seqsource-derivmeson.out.xml: Updated regression tests.

2008-11-11 16:31  edwards

	* aclocal.m4, configure: Induced changes

2008-11-11 16:27  edwards

	* lib/: meas/hadron/deriv_meson_seqsrc_w.cc,
	  meas/hadron/deriv_meson_seqsrc_w.h,
	  meas/smear/deriv_quark_displacement_w.cc, util/ferm/etensor.cc,
	  util/ferm/etensor.h: Changed ETensor to the correct form
	  (arxiv:0707.4162v2) involving sqrt(2)'s.  The old form has +-1
	  (wrong). Overhauled the derivative mesons so that all the 3pt
	  seqsrcs go through a few basic routines. The old and new codes
	  pass the seqprop tests (meaning 3pt at source is equal to 2pt at
	  sink) for every 3pt and every valid direction. Checked the
	  building blocks (using strip_buildingblocks) for sink_mom=100,
	  mom2_max=1, for all 3-pt sources and directions. The only
	  difference between old and new is in the E irreps which is the
	  expected result. Do not have another verification for the
	  seqprops for the "E", other than to check the 2pt themselves.

2008-11-11 11:55  tag chroma3-31-0

2008-11-11 11:55  edwards

	* NEWS: Info on 3.31.0

2008-11-11 11:53  edwards

	* configure: Induced changes

2008-11-11 11:53  edwards

	* configure.ac: Oops, changed to 3.31.0

2008-11-11 11:50  edwards

	* aclocal.m4: Induced changes

2008-11-11 11:50  edwards

	* configure.ac: Changed to 3.32.0

2008-11-10 17:05  jbulava

	* lib/meas/smear/vector_quark_smearing.h: Fixed a bug in
	  getDecayExtent()

2008-11-10 12:59  bjoo

	* lib/: actions/ferm/fermacts/clover_fermact_params_w.cc,
	  actions/ferm/fermacts/clover_fermact_params_w.h,
	  actions/ferm/linop/eoprec_clover_linop_w.cc,
	  update/molecdyn/monomial/eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.cc:
	  Added optional twisted M to the clover LinOp. Relaxed Fermion
	  Action in the hasenbusch monomial to not need a constant
	  determinant -- otherwise it can't do clover. Checked the
	  conventions: Action <=> numerator in determinant <=> denominator
	  in action. ActionPrec <=> denominator in determinant. Numerator
	  in action

2008-11-09 19:15  kostas

	* tests/chroma/hadron/make_source/dilute-smear.ini.xml: sample
	  input for diluted zN smeared source

2008-11-09 19:04  kostas

	* aclocal.m4, configure, lib/meas/sources/dilutezN_source_const.cc,
	  lib/meas/sources/dilutezN_source_const.h: added smeared diluted
	  source

2008-11-04 13:43  edwards

	* lib/: io/qprop_io.cc,
	  meas/hadron/dilution_quark_source_const_w.cc,
	  meas/hadron/stoch_cond_cont_w.cc,
	  meas/inline/hadron/inline_hadspec_w.cc,
	  meas/inline/hadron/inline_heavyhadspec_w.cc,
	  meas/inline/hadron/inline_static_light_spec_w.cc,
	  meas/inline/hadron/inline_stoch_baryon_w.cc,
	  meas/inline/hadron/inline_stoch_meson_w.cc,
	  meas/sinks/pt_sink_smearing.cc, meas/sinks/pt_sink_smearing.h,
	  meas/sinks/sh_sink_smearing.cc, meas/sinks/sh_sink_smearing.h,
	  meas/sinks/wall_sink_smearing.cc,
	  meas/sinks/wall_sink_smearing.h, meas/smear/ape_link_smearing.cc,
	  meas/smear/ape_link_smearing.h,
	  meas/smear/gamma_displacement_w.cc,
	  meas/smear/gamma_displacement_w.h,
	  meas/smear/gaus_quark_smearing.cc,
	  meas/smear/gaus_quark_smearing.h,
	  meas/smear/hyp_link_smearing.cc, meas/smear/hyp_link_smearing.h,
	  meas/smear/link_smearing_aggregate.cc,
	  meas/smear/no_link_smearing.cc, meas/smear/no_link_smearing.h,
	  meas/smear/no_quark_displacement.cc,
	  meas/smear/no_quark_displacement.h,
	  meas/smear/no_quark_smearing.cc, meas/smear/no_quark_smearing.h,
	  meas/smear/quark_displacement_aggregate.cc,
	  meas/smear/quark_smearing_aggregate.cc,
	  meas/smear/simple_quark_displacement.cc,
	  meas/smear/simple_quark_displacement.h,
	  meas/smear/stout_link_smearing.cc,
	  meas/smear/stout_link_smearing.h,
	  meas/smear/vector_quark_smearing.cc,
	  meas/smear/vector_quark_smearing.h,
	  meas/sources/dilutezN_source_const.cc,
	  meas/sources/dilutezN_source_const.h,
	  meas/sources/mom_source_const.cc,
	  meas/sources/mom_source_const.h,
	  meas/sources/partwall_source_const.cc,
	  meas/sources/partwall_source_const.h,
	  meas/sources/pt_source_const.cc, meas/sources/pt_source_const.h,
	  meas/sources/pt_source_smearing.cc,
	  meas/sources/pt_source_smearing.h,
	  meas/sources/rndz2wall_source_const.cc,
	  meas/sources/rndz2wall_source_const.h,
	  meas/sources/sf_pt_source_const.cc,
	  meas/sources/sf_pt_source_const.h,
	  meas/sources/sf_sh_source_const.cc,
	  meas/sources/sf_sh_source_const.h,
	  meas/sources/sf_wall_source_const.cc,
	  meas/sources/sf_wall_source_const.h,
	  meas/sources/sh_source_const.cc, meas/sources/sh_source_const.h,
	  meas/sources/sh_source_smearing.cc,
	  meas/sources/sh_source_smearing.h,
	  meas/sources/wall_source_const.cc,
	  meas/sources/wall_source_const.h: Removed use of "extern string
	  name" from the measurement routines.	Now use an explicit
	  getName() function.

2008-11-04 13:42  edwards

	* lib/actions/ferm/: fermacts/eoprec_twm_fermact_array_w.cc,
	  fermacts/eoprec_twm_fermact_array_w.h,
	  fermacts/unprec_twm_fermact_array_w.cc,
	  fermacts/unprec_twm_fermact_array_w.h,
	  linop/eoprec_twm_linop_array_w.cc,
	  linop/eoprec_twm_linop_array_w.h: First start at a twisted mass
	  in array form.

2008-11-04 12:26  edwards

	* lib/meas/smear/: vector_quark_smearing.cc,
	  vector_quark_smearing.h, vector_smear.cc, vector_smear.h: Did
	  some indenting.

2008-11-01 21:19  edwards

	* scripts/test_runners/7n_mpirun_rsh_runner.sh.in: Changed
	  regression nodes.

2008-10-30 10:57  edwards

	* lib/meas/inline/hadron/inline_unit_prop_colorvec_w.cc: Bug fix.

2008-10-30 10:47  edwards

	* lib/meas/inline/io/inline_eigen_lime_colvec_read_obj.cc: Put in
	  checks on eigenvalues tag name.

2008-10-30 10:30  edwards

	* aclocal.m4, configure: Induced changes

2008-10-30 10:30  edwards

	* lib/Makefile.am: Added vector_smear and vector_quark_smearing.

2008-10-29 16:30  edwards

	* lib/meas/inline/hadron/inline_prop_3pt_w.cc: Bug fix. Removed a
	  conj around the solution vector.

2008-10-29 15:42  jbulava

	* lib/meas/smear/: quark_smearing_aggregate.cc,
	  vector_quark_smearing.cc, vector_quark_smearing.h,
	  vector_smear.cc, vector_smear.h: support for a quark smearing
	  scheme which consits of an outer product of subset lattice color
	  vectors. This scheme also contains exponential smearing weights.

2008-10-28 22:12  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Turned on
	  UnitPropColorVec.

2008-10-28 17:36  edwards

	* lib/Makefile.am: Added inline_unit_prop_colorvec.

2008-10-28 17:34  edwards

	* lib/meas/inline/hadron/: inline_unit_prop_colorvec_w.cc,
	  inline_unit_prop_colorvec_w.h: Propagator that is the identity
	  matrix.

2008-10-24 11:26  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml:
	  Updated regression.

2008-10-24 10:13  jbulava

	* tests/chroma/hadron/stoch_group_baryon/:
	  stoch_group_baryon.ini.pl, stoch_group_baryon.ini.xml: Forgot to
	  check in the changes to the perl script and input file yesterday.

2008-10-23 15:32  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: I think I
	  fixed the long standing bug. The input xml files will change
	  however.

2008-10-19 01:19  kostas

	* lib/meas/inline/hadron/inline_prop_3pt_w.cc: working

2008-10-19 00:48  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_prop_3pt_w.cc,
	  lib/meas/inline/hadron/inline_prop_3pt_w.h: compiles now

2008-10-18 10:18  kostas

	* lib/meas/inline/hadron/inline_prop_3pt_w.cc: ...

2008-10-18 00:15  kostas

	* lib/meas/inline/hadron/: inline_prop_3pt_w.cc,
	  inline_prop_3pt_w.h: ...

2008-10-15 16:09  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Added missing "mass_label" xml input.

2008-10-15 14:56  kostas

	* lib/meas/inline/hadron/: inline_prop_3pt_w.cc,
	  inline_prop_3pt_w.h: [no log message]

2008-10-15 12:08  edwards

	* lib/Makefile.am: Removed spurious backslash.

2008-10-08 15:42  bjoo

	* lib/: Makefile.am, central_tprec_fermact_w.h,
	  central_tprec_linop.h, iluprec_s_cprec_t_wilstype_fermact_w.h:
	  Some more mods

2008-10-08 15:40  bjoo

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  fermacts/fermacts_w.h,
	  fermacts/ilu2prec_s_cprec_t_clover_fermact_w.cc,
	  fermacts/ilu2prec_s_cprec_t_clover_fermact_w.h,
	  fermacts/ilu2prec_s_cprec_t_wilson_fermact_w.cc,
	  fermacts/ilu2prec_s_cprec_t_wilson_fermact_w.h,
	  invert/minvcg2_accum.cc,
	  linop/ilu2prec_s_cprec_t_clover_linop_w.cc,
	  linop/ilu2prec_s_cprec_t_clover_linop_w.h,
	  linop/ilu2prec_s_cprec_t_wilson_linop_w.cc,
	  linop/ilu2prec_s_cprec_t_wilson_linop_w.h,
	  linop/ilu2prec_s_cprec_t_wilsonlike_linop_w.h,
	  linop/iluprec_s_cprec_t_wilsonlike_linop_w.h, linop/linop_w.h,
	  qprop/central_tprec_fermact_qprop_w.cc: Added Mike style
	  preconditioning

2008-10-06 11:52  jbulava

	* lib/meas/inline/io/inline_eigen_lime_colvec_read_obj.cc: Fixed
	  the output of laplace_eigs. Induced changes in the reader here.

2008-10-04 15:49  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml:
	  Updated regression output.

2008-10-04 15:38  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Changed first task to a unit vectors.

2008-10-02 10:51  bjoo

	* other_libs/cpp_wilson_dslash/: configure, configure.ac,
	  tests/testClover.cc, tests/timeClover.cc: stuff

2008-10-02 10:51  bjoo

	* other_libs/cpp_wilson_dslash/include/: Makefile.am,
	  cpp_clover_site_apply_32bit.h, cpp_clover_site_apply_32bit_c.h,
	  cpp_clover_site_apply_32bit_sse.h, cpp_clover_site_apply_64bit.h,
	  cpp_clover_site_apply_64bit_c.h,
	  cpp_clover_site_apply_64bit_sse.h, dslash_config_internal.h.in:
	  Added SSE clover applies. Single prec one seems slow still, needs
	  improving

2008-10-01 16:54  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml:
	  Fixed regression output.

2008-10-01 16:50  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Added missing pop(xml).

2008-09-27 23:13  edwards

	* lib/meas/inline/hadron/inline_genprop_matelem_colorvec_w.cc:
	  Fixed xml output.

2008-09-27 01:14  edwards

	* lib/meas/inline/hadron/: inline_genprop_matelem_colorvec_w.cc,
	  inline_genprop_matelem_colorvec_w.h, inline_hadron_aggregate.cc:
	  First running version of inline_genprop_matelem. Hooked it in.

2008-09-27 01:14  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc:
	  Simplified the check of the displacements.

2008-09-27 01:13  edwards

	* lib/meas/smear/: displace.cc, displace.h: More displace array
	  path variants.

2008-09-27 01:12  edwards

	* lib/Makefile.am: Added inline_genprop_matelem

2008-09-27 01:12  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: New regression output.

2008-09-26 17:15  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed
	  cache size and page size of DB

2008-09-26 16:44  edwards

	* lib/meas/inline/hadron/inline_baryon_matelem_colorvec_w.cc:
	  Changed DB cache size to 10MB

2008-09-26 16:43  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc:
	  Changed DB cache size to 10MB.

2008-09-26 15:57  tag chroma3-30-4

2008-09-26 15:57  edwards

	* aclocal.m4, configure: Induced changes

2008-09-26 15:57  edwards

	* NEWS: Info on 3.31.4

2008-09-26 15:56  edwards

	* configure.ac: Changed to 3.31.4

2008-09-26 15:54  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_genprop_matelem_colorvec_w.cc,
	  inline_genprop_matelem_colorvec_w.h,
	  inline_meson_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.cc: Changed data format for
	  prop_matelem, meson_matelem, baryon_matelem.	Now use a fixed
	  size db. The colorvec indices are pushed down into the value.

2008-09-26 15:53  edwards

	* lib/meas/smear/: displace.cc, displace.h: Added a displace for
	  paths of displacements.

2008-09-26 15:53  edwards

	* lib/meas/smear/: displacement.cc, displacement.h: Some
	  rearrangements. No real change.

2008-09-26 15:48  tag chroma3-30-3

2008-09-26 15:48  edwards

	* aclocal.m4, configure: Induced changes

2008-09-26 15:48  edwards

	* NEWS: Info on 3.31.3

2008-09-26 15:47  edwards

	* configure.ac: Changed to 3.31.3

2008-09-26 15:47  edwards

	* configure.ac: Changed to 3.31.1

2008-09-26 11:56  bjoo

	* other_libs/cpp_wilson_dslash/: include/Makefile.am,
	  include/cpp_clover.h, tests/testClover.cc, tests/timeClover.cc:
	  Minor Tidyup.

2008-09-26 11:45  bjoo

	* other_libs/cpp_wilson_dslash/: include/Makefile.am,
	  include/cpp_clover_odd_odd_parscalar_32bit.h,
	  include/cpp_clover_odd_odd_parscalar_64bit.h,
	  include/cpp_clover_parscalar.h,
	  include/cpp_clover_site_apply_32bit.h,
	  include/cpp_clover_site_apply_64bit.h,
	  include/cpp_dslash_parscalar_decomp_64bit_c.h,
	  include/cpp_dslash_parscalar_decomp_64bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_64bit_c.h,
	  include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_32bit_c.h,
	  include/cpp_dslash_parscalar_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_64bit_c.h,
	  include/cpp_dslash_parscalar_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_utils_32bit.h,
	  include/cpp_dslash_parscalar_utils_64bit.h,
	  include/dispatch_parscalar.h, lib/Makefile.am,
	  lib/cpp_clover_parscalar_32bit.cc,
	  lib/cpp_clover_parscalar_64bit.cc,
	  lib/cpp_clover_scalar_32bit.cc, lib/cpp_clover_scalar_64bit.cc,
	  lib/cpp_dslash_parscalar_32bit.cc,
	  lib/cpp_dslash_parscalar_64bit.cc,
	  lib/cpp_dslash_parscalar_utils_32bit.cc,
	  lib/cpp_dslash_parscalar_utils_64bit.cc,
	  lib/dispatch_parscalar.cc, lib/dispatch_parscalar_openmp.cc,
	  lib/dispatch_parscalar_qmt.cc, tests/testClover.cc,
	  tests/timeClover.cc: First cut at the clover stuff

2008-09-25 21:19  jbulava

	* lib/util/ferm/subset_vectors.cc: Fixed xml io for eigenvalue
	  weights.

2008-09-25 15:59  edwards

	* lib/meas/inline/io/inline_eigen_lime_colvec_read_obj.cc: Fixed
	  pathname.

2008-09-24 16:01  bjoo

	* other_libs/cpp_wilson_dslash/: aclocal.m4, configure,
	  include/Makefile.am, include/cpp_clover_scalar.h,
	  include/cpp_clover_site_apply_32bit.h,
	  include/cpp_clover_site_apply_64bit.h,
	  include/cpp_clover_types.h, include/dispatch_scalar.h,
	  lib/Makefile.am, lib/cpp_clover_scalar_32bit.cc,
	  lib/cpp_clover_scalar_64bit.cc, lib/dispatch_scalar.cc,
	  lib/dispatch_scalar_openmp.cc, lib/dispatch_scalar_qmt.cc,
	  tests/Makefile.am, tests/t_clover.cc, tests/testClover.cc,
	  tests/testClover.h, tests/testvol.h, tests/timeClover.cc,
	  tests/timeClover.h, tests/time_clover.cc: Added scalar clover
	  stuff

2008-09-22 23:10  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Added a second time source to the
	  tests.

2008-09-22 13:23  bjoo

	* other_libs/cpp_wilson_dslash/: aclocal.m4, configure,
	  include/cache.h, lib/shift_table_scalar.cc, tests/testvol.h,
	  tests/timeDslash.cc: OK

2008-09-16 11:13  bjoo

	* other_libs/cpp_wilson_dslash/include/shift_table_3d_scalar.h:
	  Modified this for compilation with newerr gcc and Intel compilers

2008-09-16 11:11  bjoo

	* other_libs/cpp_wilson_dslash/include/:
	  cpp_dslash_matvec32bit_c.h, cpp_dslash_matvec64bit_c.h,
	  cpp_dslash_scalar_32bit_c.h, cpp_dslash_scalar_64bit_c.h:
	  Rearranged matmults. Rearranged storage order on scalar targets

2008-09-15 15:44  bjoo

	* other_libs/cpp_wilson_dslash/include/cpp_dslash_matvec64bit_c.h:
	  Fully Unrolled 64bit matmult

2008-09-15 14:01  bjoo

	* other_libs/cpp_wilson_dslash/include/: cpp_dslash_scalar_types.h,
	  cpp_dslash_types.h: Oops

2008-09-15 13:10  bjoo

	* other_libs/cpp_wilson_dslash/include/: cpp_dslash_scalar_32bit.h,
	  cpp_dslash_scalar_64bit.h: Hopefully no longer broken

2008-09-15 13:09  bjoo

	* other_libs/cpp_wilson_dslash/: configure, configure.ac,
	  include/Makefile.am, include/cpp_dslash_parscalar_utils_32bit.h,
	  include/cpp_dslash_parscalar_utils_64bit.h,
	  include/cpp_dslash_scalar_32bit.h,
	  include/cpp_dslash_scalar_32bit_sse.h,
	  include/cpp_dslash_scalar_64bit.h,
	  include/cpp_dslash_scalar_64bit_sse.h,
	  include/dslash_config_internal.h.in,
	  lib/cpp_dslash_3d_scalar_32bit.cc,
	  lib/cpp_dslash_3d_scalar_64bit.cc,
	  lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc:
	  Added automagic, but broken

2008-09-14 11:33  edwards

	* tests/chroma/io/qio_write_obj/: qio_write_obj.ini.xml,
	  qio_write_obj.out.xml: Updated regressions.

2008-09-14 11:27  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Updated according to new regressions.

2008-09-13 22:26  edwards

	* lib/meas/inline/io/: inline_io_aggregate.cc, inline_rng.cc,
	  inline_rng.h: Added inline_rng - set the RNG seed.

2008-09-13 22:25  edwards

	* lib/Makefile.am: Added inline_rng.{h,cc}.

2008-09-13 17:40  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Added
	  a comment.

2008-09-13 17:39  edwards

	* lib/meas/inline/hadron/inline_gauge_transf_obj.cc: Added gauge
	  rotation of  SubsetVectors.

2008-09-13 17:35  jbulava

	* tests/chroma/hadron/stoch_group_baryon/:
	  stoch_group_baryon.ini.pl, stoch_group_baryon.ini.xml:
	  Temporarily diabled the test of STOCH_GROUP_BARYON

2008-09-13 16:18  edwards

	* lib/meas/inline/io/qio_read_obj_funcmap.cc: Fixed the
	  subsetvectors reader.

2008-09-13 16:17  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Updated regression tests.

2008-09-13 15:57  edwards

	* lib/util/ferm/: subset_vectors.cc, subset_vectors.h: New class
	  for holding subsets of vectors and their associate weights.

2008-09-13 15:56  edwards

	* lib/meas/inline/: hadron/inline_baryon_matelem_colorvec_w.cc,
	  hadron/inline_meson_matelem_colorvec_w.cc,
	  hadron/inline_prop_colorvec_w.cc,
	  hadron/inline_prop_matelem_colorvec_w.cc,
	  io/inline_eigen_bin_colvec_read_obj.cc,
	  io/inline_eigen_lime_colvec_read_obj.cc,
	  io/inline_gaussian_obj.cc, io/qio_read_obj_funcmap.cc,
	  io/qio_write_obj_funcmap.cc: Changed all the uses of EigenInfo
	  for holding time sliced lattice color vectors to a new
	  SubsetVectors class. Added the weights into the meta-data within
	  the dbs.

2008-09-13 15:54  edwards

	* lib/Makefile.am: Added subset_vectors.{h,cc}

2008-09-13 15:15  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Fixed the
	  segfault for version=1. version=2 works fine as well. Xml for
	  this version forthcoming

2008-09-12 18:59  bjoo

	* other_libs/cpp_wilson_dslash/: include/Makefile.am,
	  include/cpp_dslash_matvec32bit_c.h,
	  include/cpp_dslash_matvec64bit_c.h,
	  include/cpp_dslash_parscalar.h,
	  include/cpp_dslash_parscalar_decomp_32bit_c.h,
	  include/cpp_dslash_parscalar_decomp_32bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_64bit_c.h,
	  include/cpp_dslash_parscalar_decomp_64bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_hvv_32bit_c.h,
	  include/cpp_dslash_parscalar_decomp_hvv_32bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_hvv_64bit_c.h,
	  include/cpp_dslash_parscalar_decomp_hvv_64bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_32bit_c.h,
	  include/cpp_dslash_parscalar_mvv_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_64bit_c.h,
	  include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_32bit_c.h,
	  include/cpp_dslash_parscalar_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_64bit_c.h,
	  include/cpp_dslash_parscalar_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_types.h,
	  include/cpp_dslash_parscalar_utils_32bit.h,
	  include/cpp_dslash_parscalar_utils_64bit.h,
	  include/cpp_dslash_scalar.h, include/cpp_dslash_scalar_32bit.h,
	  include/cpp_dslash_scalar_32bit_c.h,
	  include/cpp_dslash_scalar_64bit.h,
	  include/cpp_dslash_scalar_64bit_c.h,
	  lib/cpp_dslash_3d_scalar_32bit.cc,
	  lib/cpp_dslash_3d_scalar_64bit.cc,
	  lib/cpp_dslash_parscalar_32bit.cc,
	  lib/cpp_dslash_parscalar_3d_32bit.cc,
	  lib/cpp_dslash_parscalar_3d_64bit.cc,
	  lib/cpp_dslash_parscalar_64bit.cc,
	  lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc,
	  tests/testDslash3D.cc, tests/testDslashFull.cc: Added C equiv for
	  scalar and parscalar. Fixed dp tests which were not really
	  testing anything. Automagic needed to select sse version or C
	  version. C version hardwired for now. Want to unroll loops in the
	  64bit matmults

2008-09-12 16:14  jbulava

	* lib/Makefile.am: Induced changes

2008-09-12 16:10  edwards

	* lib/meas/inline/io/inline_gaussian_obj.cc: Added a unit
	  initialization of eigeinfo for latticecolorvector.

2008-09-12 15:47  jbulava

	* lib/meas/inline/io/: inline_eigen_lime_colvec_read_obj.cc,
	  inline_eigen_lime_colvec_read_obj.h, inline_io_aggregate.cc:
	  Added routines to handle io for eigenvectors in a lime file.

2008-09-11 19:46  bjoo

	* other_libs/cpp_wilson_dslash/include/:
	  cpp_dslash_scalar_32bit_c.h, cpp_dslash_scalar_64bit_c.h:
	  C-versions with no SSE

2008-09-10 17:27  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed an other bug

2008-09-10 17:24  kostas

	* tests/chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml: new output

2008-09-10 10:44  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed
	  header line of task (for output).

2008-09-09 17:11  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed an other bug

2008-09-09 16:35  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed a bug...

2008-09-09 16:30  kostas

	* lib/meas/: hadron/qqq_w.cc, hadron/qqq_w.h,
	  inline/hadron/inline_qqqNucNuc_w.cc,
	  inline/hadron/inline_qqqNucNuc_w.h: added Decuplet to NPLQCD code

2008-09-08 17:39  edwards

	* tests/regres.pl: Changed stoch_meson and stoch_baryon regres dirs
	  to stoch_group_meson and stoch_group_baryon.

2008-09-08 17:38  edwards

	* tests/chroma/hadron/stoch_group_baryon/:
	  make_baryon_ops.metric.xml, regres.pl: Update regression tests.

2008-09-08 17:37  edwards

	* tests/chroma/hadron/stoch_group_meson/:
	  make_meson_ops.metric.xml, regres.pl,
	  stoch_group_meson.metric.xml: Updated regression tests.

2008-09-08 17:37  edwards

	* scripts/run_chroma_xmldiff.pl: Added ability to copy over
	  auxilliary files.

2008-09-08 16:05  bjoo

	* lib/: actions/ferm/fermacts/fermacts_aggregate_s.cc,
	  actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/invert/multi_syssolver_mdagm_cg.h,
	  update/molecdyn/monomial/one_flavor_rat_monomial_w.h: Committing
	  hooked in accumulating solver into 4D rat_one_flavor monomial,
	  actions etc

2008-09-08 14:40  bjoo

	* lib/actions/ferm/invert/minvcg2_accum.cc,
	  lib/actions/ferm/invert/minvcg_accumulate_array.cc,
	  mainprogs/tests/t_solver_accum.cc: I changed behaviour - I used
	  the norm incorrectly. I hope this is now fixed

2008-09-08 12:03  bjoo

	* tests/t_solver_accum.ini.xml: Input file for t_solver_accum.cc

2008-09-08 12:01  bjoo

	* mainprogs/tests/t_solver_accum.cc: Test Program

2008-09-08 12:00  bjoo

	* lib/fermact.h, lib/stagtype_fermact_s.h, lib/syssolver.h,
	  lib/wilstype_fermact_w.h,
	  lib/actions/ferm/invert/minvcg_accumulate_array.cc,
	  mainprogs/tests/Makefile.am: Accumulating solver ought to work
	  now

2008-09-06 14:36  bjoo

	* lib/: actions/ferm/fermacts/klein_gordon_fermact_s.cc,
	  actions/ferm/qprop/quarkprop4_s.cc,
	  actions/ferm/qprop/quarkprop4_w.cc, Makefile.am: Enabled
	  accumulate versions of the arrays in the qprop files, Makefile

2008-09-06 14:35  bjoo

	* lib/actions/ferm/invert/: minvcg2_accum.cc,
	  minvcg_accumulate_array.cc, minvcg_accumulate_array.h,
	  multi_syssolver_mdagm_accumulate_aggregate.cc,
	  multi_syssolver_mdagm_accumulate_factory.h,
	  multi_syssolver_mdagm_aggregate.cc,
	  multi_syssolver_mdagm_cg_accumulate.cc,
	  multi_syssolver_mdagm_cg_accumulate_array.cc,
	  multi_syssolver_mdagm_cg_accumulate_array.h: Added initial cut of
	  MdagM versions of the accumulate solvers for arrays

2008-09-05 09:59  edwards

	* lib/meas/hadron/: hybmeson_w.cc, hybmeson_w.h: Did some
	  indenting.

2008-09-04 15:13  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Added some more displacements.

2008-09-04 15:11  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Added all 2 link displacements for
	  test.

2008-09-03 09:59  bjoo

	* other_libs/cpp_wilson_dslash/include/:
	  shift_table_3d_parscalar.h, shift_table_parscalar.h: For weird
	  reasons there were oopsies here

2008-09-03 09:50  bjoo

	* other_libs/cpp_wilson_dslash/tests/timeDslash3D.cc: Ooops. Had
	  wrong flopcount in the single prec test here

2008-09-02 16:10  bjoo

	* lib/: Makefile.am, syssolver.h: Added Accumulating Syssolver
	  structure

2008-09-02 16:10  bjoo

	* lib/actions/ferm/invert/: minvcg2_accum.cc, minvcg2_accum.h,
	  multi_syssolver_mdagm.h, multi_syssolver_mdagm_accumulate.h,
	  multi_syssolver_mdagm_accumulate_aggregate.cc,
	  multi_syssolver_mdagm_accumulate_aggregate.h,
	  multi_syssolver_mdagm_accumulate_factory.h,
	  multi_syssolver_mdagm_cg.h,
	  multi_syssolver_mdagm_cg_accumulate.cc,
	  multi_syssolver_mdagm_cg_accumulate.h: Added Accumulating
	  Syssolver first cut. 4D only so far

2008-08-31 21:44  edwards

	* lib/meas/inline/hadron/: inline_genprop_matelem_colorvec_w.cc,
	  inline_genprop_matelem_colorvec_w.h: First start at a generalized
	  propagator.

2008-08-31 21:44  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Write
	  out lattice size in db file.

2008-08-31 21:43  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.cc: Changed no-displacement to be
	  an empty array.

2008-08-26 22:11  edwards

	* lib/meas/hadron/heavy_hadrons_su3_w.cc: Corrected some arguments
	  to the QllBlock constructors as per the request from Will
	  Detmold.

2008-08-26 16:12  edwards

	* lib/meas/inline/hadron/inline_baryon_matelem_colorvec_w.cc:
	  Changed the cache and page size for the DB.

2008-08-26 15:37  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc:
	  Changed to use a fixed cache and page size.

2008-08-26 09:24  tag start

2008-08-26 09:24  bjoo

	* other_libs/cpp_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure,
	  configure.ac, config/config.guess, config/config.sub,
	  config/depcomp, config/install-sh, config/missing,
	  include/Makefile.am, include/cache.h, include/cpp_dslash.h,
	  include/cpp_dslash_parscalar.h,
	  include/cpp_dslash_parscalar_decomp_32bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_64bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_hvv_32bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_hvv_64bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_types.h,
	  include/cpp_dslash_parscalar_utils_32bit.h,
	  include/cpp_dslash_parscalar_utils_64bit.h,
	  include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h,
	  include/cpp_dslash_scalar_32bit.h,
	  include/cpp_dslash_scalar_64bit.h,
	  include/cpp_dslash_scalar_types.h, include/dispatch_parscalar.h,
	  include/dispatch_scalar.h, include/dslash_config.h,
	  include/dslash_config_internal.h.in,
	  include/shift_table_3d_parscalar.h,
	  include/shift_table_3d_scalar.h, include/shift_table_parscalar.h,
	  include/shift_table_parscalar_types.h,
	  include/shift_table_scalar.h, include/sse_sign_32bit.h,
	  include/sse_sign_64bit.h, include/tables_parscalar.h,
	  lib/Makefile.am, lib/cpp_dslash_3d_scalar_32bit.cc,
	  lib/cpp_dslash_3d_scalar_64bit.cc,
	  lib/cpp_dslash_parscalar_32bit.cc,
	  lib/cpp_dslash_parscalar_3d_32bit.cc,
	  lib/cpp_dslash_parscalar_3d_64bit.cc,
	  lib/cpp_dslash_parscalar_64bit.cc,
	  lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc,
	  lib/dispatch_parscalar.cc, lib/dispatch_parscalar_openmp.cc,
	  lib/dispatch_parscalar_qmt.cc, lib/dispatch_scalar.cc,
	  lib/dispatch_scalar_openmp.cc, lib/dispatch_scalar_qmt.cc,
	  lib/qdp_packer_3d.cc, lib/qdp_packer_nopad.cc,
	  lib/shift_table_scalar.cc, tests/Makefile.am,
	  tests/dslash_3d_w.cc, tests/dslash_3d_w.h, tests/dslashm_w.cc,
	  tests/dslashm_w.h, tests/reunit.cc, tests/reunit.h,
	  tests/sse32.h, tests/sse64.h, tests/t_dslash.cc,
	  tests/t_dslash_3d.cc, tests/t_site_ops_parscalar.cc,
	  tests/t_site_ops_scalar.cc, tests/testDecomp.h,
	  tests/testDecomp32bit.cc, tests/testDecomp64bit.cc,
	  tests/testDecompHvv.h, tests/testDecompHvv32bit.cc,
	  tests/testDecompHvv64bit.cc, tests/testDslash3D.cc,
	  tests/testDslash3D.h, tests/testDslashFull.cc,
	  tests/testDslashFull.h, tests/testMvvRecons.h,
	  tests/testMvvRecons32bit.cc, tests/testMvvRecons64bit.cc,
	  tests/testRecons.h, tests/testRecons32bit.cc,
	  tests/testRecons64bit.cc, tests/testSiteDslash.h,
	  tests/testSiteDslash32bit.cc, tests/testSiteDslash64bit.cc,
	  tests/testvol.h, tests/timeDecomp.cc, tests/timeDecomp.h,
	  tests/timeDslash.cc, tests/timeDslash.h, tests/timeDslash3D.cc,
	  tests/timeDslash3D.h, tests/time_decomp.cc, tests/time_dslash.cc,
	  tests/time_dslash_3d.cc, tests/unittest.h: Initial import

2008-08-26 09:24  bjoo

	* other_libs/cpp_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure,
	  configure.ac, config/config.guess, config/config.sub,
	  config/depcomp, config/install-sh, config/missing,
	  include/Makefile.am, include/cache.h, include/cpp_dslash.h,
	  include/cpp_dslash_parscalar.h,
	  include/cpp_dslash_parscalar_decomp_32bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_64bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_hvv_32bit_sse2.h,
	  include/cpp_dslash_parscalar_decomp_hvv_64bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_mvv_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_32bit_sse2.h,
	  include/cpp_dslash_parscalar_recons_64bit_sse2.h,
	  include/cpp_dslash_parscalar_types.h,
	  include/cpp_dslash_parscalar_utils_32bit.h,
	  include/cpp_dslash_parscalar_utils_64bit.h,
	  include/cpp_dslash_qdp_packer.h, include/cpp_dslash_scalar.h,
	  include/cpp_dslash_scalar_32bit.h,
	  include/cpp_dslash_scalar_64bit.h,
	  include/cpp_dslash_scalar_types.h, include/dispatch_parscalar.h,
	  include/dispatch_scalar.h, include/dslash_config.h,
	  include/dslash_config_internal.h.in,
	  include/shift_table_3d_parscalar.h,
	  include/shift_table_3d_scalar.h, include/shift_table_parscalar.h,
	  include/shift_table_parscalar_types.h,
	  include/shift_table_scalar.h, include/sse_sign_32bit.h,
	  include/sse_sign_64bit.h, include/tables_parscalar.h,
	  lib/Makefile.am, lib/cpp_dslash_3d_scalar_32bit.cc,
	  lib/cpp_dslash_3d_scalar_64bit.cc,
	  lib/cpp_dslash_parscalar_32bit.cc,
	  lib/cpp_dslash_parscalar_3d_32bit.cc,
	  lib/cpp_dslash_parscalar_3d_64bit.cc,
	  lib/cpp_dslash_parscalar_64bit.cc,
	  lib/cpp_dslash_scalar_32bit.cc, lib/cpp_dslash_scalar_64bit.cc,
	  lib/dispatch_parscalar.cc, lib/dispatch_parscalar_openmp.cc,
	  lib/dispatch_parscalar_qmt.cc, lib/dispatch_scalar.cc,
	  lib/dispatch_scalar_openmp.cc, lib/dispatch_scalar_qmt.cc,
	  lib/qdp_packer_3d.cc, lib/qdp_packer_nopad.cc,
	  lib/shift_table_scalar.cc, tests/Makefile.am,
	  tests/dslash_3d_w.cc, tests/dslash_3d_w.h, tests/dslashm_w.cc,
	  tests/dslashm_w.h, tests/reunit.cc, tests/reunit.h,
	  tests/sse32.h, tests/sse64.h, tests/t_dslash.cc,
	  tests/t_dslash_3d.cc, tests/t_site_ops_parscalar.cc,
	  tests/t_site_ops_scalar.cc, tests/testDecomp.h,
	  tests/testDecomp32bit.cc, tests/testDecomp64bit.cc,
	  tests/testDecompHvv.h, tests/testDecompHvv32bit.cc,
	  tests/testDecompHvv64bit.cc, tests/testDslash3D.cc,
	  tests/testDslash3D.h, tests/testDslashFull.cc,
	  tests/testDslashFull.h, tests/testMvvRecons.h,
	  tests/testMvvRecons32bit.cc, tests/testMvvRecons64bit.cc,
	  tests/testRecons.h, tests/testRecons32bit.cc,
	  tests/testRecons64bit.cc, tests/testSiteDslash.h,
	  tests/testSiteDslash32bit.cc, tests/testSiteDslash64bit.cc,
	  tests/testvol.h, tests/timeDecomp.cc, tests/timeDecomp.h,
	  tests/timeDslash.cc, tests/timeDslash.h, tests/timeDslash3D.cc,
	  tests/timeDslash3D.h, tests/time_decomp.cc, tests/time_dslash.cc,
	  tests/time_dslash_3d.cc, tests/unittest.h: Initial revision

2008-08-21 17:11  edwards

	* lib/meas/inline/io/: inline_gaussian_obj.cc,
	  qio_read_obj_funcmap.cc, qio_write_obj_funcmap.cc: Added new
	  gaussian into of a MapObject for the keypropcolorvec.

2008-08-21 17:10  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.metric.xml, colorvec_matelem.out.xml: Added new
	  tasks.

2008-08-21 13:45  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed
	  storage order for props. Now, write/read an entire NxN matrix for
	  each spins source and sink component.

2008-08-19 00:59  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Changed
	  to using a fixed record DB.

2008-08-18 15:45  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: cleaned up
	  the added sft options

2008-08-18 14:23  jbulava

	* lib/: meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  meas/inline/hadron/inline_stoch_group_baryon_w.h,
	  util/ft/sftmom.cc, util/ft/sftmom.h: Added an additional
	  constructor to sftmom class that allows a list of momenta to be
	  calculated rather than all momenta less that a max value.

2008-08-18 14:10  edwards

	* lib/meas/inline/io/qio_read_obj_funcmap.cc: Added a check if
	  buffer_id exists for ReadMapObject. The map allows me to keep
	  reading into an existing map.

2008-08-18 10:53  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Fixed path.

2008-08-17 11:13  edwards

	* tests/chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml:
	  Changed metric to new task order.

2008-08-16 01:08  edwards

	* lib/util/ferm/map_obj.h: Added iterators (begin and end), and add
	  size() function.

2008-08-16 01:07  edwards

	* lib/meas/inline/hadron/inline_prop_colorvec_w.cc: Added XML file
	  and record xml for output propagator.

2008-08-16 01:06  edwards

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: Added functions to support writing and
	  reading MapObject<KeyPropColorVec_t,LatticeFermion> .

2008-08-16 01:05  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Added new IO tasks.

2008-08-14 11:08  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Added
	  proper check of momentum and displacements for the type_of_data
	  flag.

2008-08-13 23:17  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Turned
	  back on the optimizations for sparsity of the contractions.

2008-08-12 15:52  bjoo

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: Untemplated the reader/writer for
	  EigenInfo to cure SDSC Build problem. I dont think there was
	  actually any problem with the code so I resent the duplication,
	  but the compiler on BGL bombed and I guess that is the decider.
	  Also removed a duplicate registration from the writer funcmap

2008-08-11 23:42  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Turned
	  off optimizations for the moment.

2008-08-11 06:45  mcneile

	* lib/actions/ferm/qprop/eoprec_staggered_qprop.h: I am fixing a
	  bug where the minimum number of iterations is not passed to the
	  inverter.

2008-08-06 13:58  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: Updated regression tests.

2008-08-06 13:58  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_baryon_matelem_colorvec_w.h,
	  inline_meson_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.h: Added optimizations to output
	  values.

2008-08-06 11:27  edwards

	* tests/chroma/hadron/colorvec_matelem/:
	  colorvec_matelem.metric.xml, regres.pl: Fixed.

2008-08-06 11:24  edwards

	* tests/chroma/hadron/colorvec_matelem/regres.pl: Regression test.

2008-08-06 11:20  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.h: Switched to using  BinaryVarDB
	  (Berkeley DB) as the new storage method.

2008-08-06 11:19  edwards

	* lib/: Makefile.am, meas/smear/disp_colvec_map.cc,
	  meas/smear/disp_colvec_map.h: Added disp_colvec_map - holds
	  displaced colorvectors out of an array.

2008-08-06 11:18  edwards

	* tests/: regres.pl,
	  chroma/hadron/colorvec_matelem/colorvec_matelem.ini.xml,
	  chroma/hadron/colorvec_matelem/colorvec_matelem.metric.xml,
	  chroma/hadron/colorvec_matelem/colorvec_matelem.out.xml: Hooked
	  in new regressions.

2008-08-05 00:17  edwards

	* lib/Makefile.am: Added key_val_db.h

2008-08-05 00:15  edwards

	* lib/util/ferm/key_val_db.h: Provides a Serializable harness for
	  chroma objects.

2008-08-02 23:26  edwards

	* lib/chroma_config_internal.h.in, configure: Induced changes.

2008-08-02 23:25  edwards

	* aclocal.m4: Induced changes

2008-08-02 23:25  edwards

	* mainprogs/tests/t_db.cc: Moved to qdp++.

2008-08-02 23:25  edwards

	* configure.ac, lib/Makefile.am, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am, other_libs/Makefile.am: Removed from
	  chroma the configuring of  ffdb-lite - moved it to QDP++.  Now,
	  pick up from qdp-config a new  --db-enabled  flag (that is
	  yes/no), and if yes then turn on an automake flag.

2008-08-02 23:14  tag chroma3-30-2

2008-08-02 23:14  edwards

	* NEWS: Fixed info on 3.30.2

2008-08-02 23:08  edwards

	* NEWS: Info on 3.30.1

2008-07-31 22:43  bjoo

	* other_libs/sse_wilson_dslash/lib/:
	  sse_su3dslash_32bit_parscalar.c, sse_su3dslash_64bit_parscalar.c:
	  Ooops. timeDecomp should see the chis now

2008-07-30 16:25  bjoo

	* other_libs/sse_wilson_dslash/: aclocal.m4, configure,
	  configure.ac, include/shift_tables_parscalar.h,
	  include/sse_config_internal.h.in, lib/shift_tables_parscalar.c,
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c, tests/Makefile.am,
	  tests/timeDslash.cc: OK, I rearranged the comms in the non 3d
	  guys. The offset table is now an actual pointer table into the
	  chis and the send and receive buffers directly. The comms bufs no
	  longer live in the chi1 and chi2 arrays. The chi1 and chi2 arrays
	  are consequentially now one 3rd their previous size and so cache
	  locality ought to be better. I did this mainly so that I can play
	  games with the alignment/placement of the comms buffers. This may
	  or may not be helpful on the Cray machines or so. I also put in
	  autoconf hooks to enable and disable the compute or comms parts
	  for diagnostics. These are off by default. The code appears to
	  work correctly

2008-07-30 15:27  tag chroma3-30-1

2008-07-30 15:27  edwards

	* mainprogs/tests/t_db.cc: Working.

2008-07-23 22:53  edwards

	* configure: Induced changes.

2008-07-23 22:51  edwards

	* aclocal.m4: Induced changes

2008-07-23 22:51  edwards

	* mainprogs/tests/t_db.cc: Start of Berkeley DB tester.

2008-07-23 22:51  edwards

	* mainprogs/tests/Makefile.am: Added DB flags. Added t_db.cc

2008-07-23 22:49  edwards

	* configure.ac: Added a --enable-db to force the correct paths to
	  Berkeley DB if needed. Fixed up the handling of  db-lite.

2008-07-22 13:50  edwards

	* lib/Makefile.am: Turned on BUILD_FFDB_LITE.

2008-07-22 13:41  bjoo

	* lib/update/molecdyn/monomial/:
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_ratio_rat_conv_monomial_w.cc,
	  unprec_one_flavor_ratio_rat_rat_monomial_w.cc: Removed downcasts
	  in unprec rat monomials to allow use of temp_prec type stuff

2008-07-22 12:03  edwards

	* aclocal.m4, lib/chroma_config_internal.h.in, configure: Induced
	  changes

2008-07-22 12:03  edwards

	* configure.ac: Changed to 3.31.0

2008-07-22 11:53  edwards

	* aclocal.m4: Induced changes

2008-07-22 11:52  edwards

	* mainprogs/tests/Makefile.am: Added optional build for ffdb-lite.

2008-07-22 11:50  edwards

	* mainprogs/main/Makefile.am, other_libs/Makefile.am: Added
	  optional builds for ffdb-lite.

2008-07-22 11:49  edwards

	* configure.ac: Added enable for  ffdb-lite.

2008-07-21 14:44  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/hadron/hadron_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc: Will's static
	  light code

2008-07-21 14:15  tag chroma3-30-0

2008-07-21 14:15  kostas

	* lib/meas/inline/hadron/: inline_heavyhadspec_w.cc,
	  inline_heavyhadspec_w.h, inline_static_light_spec_w.cc,
	  inline_static_light_spec_w.h, inline_stoch_hadron_w.cc: added
	  Will's static light potentials

2008-07-21 13:59  kostas

	* lib/meas/hadron/: heavy_hadron_potentials_w.cc,
	  heavy_hadron_potentials_w.h, heavy_hadrons_su3_w.cc,
	  heavy_hadrons_su3_w.h: Will's static light potentials and
	  spectrum

2008-07-20 22:33  edwards

	* lib/util/ferm/: staggered_operators_s.cc,
	  staggered_operators_s.h, tdiractodr.cc, tdiractodr.h: Some small
	  code cleanups - no functional change.

2008-07-20 22:32  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: New regression input and output.

2008-07-20 22:32  edwards

	* lib/: Makefile.am, util/ferm/key_prop_colorvec.cc,
	  util/ferm/key_prop_colorvec.h, util/ferm/map_obj.h: Added
	  key_prop_colorvec and map_obj. The latter is a wrapper over
	  std::map, and the former uses them.

2008-07-20 22:30  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_prop_colorvec_w.cc, inline_prop_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.h: Split apart the
	  prop_matelem_colorvec code into a separate code that computes
	  just the solution vectors, and the old prop_matelem_colorvec just
	  does the contractions.

2008-07-20 22:16  edwards

	* lib/meas/inline/hadron/: inline_prop_colorvec_w.cc,
	  inline_prop_colorvec_w.h: Calculates just the propagator on a
	  colorvector - no final contraction.

2008-07-02 17:22  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Small
	  cleanup on initialization of displacements.

2008-07-02 17:21  edwards

	* lib/meas/inline/hadron/: inline_baryon_matelem_colorvec_w.cc,
	  inline_baryon_matelem_colorvec_w.h, inline_hadron_aggregate.cc:
	  Added inline_baryon_matelem_colorvec_w

2008-07-02 17:21  edwards

	* lib/Makefile.am: Added inline_baryon_matelem_colorvec.{h,cc}

2008-06-30 11:09  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc:
	  Changed some print statements. Commented out more timing for
	  maps.

2008-06-30 10:14  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc:
	  Removed timing printout from map call - too much stuff.

2008-06-29 23:58  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc:
	  Commented out xml debugging of meson object.

2008-06-29 23:57  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc:
	  Commented out XML debugging or prop objects.

2008-06-29 17:26  edwards

	* lib/meas/inline/io/inline_eigen_bin_colvec_read_obj.cc: Fixed
	  writing of record_xml.

2008-06-29 16:33  edwards

	* lib/meas/eig/: gramschm.cc, gramschm.h: Added suppose for
	  LatticeColorVector.

2008-06-29 16:23  edwards

	* tests/chroma/hadron/colorvec_matelem/: colorvec_matelem.ini.xml,
	  colorvec_matelem.out.xml: New regression for colorvector matrix
	  elements.

2008-06-29 16:17  edwards

	* lib/meas/inline/io/: inline_eigen_bin_colvec_read_obj.cc,
	  inline_eigen_bin_colvec_read_obj.h: Changed to read an array of
	  filenames.

2008-06-29 16:17  edwards

	* lib/meas/inline/io/inline_gaussian_obj.cc: Added
	  orthogonalization of evs in init for EigenInfo.

2008-06-29 16:16  edwards

	* lib/meas/inline/io/inline_io_aggregate.cc: Added
	  InlineEigenBinColVecReadNamedObjEnv

2008-06-28 23:06  edwards

	* lib/meas/inline/hadron/: inline_prop_matelem_colorvec_w.cc,
	  inline_prop_matelem_colorvec_w.h: Now write propagator matrix
	  elements to a lime file.

2008-06-28 23:06  edwards

	* lib/meas/inline/hadron/: inline_meson_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.h: Got rid of a separate
	  displacement file. Now take it from the input xml.

2008-06-27 16:30  bjoo

	* tests/regres.pl: Oops. Wasn't supposed to check in this

2008-06-27 16:24  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/linop/clover_term_w.h,
	  mainprogs/tests/t_clover.cc, tests/regres.pl: Added SSED CLover

2008-06-27 16:22  bjoo

	* lib/actions/ferm/linop/: clover_apply_ssed.cc,
	  clover_term_ssed.cc, clover_term_ssed.h: Added SSE Double Prec
	  Kernels for applying clover

2008-06-27 11:19  edwards

	* configure: Induced changes

2008-06-27 11:16  edwards

	* aclocal.m4: Induced changes

2008-06-27 11:08  edwards

	* lib/Makefile.am: Commented out FFDB lite.

2008-06-27 05:48  mcneile

	* tests/spectrum_s/: spectrum_s.ini.xml, spectrum_s.out.xml,
	  spectrum_s_HISQ.ini.xml, spectrum_s_HISQ.out.xml: Added new
	  parameters. THis should fix the regression failures (possibly).

2008-06-27 05:34  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h, util_compute_quark_prop_s.cc,
	  util_compute_quark_prop_s.h: I have added code for the noisy wall
	  source.

2008-06-27 02:15  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Made a
	  write group for the prop mat elem.

2008-06-27 02:14  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Added
	  total number of elements to binary payload.

2008-06-26 11:23  mcneile

	* tests/spectrum_s/: spectrum_s.ini.xml, spectrum_s_HISQ.ini.xml:
	  Added new arguments.

2008-06-26 11:20  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h, util_compute_quark_prop_s.cc: I have added
	  calls for Wilson loops adn charm mesons.

2008-06-26 11:12  mcneile

	* lib/Makefile.am: I have added routine for second local pion.

2008-06-26 11:10  mcneile

	* lib/meas/hadron/: g4g5_x_g4g5_local.cc, g4g5_x_g4g5_local.h: A
	  routine to compute the g4g5 cross g4g5 local pion.

2008-06-26 11:08  mcneile

	* lib/meas/hadron/: vector_meson_s.cc, vector_meson_s.h: I have
	  fixed a bug in this routine.

2008-06-26 11:04  mcneile

	* lib/meas/hadron/: pion_local_s.cc, pion_local_s.h: I have added
	  momentum to this routine.

2008-06-26 11:02  mcneile

	* lib/Makefile.am: Added Wilson loop code.

2008-06-26 10:59  mcneile

	* lib/meas/glue/glue.h: Load in the new Wilson loop routines.

2008-06-26 10:58  mcneile

	* lib/meas/glue/: wloop.cc, wloop.h: Some Wilson loop routines.
	  These are used to compute alpha_s the HPQCD way. Perhaps these
	  are already computed elsewhere, but I couldn't undertsnad the
	  existing code and was nervous about calls to axial guage fixing
	  routines.

2008-06-24 16:57  edwards

	* lib/util/gauge/sunfill.cc: Removed templates since no longer
	  needed.

2008-06-21 01:14  edwards

	* lib/meas/inline/hadron/inline_meson_matelem_colorvec_w.cc: Needed
	  to initialize the objects in the displacement map.

2008-06-21 00:26  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added
	  inline_meson_matelem_colorvec.

2008-06-21 00:20  edwards

	* lib/Makefile.am: Added inline_meson_matelem_colorvec_w.

2008-06-21 00:19  edwards

	* lib/meas/inline/hadron/: inline_meson_matelem_colorvec_w.cc,
	  inline_meson_matelem_colorvec_w.h: First version. Compute meson
	  operators via colorvector matrix elements.

2008-06-21 00:19  edwards

	* lib/meas/inline/hadron/: inline_prop_matelem_colorvec_w.h,
	  inline_prop_matelem_colorvec_w.cc: Added array of t_sources.

2008-06-20 20:43  bjoo

	* lib/actions/ferm/invert/minvcg2.cc: Moved things around to
	  potentially improve cache reuse

2008-06-20 11:17  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Fixed
	  source indices in contractOp.

2008-06-18 17:38  edwards

	* lib/meas/inline/io/: inline_eigen_bin_colvec_read_obj.cc,
	  inline_eigen_bin_colvec_read_obj.h, inline_nersc_read_obj.h:
	  Reads a binary dump of an LatticeColorVector and eigenvalues.

2008-06-18 17:37  edwards

	* lib/Makefile.am: Added inline_eigen_bin_colvec_read_obj.{h,cc}

2008-06-18 11:06  edwards

	* tests/spectrum_s/: spectrum_s.out.xml, spectrum_s_HISQ.out.xml:
	  Updated for new tags in ProgramInfo.

2008-06-18 11:03  edwards

	* tests/hmc/: hmc.prec_wilson.log.xml, hmc.prec_wilson.out.xml,
	  hmc.prec_wilson_repro.log.xml, hmc.prec_wilson_repro.out.xml:
	  Updated for new tags in ProgramInfo.

2008-06-18 11:00  edwards

	* tests/chroma/hadron/propagator/: unprec-zolo-ev-multi.ini.xml,
	  unprec-zolo-ev-multi.out.xml: Updated regression for new
	  EigenInfo tags.

2008-06-17 17:05  edwards

	* tests/chroma/eig/: ritz_Hw-v1.ini.xml, ritz_Hw-v1.out.xml:
	  Updated to use new tags.

2008-06-17 16:54  edwards

	* lib/meas/inline/hadron/inline_prop_matelem_colorvec_w.cc: Fixed
	  location of closing namespace.

2008-06-17 16:50  edwards

	* lib/actions/ferm/fermstates/eigen_state.h: Now uses EigenInfo as
	  a template.

2008-06-17 16:41  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added
	  PropMatElemColorVec

2008-06-17 13:46  edwards

	* lib/: meas/inline/hadron/inline_prop_matelem_colorvec_w.cc,
	  meas/inline/hadron/inline_prop_matelem_colorvec_w.h, Makefile.am:
	  Added new colorvector matrix element of a propagator.

2008-06-17 12:10  edwards

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: Now use templates directly in callbacks
	  for EigenInfo.

2008-06-17 12:10  edwards

	* lib/meas/inline/io/inline_gaussian_obj.cc: New eigeninfo
	  generator.

2008-06-17 12:09  edwards

	* tests/chroma/io/qio_write_obj/: qio_write_obj.ini.xml,
	  qio_write_obj.out.xml: Updated to use new eigeninfo stuff.

2008-06-17 11:36  edwards

	* lib/: meas/inline/eig/inline_ritz_H_w.cc,
	  meas/inline/io/qio_read_obj_funcmap.cc,
	  meas/inline/io/qio_write_obj_funcmap.cc, util/ferm/eigeninfo.h:
	  Changed EigenInfo to be a template instead of hard-wiring
	  LatticeFermion.  The eigenvalues are always RealD, though.

2008-06-06 13:24  bjoo

	* tests/t_remez.ini.xml: Added an own directory for t_remez, so I
	  can remove this

2008-06-06 13:23  bjoo

	* tests/t_remez/: remez_light_action.ini.xml,
	  remez_light_force.ini.xml, remez_strange_action.ini.xml,
	  remez_strange_force.ini.xml: Sample inputs for t_remez

2008-06-06 13:15  bjoo

	* mainprogs/tests/t_remez.cc: Made t_remez input more like the
	  monomial input. Made output directly usable in monomials (modulo
	  removal of root tag)

2008-06-05 15:58  edwards

	* tests/chroma/: gfix/coulgauge/coulgauge.out.xml,
	  glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml,
	  glue/qtop_naive/qtop_naive.out.xml, glue/wilslp/wilslp.out.xml,
	  hadron_s/make_source/make_source_s.out.xml,
	  hadron_s/propagator/asqtad.out.xml,
	  hadron_s/propagator/klein_gordon.out.xml,
	  hadron_s/sink_smear/sink_smearing_s.out.xml,
	  io/nersc_read_obj/nersc_read_obj.out.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_read_obj/szin_read_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.out.xml,
	  io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.out.xml,
	  schrfun/schrfun-hadspec.out.xml, schrfun/schrfun-pcac.out.xml,
	  smear/link_smear/link_smear.out.xml: Updated regressions yet
	  again.

2008-06-04 23:33  edwards

	* tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml,
	  gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml,
	  glue/gaugestate/gaugestate.out.xml,
	  glue/qtop_naive/qtop_naive.out.xml, glue/wilslp/wilslp.out.xml,
	  hadron/bar3ptfn/bar3ptfn.out.xml,
	  hadron/building_blocks/bb-baryon.out.xml,
	  hadron/building_blocks/bb-deriv.out.xml,
	  hadron/building_blocks/bb-meson.out.xml,
	  hadron/fermstate/fermstate.out.xml,
	  hadron/gauge_transf/gauge_transf.out.xml,
	  hadron/hadron_contract/meson_2pt/meson_2pt.out.xml,
	  hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml,
	  hadron/hadspec/hadspec.out.xml,
	  hadron/make_source/dilute.out.xml,
	  hadron/make_source/make_source.out.xml,
	  hadron/make_source/source-deriv.out.xml,
	  hadron/make_source/source-displace.out.xml,
	  hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml,
	  hadron/noisy_building_blocks/nbb.out.xml,
	  hadron/propagator/eo3dprec_s_cprec_t_clover.out.xml,
	  hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover.bicgstab.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover_schr1link.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover_schr2link.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover_schr2link_space.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_wilson.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_wilson_schr1link.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_wilson_schr2link.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_wilson_schr2link_space.out.xml,
	  hadron/propagator/prec_clover-stout3d.bicgstab.out.xml,
	  hadron/propagator/prec_clover-stout3d.mr.out.xml,
	  hadron/propagator/prec_clover-stout3d.out.xml,
	  hadron/propagator/prec_clover.eigcg.out.xml,
	  hadron/propagator/prec_clover.out.xml,
	  hadron/propagator/prec_dwf.eigcg.out.xml,
	  hadron/propagator/prec_dwf.out.xml,
	  hadron/propagator/prec_ht_contfrac5d.out.xml,
	  hadron/propagator/prec_ovext.out.xml,
	  hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  hadron/propagator/prec_parwilson.out.xml,
	  hadron/propagator/prec_wilson-smearing.out.xml,
	  hadron/propagator/prec_wilson-twisted.out.xml,
	  hadron/propagator/prec_wilson.2+2.out.xml,
	  hadron/propagator/prec_wilson.ferm.out.xml,
	  hadron/propagator/prec_wilson.out.xml,
	  hadron/propagator/prec_zolo_nef.out.xml,
	  hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  hadron/propagator/unprec_clover.out.xml,
	  hadron/propagator/unprec_dwftransf.out.xml,
	  hadron/propagator/unprec_graphene.out.xml,
	  hadron/propagator/unprec_hamberwu.out.xml,
	  hadron/propagator/unprec_ovext.out.xml,
	  hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  hadron/propagator/unprec_s_cprec_t_wilson.out.xml,
	  hadron/propagator/unprec_s_cprec_t_wilson_schr1link.out.xml,
	  hadron/propagator/unprec_s_cprec_t_wilson_schr2link.out.xml,
	  hadron/propagator/unprec_s_cprec_t_wilson_schr2link_space.out.xml,
	  hadron/propagator/unprec_wilson.out.xml,
	  hadron/propagator/unprec_zolo_nef.out.xml,
	  hadron/qqq/qqdiquark.out.xml, hadron/qqq/qqq.out.xml,
	  hadron/qqqNucNuc/qqqNucNuc.out.xml,
	  hadron/seqsource/seqsource-baryon.out.xml,
	  hadron/seqsource/seqsource-derivmeson.out.xml,
	  hadron/seqsource/seqsource-meson.out.xml,
	  hadron/seqsource/seqsource-photon.out.xml,
	  hadron/sink_smear/sink-deriv.out.xml,
	  hadron/sink_smear/sink-displace.out.xml,
	  hadron/sink_smear/sink_smearing.out.xml,
	  hadron/static_light/static_light.dat.xml,
	  hadron/static_light/static_light.out.xml,
	  hadron/static_light/static_light_pot.dat.xml,
	  hadron/static_light/static_light_pot.out.xml,
	  hadron/stoch_baryon/stoch_baryon.out.xml,
	  hadron/stoch_meson/stoch_meson.out.xml: Updated regressions yet
	  again for new tags in PrintGeom group.

2008-06-04 23:08  edwards

	*
	  tests/chroma/hadron/stoch_group_baryon/stoch_group_baryon.out.xml:
	  Updated.

2008-06-04 22:47  edwards

	* tests/chroma/hadron/noisy_building_blocks/: nbb.dat_0.xml,
	  nbb.dat_1.xml: Don't need these.

2008-06-04 22:46  edwards

	* tests/chroma/hadron/noisy_building_blocks/: nbb.dat_0.xml,
	  nbb.dat_1.xml, nbb.ini.xml, nbb.out.xml: Updated regressions.

2008-06-04 22:23  edwards

	* tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml,
	  gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml,
	  glue/gaugestate/gaugestate.out.xml,
	  glue/qtop_naive/qtop_naive.out.xml, glue/wilslp/wilslp.out.xml,
	  hadron/bar3ptfn/bar3ptfn.out.xml,
	  hadron/building_blocks/bb-baryon.out.xml,
	  hadron/building_blocks/bb-deriv.out.xml,
	  hadron/building_blocks/bb-meson.out.xml,
	  hadron/fermstate/fermstate.out.xml,
	  hadron/hadron_contract/meson_2pt/meson_2pt.out.xml,
	  hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml,
	  hadron/hadspec/hadspec.out.xml,
	  hadron/make_source/dilute.out.xml,
	  hadron/make_source/make_source.out.xml,
	  hadron/make_source/source-deriv.out.xml,
	  hadron/make_source/source-displace.out.xml,
	  hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml,
	  hadron/noisy_building_blocks/nbb.out.xml: Updated regressions for
	  new PrintInfo group.

2008-06-04 16:30  edwards

	* tests/: chroma/eig/eigbnds.out.xml,
	  chroma/eig/ritz_Hw-v1.out.xml,
	  chroma/gfix/coulgauge/coulgauge.out.xml,
	  chroma/glue/fuzwilp/fuzwilp.out.xml,
	  chroma/glue/gaugestate/gaugestate.out.xml,
	  chroma/glue/qtop_naive/qtop_naive.out.xml,
	  chroma/glue/wilslp/wilslp.out.xml,
	  chroma/hadron/bar3ptfn/bar3ptfn.out.xml,
	  chroma/hadron/building_blocks/bb-baryon.out.xml,
	  chroma/hadron/building_blocks/bb-deriv.out.xml,
	  chroma/hadron/building_blocks/bb-meson.out.xml,
	  chroma/hadron/fermstate/fermstate.out.xml,
	  chroma/hadron/hadron_contract/meson_2pt/meson_2pt.out.xml,
	  chroma/hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml,
	  chroma/hadron/hadspec/hadspec.out.xml,
	  chroma/hadron/make_source/dilute.out.xml,
	  chroma/hadron/make_source/make_source.out.xml,
	  chroma/hadron/make_source/source-deriv.out.xml,
	  chroma/hadron/make_source/source-displace.out.xml,
	  chroma/hadron/mesonspec/mesonspec.out.xml,
	  chroma/hadron/mres/mres.out.xml,
	  chroma/hadron/noisy_building_blocks/nbb.out.xml,
	  chroma/hadron/propagator/eo3dprec_s_cprec_t_clover.out.xml,
	  chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_clover.bicgstab.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_clover.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_clover_schr1link.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_clover_schr2link.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_clover_schr2link_space.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_wilson.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_wilson_schr1link.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_wilson_schr2link.out.xml,
	  chroma/hadron/propagator/iluprec_s_cprec_t_wilson_schr2link_space.out.xml,
	  chroma/hadron/propagator/prec_clover-stout3d.bicgstab.out.xml,
	  chroma/hadron/propagator/prec_clover-stout3d.mr.out.xml,
	  chroma/hadron/propagator/prec_clover-stout3d.out.xml,
	  chroma/hadron/propagator/prec_clover.eigcg.out.xml,
	  chroma/hadron/propagator/prec_clover.out.xml,
	  chroma/hadron/propagator/prec_dwf.eigcg.out.xml,
	  chroma/hadron/propagator/prec_dwf.out.xml,
	  chroma/hadron/propagator/prec_ht_contfrac5d.out.xml,
	  chroma/hadron/propagator/prec_ovext.out.xml,
	  chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  chroma/hadron/propagator/prec_parwilson.out.xml,
	  chroma/hadron/propagator/prec_wilson-smearing.out.xml,
	  chroma/hadron/propagator/prec_wilson-twisted.out.xml,
	  chroma/hadron/propagator/prec_wilson.2+2.out.xml,
	  chroma/hadron/propagator/prec_wilson.ferm.out.xml,
	  chroma/hadron/propagator/prec_wilson.out.xml,
	  chroma/hadron/propagator/prec_zolo_nef.out.xml,
	  chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  chroma/hadron/propagator/unprec_clover.out.xml,
	  chroma/hadron/propagator/unprec_dwftransf.out.xml,
	  chroma/hadron/propagator/unprec_graphene.out.xml,
	  chroma/hadron/propagator/unprec_hamberwu.out.xml,
	  chroma/hadron/propagator/unprec_ovext.out.xml,
	  chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  chroma/hadron/propagator/unprec_s_cprec_t_wilson.out.xml,
	  chroma/hadron/propagator/unprec_s_cprec_t_wilson_schr1link.out.xml,
	  chroma/hadron/propagator/unprec_s_cprec_t_wilson_schr2link.out.xml,
	  chroma/hadron/propagator/unprec_s_cprec_t_wilson_schr2link_space.out.xml,
	  chroma/hadron/propagator/unprec_wilson.out.xml,
	  chroma/hadron/propagator/unprec_zolo_nef.out.xml,
	  chroma/hadron/qqq/qqdiquark.out.xml,
	  chroma/hadron/qqq/qqq.out.xml,
	  chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml,
	  chroma/hadron/seqsource/seqsource-baryon.out.xml,
	  chroma/hadron/seqsource/seqsource-derivmeson.out.xml,
	  chroma/hadron/seqsource/seqsource-meson.out.xml,
	  chroma/hadron/seqsource/seqsource-photon.out.xml,
	  chroma/hadron/sink_smear/sink-deriv.out.xml,
	  chroma/hadron/sink_smear/sink-displace.out.xml,
	  chroma/hadron/sink_smear/sink_smearing.out.xml,
	  chroma/hadron/static_light/static_light.out.xml,
	  chroma/hadron/static_light/static_light_pot.out.xml,
	  chroma/hadron/stoch_baryon/stoch_baryon.out.xml,
	  chroma/hadron/stoch_group_baryon/stoch_group_baryon.out.xml,
	  hmc/hmc.prec_wilson.out.xml, hmc/hmc.prec_wilson_repro.out.xml,
	  purgaug/purgaug.2+2.1loop.out.xml, purgaug/purgaug.2+2.out.xml,
	  purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.out.xml,
	  spectrum_s/spectrum_s.out.xml: Updated regressions to have the
	  new PrintInfo group.

2008-06-04 10:44  kostas

	* lib/meas/sources/rndz2wall_source_const.cc: fixed handling of
	  random seed to have the same behavior as dilutedZN source

2008-06-03 23:24  edwards

	* tests/chroma/hadron/stoch_group_meson/: stoch_group_meson.ini.pl,
	  stoch_group_meson.ini.xml, stoch_group_meson.out.xml: Changed
	  input arguments for annihilation operator.

2008-06-03 23:19  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.h: Added
	  creation and annihilation operator contraction controls.

2008-06-03 23:17  edwards

	* lib/Makefile.am: Added enum_mesonop_io.{h,cc}.

2008-06-03 23:16  edwards

	* lib/io/enum_io/: enum_mesonop_io.cc, enum_mesonop_io.h: Enums for
	  type of contraction for meson stochastic operators.

2008-06-03 23:16  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Added
	  creation and annihilation operator contraction controls.

2008-06-03 23:15  edwards

	* tests/chroma/hadron/stoch_group_meson/: stoch_group_meson.ini.pl,
	  stoch_group_meson.ini.xml, stoch_group_meson.out.xml: New
	  creation and annihilation op enums.

2008-06-02 12:33  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_1flav_wilson-readcoeffs.ini.xml,
	  t_leapfrog.prec_1flav_wilson-readcoeffs.log.xml: Added regression
	  for reading coefficient from the file

2008-06-02 12:18  bjoo

	* mainprogs/tests/t_remez.cc: t_remez.cc now handles -ve powers in
	  numerator and denominator too

2008-06-02 12:18  bjoo

	* lib/update/molecdyn/monomial/read_rat_approx.cc:
	  read_rat_approx.cc

2008-06-02 12:17  bjoo

	* tests/t_remez.ini.xml: Temporary add of input file for new
	  t_remez. Will make proper regressions at some point

2008-06-02 11:44  bjoo

	* mainprogs/tests/t_remez.cc: t_remez changed to compute arbitrary
	  Remez coeffs

2008-06-02 11:44  bjoo

	* lib/Makefile.am: Makefile.am updated

2008-06-02 11:42  bjoo

	* lib/update/molecdyn/monomial/: rat_approx_aggregate.cc,
	  read_rat_approx.cc, read_rat_approx.h: Added readers for rat
	  approx

2008-05-30 14:53  edwards

	* lib/util/info/proginfo.cc: Added basePrecision to output.

2008-05-30 14:50  edwards

	* configure: Induced changes

2008-05-30 14:47  edwards

	* aclocal.m4: Induced changes

2008-05-30 14:45  edwards

	*
	  lib/update/molecdyn/monomial/two_flavor_ratio_conv_conv_monomial_w.h:
	  Removed getX.

2008-05-30 14:44  edwards

	* aclocal.m4: Induced changes

2008-05-30 14:42  edwards

	* NEWS: Info on 3.30.0

2008-05-30 14:40  edwards

	* configure.ac: Changed to 3.30.0

2008-05-28 23:58  edwards

	* lib/update/molecdyn/monomial/:
	  eoprec_constdet_two_flavor_monomial_w.h, two_flavor_monomial_w.h:
	  Got rid of getX. This saves a "state" construction.

2008-05-28 23:29  edwards

	* lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h: Fixed
	  missing contruction of getPhi() fields. Now appears to work.
	  Removed getX.

2008-05-28 23:28  edwards

	* lib/actions/ferm/invert/invcg2_array.cc: Added property size
	  check on linop and rhs.

2008-05-28 23:28  edwards

	* lib/update/molecdyn/predictor/zero_guess_predictor.h: Added error
	  check.

2008-05-28 23:27  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_contfrac.ini.xml,
	  t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.ini.xml,
	  t_leapfrog.prec_dwf.log.xml, t_leapfrog.unprec_dwf.ini.xml,
	  t_leapfrog.unprec_dwf.log.xml: Updated regression output for the
	  case where the 2 flavor 5D monomial no longer has a Pauli-Villars
	  term implicitly subtracted out.

2008-05-27 13:40  edwards

	* tests/t_leapfrog/:
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.ini.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.log.xml: Updated to use new
	  structure of monomials.

2008-05-24 01:14  edwards

	* tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.ini.xml: Fixed tag.

2008-05-24 01:10  edwards

	* tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.ini.xml: Updated to
	  new monomial structure.

2008-05-24 00:58  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_wilson.ini.xml: New input tags.

2008-05-24 00:41  edwards

	* tests/t_leapfrog/t_leapfrog.prec_hasenbusch5d_dwf.ini.xml:
	  Switched form of input.

2008-05-24 00:29  edwards

	* lib/update/molecdyn/monomial/:
	  one_flavor_rat_monomial_params_w.cc,
	  one_flavor_ratio_rat_conv_monomial_params_w.cc,
	  one_flavor_ratio_rat_rat_monomial_params_w.cc,
	  two_flavor_ratio_conv_conv_monomial_params_w.cc,
	  two_flavor_ratio_conv_rat_monomial_params_w.cc: Changed Numerator
	  and Denominator to Action and PrecAction as per picky requests.

2008-05-23 17:34  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_dwf.log.xml,
	  t_leapfrog.prec_1flav_wilson.ini.xml,
	  t_leapfrog.prec_1flav_wilson.log.xml: New monomial input
	  structure.

2008-05-23 17:32  edwards

	* lib/Makefile.am: Added new monomials.

2008-05-23 17:31  edwards

	* lib/update/molecdyn/monomial/: comp_approx.cc, comp_approx.h,
	  eoprec_constdet_one_flavor_rat_monomial5d_w.cc,
	  eoprec_constdet_one_flavor_rat_monomial5d_w.h,
	  eoprec_constdet_one_flavor_rat_monomial_w.cc,
	  eoprec_constdet_one_flavor_rat_monomial_w.h,
	  eoprec_constdet_one_flavor_ratio_rat_conv_monomial5d_w.cc,
	  eoprec_constdet_one_flavor_ratio_rat_conv_monomial5d_w.h,
	  eoprec_constdet_one_flavor_ratio_rat_conv_monomial_w.cc,
	  eoprec_constdet_one_flavor_ratio_rat_conv_monomial_w.h,
	  eoprec_constdet_one_flavor_ratio_rat_rat_monomial5d_w.cc,
	  eoprec_constdet_one_flavor_ratio_rat_rat_monomial5d_w.h,
	  eoprec_constdet_one_flavor_ratio_rat_rat_monomial_w.cc,
	  eoprec_constdet_one_flavor_ratio_rat_rat_monomial_w.h,
	  eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  eoprec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  eoprec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  eoprec_constdet_two_flavor_monomial5d_w.h,
	  eoprec_constdet_two_flavor_monomial_w.cc,
	  eoprec_constdet_two_flavor_monomial_w.h,
	  eoprec_constdet_two_flavor_polynomial_monomial_w.cc,
	  eoprec_constdet_two_flavor_polynomial_monomial_w.h,
	  eoprec_constdet_two_flavor_polyprec_monomial_w.cc,
	  eoprec_constdet_two_flavor_polyprec_monomial_w.h,
	  eoprec_constdet_two_flavor_ratio_conv_conv_monomial5d_w.cc,
	  eoprec_constdet_two_flavor_ratio_conv_conv_monomial5d_w.h,
	  eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.cc,
	  eoprec_constdet_two_flavor_ratio_conv_conv_monomial_w.h,
	  eoprec_constdet_two_flavor_ratio_conv_rat_monomial5d_w.cc,
	  eoprec_constdet_two_flavor_ratio_conv_rat_monomial5d_w.h,
	  eoprec_constdet_two_flavor_ratio_conv_rat_monomial_w.cc,
	  eoprec_constdet_two_flavor_ratio_conv_rat_monomial_w.h,
	  genapprox.cc, genapprox.h, monomial_aggregate_w.cc, monomial_w.h,
	  one_flavor_rat_monomial5d_params_w.cc,
	  one_flavor_rat_monomial5d_params_w.h,
	  one_flavor_rat_monomial5d_w.h,
	  one_flavor_rat_monomial_params_w.cc,
	  one_flavor_rat_monomial_params_w.h, one_flavor_rat_monomial_w.h,
	  one_flavor_ratio_rat_conv_monomial5d_w.h,
	  one_flavor_ratio_rat_conv_monomial_params_w.cc,
	  one_flavor_ratio_rat_conv_monomial_params_w.h,
	  one_flavor_ratio_rat_conv_monomial_w.h,
	  one_flavor_ratio_rat_rat_monomial5d_w.h,
	  one_flavor_ratio_rat_rat_monomial_params_w.cc,
	  one_flavor_ratio_rat_rat_monomial_params_w.h,
	  one_flavor_ratio_rat_rat_monomial_w.h, rat_approx.h,
	  rat_approx_aggregate.cc, rat_approx_aggregate.h,
	  rat_approx_factory.h, remez_rat_approx.cc, remez_rat_approx.h,
	  two_flavor_hasenbusch_monomial5d_w.h,
	  two_flavor_hasenbusch_monomial_params_w.cc,
	  two_flavor_hasenbusch_monomial_params_w.h,
	  two_flavor_hasenbusch_monomial_w.h, two_flavor_monomial5d_w.h,
	  two_flavor_monomial_w.h,
	  two_flavor_ratio_conv_conv_monomial5d_w.h,
	  two_flavor_ratio_conv_conv_monomial_params_w.cc,
	  two_flavor_ratio_conv_conv_monomial_params_w.h,
	  two_flavor_ratio_conv_conv_monomial_w.h,
	  two_flavor_ratio_conv_rat_monomial5d_w.h,
	  two_flavor_ratio_conv_rat_monomial_params_w.cc,
	  two_flavor_ratio_conv_rat_monomial_params_w.h,
	  two_flavor_ratio_conv_rat_monomial_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h,
	  unprec_one_flavor_ratio_rat_conv_monomial5d_w.cc,
	  unprec_one_flavor_ratio_rat_conv_monomial5d_w.h,
	  unprec_one_flavor_ratio_rat_conv_monomial_w.cc,
	  unprec_one_flavor_ratio_rat_conv_monomial_w.h,
	  unprec_one_flavor_ratio_rat_rat_monomial5d_w.cc,
	  unprec_one_flavor_ratio_rat_rat_monomial5d_w.h,
	  unprec_one_flavor_ratio_rat_rat_monomial_w.cc,
	  unprec_one_flavor_ratio_rat_rat_monomial_w.h,
	  unprec_two_flavor_hasenbusch_monomial5d_w.cc,
	  unprec_two_flavor_hasenbusch_monomial5d_w.h,
	  unprec_two_flavor_hasenbusch_monomial_w.cc,
	  unprec_two_flavor_hasenbusch_monomial_w.h,
	  unprec_two_flavor_monomial5d_w.h, unprec_two_flavor_monomial_w.h,
	  unprec_two_flavor_ratio_conv_conv_monomial5d_w.cc,
	  unprec_two_flavor_ratio_conv_conv_monomial5d_w.h,
	  unprec_two_flavor_ratio_conv_conv_monomial_w.cc,
	  unprec_two_flavor_ratio_conv_conv_monomial_w.h,
	  unprec_two_flavor_ratio_conv_rat_monomial5d_w.cc,
	  unprec_two_flavor_ratio_conv_rat_monomial5d_w.h,
	  unprec_two_flavor_ratio_conv_rat_monomial_w.cc,
	  unprec_two_flavor_ratio_conv_rat_monomial_w.h: Major overhaul of
	  monomial structure which are now of the form

	   pseudoferm term		   tag
	  A=M^dag*M chi*A_1^-1*chi		     two_flavor
	  chi*M_2*A_1^-1*M_2^dag*chi	   two_flavor_ratio_conv_conv
	  chi*R(A_2)*A_1^-1*R(A_2)*chi	   two_flavor_ratio_conv_rat
	  chi*R(A_1)*chi		   one_flavor_rat
	  chi*M_2*R(A_1)*M_2^dag*chi	   one_flavor_ratio_rat_conv
	  chi*R(A_2)*R(A_1)*R(M_2)*chi	   one_flavor_ratio_rat_rat

	  This structure exists for both 4D and 5D variants. Not all are
	  implemented at the level of the derivatives, but can be. The 5D
	  monomials no longer have an explicit reference to the
	  Pauli-Villars (PV) linOpPV.  That linOp is now added as an
	  appropriate separate monomial or the M_2 term. This is handled
	  simply by giving a DWF-like fermact with a quark mass of 1, or it
	  might require a kind of PV fermact in the case of some of the
	  more esoteric 5D actions.

2008-05-23 14:56  bjoo

	* tests/t_leapfrog/t_leapfrog.metric.xml: Loosened this criterion 1
	  order of magnitude

2008-05-23 14:40  edwards

	* lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc,
	  fixed_random_ferm_monomial.h: Removed exposed "name" from next to
	  the registration function.

2008-05-23 14:39  edwards

	* lib/update/molecdyn/monomial/:
	  central_tprec_logdet_tt_monomial_w.cc,
	  central_tprec_logdet_tt_monomial_w.h,
	  eoprec_logdet_ee_monomial_w.cc, eoprec_logdet_ee_monomial_w.h,
	  eoprec_logdet_two_flavor_monomial_w.cc,
	  eoprec_logdet_two_flavor_monomial_w.h: Removed the exposed "name"
	  from the registration. Now private to the cc file.

2008-05-23 07:37  tag chroma3-29-2

2008-05-23 07:37  bjoo

	* lib/actions/ferm/: fermacts/clover_fermact_params_w.cc,
	  fermacts/clover_fermact_params_w.h, linop/clover_term_qdp_w.cc:
	  Added zero energy to clover logdet

2008-05-22 14:50  caubin

	* lib/meas/hadron/: delta_2pt_w.cc, delta_2pt_w.h: Added parity
	  choice when doing minimal necessary contractions.

2008-05-22 11:13  edwards

	* NEWS: Changed to 3.29.2

2008-05-22 11:10  edwards

	* aclocal.m4, configure: Induced changes

2008-05-22 11:09  edwards

	* configure.ac: Changed to 3.29.2

2008-05-22 11:07  edwards

	* README: Now updated.

2008-05-22 11:05  edwards

	* README: Updates.

2008-05-22 10:58  edwards

	* NEWS: Info on 3.29.1

2008-05-22 10:51  edwards

	* aclocal.m4: Induced changes

2008-05-22 10:49  edwards

	* configure.ac: Changed to 3.29.1

2008-05-22 10:33  edwards

	* aclocal.m4: Induced changes

2008-05-21 13:07  bjoo

	* aclocal.m4, configure,
	  lib/actions/gauge/gaugeacts/aniso_sym_gaugeact_params.cc,
	  lib/actions/gauge/gaugeacts/aniso_sym_gaugeact_params.h,
	  lib/actions/gauge/gaugeacts/aniso_sym_spatial_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/aniso_sym_temporal_gaugeact.cc,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  tests/regres.pl,
	  tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.metric.xml,
	  tests/t_leapfrog/t_leapfrog.metric.xml: Added some precision
	  related tweaks into some monomials and the HMC

2008-05-21 11:54  bjoo

	* tests/t_leapfrog/: t_leapfrog.metric.xml,
	  t_leapfrog.prec_contfrac.ini.xml,
	  t_leapfrog.prec_contfrac.log.xml: Changed metric to check
	  individual KE and PE changes rather than overall change.
	  Sometimes the overall change is only good to 1 sig fig - this is
	  bad

2008-05-21 11:15  bjoo

	* tests/t_leapfrog/: regres.pl, t_leapfrog.2+2_gaugeact.log.xml,
	  t_leapfrog.aniso_spectrum.log.xml,
	  t_leapfrog.aniso_sym_spatial.log.xml,
	  t_leapfrog.aniso_sym_spatial_plus_temporal.log.xml,
	  t_leapfrog.aniso_sym_temporal.log.xml,
	  t_leapfrog.fixed_X_action_stout.log.xml,
	  t_leapfrog.lw.sfnonpt.log.xml, t_leapfrog.metric.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  t_leapfrog.prec_1flav_wilson.log.xml,
	  t_leapfrog.prec_2flav_clover.log.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.log.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.log.xml,
	  t_leapfrog.prec_clover_stout.log.xml,
	  t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  t_leapfrog.prec_parwilson.log.xml, t_leapfrog.prec_slrc.log.xml,
	  t_leapfrog.prec_slrc.sfnonpt.log.xml,
	  t_leapfrog.prec_wilson.bicgstab.log.xml,
	  t_leapfrog.prec_wilson.log.xml, t_leapfrog.rect_gaugeact.log.xml,
	  t_leapfrog.rect_gaugeact_1.log.xml,
	  t_leapfrog.rect_gaugeact_aniso.log.xml,
	  t_leapfrog.rect_gaugeact_c1t0.log.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.log.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.log.xml,
	  t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.log.xml,
	  t_leapfrog.unprec_wilson.log.xml,
	  t_leapfrog.wilson_gaugeact.log.xml,
	  t_leapfrog.wilson_gaugeact_aniso_mom.log.xml,
	  t_leapfrog.wilson_gaugeact_st.log.xml: Regenerated the
	  regressions, and added a metric that checks on Delta H. This is
	  so that we can check on changes to the energy calc routines -
	  that need to change the deltaH-s invariant

2008-05-21 10:09  bjoo

	* mainprogs/tests/t_leapfrog.cc: Added a DeltaH in the log for
	  t_leafprog.

2008-05-20 14:23  kostas

	* lib/meas/hadron/barspinmat_w.cc: add fix to FRANKLIN gcc compiler
	  bug

2008-05-20 14:18  kostas

	* lib/meas/hadron/: delta_2pt_w.cc, delta_2pt_w.h: added minimal
	  set of contractions

2008-05-16 17:53  edwards

	* lib/Makefile.am: Added inline_rotate_spin_w.cc

2008-05-16 17:50  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_rotate_spin_w.cc, inline_rotate_spin_w.h: Added a spin
	  rotation.

2008-05-14 15:24  bjoo

	* tests/regres.pl: Oops

2008-05-14 15:24  bjoo

	* aclocal.m4, configure, lib/central_tprec_linop.h,
	  lib/meas/hadron/hadron_contract.cc,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.cc,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  mainprogs/tests/t_clover.cc, tests/regres.pl: Added a bunch of
	  include typeinfos so that bad cast would work with gcc-4

2008-05-14 10:16  kostas

	* tests/chroma/hadron/qqqNucNuc/: qqqNucNuc_all.ini.xml,
	  qqqNucNuc_all.out.xml, qqqNucNuc_vector.ini.xml,
	  qqqNucNuc_vector.out.xml: added input and output for new features

2008-05-14 10:08  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added doubly
	  charmed baryons

2008-05-14 08:32  bjoo

	* tests/chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml: New output
	  containing the doVectorMeson tag put in by Kostas

2008-05-14 00:13  edwards

	* lib/update/molecdyn/monomial/: force_monitors.cc,
	  force_monitors.h, remez_coeff.h, remez_gmp.h, remez_stub.h:
	  Changed doxygen comments.

2008-05-13 22:52  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.h: added flag for
	  verctor mesons

2008-05-13 22:51  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed a bug

2008-05-13 22:39  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added flag for
	  doing vector mesons

2008-05-13 17:59  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: fixed bugs

2008-05-13 17:53  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added charmed
	  mesons

2008-05-13 17:31  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added charmed
	  baryons

2008-05-12 15:03  bjoo

	* AUTHORS, COPYING, INSTALL, Makefile.am, NEWS, README, TODO,
	  acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac: Added stuff

2008-05-12 14:57  bjoo

	* mainprogs/tests/: Makefile.am, t_clover.cc: Clover Operator
	  Benchmarker added

2008-05-12 11:00  bjoo

	* lib/actions/ferm/linop/eoprec_clover_linop_ssecombined_w.cc:
	  Tried to rearrange clover operator() pulling out the preposting
	  of receives to the operator level and before the clover applies

2008-05-12 10:50  bjoo

	* other_libs/sse_wilson_dslash/: include/sse_dslash.h,
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_scalar.c: Exposed preposting of receives

2008-05-08 23:58  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/hadron/simple_hadron_operator_w.cc,
	  lib/meas/hadron/simple_hadron_operator_w.h,
	  lib/meas/inline/hadron/inline_stoch_hadron_w.cc: added new codes

2008-05-08 04:35  edwards

	*
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h:
	  Changed a comment - we are not directly using pauli-villars here.

2008-05-07 10:44  tag chroma3-29-1

2008-05-07 10:44  bjoo

	* lib/actions/ferm/qprop/mdwf_solver.cc: Changed logging option

2008-05-06 21:12  bjoo

	* lib/actions/ferm/: fermacts/clover_fermact_params_w.cc,
	  fermacts/clover_fermact_params_w.h,
	  linop/central_tprec_nospin_utils.h,
	  linop/eo3dprec_s_cprec_t_clover_linop_w.cc,
	  linop/eo3dprec_s_cprec_t_clover_linop_w.h,
	  linop/eo3dprec_s_cprec_t_wilson_linop_w.cc,
	  linop/eo3dprec_s_cprec_t_wilson_linop_w.h,
	  linop/iluprec_s_cprec_t_clover_linop_w.cc,
	  linop/iluprec_s_cprec_t_clover_linop_w.h,
	  linop/iluprec_s_cprec_t_wilson_linop_w.h,
	  linop/iluprec_s_cprec_t_wilsonlike_linop_w.h,
	  linop/unprec_s_cprec_t_wilson_linop_w.cc,
	  linop/unprec_s_cprec_t_wilson_linop_w.h: Added support for temp
	  prec. MaxNorm trick

2008-05-06 09:25  tag chroma3-29-0

2008-05-06 09:25  bjoo

	* NEWS, configure, lib/actions/ferm/qprop/mdwf_solver.cc,
	  lib/actions/ferm/qprop/mdwf_solver.h: Makefile.in

2008-05-06 09:24  bjoo

	* configure.ac: configure.ac next

2008-05-06 09:23  bjoo

	* lib/Makefile.am: Makefiles.ams first

2008-05-06 07:45  bjoo

	* lib/: Makefile.am, actions/ferm/qprop/mdwf_solver.h: Fixed a
	  Makefile.am oops

2008-05-05 16:12  bjoo

	* lib/actions/ferm/qprop/mdwf_solver.h: Added Flopcounting to MDWF
	  Solver

2008-05-05 15:33  bjoo

	* NEWS, chroma-config.in, configure,
	  lib/chroma_config_internal.h.in: Added ShamirDWF interface to
	  MDWF Library from MIT. Double Prec only until mixed precision
	  issues are resolved

2008-05-05 15:27  bjoo

	* configure.ac, lib/Makefile.am, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: MDWF Changes

2008-05-05 15:18  bjoo

	* lib/actions/ferm/qprop/mdwf_solver.h: This seems to work. I am
	  committing only the double precision variant just now, modulo
	  sorting out why the mixed versions don't work

2008-05-05 15:11  bjoo

	* lib/actions/ferm/qprop/dwf_qpropt_w.h: dwf_qpropt_w.h changed to
	  allow new MDWF solver for DWF Props

2008-05-04 10:21  bjoo

	*
	  tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.metric.xml:
	  Loosened comparison criteria on this test from 1e-8 to 1e-6

2008-05-02 19:53  tag chroma3-28-5

2008-05-02 19:53  bjoo

	* NEWS,
	  tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.ini.xml,
	  tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.metric.xml,
	  tests/chroma/io/usqcd_ddpairs_prop/usqcd_prop_readwrite_internal.out.xml:
	  Updated PROP reader writer internal test

2008-05-02 17:34  kostas

	* lib/meas/inline/hadron/: inline_stoch_hadron_w.cc,
	  inline_stoch_hadron_w.h: next step

2008-05-02 17:10  bjoo

	* NEWS: NEWS chroma now needs qdp1-26-0 to build

2008-05-02 17:03  bjoo

	* NEWS, lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.cc,
	  lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.h,
	  lib/meas/inline/io/inline_usqcd_write_ddpairs_prop.cc,
	  tests/regres.pl: OK! This is version 3.28.5

2008-05-02 17:01  bjoo

	* tests/chroma/io/usqcd_ddpairs_prop/regres.pl: Makefile

2008-05-02 16:58  bjoo

	* configure.ac, configure: Phased commits 1

2008-05-02 16:41  bjoo

	* tests/chroma/io/usqcd_ddpairs_prop/: README,
	  usqcd_ddpairs_prop_read_foreign.ini.xml,
	  usqcd_ddpairs_prop_read_inheader.ini.xml,
	  usqcd_prop_readwrite_internal.ini.xml,
	  usqcd_prop_readwrite_internal.metric.xml,
	  usqcd_prop_readwrite_internal.out.xml: Added testfiles

2008-05-01 15:32  bjoo

	* lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc,
	  inline_usqcd_read_ddpairs_prop.h,
	  inline_usqcd_write_ddpairs_prop.cc,
	  inline_usqcd_write_ddpairs_prop.h: Reader and Writer now both do
	  something. Writing and Reading back seems OK for prop, but source
	  is corrupted.

2008-04-29 16:21  kostas

	* lib/meas/inline/hadron/: inline_qqqNucNuc_w.cc,
	  inline_stoch_hadron_w.cc: slight fixes...

2008-04-29 08:24  edwards

	* tests/chroma/hadron/stoch_group_baryon/: make_baryon_ops.ini.pl,
	  make_baryon_ops.ini.xml, make_baryon_ops.out.xml,
	  stoch_group_baryon.out.xml: Now have a whole chain. Can run
	  chroma for stoch_group_baryon to make its output, then run
	  make_baryon_ops on the result.

2008-04-29 08:20  edwards

	* tests/chroma/hadron/stoch_group_baryon/: Nucleon_G1g_1,
	  Nucleon_elem, Single_Site, Singly_Displaced,
	  make_baryon_ops.ini.pl, make_baryon_ops.ini.xml,
	  stoch_group_baryon.ini.pl, stoch_group_baryon.ini.xml,
	  stoch_group_baryon.out.xml: New input and output tests.

2008-04-29 07:51  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Indented.

2008-04-29 07:46  edwards

	* tests/chroma/hadron/stoch_group_baryon/:
	  create_chroma_xml_small_eo.pl, make_baryon_ops.ini.pl,
	  stoch_group_baryon.ini.pl, stoch_group_baryon.new.ini.xml: New
	  input file setup.

2008-04-29 07:46  edwards

	* mainprogs/make_ops/: Makefile, make_make_ops_input.pl,
	  make_ops.cc: Moved make_ops/make_ops.cc to
	  main/make_baryon_ops.cc Moved the input files to
	  chroma/tests/chroma/hadron/stoch_group_baryon.

2008-04-29 07:45  edwards

	* mainprogs/main/make_baryon_ops.cc: Moved
	  chroma/mainprogs/make_ops/make_ops.cc to this make_baryon_ops.cc

2008-04-29 07:44  edwards

	* mainprogs/main/Makefile.am: Added make_baryon_ops.

2008-04-29 07:34  edwards

	* lib/meas/inline/hadron/make_inline_stoch_group_baryon_input.pl:
	  Moved to the chroma/tests/chroma/hadron/stoch_group_baryon dir.

2008-04-29 07:34  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Removed
	  some unused diagnostic stuff.

2008-04-28 16:23  bjoo

	* lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc,
	  inline_usqcd_read_ddpairs_prop.h: Seems to read the DD Pairs

2008-04-26 13:03  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: small fix

2008-04-25 15:27  bjoo

	* lib/meas/inline/io/: inline_usqcd_read_ddpairs_prop.cc,
	  inline_usqcd_write_ddpairs_prop.cc: Stuff

2008-04-25 14:30  bjoo

	* lib/meas/inline/io/: inline_usqcd_write_ddpairs_prop.cc,
	  inline_usqcd_write_ddpairs_prop.h: Shell for Prop Writers (they
	  don't actually work yet)

2008-04-25 14:29  bjoo

	* lib/: Makefile.am, meas/inline/io/inline_io_aggregate.cc: Added
	  shell for QIO Writer

2008-04-25 14:08  bjoo

	* lib/Makefile.am, lib/meas/inline/io/inline_io_aggregate.cc,
	  lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.cc,
	  lib/meas/inline/io/inline_usqcd_read_ddpairs_prop.h,
	  other_libs/qdp-lapack/configure,
	  other_libs/sse_wilson_dslash/aclocal.m4,
	  other_libs/sse_wilson_dslash/configure: Initial shell measurement
	  to read USQCD DD Pair Propagator Format

2008-04-25 01:46  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc,
	  mainprogs/main/make_meson_ops.cc: Switched to general array of
	  displacements for right quark, and none for the left quark.

2008-04-25 01:45  edwards

	* tests/chroma/hadron/stoch_group_meson/: make_meson_ops.ini.pl,
	  make_meson_ops.ini.xml, make_meson_ops.out.xml,
	  stoch_group_meson.ini.pl, stoch_group_meson.ini.xml,
	  stoch_group_meson.out.xml, test_meson, two_displace: Switched to
	  general displacements for right quark and none on the first
	  quark.

2008-04-24 23:56  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Put a
	  gamma_5 on the source 0 quarks. This allows us to compute
	  eta^dag_1 * [some gamma and U] * gamma_5 * eta_0 and similarly
	  for the annihilation operator.

2008-04-24 23:55  edwards

	* tests/chroma/hadron/stoch_group_meson/stoch_group_meson.out.xml:
	  New elemental op output.

2008-04-24 23:40  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: little more
	  progress

2008-04-24 22:52  edwards

	* mainprogs/main/make_meson_ops.cc: Fixed how dilutions are
	  checked. In the meson case, the left and right of the source
	  correspond to the right and left quarks of the sink.

2008-04-24 22:51  edwards

	* tests/chroma/hadron/stoch_group_meson/:
	  create_chroma_xml_small_eo.pl, make_meson_ops.ini.pl,
	  make_meson_ops.ini.xml, make_meson_ops.out.xml,
	  stoch_group_meson.ini.pl, stoch_group_meson.out.xml, test_meson:
	  Fixed input and output for make_meson_ops. Now seems to run.
	  Renamed perl generator file to the make_meson_ops.ini.pl name.

2008-04-24 11:57  jbulava

	* lib/meas/inline/hadron/make_inline_stoch_group_baryon_input.pl:
	  added perl script to generate input for
	  inline_stoch_group_baryon_w.cc

2008-04-24 10:26  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  other_libs/qdp-lapack/aclocal.m4: Updated
	  inline_stoch_group_baryon

2008-04-24 10:17  edwards

	* lib/meas/: glue/qnaive.cc, glue/qnaive.h,
	  inline/glue/inline_glue_aggregate.h,
	  inline/glue/inline_qnaive.cc, inline/glue/inline_qnaive.h: Added
	  author names and cvs tags.

2008-04-24 10:14  edwards

	* lib/meas/inline/glue/inline_qnaive.cc: Added author notice.

2008-04-24 10:13  edwards

	* lib/meas/glue/qnaive.cc: Added an author notice.

2008-04-24 10:10  edwards

	* tests/chroma/glue/qtop_naive/qtop_naive.out.xml: New regression
	  output.

2008-04-24 10:07  edwards

	* aclocal.m4, configure: Induced changes

2008-04-24 10:07  edwards

	* lib/Makefile.am: Added qtop_naive and inline_qtop_naive.

2008-04-24 10:07  edwards

	* lib/meas/inline/glue/: inline_glue_aggregate.cc,
	  inline_glue_aggregate.h, inline_qnaive.cc, inline_qnaive.h: New
	  qtop_naive codes.

2008-04-24 10:07  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Small
	  changes in comments.

2008-04-24 10:06  edwards

	* tests/chroma/hadron/stoch_group_meson/:
	  create_chroma_xml_small_eo.pl, make_meson_ops.ini.pl,
	  make_meson_ops.ini.xml, make_meson_ops.out.xml,
	  stoch_group_meson.ini.xml, stoch_group_meson.out.xml, test_meson,
	  two_displace: New test input/output..

2008-04-24 10:04  edwards

	* tests/chroma/glue/qtop_naive/: qtop_naive.metric.xml, regres.pl:
	  Added qtop_naive regression.

2008-04-24 10:04  edwards

	* tests/regres.pl: Added qtop_naive

2008-04-24 09:55  edwards

	* lib/meas/glue/: qnaive.cc, qnaive.h: New version of qnaive from
	  C. Hagen.

2008-04-24 09:45  edwards

	* tests/chroma/glue/qtop_naive/qtop_naive.ini.xml: First version.

2008-04-24 01:41  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: [no log message]

2008-04-24 01:34  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: [no log message]

2008-04-24 01:20  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_stoch_hadron_w.cc,
	  lib/meas/inline/hadron/inline_stoch_hadron_w.h: added
	  stoch_hadron to the compilation chain

2008-04-23 23:13  edwards

	* mainprogs/main/: Makefile.am, make_meson_ops.cc: Added
	  make_meson_ops.cc

2008-04-23 16:05  bjoo

	* other_libs/qdp-lapack/configure: Automake remade this?

2008-04-23 15:14  bjoo

	* other_libs/sse_wilson_dslash/tests/: timeDslash.cc,
	  timeDslash3D.cc: No way to call a QMP barrier from the scalar
	  code. Replaced with an Internal::globalSum

2008-04-23 14:10  bjoo

	* other_libs/sse_wilson_dslash/:
	  lib/sse_su3dslash_32bit_parscalar_3d.c, tests/testvol.h,
	  tests/timeDslash.cc, tests/timeDslash3D.cc: Diddled around some.
	  Added some new options, that have yet to make it into the
	  configure.

2008-04-23 09:43  edwards

	* tests/: chroma/glue/wilslp/wilslp.out.xml,
	  purgaug/purgaug.2+2.1loop.out.xml, purgaug/purgaug.2+2.out.xml,
	  purgaug/purgaug.out.xml, purgaug/purgaug.sfnonpt.out.xml:
	  Updated.

2008-04-23 00:06  kostas

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: added
	  BinaryWriter

2008-04-22 23:56  edwards

	* tests/chroma/hadron/stoch_group_meson/:
	  stoch_group_meson.out.xml, two_displace: Shortened elemental op
	  file.

2008-04-22 23:54  edwards

	* tests/chroma/hadron/stoch_group_meson/:
	  stoch_group_meson.out.xml, two_displace: Use correct form of
	  elemental op file.

2008-04-22 22:58  edwards

	* tests/chroma/hadron/stoch_group_meson/stoch_group_meson.out.xml:
	  New output

2008-04-22 22:57  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Got rid of
	  permutations/orderings. Seems to run. Possibly correct.  The
	  creation op = eta^dag*eta and the annih op = psi^dag*psi.

2008-04-22 00:32  kostas

	* other_libs/qdp-lapack/: configure, configure.ac,
	  include/qdp-lapack_config_internal.h.in,
	  include/qdp-lapack_numerical.h: autoconf stuff

2008-04-21 23:50  kostas

	* other_libs/qdp-lapack/lib/: eigpcg.c, Complex.c, IncrEigpcg.c,
	  numerical.c, ortho.c, restart_X.c, wtime.c: [no log message]

2008-04-21 15:13  bjoo

	* other_libs/sse_wilson_dslash/: aclocal.m4, configure,
	  lib/sse_su3dslash_32bit_parscalar.c, tests/testvol.h,
	  tests/timeDslash.cc: Cray type stuff

2008-04-20 23:20  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: Removed
	  some code that isn't used.

2008-04-20 23:19  edwards

	* lib/meas/inline/hadron/inline_stoch_group_meson_w.cc: First
	  version. It runs, but is not correct yet.

2008-04-20 23:19  edwards

	* lib/meas/hadron/: dilution_quark_source_const_w.cc,
	  dilution_quark_source_const_w.h, dilution_scheme.h,
	  dilution_scheme_aggregate.cc: Did some indenting so I could
	  figure out what this code is doing...

2008-04-20 23:18  edwards

	* tests/chroma/hadron/stoch_group_meson/:
	  create_chroma_xml_small_eo.pl, regres.pl,
	  stoch_group_meson.ini.xml, stoch_group_meson.out.xml,
	  two_displace: First version.

2008-04-20 12:03  edwards

	* other_libs/qdp-lapack/configure: Induced changes.

2008-04-20 12:00  edwards

	* aclocal.m4, configure: Induced changes

2008-04-20 12:00  edwards

	* lib/Makefile.am: Added inline_stoch_group_meson_w.*

2008-04-20 11:59  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_stoch_group_meson_w.cc, inline_stoch_group_meson_w.h:
	  Copied over the current stoch_group_baryon onto the
	  stoch_group_meson, and renamed all the appropriate bits to be 2
	  quarks.

2008-04-20 11:46  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.h: Simplified
	  the include files - less dependencies.

2008-04-18 23:13  edwards

	* lib/meas/inline/glue/inline_wilslp.cc: Added printing of Mesplq
	  before and after creategaugestate call.

2008-04-18 23:12  edwards

	* lib/actions/ferm/fermstates/stout_fermstate_params.cc: Added test
	  if there are both  orthog_dir and smear_in_this_dirP flag turned
	  on.

2008-04-17 23:16  kostas

	* other_libs/qdp-lapack/lib/: eigpcg.c, numerical.c: ...

2008-04-17 16:15  kostas

	* other_libs/qdp-lapack/lib/numerical.c: commented out the CDOTC
	  since it crashes the CRAY...

2008-04-17 01:22  kostas

	* other_libs/qdp-lapack/: include/qdp-lapack_numerical.h,
	  lib/eigpcg.c, lib/numerical.c: some more fixes and improvements

2008-04-15 23:24  kostas

	* other_libs/qdp-lapack/: include/qdp-lapack_numerical.h,
	  lib/numerical.c: fixed global sum

2008-04-15 22:09  kostas

	* other_libs/qdp-lapack/AUTHORS: ..

2008-04-15 22:00  kostas

	* aclocal.m4, configure, configure.ac,
	  lib/chroma_config_internal.h.in: autoconf stuff for enabling
	  optimized eigcg

2008-04-15 10:24  kostas

	* other_libs/qdp-lapack/lib/: IncrEigpcg.c, IncrEigpcg_stub.c,
	  numerical.c: more QMP stuff:

2008-04-15 10:17  kostas

	* other_libs/qdp-lapack/: acinclude.m4, aclocal.m4, configure,
	  configure.ac, include/qdp-lapack_numerical.h, lib/Makefile.am:
	  autoconf stuff

2008-04-13 17:07  bjoo

	* other_libs/sse_wilson_dslash/: configure, configure.ac,
	  include/sse_config_internal.h.in, lib/dispatch_parscalar.c,
	  lib/dispatch_scalar.c, tests/testDslash3D.cc,
	  tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc,
	  tests/timeDslash3D.cc: Added openMP support. Thanks Xu

2008-04-09 23:16  kostas

	* lib/actions/ferm/invert/inv_eigcg2.cc: [no log message]

2008-04-09 23:01  kostas

	* lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h,
	  syssolver_linop_eigcg_qdp.cc: optimization of the QDP eigcg

2008-04-09 09:11  kostas

	* lib/actions/ferm/invert/syssolver_linop_eigcg_qdp.cc: yet an
	  other restart bug..

2008-04-09 08:39  kostas

	* lib/actions/ferm/invert/syssolver_linop_eigcg_qdp.cc: fixed
	  restarting

2008-04-09 00:59  kostas

	* lib/actions/ferm/invert/syssolver_linop_eigcg_qdp.cc: fix

2008-04-09 00:49  kostas

	* lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h,
	  syssolver_eigcg_params.cc, syssolver_eigcg_params.h,
	  syssolver_linop_OPTeigcg.cc, syssolver_linop_eigcg.h,
	  syssolver_linop_eigcg_array.cc, syssolver_linop_eigcg_qdp.cc:
	  made OPTeigcg and eigcg params to be the same. improved a bit the
	  old eigcg

2008-04-07 15:19  jbulava

	* mainprogs/make_ops/: Makefile, make_ops.cc: Fixed bug in
	  make_ops.cc

2008-04-07 01:04  edwards

	* lib/actions/ferm/invert/syssolver_linop_eigcg.cc: Moved to
	  syssolver_linop_eig_qdp.cc

2008-04-07 00:58  edwards

	* lib/actions/ferm/invert/: syssolver_linop_aggregate.cc,
	  syssolver_linop_eigcg.h, syssolver_linop_eigcg_qdp.cc,
	  syssolver_linop_eigcg_qdp.h: Added
	  syssolver_linop_eigcg_qdp.{h,cc}, and syssolver_linop_eigcg.h
	  which is now a wrapper for the register of the appropriate
	  optimized inverter.

2008-04-07 00:57  edwards

	* lib/Makefile.am: Added syssolver_linop_eigcg_qdp.{h,cc} and a
	  wrapper for the syssolver_linop_eigcg.h

2008-04-05 15:04  edwards

	* lib/actions/ferm/invert/: multi_syssolver_linop_mr.h,
	  multi_syssolver_mdagm_cg.h, multi_syssolver_mdagm_cg_array.h,
	  syssolver_linop_OPTeigcg.h, syssolver_linop_bicgstab.h,
	  syssolver_linop_cg.h, syssolver_linop_cg_array.h,
	  syssolver_linop_cg_timing.h, syssolver_linop_eigcg.h,
	  syssolver_linop_eigcg_array.h, syssolver_linop_mr.h,
	  syssolver_mdagm_bicgstab.h, syssolver_mdagm_cg.h,
	  syssolver_mdagm_cg_array.h, syssolver_mdagm_cg_timing.h,
	  syssolver_mdagm_mr.h, syssolver_polyprec_cg.h: Removed the "name"
	  from the export in the Env. It's not needed. Just the register
	  function is the relevant bit.

2008-04-05 15:04  edwards

	* configure: Induced changes.

2008-04-05 15:02  edwards

	* aclocal.m4: Induced changes

2008-04-05 15:02  edwards

	* configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in:
	  Added configuration control for compiling lapack related
	  routines.

2008-04-05 14:59  edwards

	* other_libs/qdp-lapack/lib/: IncrEigpcg_stub.c, Makefile.am: Added
	  IncrEigpcg_stub.c

2008-04-05 09:45  edwards

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: Replace a
	  LatticeFermion with the template type "T".

2008-04-05 00:10  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed
	  merging problem...

2008-04-05 00:07  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: andreas's
	  fixes

2008-04-04 23:54  kostas

	* other_libs/qdp-lapack/include/: qdp-lapack_eigpcg.h,
	  qdp-lapack_numerical.h, qdp-lapack_wtime.h: andreas's fixes

2008-04-04 23:53  kostas

	* other_libs/qdp-lapack/lib/: eigpcg.c, numerical.c: andrea's fixes

2008-04-04 23:42  kostas

	* other_libs/qdp-lapack/lib/IncrEigpcg.c: [no log message]

2008-04-03 22:30  kostas

	* other_libs/qdp-lapack/lib/eigpcg.c: ...

2008-04-03 22:23  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed one
	  last bug

2008-04-03 11:58  kostas

	* lib/Makefile.am, lib/actions/ferm/invert/containers.h,
	  lib/actions/ferm/invert/syssolver_OPTeigcg_params.cc,
	  lib/actions/ferm/invert/syssolver_OPTeigcg_params.h,
	  lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc,
	  lib/actions/ferm/invert/syssolver_linop_OPTeigcg.h,
	  other_libs/qdp-lapack/lib/IncrEigpcg.c: still debugging

2008-04-03 00:27  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: ...still
	  working on it...

2008-04-02 23:07  kostas

	* other_libs/qdp-lapack/lib/: cdotcsub.f, eigpcg.c: fixed yet on
	  other bug

2008-04-02 22:22  kostas

	* lib/actions/ferm/invert/syssolver_eigcg_params.cc: ... little bug
	  fixed

2008-04-02 13:55  kostas

	* other_libs/qdp-lapack/: configure, configure.ac,
	  include/qdp-lapack_wtime.h, lib/Makefile.am, lib/cdotcsub.f,
	  lib/wtime.c, lib/zdotcsub.f: added missing source and autoconf
	  for fortran

2008-04-02 13:54  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: now compiles
	  and links

2008-04-02 13:05  kostas

	* lib/actions/ferm/invert/: syssolver_linop_OPTeigcg.cc,
	  syssolver_linop_aggregate.cc: liked it in..

2008-04-02 12:45  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: compiles
	  now...

2008-04-02 08:24  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed an
	  other error... still not compiling

2008-04-02 00:08  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed
	  several arguments of the call to IncrEigcg including the
	  MatrixMatvec.  Now it fails to complie the MatrixMatvec routine
	  if I comment in the IncrEigpcg

2008-04-01 23:16  kostas

	* lib/actions/ferm/invert/syssolver_linop_OPTeigcg.cc: fixed the
	  float but the MatrixMatvec does not work... Commented out the
	  IncrEigCG

2008-04-01 22:55  kostas

	* lib/actions/ferm/invert/containers.h: Evals are floats

2008-04-01 22:45  kostas

	* other_libs/qdp-lapack/lib/: IncrEigpcg.c, IncrEigpcg_epsRes.c,
	  Makefile.am: added the -DUSE_QMP flag to automake and QMP_fprintf

2008-04-01 17:18  kostas

	* other_libs/qdp-lapack/include/: qdp-lapack_Complex.h,
	  qdp-lapack_IncrEigpcg.h, qdp-lapack_eigpcg.h: fixed

2008-04-01 17:16  kostas

	* lib/actions/ferm/invert/: syssolver_OPTeigcg_params.cc,
	  syssolver_OPTeigcg_params.h, syssolver_linop_OPTeigcg.cc,
	  syssolver_linop_OPTeigcg.h: OPT eigCG linged in

2008-04-01 15:59  kostas

	* other_libs/qdp-lapack/: include/Makefile.am,
	  include/qdp-lapack_Complex.h, include/qdp-lapack_IncrEigpcg.h,
	  include/qdp-lapack_eigpcg.h, include/qdp-lapack_fortran_lapack.h,
	  include/qdp-lapack_numerical.h,
	  include/qdp-lapack_numerical_private.h,
	  include/qdp-lapack_ortho.h, include/qdp-lapack_restart_X.h,
	  lib/Complex.c, lib/Makefile.am, lib/eigpcg.c, lib/restart_X.c:
	  builds

2008-04-01 15:22  kostas

	* other_libs/qdp-lapack/lib/: Complex.c, IncrEigpcg.c,
	  IncrEigpcg_epsRes.c, Makefile.am, eigpcg.c, numerical.c, ortho.c,
	  restart_X.c: eigcg

2008-04-01 00:02  kostas

	* lib/actions/ferm/invert/: syssolver_linop_OPTeigcg.cc,
	  syssolver_linop_OPTeigcg.h: added some improvements for subsets

2008-03-30 23:22  kostas

	* lib/actions/ferm/invert/: containers.h,
	  syssolver_OPTeigcg_params.cc, syssolver_OPTeigcg_params.h,
	  syssolver_linop_OPTeigcg.cc, syssolver_linop_OPTeigcg.h: started
	  the linking with the optimized EigCG

2008-03-29 15:15  mcneile

	* lib/actions/ferm/linop/improvement_terms_s.h: Added new prototype
	  for naik links with coefficient as argument.

2008-03-29 01:02  kostas

	* lib/actions/ferm/invert/syssolver_eigcg_params.cc: little bug...

2008-03-29 00:00  kostas

	* lib/meas/inline/hadron/inline_qqqNucNuc_w.cc: added vector
	  messons

2008-03-28 23:41  kostas

	* lib/actions/ferm/invert/: syssolver_eigcg_params.cc,
	  syssolver_eigcg_params.h, syssolver_linop_eigcg.cc,
	  syssolver_linop_eigcg_array.cc: added multiple restart

2008-03-28 23:40  kostas

	* lib/meas/hadron/: qqbar_w.cc, qqbar_w.h: added vector mesons

2008-03-27 06:37  mcneile

	* docs/readme_hisq: Updated "documentation".

2008-03-27 06:19  mcneile

	* lib/actions/ferm/linop/naik_term_s.cc: There is a version of the
	  code that takes a parameter for the Naik term. Umm too much cut
	  and pasty.

2008-03-27 06:17  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: I have added the
	  mass dependent correction to Naik term as a parameter.

2008-03-26 10:24  mcneile

	* tests/spectrum_s/: regres.pl, spectrum_s_HISQ.ini.xml,
	  spectrum_s_HISQ.out.xml: These are the regression tests for the
	  HISQ inverter.  The ode has been checked against Eduardos's on a
	  small lattice.

2008-03-25 07:16  mcneile

	* tests/spectrum_s/: spectrum_s.ini.xml, spectrum_s.out.xml: The
	  format of the files has slighty changed so that we can choose
	  ASQTAS or HISQ at run time. This will also allow me to put the
	  HISQ code into the regression framework.

2008-03-25 07:09  mcneile

	* lib/meas/hadron/stag_scalars_s.cc: Eric has updated the comments
	  on the operators.

2008-03-25 07:02  mcneile

	* mainprogs/main/spectrum_s.cc: I have added the linkage hack so
	  that we can choose between HISQ/ASTAD at run time. UMM, no doubt
	  this means we can't compile on the QCDOC anymore.

2008-03-25 06:58  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h: The code has been updated so that the either
	  HISQ or ASQTAD can be choosen.

2008-03-25 06:53  mcneile

	* lib/actions/ferm/fermacts/: hisq_fermact_params_s.cc,
	  hisq_fermact_params_s.h: Added parameter for the dispersion
	  relation.

2008-03-25 06:51  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: I have added a hook
	  for the epsilon term in the Naik term.  This is not working yet.

2008-03-25 06:46  mcneile

	* lib/actions/ferm/invert/: invcg1.cc, invcg1.h: I have added code
	  to do a minimum number of iterations. The defaults should be
	  sensible. This is nedded for charm.

2008-03-25 06:43  mcneile

	* lib/actions/ferm/invert/: syssolver_cg_params.cc,
	  syssolver_cg_params.h: Added a minimum interation counter
	  (default zero).  This is useful for charm (honestly).

2008-03-18 12:59  edwards

	* lib/meas/inline/io/qio_read_obj_funcmap.cc: Added RitzPairs.

2008-03-17 11:27  edwards

	* tests/chroma/hadron/propagator/prec_clover.eigcg.out.xml: Updated
	  regression.

2008-03-17 11:22  edwards

	* lib/meas/: inline/hadron/inline_stoch_group_meson_w.cc,
	  inline/hadron/inline_stoch_group_meson_w.h,
	  hadron/meson_spec_2pt_w.cc, hadron/meson_spec_2pt_w.h: First
	  version.

2008-03-11 20:48  bjoo

	* other_libs/sse_wilson_dslash/tests/: timeDecomp.cc, timeDecomp.h,
	  time_decomp.cc: An extra test to check on prefetching - not much
	  use but want make check to be happy

2008-03-11 17:37  mcneile

	* mainprogs/tests/: DATA_v3, t_propagator_s.cc: I have cleaned up
	  the file and program.

2008-03-11 17:02  mcneile

	* mainprogs/tests/: DATA_v3, t_propagator_s.cc: These use the new
	  factory function for the improved staggered actions.

2008-03-11 16:57  mcneile

	* lib/actions/ferm/fermacts/fermacts_aggregate_s.cc: I have added
	  HISQ to this.

2008-03-11 15:45  bjoo

	* other_libs/sse_wilson_dslash/: include/dispatch_parscalar.h,
	  lib/shift_tables_parscalar.c,
	  lib/sse_su3dslash_32bit_parscalar.c, tests/Makefile.am,
	  tests/testvol.h, tests/timeDslash.cc: Added prefetching to 2cb 4d
	  dslash single prec only. Appears to help on 7n on up to 32 cpus
	  and we need to check on other architectures

2008-03-11 15:42  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  mainprogs/make_ops/make_ops.cc: make_ops.cc now outputs one file
	  for each t0. Minor changes to inline_stoch_group_baryon

2008-03-10 13:32  bjoo

	* lib/: Makefile.am, actions/ferm/invert/minvcg2.cc,
	  actions/ferm/invert/minvcg2.h,
	  actions/ferm/invert/multi_syssolver_mdagm_cg.h,
	  actions/ferm/qprop/quarkprop4_w.cc: Added MinvCG2

2008-03-07 11:47  jbulava

	* lib/meas/hadron/dilution_quark_source_const_w.cc,
	  lib/meas/hadron/dilution_quark_source_const_w.h,
	  lib/meas/hadron/dilution_scheme.h,
	  lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  lib/meas/inline/hadron/inline_stoch_group_baryon_w.h,
	  mainprogs/make_ops/Makefile, mainprogs/make_ops/make_ops.cc:
	  Handled the kappa/mass ambiquitity in prop headers

2008-03-07 10:37  edwards

	* tests/chroma/hadron/propagator/prec_clover.eigcg.ini.xml: Use the
	  correct params for eigcg to actually do something.

2008-03-05 16:52  bjoo

	* tests/spectrum_s/DATA_v3: Input data for t_propagator_s

2008-03-05 16:50  bjoo

	* mainprogs/tests/t_propagator_s.cc: Moving t_propagator_s to using
	  factories

2008-03-05 16:12  bjoo

	* mainprogs/tests/t_propagator_s.cc: Cursory modifications for
	  Craig

2008-03-05 14:45  bjoo

	* other_libs/sse_wilson_dslash/: lib/shift_tables_parscalar.c,
	  lib/shift_tables_parscalar_3d.c, lib/shift_tables_scalar.c,
	  lib/shift_tables_scalar_3d.c,
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_32bit_parscalar_3d.c,
	  lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_32bit_scalar_3d.c,
	  lib/sse_su3dslash_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar_3d.c,
	  lib/sse_su3dslash_64bit_scalar.c,
	  lib/sse_su3dslash_64bit_scalar_3d.c, tests/testDslash3D.cc,
	  tests/testDslashFull.cc: Scalar and parscalar single and double
	  both work, and I can change the order of working through the
	  coordinates when setting up the site table

2008-03-04 17:38  tag chroma3-28-4

2008-03-04 17:38  bjoo

	* lib/actions/ferm/linop/: lwldslash_3d_sse_w.cc,
	  lwldslash_array_sse_w.cc, lwldslash_w_sse.cc: Added changes for
	  new dslash. Now needs qdp1-25-2 at least

2008-03-04 17:09  bjoo

	* other_libs/sse_wilson_dslash/: tests/testDslash3D.cc,
	  tests/timeDslash3D.cc, include/sse_dslash_3d.h,
	  lib/sse_su3dslash_32bit_parscalar_3d.c: Fixed a prototype
	  leftover from testing

2008-03-04 16:50  bjoo

	* other_libs/sse_wilson_dslash/: configure, configure.ac,
	  include/shift_tables_parscalar.h, include/shift_tables_scalar.h,
	  include/sse_dslash.h, include/sse_dslash_3d.h,
	  lib/shift_tables_parscalar.c, lib/shift_tables_parscalar_3d.c,
	  lib/shift_tables_scalar.c, lib/shift_tables_scalar_3d.c,
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_32bit_parscalar_3d.c,
	  lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_32bit_scalar_3d.c,
	  lib/sse_su3dslash_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar_3d.c,
	  lib/sse_su3dslash_64bit_scalar.c,
	  lib/sse_su3dslash_64bit_scalar_3d.c, tests/t_dslash.cc,
	  tests/t_dslash_3d.cc, tests/testDslash3D.cc,
	  tests/testDslashFull.cc, tests/testvol.h, tests/timeDslash.cc,
	  tests/timeDslash3D.cc, tests/time_dslash.cc,
	  tests/time_dslash_3d.cc, tests/scripts/do_all.sh,
	  tests/scripts/test_all.sh, tests/scripts/test_all_3d.sh: Passes
	  many tests. Works entirely off site tables

2008-02-24 06:34  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: More stuff for
	  binary writers

2008-02-24 06:32  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: Use binary writers
	  to dump intermediate results.

2008-02-24 06:29  mcneile

	* lib/meas/hadron/: loops_s.h, ks_local_loops.cc, ks_local_loops.h:
	  Added binary write of intermediate results to reduce performance
	  problems with XML.

2008-02-19 16:11  edwards

	* lib/actions/ferm/fermstates/extfield_fermstate_w.cc: Removed old
	  comment and ifdef guard. No functional change.

2008-02-19 11:23  tag chroma3-28-3

2008-02-19 11:23  bjoo

	* configure: Induced Changes

2008-02-19 11:22  bjoo

	* configure.ac: Updated configure.ac to 3.28.3

2008-02-19 11:21  bjoo

	* lib/util/gauge/stout_utils.cc: Added decimal points to the corner
	  cases.

2008-02-19 10:19  tag chroma3-28-2

2008-02-19 10:19  bjoo

	* configure, configure.ac: Bumped version number and associated
	  changes

2008-02-19 10:00  bjoo

	* chroma-config.in, configure, configure.ac: Fixed Chroma config
	  maybe

2008-02-18 15:45  kostas

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h: patch up B field and shift E field

2008-02-17 07:09  mcneile

	* docs/readme_hisq: Some notes on the HISQ inverter.

2008-02-17 06:42  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: REmoved include file
	  that I use for debugging.

2008-02-16 11:51  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: This version of the
	  code has been successfully tested against Eduardo's HISQ
	  inverter.

	  Staggered phases suck. They are enough to drive one to drink or
	  into that nasty DWF business (m_res, L5, etc)

	  I sm still note sure that the antreperoiduc boundary conditions
	  are in correctly.

2008-02-16 11:21  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: This version has
	  debug hooks in it.

2008-02-09 14:33  edwards

	* tests/chroma/hadron_s/propagator/: klein_gordon.ini.xml,
	  klein_gordon.out.xml: Increased precision.

2008-02-06 13:55  edwards

	* lib/meas/inline/schrfun/inline_sfpcac_w.cc: Fixed name of XML
	  group in case xml_file is non-empty.

2008-02-04 14:23  kostas

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h: added linear electric field

2008-02-01 18:10  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  mainprogs/make_ops/make_ops.cc: More changes to i/o.

2008-02-01 12:01  tag chroma3-28-1

2008-02-01 12:01  edwards

	* aclocal.m4, configure: Induced changes

2008-02-01 12:01  edwards

	* NEWS: Info on 3.28.1.

2008-02-01 11:58  edwards

	* configure.ac: Changed to 3.28.1

2008-02-01 11:54  edwards

	* tests/chroma/smear/link_smear/link_smear.metric.xml: Removed
	  unused metric cases.

2008-01-31 09:55  edwards

	* tests/purgaug/: purgaug.2+2.ini.xml, purgaug.2+2.out.xml:
	  Updated.

2008-01-31 09:48  edwards

	* tests/chroma/: smear/link_smear/link_smear.out.xml,
	  eig/eigbnds.out.xml: Updated.

2008-01-31 09:45  edwards

	* tests/chroma/hadron/propagator/prec_wilson-smearing.out.xml:
	  Updated regression.

2008-01-30 23:36  edwards

	* tests/t_leapfrog/t_leapfrog.2+2_gaugeact.log.xml: Updated to new
	  input form.

2008-01-30 23:35  edwards

	* tests/t_leapfrog/t_leapfrog.2+2_gaugeact.ini.xml: Fixed input for
	  this type of gaugeact.

2008-01-30 23:31  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  mainprogs/make_ops/make_make_ops_input.pl,
	  mainprogs/make_ops/make_ops.cc: make_ops.cc runs. small changes
	  to inline_stoch code for timing.

2008-01-30 13:29  bjoo

	* lib/meas/inline/eig/: inline_eigbnds.cc, inline_eigbnds.h: Added
	  separate hi residua to eigenbounds parameters. Should be
	  backwards compatible

2008-01-30 02:24  kostas

	* lib/actions/ferm/invert/inv_eigcg2.cc: switched on the OLD
	  inv_eigCG ... seems to work... something is wrong with the new
	  one...

2008-01-29 18:09  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  mainprogs/make_ops/make_ops.cc: More work on make_ops.cc. Added
	  more info to elem. op. files.

2008-01-28 17:55  jbulava

	* lib/meas/hadron/dilution_quark_source_const_w.h,
	  lib/meas/hadron/dilution_scheme.h,
	  lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  mainprogs/make_ops/make_ops.cc: Added some more info to operator
	  lime files. More progress on make_ops.

2008-01-25 17:23  edwards

	* mainprogs/tests/t_stout_state.cc: Changed to use the stout_smear
	  within the lib/util/gauge/stout_utils group of functions.

2008-01-25 17:22  edwards

	* lib/: chroma_config_internal.h.in, util/gauge/gauge.h,
	  util/gauge/stout_utils.cc, util/gauge/stout_utils.h: Added a
	  stout_smear function to stout_utils that's just a wrapper over
	  the usual functions. This is to provide the single link
	  functionality to those main programs that seemed to want to test
	  use it.

2008-01-24 15:47  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  hadron/dilution_quark_source_const_w.h, hadron/dilution_scheme.h,
	  inline/hadron/inline_stoch_group_baryon_v3_w.cc,
	  inline/hadron/inline_stoch_group_baryon_v3_w.h,
	  inline/hadron/inline_stoch_group_baryon_w.cc: Included more
	  sanity checks.

2008-01-24 10:18  edwards

	* lib/actions/ferm/linop/: dslash_array_w.h, dslash_w.h,
	  lwldslash_array_sse_old_w.cc, lwldslash_array_sse_old_w.h,
	  lwldslash_w_sse_old.cc, lwldslash_w_sse_old.h: Removed the old
	  sse codes and switches.

2008-01-24 09:51  edwards

	* tests/chroma/smear/link_smear/: link_smear.ini.xml,
	  link_smear.out.xml: Removed OLD case. Regenerated output.

2008-01-24 09:50  edwards

	* lib/: Makefile.am, meas/smear/link_smearing_aggregate.cc,
	  meas/smear/smear.h, meas/smear/stout_link_smearing.cc,
	  meas/smear/stout_link_smearing.h,
	  meas/smear/stout_link_smearing_old.cc,
	  meas/smear/stout_link_smearing_old.h, meas/smear/stout_smear.cc,
	  meas/smear/stout_smear.h, meas/smear/stout_smear_old.cc,
	  meas/smear/stout_smear_old.h: Removed stout_smear* and
	  stout_link_smearing_old.* . The malfeature where the rho in
	  stout_smearing has a sign flip has been removed. The
	  stout_link_smearing now goes through the
	  lib/util/gauge/stout_utils  routines.

2008-01-23 17:25  edwards

	* mainprogs/: main/Makefile.am, tests/Makefile.am: Removed
	  intel_sse_old stuff.

2008-01-23 17:24  edwards

	* aclocal.m4, configure: Induced changes

2008-01-23 17:24  edwards

	* AUTHORS, COPYING: aclocal.m4

2008-01-23 17:19  edwards

	* configure.ac, lib/Makefile.am: Removed old intel_sse code and
	  options.

2008-01-23 14:04  bjoo

	* lib/meas/smear/stout_smear.cc: Took  - sign back out of  stout
	  smear

2008-01-23 13:23  bjoo

	* lib/update/molecdyn/monomial/: one_flavor_rat_monomial_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h: Monomial changes for temp
	  preconditioning

2008-01-23 10:44  edwards

	* tests/purgaug/regres.pl: Added wilson_coarse_fine_1loop test.

2008-01-23 10:43  edwards

	* tests/purgaug/: purgaug.2+2.1loop.ini.xml,
	  purgaug.2+2.1loop.metric.xml, purgaug.2+2.1loop.out.xml,
	  purgaug.2+2.ini.xml, purgaug.2+2.out.xml: Copied 2+2 to a 1-loop
	  version and changed the original to use general coefficients.

2008-01-23 10:41  edwards

	* lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc: Added
	  wilson_coarse_fine_1loop

2008-01-23 10:39  edwards

	* lib/actions/gauge/gaugeacts/wilson_coarse_fine_gaugeact.cc: Fix.

2008-01-23 10:36  edwards

	* lib/actions/gauge/gaugeacts/:
	  wilson_coarse_fine_1loop_gaugeact.cc,
	  wilson_coarse_fine_1loop_gaugeact.h,
	  wilson_coarse_fine_gaugeact.cc, wilson_coarse_fine_gaugeact.h:
	  Copied wilson_coarse_fine_gaugeact to a 1loop version and changed
	  the original to use general (non-pertubative) coefficients.

2008-01-23 10:35  edwards

	* lib/Makefile.am: Copy wilson_coarse_fine_gaugeact to a
	  wilson_coarse_fine_1loop_gaugeact and changed the original to use
	  geneneral (non-perturbative) coefficients.

2008-01-22 22:25  edwards

	* NEWS: Added missing info on 3.27.1

2008-01-22 16:23  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  inline/hadron/inline_stoch_group_baryon_w.cc: Fixed some run-time
	  errors.

2008-01-22 11:43  tag chroma3-28-0

2008-01-22 11:43  edwards

	* tests/chroma/hadron/propagator/: prec_wilson.2+2.ini.xml,
	  prec_wilson.2+2.out.xml: Updated a bit.

2008-01-22 11:33  edwards

	* NEWS: Info on 3.28.0

2008-01-22 10:51  edwards

	* tests/t_leapfrog/t_leapfrog.2+2_gaugeact.log.xml: Updated output.

2008-01-21 17:24  edwards

	* aclocal.m4, configure: Induced changes

2008-01-21 17:22  edwards

	* configure.ac: Change mpirun runner to a 6n_mpirun.

2008-01-21 17:21  edwards

	* scripts/test_runners/6n_mpirun_rsh_runner.sh.in: New 6n runner
	  (taken from 7n). Identical runner environment between 6n and 7n
	  now.

2008-01-21 16:45  edwards

	* tests/t_leapfrog/: regres.pl, t_leapfrog.2+2_gaugeact.ini.xml,
	  t_leapfrog.2+2_gaugeact.log.xml,
	  t_leapfrog.2+2_gaugeact.metric.xml,
	  t_leapfrog.plaq_cf_gaugeact.ini.xml,
	  t_leapfrog.plaq_cf_gaugeact.log.xml,
	  t_leapfrog.plaq_cf_gaugeact.metric.xml: Replaced with 2+2
	  gaugeact.

2008-01-21 15:41  edwards

	* lib/io/: aniso_io.cc, aniso_io.h: Added makeFermCoeffs to convert
	  AnisoParam to a multi1d<Real> suitable for weights in a Wilson
	  dslash.

2008-01-21 15:40  edwards

	* lib/Makefile.am: Added coarse fine wilson fermact support.

2008-01-21 15:30  edwards

	* aclocal.m4, configure: Induced changes

2008-01-21 15:30  edwards

	* configure.ac: Changed to 3.28.0

2008-01-21 15:29  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  hadron/dilution_quark_source_const_w.h, hadron/dilution_scheme.h,
	  inline/hadron/inline_stoch_group_baryon_w.cc: Included more
	  sanity checks. Also, inline_stoch_group_baryon runs and produces
	  output.

2008-01-21 15:18  edwards

	* lib/actions/ferm/:
	  fermacts/eoprec_wilson_coarse_fine_fermact_w.cc,
	  fermacts/eoprec_wilson_coarse_fine_fermact_w.h,
	  fermacts/fermacts_aggregate_w.cc,
	  fermacts/wilson_coarse_fine_fermact_params_w.cc,
	  fermacts/wilson_coarse_fine_fermact_params_w.h,
	  linop/clover_term_bagel_clover.cc,
	  linop/eoprec_wilson_linop_w.cc, linop/eoprec_wilson_linop_w.h,
	  linop/lwldslash_3d_qdp_w.cc, linop/lwldslash_3d_qdp_w.h,
	  linop/lwldslash_3d_sse_w.cc, linop/lwldslash_3d_sse_w.h,
	  linop/lwldslash_array_pab_w.cc, linop/lwldslash_array_pab_w.h,
	  linop/lwldslash_array_qdpopt_w.cc,
	  linop/lwldslash_array_qdpopt_w.h,
	  linop/lwldslash_array_sse_old_w.h,
	  linop/lwldslash_array_sse_w.cc, linop/lwldslash_array_sse_w.h,
	  linop/lwldslash_array_w.cc, linop/lwldslash_array_w.h,
	  linop/lwldslash_base_3d_w.cc, linop/lwldslash_base_3d_w.h,
	  linop/lwldslash_base_array_w.cc, linop/lwldslash_base_array_w.h,
	  linop/lwldslash_base_w.cc, linop/lwldslash_base_w.h,
	  linop/lwldslash_qdpopt_w.cc, linop/lwldslash_qdpopt_w.h,
	  linop/lwldslash_w.cc, linop/lwldslash_w.h,
	  linop/lwldslash_w_pab.cc, linop/lwldslash_w_pab.h,
	  linop/lwldslash_w_sse.cc, linop/lwldslash_w_sse.h,
	  linop/lwldslash_w_sse_old.h: Changed internal storage of
	  AnisoParam struct to a simple multi1d<Real> in all the
	  WilsonDslash classes. The point is now there is a general
	  reweighting of each derivative term in the dirac ops. That means
	  all the base class and derived types now return this coeff.
	  array. This actually simplifies the derivatives and other
	  constructs like reweighting of the gauge fields. They now assume
	  there is always some weight.	Also added a 2+2 (coarse-fine)
	  Wilson fermact ala TrinLat. That was the reason for the change,
	  but actually the rearrangement is a general improvement.

2008-01-21 14:57  edwards

	* tests/chroma/hadron/propagator/: prec_dwf.eigcg.out.xml,
	  prec_wilson.2+2.ini.xml, prec_wilson.2+2.metric.xml,
	  prec_wilson.2+2.out.xml, regres.pl: Wilson coarse-fine.

2008-01-20 14:47  edwards

	* lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h:
	  Added, but commented out a "write" for the params. This doesn't
	  work at the moment - no multi2d xml write in qdp++.

2008-01-20 14:46  edwards

	* lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc,
	  wilson_coarse_fine_gaugeact.cc, wilson_coarse_fine_gaugeact.h:
	  Added coarse-fine wilson plaquette gauge action suitable for 2+2
	  anisotropy.

2008-01-20 14:46  edwards

	* tests/purgaug/: purgaug.2+2.ini.xml, purgaug.2+2.metric.xml,
	  purgaug.2+2.out.xml, regres.pl: New 2+2 gaugeact.

2008-01-20 12:46  edwards

	* mainprogs/main/purgaug.cc: Generalized to LinearGaugeAction
	  instead of just a WilsonGaugeAct.

2008-01-20 12:45  edwards

	* lib/update/heatbath/: mciter.cc, mciter.h: Generalized gauge
	  actions to just LinearGaugeAction.

2008-01-20 12:44  edwards

	* lib/: actions/gauge/gaugeacts/gaugeacts_aggregate.cc,
	  actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.cc,
	  actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.h, Makefile.am:
	  Removed coarse_fine gaugeact.

2008-01-20 12:42  edwards

	* lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h:
	  Changed to more general coefficient setup. No longer specific to
	  just 3+1 aniso. Now can support any coefficients, but do allow
	  old style constructors for convenience.

2008-01-20 12:40  edwards

	* tests/purgaug/purgaug.out.xml: Uses new style purgaug action
	  setup.

2008-01-20 11:11  edwards

	* lib/actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.cc: Pull
	  out some temporaries.

2008-01-19 22:07  edwards

	* lib/meas/smear/: link_smearing_aggregate.cc,
	  stout_link_smearing_old.cc, stout_link_smearing_old.h,
	  stout_smear_old.cc, stout_smear_old.h: Added in
	  stout_link_smearing_old - the old buggy version for backwards
	  compatibility.

2008-01-19 22:06  edwards

	* lib/Makefile.am: Added stout_link_smearing_old and
	  stout_smearing_old - the old buggy versions for backwards
	  compatibility.

2008-01-19 22:03  edwards

	* tests/chroma/smear/link_smear/: link_smear.ini.xml,
	  link_smear.metric.xml, link_smear.out.xml: Added
	  stout_link_smearing_old.

2008-01-19 16:21  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have
	  removed all the nasty printf statements I now use the double
	  precision version of the level 3 library. This makes a big
	  difference to restarts and things (as might be expected).

2008-01-19 16:18  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: Fixed restart
	  parameter.

2008-01-18 21:10  jbulava

	* lib/: Makefile.am, meas/hadron/dilution_quark_source_const_w.cc,
	  meas/hadron/dilution_quark_source_const_w.h,
	  meas/hadron/dilution_scheme_aggregate.cc,
	  meas/inline/hadron/inline_stoch_group_baryon_w.cc: Factory
	  registration issues in inline_stoch_group_baryon_w are ironed out

2008-01-18 13:50  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  hadron/dilution_scheme_aggregate.cc,
	  inline/hadron/inline_stoch_group_baryon_w.cc: [no log message]

2008-01-18 11:43  jbulava

	* lib/Makefile.am, lib/meas/hadron/dilution_scheme.h,
	  lib/meas/hadron/dilution_scheme_aggregate.cc,
	  lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc,
	  lib/meas/inline/hadron/inline_stoch_group_baryon_w.h,
	  mainprogs/make_ops/make_ops.cc: Fixed dilution stuff and
	  inline_stoch_group_baryon. Everything now compiles on my machine.

2008-01-17 16:49  jbulava

	* lib/meas/hadron/: dilution_operator.h,
	  dilution_operator_aggregate.cc, dilution_operator_aggregate.h,
	  dilution_operator_factory.h, dilution_quark_source_const_w.h,
	  dilution_scheme.h: [no log message]

2008-01-17 10:09  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  inline/hadron/inline_stoch_group_baryon_w.cc,
	  inline/hadron/inline_stoch_group_baryon_w.h: [no log message]

2008-01-16 15:12  edwards

	* mainprogs/main/purgaug.cc: Put in more catch-es.

2008-01-16 15:05  edwards

	* tests/t_leapfrog/regres.pl: Added plaq_cf_gaugeact.

2008-01-16 15:02  edwards

	* tests/t_leapfrog/: t_leapfrog.plaq_cf_gaugeact.ini.xml,
	  t_leapfrog.plaq_cf_gaugeact.log.xml,
	  t_leapfrog.plaq_cf_gaugeact.metric.xml: Coarse-fine plaquette
	  leapfrog test.

2008-01-16 14:11  edwards

	* lib/actions/gauge/gaugeacts/plaq_coarse_fine_gaugeact.cc: Added
	  missing read of coarseP.

2008-01-16 14:03  edwards

	* lib/actions/ferm/invert/inv_eigcg2_array.cc: Fixed a resize.

2008-01-16 14:02  edwards

	* lib/Makefile.am: Added plaq_coarse_fine_gaugeact. Also rearranged
	  some of the CXXFLAGS and the like.

2008-01-16 14:01  edwards

	* lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc,
	  plaq_coarse_fine_gaugeact.cc, plaq_coarse_fine_gaugeact.h: A new
	  2+2 style plaquette gaugeact.

2008-01-15 15:40  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: [no log
	  message]

2008-01-15 14:39  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  inline/hadron/inline_stoch_group_baryon_v3_w.cc: Added Diquark
	  construction for source.

2008-01-14 17:12  kostas

	* lib/meas/hadron/delta_2pt_w.cc: fixed final bugs..

2008-01-14 16:56  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: Sources
	  and sink calculated independently to same memory.

2008-01-13 17:59  edwards

	* lib/actions/ferm/invert/syssolver_linop_eigcg_array.h: Fixed
	  size-ing.

2008-01-13 17:55  edwards

	* lib/actions/ferm/invert/: containers.h,
	  syssolver_linop_eigcg_array.h: Fixed initialization.

2008-01-13 17:51  edwards

	* tests/chroma/hadron/propagator/: prec_dwf.eigcg.ini.xml,
	  prec_dwf.eigcg.metric.xml, prec_dwf.eigcg.out.xml: Start of eigcg
	  for dwf.

2008-01-13 17:44  edwards

	* lib/Makefile.am: Added eigcg_array versions of inv_eigcg2.

2008-01-13 17:43  edwards

	* lib/actions/ferm/invert/: inv_eigcg2_array.cc,
	  syssolver_linop_aggregate.cc, syssolver_linop_eigcg_array.cc,
	  syssolver_linop_eigcg_array.h: More fixes. Now compiles and
	  links.

2008-01-13 16:08  edwards

	* lib/actions/ferm/invert/: containers.h, inv_eigcg2_array.cc,
	  inv_eigcg2_array.h, norm_gram_schm.cc, norm_gram_schm.h,
	  syssolver_linop_eigcg_array.cc, syssolver_linop_eigcg_array.h:
	  Extended to support 5D style arrays.

2008-01-13 15:59  edwards

	* lib/actions/ferm/invert/inv_eigcg2.cc: Added a doxygen comment.

2008-01-13 13:49  edwards

	* tests/regres.pl: Commented back out the temporary regression
	  override.

2008-01-11 13:14  kostas

	* lib/meas/hadron/: barspinmat_w.cc, barspinmat_w.h,
	  delta_2pt_w.cc: fixed bugs and sings...

2008-01-11 10:36  kostas

	* lib/meas/hadron/dilution_quark_source_const_w.h: fixed typo
	  (time_slices converted to timeslices)

2008-01-10 17:56  jbulava

	* lib/meas/: hadron/dilution_quark_source_const_w.cc,
	  hadron/dilution_quark_source_const_w.h,
	  inline/hadron/inline_stoch_group_baryon_v3_w.cc: [no log message]

2008-01-10 09:33  bjoo

	* mainprogs/main/hmc.cc: Fixed missing StopWatch declaration in
	  hmc.cc

2008-01-09 16:15  jbulava

	* lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc:
	  Finished source operator construction

2008-01-09 14:05  bjoo

	* lib/central_tprec_linop.h,
	  lib/actions/ferm/linop/central_tprec_nospin_utils.h,
	  lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilsonlike_linop_w.h,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h,
	  mainprogs/tests/t_temp_prec.cc, tests/regres.pl: Updated a bunch
	  of temp prec stuff

2008-01-09 14:03  bjoo

	* tests/t_leapfrog/: regres.tprec.pl,
	  t_leapfrog.iluprec_s_cprec_t_clover.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_logdetTT.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_logdetTT.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_aniso_apbc.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_aniso_apbc.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_schr1link.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_logdetTT_schr1link.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_schr1link.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_schr1link.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_schr2link.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_clover_schr2link.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_aniso_apbc.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_aniso_apbc.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_schr1link.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_logdetTT_schr1link.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_schr1link.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_schr1link.log.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_schr2link.ini.xml,
	  t_leapfrog.iluprec_s_cprec_t_wilson_schr2link.log.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson.ini.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson.log.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson.metric.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT.ini.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT.log.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT.metric.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_aniso_apbc.ini.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_aniso_apbc.log.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_aniso_apbc.metric.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_schr1link.ini.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_schr1link.log.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_logdetTT_schr1link.metric.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_schr1link.ini.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_schr1link.log.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_schr2link.ini.xml,
	  t_leapfrog.unprec_s_cprec_t_wilson_schr2link.log.xml: Test Files
	  for TempPrec Fermions

2008-01-09 13:49  edwards

	* mainprogs/main/hmc.cc: Added measurement of total time of HMC.

2008-01-08 14:06  jbulava

	* lib/meas/hadron/dilution_quark_source_const_w.h: Changed
	  "dliution_operator" naming convention to "dilution_scheme"

2008-01-08 13:59  jbulava

	* lib/meas/inline/hadron/: inline_stoch_group_baryon_v3_w.cc,
	  inline_stoch_group_baryon_v3_w.h, inline_stoch_group_baryon_w.cc,
	  inline_stoch_group_baryon_w.h: [no log message]

2008-01-08 12:52  bjoo

	* tests/chroma/hadron/propagator/:
	  iluprec_s_cprec_t_clover_schr1link.ini.xml,
	  iluprec_s_cprec_t_clover_schr1link.metric.xml,
	  iluprec_s_cprec_t_clover_schr1link.out.xml,
	  iluprec_s_cprec_t_clover_schr2link.ini.xml,
	  iluprec_s_cprec_t_clover_schr2link.metric.xml,
	  iluprec_s_cprec_t_clover_schr2link.out.xml,
	  iluprec_s_cprec_t_clover_schr2link_space.ini.xml,
	  iluprec_s_cprec_t_clover_schr2link_space.metric.xml,
	  iluprec_s_cprec_t_clover_schr2link_space.out.xml,
	  iluprec_s_cprec_t_wilson_schr1link.ini.xml,
	  iluprec_s_cprec_t_wilson_schr1link.metric.xml,
	  iluprec_s_cprec_t_wilson_schr1link.out.xml,
	  iluprec_s_cprec_t_wilson_schr2link.ini.xml,
	  iluprec_s_cprec_t_wilson_schr2link.metric.xml,
	  iluprec_s_cprec_t_wilson_schr2link.out.xml,
	  iluprec_s_cprec_t_wilson_schr2link_space.ini.xml,
	  iluprec_s_cprec_t_wilson_schr2link_space.metric.xml,
	  iluprec_s_cprec_t_wilson_schr2link_space.out.xml,
	  regres.tprec.pl, unprec_s_cprec_t_wilson_schr1link.ini.xml,
	  unprec_s_cprec_t_wilson_schr1link.metric.xml,
	  unprec_s_cprec_t_wilson_schr1link.out.xml,
	  unprec_s_cprec_t_wilson_schr2link.ini.xml,
	  unprec_s_cprec_t_wilson_schr2link.metric.xml,
	  unprec_s_cprec_t_wilson_schr2link.out.xml,
	  unprec_s_cprec_t_wilson_schr2link_space.ini.xml,
	  unprec_s_cprec_t_wilson_schr2link_space.metric.xml,
	  unprec_s_cprec_t_wilson_schr2link_space.out.xml: Regressions for
	  various boundary conditions on temp prec actions

2008-01-07 11:00  jbulava

	* lib/meas/hadron/dilution_quark_source_const_w.cc: [no log
	  message]

2008-01-07 10:19  jbulava

	* lib/meas/hadron/: dilution_quark_source_const_w.cc,
	  dilution_quark_source_const_w.h, dilution_scheme.h,
	  dilution_scheme_aggregate.cc, dilution_scheme_aggregate.h,
	  dilution_scheme_factory.h: [no log message]

2008-01-06 10:15  mcneile

	* lib/meas/gfix/polar_dec.cc: I have now testes the reconstruction
	  of the matrix outside this function. I had flip the order of the
	  eigenvectors for the hermitian matrix.

	  Reconstruction now works.

2008-01-06 06:19  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: I have cleaned this
	  code. It is still not reproducing Eduardo's numbers.

2008-01-06 06:13  mcneile

	* lib/actions/ferm/fermacts/hisq_fermact_s.cc: This still doesn't
	  work, but I have fixed a number of bugs problems.

2008-01-06 06:02  mcneile

	* lib/meas/gfix/polar_dec.cc: There was a bug in this routine.

	  The eigenvalue routines actually produced.

	  A = U^dagger lambda U

	  (where lambda are the eigenvalues) but the buggy code assumed

	  A = U lambda U^dagger

	    v_tmp = v * adj(w_tmp);
	    v = w_tmp * v_tmp - u_tmp;

	  The very useful diagnostic code flagged this up
	  polar_dec::diff_sq 0.0498710271949223 polar_dec::unit_test
	  0.564576648622344

	  The two modifications now produce:

	  polar_dec::diff_sq 5.42859407009672e-14 polar_dec::unit_test
	  3.64462955648059e-13

	  Also the new version of the code produces a more gauge invariant
	  pion correlator from the HISQ action.

2008-01-04 10:09  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have hacked this code as
	  starting point to DEBUG the hisq code.

2008-01-04 07:56  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have added
	  an option to restart. Also print out the final residual rescaled
	  by the norm of the source.  Ths is needed for noise inversions
	  where the norm of the source is large.

2008-01-04 07:09  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: I have added a
	  restart parameter to the input file.

2008-01-03 15:06  bjoo

	* lib/: Makefile.am,
	  actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc,
	  actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h,
	  actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc,
	  actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h,
	  actions/ferm/linop/iluprec_s_cprec_t_wilsonlike_linop_w.h:
	  Refactored to a base class in the ILU Prec case.

2008-01-02 12:05  bjoo

	* lib/: central_tprec_linop.h,
	  actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc,
	  actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h,
	  actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc,
	  actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h: Added
	  force terms for ILUPrec WIlson and Clover. Both seem to conserve
	  energy. Need more thorough testing

2008-01-01 18:09  edwards

	* tests/chroma/hadron/propagator/: unprec_graphene.ini.xml,
	  unprec_graphene.out.xml: New output.

2008-01-01 17:59  edwards

	* tests/t_leapfrog/: t_leapfrog.unprec_graphene.ini.xml,
	  t_leapfrog.unprec_graphene.log.xml: Fixed up output. The dH seems
	  to scale correctly with step size.

2008-01-01 17:49  edwards

	* tests/chroma/hadron/propagator/: unprec_graphene.ini.xml,
	  unprec_graphene.out.xml: Fixed output.

2008-01-01 17:45  edwards

	* lib/actions/ferm/linop/unprec_graphene_linop_w.cc: Put in missing
	  mass.

2008-01-01 17:38  edwards

	* lib/actions/ferm/linop/unprec_graphene_linop_w.cc: Put in isign
	  into the operator().

2008-01-01 17:19  edwards

	* tests/: chroma/hadron/propagator/unprec_graphene.out.xml,
	  t_leapfrog/t_leapfrog.unprec_graphene.ini.xml,
	  t_leapfrog/t_leapfrog.unprec_graphene.log.xml,
	  t_leapfrog/t_leapfrog.unprec_graphene.metric.xml: Test input.

2008-01-01 17:13  edwards

	* lib/actions/ferm/linop/: unprec_graphene_linop_w.cc,
	  unprec_graphene_linop_w.h: Added derivative.

2007-12-31 18:24  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  fermacts/unprec_graphene_fermact_w.cc,
	  fermacts/unprec_graphene_fermact_w.h,
	  linop/unprec_graphene_linop_w.cc,
	  linop/unprec_graphene_linop_w.h: Added graphene fermact and
	  linop.

2007-12-31 18:23  edwards

	* lib/Makefile.am: Added graphene operator.

2007-12-31 18:23  edwards

	* tests/chroma/hadron/propagator/: regres.pl,
	  unprec_graphene.ini.xml, unprec_graphene.metric.xml,
	  unprec_graphene.out.xml: New graphene operator.

2007-12-18 16:06  bjoo

	* lib/central_tprec_linop.h,
	  lib/actions/ferm/linop/lwldslash_3d_sse_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_3d_w.cc,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h,
	  tests/regres.pl: Unprec Space Tprec Time HMC terms now coded and
	  conserve energy. Need Physics Testing -- and potentially double
	  precision

2007-12-18 08:50  edwards

	* lib/Makefile.am: Added dilution routines.

2007-12-18 08:40  edwards

	* lib/meas/hadron/: dilution_operator_aggregate.cc,
	  dilution_quark_source_const_w.cc,
	  dilution_quark_source_const_w.h: Closer to compiling.

2007-12-18 07:43  edwards

	* lib/meas/hadron/: dilution_operator.h,
	  dilution_quark_source_const_w.h: More changes in interface. Now
	  only deals with const_iterators.  The intent is that only
	  LatticeFermions (or rather the template type "T") is served from
	  this class. The stoch_group_baryon code at some point needs
	  LatticeColorVector-s, but the dilution object itself only needs
	  to deal with LatticeFermions.

2007-12-17 22:35  edwards

	*
	  tests/chroma/hadron/stoch_group_baryon/stoch_group_baryon.new.ini.xml:
	  New sample input file. This should go, eventually.

2007-12-17 17:44  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc: Closer
	  to the real thing.

2007-12-17 17:29  kostas

	* lib/actions/ferm/invert/inv_eigcg2.cc: started the optimized
	  restart_x

2007-12-17 14:33  kostas

	* other_libs/qdp-lapack/: include/fortran_lapack.h,
	  include/qdp-lapack.h, lib/fortran_lapack.cc: Included more LAPACK
	  and BLAS interfaces needed for imporved eigCG I need Robert's
	  confirmation that what I did with cgemm for LatticeFermion is OK

2007-12-16 06:54  mcneile

	* docs/readme_level3_staggered: Added documentation for some of the
	  stupid things I have done.  Why not rewrite/refactor???

2007-12-16 06:43  mcneile

	* docs/readme_level3_staggered: I have added more information.

2007-12-15 00:11  kostas

	* lib/actions/ferm/invert/inv_eigcg2.cc: fixed slitghtly optimized
	  eigCG`

2007-12-14 18:41  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_v3_w.cc:
	  Figuring out what's really needed.

2007-12-14 16:47  kostas

	* lib/meas/hadron/delta_2pt_w.cc: [no log message]

2007-12-14 16:41  kostas

	* lib/meas/hadron/delta_2pt_w.cc: modified the spin averaged
	  projector

2007-12-14 01:53  edwards

	* lib/meas/: hadron/dilution_operator.h,
	  hadron/dilution_operator_aggregate.cc,
	  hadron/dilution_operator_aggregate.h,
	  hadron/dilution_operator_factory.h,
	  hadron/dilution_quark_source_const_w.cc,
	  hadron/dilution_quark_source_const_w.h,
	  inline/hadron/inline_stoch_group_baryon_v3_w.cc,
	  inline/hadron/inline_stoch_group_baryon_v3_w.h: First version of
	  generic dilution operators on sources. The inline
	  stoch_group_baryon code is now (trying) to use just these
	  abstract dilution operators.

2007-12-14 00:03  kostas

	* lib/actions/ferm/invert/inv_eigcg2.cc: changed eigcg to avoid
	  some flops and make it more elegant. Needs work but it runs

2007-12-13 08:22  bjoo

	* lib/central_tprec_fermact_w.h: A collective fermact for centrally
	  time preconditioned operators

2007-12-12 16:42  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/central_tprec_linop.h,
	  lib/eo3dprec_s_cprec_t_wilstype_fermact_w.h,
	  lib/iluprec_s_cprec_t_wilstype_fermact_w.h,
	  lib/unprec_s_cprec_t_wilstype_fermact_w.h,
	  lib/wilstype_fermact_w.h,
	  lib/actions/ferm/linop/central_tprec_nospin_utils.h,
	  lib/actions/ferm/linop/eo3dprec_s_cprec_t_clover_linop_w.h,
	  lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h,
	  lib/update/molecdyn/monomial/central_tprec_logdet_tt_monomial_w.cc,
	  lib/update/molecdyn/monomial/central_tprec_logdet_tt_monomial_w.h,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.cc,
	  tests/regres.pl, tests/chroma/hadron/propagator/regres.tprec.pl,
	  tests/t_leapfrog/t_leapfrog.central_tprec_logdet_tt.ini.xml:
	  Added LogDet Monomial for temp prec pieces. Seems to work too,
	  but beware underflows when T is large

2007-12-11 17:59  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: Cleaned up
	  the code a litle bit.  Thjis now works on the QCDOC hurray,
	  finaly, at last.  Need to clean up the code more. There is a
	  hidden factor of 2 that needs to be made more explicit.

2007-12-08 12:52  mcneile

	* configure.ac: Fixed a problem

2007-12-08 09:23  mcneile

	* configure.ac: Sub the directory name for level 3 libraries.

2007-12-08 08:42  mcneile

	* docs/readme_level3_staggered: I have added additional material

2007-12-08 07:13  mcneile

	* docs/readme_level3_staggered: Some notes on calling the level3
	  asqtad inverters.

2007-12-08 06:37  mcneile

	* mainprogs/main/Makefile.am: Added hooks for level3 asqtad
	  libraries.

2007-12-08 06:31  mcneile

	* mainprogs/main/spectrum_s.cc: Added some calls to start the
	  level3 code.

2007-12-08 06:26  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h: Added linear
	  operator so that we can compute the residual with the pure chroma
	  code.

2007-12-08 06:22  mcneile

	* configure.ac: I have removed the CPS hooks

2007-12-08 06:19  mcneile

	* configure.ac: I have added the hooks for the level3 code

2007-12-08 05:47  mcneile

	* lib/Makefile.am: Included flags for level 3 libraries

2007-12-06 13:46  jbulava

	* mainprogs/make_ops/: Makefile, make_make_ops_input.pl,
	  make_ops.cc: [no log message]

2007-12-06 13:31  jbulava

	* lib/meas/: inline/hadron/inline_stoch_group_baryon_w.cc,
	  smear/stout_smear.cc: [no log message]

2007-12-06 12:07  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: This version
	  works on a PC, but is a bit ugky.

2007-12-06 00:16  kostas

	* tests/chroma/hadron/hadron_contract/delta_2pt/delta_2pt.out.xml:
	  new xml output

2007-12-06 00:12  kostas

	* lib/meas/hadron/delta_2pt_w.cc: added spin averaged correlator
	  for the delta

2007-12-04 23:57  kostas

	* lib/Makefile.am: Makefiles were overwritten so delta_2pt was not
	  included in the library.  Added delta_2pt back into the mix...
	  now the code compiles and links again...

2007-12-04 23:49  kostas

	* aclocal.m4, configure: [no log message]

2007-12-04 23:46  kostas

	* lib/meas/hadron/: barspinmat_w.cc, barspinmat_w.h,
	  delta_2pt_w.cc: delta_2pt is now doing the delta.... needs checks
	  for correctness though

2007-12-04 23:44  kostas

	* tests/chroma/hadron/hadron_contract/delta_2pt/:
	  delta_2pt.ini.xml, delta_2pt.out.xml: delta_2pt sample ini.xml
	  out.xml files :
	  ----------------------------------------------------------------------

2007-12-04 15:37  mcneile

	* lib/actions/ferm/qprop/: asqtad_cps_wrapper_qprop.cc,
	  asqtad_cps_wrapper_qprop.h: Slight update. I can get the fat
	  links into this routine.

2007-12-04 11:24  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.h:
	  Integrated 3d Dslash, into Temp Prec ops, and now use assembler
	  3D dslash for SSE

2007-12-04 11:04  bjoo

	* lib/actions/ferm/linop/: dslash_w.h,
	  eo3dprec_s_cprec_t_clover_linop_w.cc,
	  eo3dprec_s_cprec_t_clover_linop_w.h,
	  eo3dprec_s_cprec_t_wilson_linop_w.cc,
	  eo3dprec_s_cprec_t_wilson_linop_w.h,
	  iluprec_s_cprec_t_clover_linop_w.cc,
	  iluprec_s_cprec_t_clover_linop_w.h,
	  iluprec_s_cprec_t_wilson_linop_w.cc,
	  iluprec_s_cprec_t_wilson_linop_w.h, lwldslash_3d_qdp_w.cc,
	  lwldslash_3d_qdp_w.h, lwldslash_3d_sse_w.cc,
	  lwldslash_3d_sse_w.h, lwldslash_base_3d_w.cc,
	  lwldslash_base_3d_w.h, unprec_s_cprec_t_wilson_linop_w.cc,
	  unprec_s_cprec_t_wilson_linop_w.h: Added 3D Dslash base class,
	  QDP version and SSE version, plus magic in dslash_w.h

2007-12-03 23:08  kostas

	* lib/: Makefile.am, meas/hadron/delta_2pt_w.cc,
	  meas/hadron/delta_2pt_w.h,
	  meas/hadron/hadron_contract_aggregate.cc: added hadron contract
	  for decuplet 2pt functions

2007-12-03 21:59  kostas

	* lib/meas/hadron/simple_baryon_2pt_w.cc: added some bits of code
	  for non-diagonal baryons

2007-12-03 11:36  bjoo

	* other_libs/sse_wilson_dslash/lib/: recons_64bit_parscalar.c,
	  sse_su3dslash_64bit_parscalar.c,
	  sse_su3dslash_64bit_parscalar_3d.c: Removed static loopcounters
	  and made them non-static

2007-11-30 01:38  kostas

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h, barspinmat_w.cc,
	  barspinmat_w.h: added off diagonal Delta's and new spin
	  matrices... need to add a couple of more projectors

2007-11-30 01:04  kostas

	* lib/meas/hadron/simple_baryon_2pt_w.h: added mixed Delta

2007-11-30 00:09  kostas

	* tests/chroma/hadron/npr/npr_vertex.out.xml: fixed test output

2007-11-30 00:06  kostas

	* lib/meas/hadron/npr_vertex_w.cc: fixed final bug... the code now
	  works (passes free field tests for one derivative ops)

2007-11-29 10:11  tag chroma3-27-1

2007-11-29 10:11  bjoo

	* tests/t_leapfrog/: t_leapfrog.prec_slrc.log.xml,
	  t_leapfrog.prec_slrc.sfnonpt.log.xml: SLRC Fixed tests

2007-11-29 09:19  bjoo

	* lib/actions/ferm/linop/eoprec_slrc_linop_w.cc: OK Did Cross
	  Checks with SF too for the SLRC

2007-11-28 23:13  kostas

	* lib/meas/inline/hadron/inline_npr_vertex_w.cc,
	  lib/meas/sources/mom_source_const.cc,
	  lib/meas/sources/mom_source_const.h,
	  tests/chroma/hadron/npr/npr.ini.xml,
	  tests/chroma/hadron/npr/npr.out.xml,
	  tests/chroma/hadron/npr/npr_vertex.ini.xml,
	  tests/chroma/hadron/npr/npr_vertex.out.xml: fixed up vertex npr
	  to not do momentum averaging

2007-11-28 17:09  bjoo

	* lib/actions/ferm/: fermacts/eoprec_slrc_fermact_w.h,
	  linop/eoprec_slrc_linop_w.cc, linop/eoprec_slrc_linop_w.h: OK

2007-11-28 16:11  bjoo

	* lib/actions/ferm/fermstates/stout_fermstate_w.h: Put a little
	  fix. MD looks ok for scalar

2007-11-28 15:50  bjoo

	* lib/actions/ferm/: fermstates/stout_fermstate_w.h,
	  linop/eoprec_slrc_linop_w.cc: Changed the fermstates *

2007-11-28 14:50  bjoo

	* lib/actions/ferm/linop/: eoprec_slrc_linop_w.cc,
	  eoprec_slrc_linop_w.h: Foo

2007-11-28 12:39  bjoo

	* lib/actions/ferm/linop/eoprec_slrc_linop_w.cc: Added force
	  monitoring

2007-11-28 12:13  kostas

	* lib/meas/inline/hadron/inline_npr_vertex_w.cc: fixed back in
	  fourier transform of quark propagator

2007-11-27 23:05  kostas

	* lib/meas/inline/hadron/: inline_npr_vertex_w.cc,
	  inline_npr_vertex_w.h: npr_vertex now writes out the fourier
	  transformed propagator

2007-11-27 23:04  kostas

	* tests/chroma/hadron/npr/: npr_vertex.ini.xml, npr_vertex.out.xml:
	  New npr_vertex input file

2007-11-27 18:01  kostas

	* lib/io/: qprop_io.cc, qprop_io.h: added mometume extraction from
	  source header

2007-11-21 11:22  bjoo

	* other_libs/sse_wilson_dslash/: NEWS,
	  lib/sse_su3dslash_32bit_parscalar.c: Cleanup

2007-11-21 10:44  bjoo

	* other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_scalar.c:
	  Made scalar faster too

2007-11-21 09:48  bjoo

	* other_libs/sse_wilson_dslash/lib/: decomp_32bit_parscalar.c,
	  sse_su3dslash_32bit_parscalar.c: Prefetch attempts

2007-11-20 10:26  bjoo

	* other_libs/sse_wilson_dslash/: lib/Makefile.am,
	  lib/sse_su3dslash_32bit_parscalar.c, tests/testDslashFull.cc: No
	  more padding, simplified loops on parscalar single

2007-11-19 17:04  bjoo

	* other_libs/sse_wilson_dslash/: lib/decomp_32bit_parscalar.c,
	  lib/decomp_hvv_32bit_parscalar.c, lib/recons_32bit_parscalar.c,
	  tests/testRecons32bit.cc: Added in spinor swizzling streamlining

2007-11-19 12:09  edwards

	* scripts/collect_regres_reports.pl: Collect regression reports.

2007-11-16 17:27  kostas

	* aclocal.m4, configure,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_npr_w.cc,
	  lib/meas/inline/hadron/inline_npr_w.h,
	  lib/meas/sources/mom_source_const.cc,
	  lib/meas/sources/mom_source_const.h: Linked in the NPR task and
	  modified the volume_momentum source to be able to take an offeset
	  as an input

2007-11-16 17:22  kostas

	* tests/chroma/hadron/npr/: npr.ini.xml, npr.out.xml,
	  npr_vertex.ini.xml, npr_vertex.out.xml: added NPR xml input and
	  output

2007-11-15 10:08  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have
	  restored the state method of getting the configurations.

2007-11-15 08:48  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: Still not
	  fully working. Need to fix some problems with the gauge
	  configurations.

2007-11-14 11:02  bjoo

	* tests/chroma/: hadron/propagator/prec_wilson-smearing.out.xml,
	  smear/link_smear/link_smear.out.xml: Updated output files to do
	  with link smearing

2007-11-13 21:06  bjoo

	* lib/meas/smear/stout_smear.cc: Ooops

2007-11-13 16:10  bjoo

	* lib/meas/smear/stout_smear.cc: Added a minus sign into the stout
	  smear to account for John Bs problem

2007-11-12 15:06  bjoo

	* other_libs/sse_wilson_dslash/lib/: decomp_32bit_parscalar.c,
	  decomp_hvv_32bit_parscalar.c, mvv_recons_32bit_parscalar.c:
	  Renamed xmm registers. Went back to load high and load low things
	  until I figure out the shufs

2007-11-12 10:17  tag chroma3-27-0

2007-11-12 10:17  edwards

	* aclocal.m4, configure: Induced changes

2007-11-12 10:17  edwards

	* NEWS: More info on 3.27.0

2007-11-12 10:17  edwards

	* configure.ac: Changed to 3.27.0

2007-11-12 10:16  edwards

	* scripts/regres_report_to_html.xsl: Small rearrangements in
	  header.

2007-11-12 10:15  edwards

	* INSTALL, NEWS, README: New info.

2007-11-11 14:09  kostas

	* lib/actions/ferm/linop/: lwldslash_array_qdpopt_w.cc,
	  lwldslash_array_w.cc, lwldslash_qdpopt_w.cc, lwldslash_w.cc:
	  added preprocessor "if's" so that the code can compile with NC!=3
	  and break at run time when dslashes are used with NC!=3

2007-11-11 11:27  mcneile

	* lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc: I have
	  cleaned up this routine.

2007-11-11 09:53  kostas

	* lib/meas/hadron/barQll_w.cc: made it so that it fails for Nc!=3
	  and Ns!=4

2007-11-11 09:52  mcneile

	* lib/actions/ferm/qprop/: asqtad_cps_wrapper_qprop.cc,
	  asqtad_cps_wrapper_qprop.h: This is n almost working version of
	  interface to qopop level3 inverters.	Needs more work on
	  packaging.

2007-11-11 09:48  kostas

	* lib/meas/hadron/barQll_w.cc: fixed it so that it compiles for
	  NC!=3

2007-11-10 16:33  edwards

	* tests/chroma/hadron/gauge_transf/regres.pl: Fixed paths.

2007-11-09 17:03  edwards

	* lib/io/qprop_io.cc: Pushed gauge_header read for the Config_info
	  group into its own reader. Now, a default (empty) group is
	  supplied for Config_info if it is not present.

2007-11-09 16:28  edwards

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: New reader/write for RitzPairs object.

2007-11-09 16:27  edwards

	* lib/meas/inline/io/inline_gaussian_obj.cc: Added more cases for
	  gaussian initialization.

2007-11-09 16:26  edwards

	* lib/meas/inline/hadron/: inline_gauge_transf_obj.cc,
	  inline_gauge_transf_obj.h, inline_hadron_aggregate.cc: Added
	  inline_gauge_transf.

2007-11-09 16:26  edwards

	* lib/meas/inline/glue/: inline_glue_aggregate.cc,
	  inline_random_transf_gauge.cc, inline_random_transf_gauge.h:
	  Added inline_random_transf_gauge

2007-11-09 16:26  edwards

	* lib/Makefile.am: Added inline_random_transf_gauge and
	  inline_gauge_transf_obj.

2007-11-09 16:24  edwards

	* tests/: chroma/hadron/gauge_transf/gauge_transf.ini.xml,
	  chroma/hadron/gauge_transf/gauge_transf.metric.xml,
	  chroma/hadron/gauge_transf/gauge_transf.out.xml,
	  chroma/hadron/gauge_transf/regres.pl, regres.pl: New regression
	  tests.

2007-11-09 16:18  edwards

	* lib/meas/inline/gfix/: inline_coulgauge.cc, inline_coulgauge.h:
	  Now require output of gauge rotation fields.

2007-11-09 15:57  edwards

	* tests/chroma/gfix/coulgauge/: coulgauge.ini.xml,
	  coulgauge.out.xml: Now requires the output of the gauge_rotation
	  matrices.

2007-11-08 10:04  bjoo

	* lib/actions/ferm/fermstates/stout_fermstate_params.cc,
	  lib/actions/ferm/fermstates/stout_fermstate_w.h,
	  lib/actions/ferm/linop/eoprec_slrc_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_slrc_linop_w.h,
	  other_libs/Makefile.am, other_libs/qdp-lapack/Makefile.am,
	  other_libs/qdp-lapack/lib/Makefile.am,
	  tests/t_leapfrog/regres.pl,
	  tests/t_leapfrog/t_leapfrog.prec_slrc.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_slrc.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_slrc.metric.xml: Fixed
	  Makefiles. Added SLRC patches. Added Dirks bugreport fix

2007-11-07 22:27  edwards

	* tests/chroma/hadron/propagator/regres.pl: Turned on
	  prec_clover.eigcg test.

2007-11-07 22:26  edwards

	* tests/chroma/hadron/propagator/: prec_clover.eigcg.metric.xml,
	  prec_clover.eigcg.out.xml: First version.

2007-11-07 15:52  bjoo

	* other_libs/sse_wilson_dslash/tests/: t_site_ops_parscalar.cc,
	  testMvvRecons.h, testMvvRecons32bit.cc, testMvvRecons64bit.cc:
	  Took out the deswizzling at the ends of hvv_decomp - did this
	  before - but now I fixed the tests this broke

2007-11-07 11:24  bjoo

	* other_libs/sse_wilson_dslash/lib/: Makefile.am,
	  decomp_32bit_parscalar.c: Oopsies

2007-11-07 10:50  bjoo

	* other_libs/sse_wilson_dslash/: aclocal.m4, configure,
	  lib/Makefile.am, lib/decomp_32bit_parscalar.c,
	  tests/timeDslash.cc, tests/timeDslash3D.cc: Added function to
	  dump assembly

2007-11-06 19:40  edwards

	* lib/meas/hadron/simple_baryon_seqsrc_w.cc: Fixed some doxygen
	  comments.

2007-11-06 17:04  kostas

	* lib/actions/ferm/invert/: inv_eigcg2.cc, norm_gram_schm.cc,
	  octave.h, syssolver_linop_eigcg.cc: fixed the code... it works
	  now... mostly. Needes alot of optimization and testing for the
	  various running modes.

2007-11-02 16:03  kostas

	* lib/actions/ferm/fermstates/extfield_aggregate_w.cc: removed
	  debugging info

2007-11-02 15:07  bjoo

	* other_libs/sse_wilson_dslash/lib/: decomp_32bit_parscalar.c,
	  decomp_hvv_32bit_parscalar.c, mvv_recons_32bit_parscalar.c,
	  recons_32bit_parscalar.c: Rearranged many parscalar thingies

2007-11-02 12:34  kostas

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h, extfield_fermstate_w.h: I think it works
	  now

2007-11-01 23:52  kostas

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_fermstate_w.cc: External Field now runs!! Do not know if
	  it works though...

2007-11-01 16:56  kostas

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h, extfield_fermstate_w.h,
	  ferm_createstate_aggregate_w.cc: extfield improvements... still
	  failing on creating the External Field dudad...

2007-11-01 14:30  bjoo

	* other_libs/sse_wilson_dslash/tests/timeDslash3D.cc: There was
	  some funny with the parscalar single timing routine. Fixed now

2007-11-01 11:33  bjoo

	* other_libs/sse_wilson_dslash/: lib/shift_tables_scalar_3d.c,
	  tests/timeDslash.cc: OK Added timing for 3d Dslash

2007-11-01 11:20  bjoo

	* other_libs/sse_wilson_dslash/tests/: Makefile.am,
	  timeDslash3D.cc, timeDslash3D.h, time_dslash_3d.cc: Added 3D
	  Dslash timing

2007-11-01 10:51  bjoo

	* other_libs/sse_wilson_dslash/tests/: dslash_3d_w.cc,
	  testSiteDslash32bit.cc: Added Scalar 3D Dslash

2007-11-01 10:35  bjoo

	* other_libs/sse_wilson_dslash/include/: shift_tables_scalar.h,
	  site_dslash_32bit_scalar.h, site_dslash_64bit_scalar.h: Added 3D
	  dslashen

2007-11-01 10:32  bjoo

	* other_libs/sse_wilson_dslash/lib/: Makefile.am,
	  shift_tables_scalar_3d.c, site_dslash_32bit_scalar.c,
	  sse_su3dslash_32bit_scalar_3d.c, sse_su3dslash_64bit_scalar_3d.c:
	  Added scalar versions of the 3d dslashen

2007-10-31 13:35  bjoo

	* other_libs/sse_wilson_dslash/include/mvv_recons_64bit.h: Added 64
	  bit 3D Dslash

2007-10-31 13:34  bjoo

	* other_libs/sse_wilson_dslash/lib/: Makefile.am,
	  mvv_recons_64bit_parscalar.c, qdp_packer_3d.cc,
	  recons_64bit_parscalar.c, sse_su3dslash_64bit_parscalar_3d.c: OK
	  3D Dslash Parscalar Double Prec in

2007-10-31 11:23  bjoo

	* other_libs/sse_wilson_dslash/: aclocal.m4, configure: First
	  version with working 3D Dslash in parscalar-single

2007-10-31 11:12  bjoo

	* other_libs/sse_wilson_dslash/lib/: Makefile.am,
	  mvv_recons_32bit_parscalar.c, recons_32bit_parscalar.c,
	  shift_tables_parscalar_3d.c, sse_su3dslash_32bit_parscalar.c,
	  sse_su3dslash_32bit_parscalar_3d.c: First cut at 3D dude is in

2007-10-31 11:11  bjoo

	* other_libs/sse_wilson_dslash/tests/: Makefile.am, dslash_3d_w.cc,
	  dslash_3d_w.h, t_dslash_3d.cc, testDslash3D.cc, testDslash3D.h,
	  testDslashFull.cc, testSiteDslash32bit.cc, timeDslash.cc,
	  unittest.h: OK, seems to work

2007-10-31 11:05  bjoo

	* other_libs/sse_wilson_dslash/include/: Makefile.am,
	  mvv_recons_32bit.h, recons.h, shift_tables_parscalar.h,
	  sse_dslash_3d.h, sse_dslash_qdp_packer.h,
	  sse_dslash_qdp_packer_3d.h: First cut with working 3d dslash in
	  parscalar single

2007-10-31 10:53  edwards

	* Makefile.am: Fixed name of regres_report_to_html.xsl

2007-10-31 10:19  edwards

	* aclocal.m4, configure: Induced changes

2007-10-31 10:18  edwards

	* Makefile.am: Added a "report" target in addition to the "xcheck"
	  target.

2007-10-31 10:14  edwards

	* scripts/: check_regres_runner.pl, create_regres_runner.pl,
	  queue_chroma_regressions.pl, run_chroma_xmldiff.pl,
	  strip_bar3ptfn.pl, wallformfac_delta.pl, wallformfac_nucl.pl,
	  wallformfac_pion.pl, wallformfac_rhopi.pl: Changed name printed
	  in Usage to $0 instead of a fixed (wrong) string name.

2007-10-29 22:56  kostas

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h, extfield_fermstate_w.cc: still the linker
	  fails if I add in the CreatExtFieldFermStateEnv::registerAll()

2007-10-29 01:04  edwards

	* lib/util/ferm/gammasgn_w.cc: Changed an error output line to use
	  the __func__ name instead of an (incorrect) string name.

2007-10-28 00:05  kostas

	* aclocal.m4, configure,
	  lib/actions/ferm/fermstates/extfield_aggregate_w.cc,
	  lib/actions/ferm/fermstates/extfield_aggregate_w.h,
	  lib/actions/ferm/fermstates/extfield_fermstate_w.cc,
	  lib/actions/ferm/fermstates/extfield_fermstate_w.h,
	  lib/actions/ferm/fermstates/ferm_createstate_aggregate_w.cc,
	  lib/actions/ferm/fermstates/fermstates.h: added external field
	  (constant magnetic)... linker still fails...	though.

2007-10-27 17:52  edwards

	* other_libs/: sse_wilson_dslash/aclocal.m4,
	  sse_wilson_dslash/include/sse_config_internal.h.in,
	  sse_wilson_dslash/configure, cg-dwf/aclocal.m4,
	  cg-dwf/cg-dwf-config-internal.h.in, cg-dwf/configure,
	  intel_sse_wilson_dslash/aclocal.m4,
	  intel_sse_wilson_dslash/include/sse_config_internal.h.in,
	  intel_sse_wilson_dslash/configure: Induced changes

2007-10-27 17:46  edwards

	* other_libs/qdp-lapack/: aclocal.m4,
	  include/qdp-lapack_config_internal.h.in, configure: Induced
	  changes

2007-10-27 17:09  edwards

	* aclocal.m4, configure: Induced changes

2007-10-26 17:17  tag chroma3-26-0

2007-10-26 17:17  bjoo

	* other_libs/qdp-lapack/configure: Fixed atypo indslash

2007-10-26 17:16  bjoo

	* other_libs/sse_wilson_dslash/: configure,
	  lib/sse_su3dslash_64bit_parscalar.c: Oops. propagated stuff to
	  double precision branch

2007-10-26 15:38  bjoo

	* aclocal.m4, configure.ac, configure, NEWS,
	  other_libs/qdp-lapack/configure,
	  other_libs/sse_wilson_dslash/configure: Bumped version and reran
	  autotools

2007-10-25 23:31  kostas

	* lib/actions/ferm/invert/: containers.h, inv_eigcg2_driver.cc,
	  syssolver_linop_eigcg.cc: fixed several bugs here and there. The
	  eigCG iteration seems to work. However, the refinment does
	  not....

2007-10-25 17:35  edwards

	* lib/actions/ferm/invert/syssolver_linop_eigcg.h: Fixed
	  initialization of MdagM to go through MdagMLinOp.

2007-10-25 12:10  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/linop/dslash_array_w.h,
	  lib/actions/ferm/linop/dslash_w.h,
	  lib/actions/ferm/linop/lwldslash_array_sse_old_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_sse_old_w.h,
	  lib/actions/ferm/linop/lwldslash_array_sse_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_sse_w.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/lwldslash_w_sse_old.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse_old.h,
	  mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am,
	  other_libs/qdp-lapack/configure,
	  other_libs/sse_wilson_dslash/configure: Added new sse dslash. Old
	  one will still work with --enable-sse-wilson-dslash-old switch

2007-10-24 15:54  bjoo

	* other_libs/sse_wilson_dslash/: include/shift_tables_parscalar.h,
	  include/sse_dslash_qdp_packer.h, lib/decomp_32bit_parscalar.c,
	  lib/decomp_hvv_32bit_parscalar.c,
	  lib/mvv_recons_32bit_parscalar.c, lib/recons_32bit_parscalar.c,
	  lib/shift_tables_parscalar.c, lib/site_dslash_32bit_scalar.c,
	  lib/sse_su3dslash_32bit_parscalar.c, tests/timeDslash.cc: Aligned
	  the stupid sign thingies and moved the offsetting back into the
	  parscalar single prec dslash. The code now runs at a speed
	  comparable to the old Dslash at least on a 64 bit machine. I
	  mucked about with trying to use extra registers in mvv_decomp and
	  it seems to help a little but the gain is hard to quantify - work
	  that one out

2007-10-24 09:48  tag chroma3-25-0

2007-10-24 09:48  edwards

	* NEWS: Info on 3.25.0

2007-10-24 09:45  edwards

	* tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.metric.xml:
	  Changed name of a xml group.

2007-10-24 09:40  edwards

	* lib/actions/ferm/invert/: syssolver_linop_eigcg.cc,
	  syssolver_linop_eigcg.h: Moved some unneeded includes to the .cc
	  file.

2007-10-24 00:26  edwards

	* other_libs/qdp-lapack/include/fortran_lapack.h: Changed include
	  of chromabase.h to qdp.h

2007-10-23 23:53  edwards

	* lib/actions/ferm/invert/inv_eigcg2.cc: Changed output name in
	  inverter to InvEigCG2.

2007-10-23 23:38  edwards

	* tests/chroma/hadron/propagator/: prec_clover.eigcg.ini.xml,
	  prec_clover.eigcg.out.xml: First version. Not working yet.

2007-10-23 23:29  edwards

	* tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.log.xml:
	  Updated to use new names.

2007-10-23 23:01  edwards

	* configure: Induced changes

2007-10-23 22:58  edwards

	* configure.ac: Changed to 3.25.0

2007-10-23 22:56  edwards

	* aclocal.m4: Induced changes

2007-10-23 22:55  edwards

	* other_libs/Makefile.am: Now build qdp-lapack.

2007-10-23 22:54  edwards

	* configure.ac, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: Turned on qdp-lapack.

2007-10-23 22:53  edwards

	* lib/: Makefile.am,
	  actions/ferm/invert/syssolver_linop_aggregate.cc: Added
	  qdp-lapack to library and include file. Turned on EigCG solver.

2007-10-23 22:46  edwards

	* lib/update/molecdyn/monomial/: eoprec_logdet_ee_monomial_w.cc,
	  eoprec_logdet_ee_monomial_w.h, monomial_aggregate_w.cc: Changed
	  logdet to a consistent naming scheme.

2007-10-23 22:46  edwards

	* lib/meas/hadron/barhqlq_w.cc: Fixed a doxygen comment.

2007-10-23 22:41  edwards

	* other_libs/qdp-lapack/lib/: fortran_lapack.cc, lapack_stub.cc:
	  Fixed QDPLapack namespace.

2007-10-23 22:40  edwards

	* other_libs/qdp-lapack/configure: Induced changes.

2007-10-23 22:39  edwards

	* other_libs/qdp-lapack/configure.ac: Added AC_MSG_NOTICE.

2007-10-23 22:38  edwards

	* lib/actions/ferm/invert/: inv_eigcg2.cc, norm_gram_schm.cc,
	  syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: Changed to use
	  QDPLapack environment.

2007-10-23 21:51  edwards

	* lib/actions/ferm/invert/: chroma_lapack.h, lapack_wrapper.cc,
	  lapack_wrapper.h: Moved to qdp-lapack.

2007-10-23 21:50  edwards

	* lib/actions/ferm/invert/syssolver_linop_eigcg.cc: Changes to
	  support new call interface.

2007-10-23 21:15  edwards

	* other_libs/qdp-lapack/: include/clapack_wrapper.h,
	  include/fortran_lapack.h, lib/clapack.cc, lib/fortran_lapack.cc:
	  Renamed.

2007-10-23 21:14  edwards

	* other_libs/qdp-lapack/: include/qdp-lapack_config_internal.h.in,
	  aclocal.m4, configure: Induced changes.

2007-10-23 21:14  edwards

	* other_libs/qdp-lapack/configure.ac: Added enable and
	  AM_CONDITIONALs.

2007-10-23 21:13  edwards

	* other_libs/qdp-lapack/: include/Makefile.am, lib/Makefile.am:
	  Renamed some files.

2007-10-23 21:13  edwards

	* other_libs/qdp-lapack/acinclude.m4: Added QDP++ build macro.

2007-10-19 09:47  bjoo

	* other_libs/sse_wilson_dslash/tests/: time_dslash.cc, unittest.h:
	  Added qmt_init call to unittest.h

2007-10-17 10:47  bjoo

	* other_libs/sse_wilson_dslash/: lib/decomp_32bit_parscalar.c,
	  lib/decomp_hvv_32bit_parscalar.c,
	  lib/mvv_recons_32bit_parscalar.c, lib/recons_32bit_parscalar.c,
	  tests/Makefile.am, tests/unittest.h: Replaced MULs with XORs

2007-10-16 16:12  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Some more print statements.

2007-10-16 16:11  edwards

	* lib/meas/schrfun/: sfcurrents_w.cc, sfpcac_w.cc: Added some
	  debugging print statements.

2007-10-16 07:49  bjoo

	* other_libs/sse_wilson_dslash/tests/time_dslash.cc: Timing changed
	  to nicer volume

2007-10-13 17:04  edwards

	* lib/meas/inline/eig/inline_eigbnds.cc: Fixed namespace to "name".

2007-10-13 17:02  edwards

	* lib/meas/inline/glue/inline_wilslp.cc: Added some diagnostic
	  output.

2007-10-13 16:55  edwards

	* mainprogs/main/hmc.cc: Added more diagnostic output around
	  default measurements.

2007-10-13 16:46  edwards

	* lib/meas/inline/: eig/inline_eigbnds.cc,
	  hadron/inline_make_source_w.cc, hadron/inline_mesonspec_w.cc,
	  hadron/inline_propagator_w.cc, hadron/inline_sink_smear_w.cc,
	  schrfun/inline_sfpcac_w.cc: Moved around diagnostic printing so
	  as to appear at the beginning of the function call.

2007-10-12 16:49  bjoo

	* other_libs/sse_wilson_dslash/: configure, tests/Makefile.am,
	  tests/timeDslash.cc, tests/timeDslash.h, tests/time_dslash.cc:
	  Added a DslashTiming test - time_dslash

2007-10-11 16:22  edwards

	* other_libs/qdp-lapack/include/qdp-lapack.h: Initial version.

2007-10-11 16:21  edwards

	* other_libs/qdp-lapack/: AUTHORS, COPYING, INSTALL, Makefile.am,
	  NEWS, README, aclocal.m4, configure, configure.ac,
	  config/depcomp, config/install-sh, config/missing,
	  config/mkinstalldirs, include/Makefile.am,
	  include/clapack_wrapper.h,
	  include/qdp-lapack_config_internal.h.in, lib/Makefile.am,
	  lib/clapack.cc, lib/lapack_stub.cc: Very first crack at a
	  qdp-lapack package.

2007-10-11 15:00  edwards

	* lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h,
	  norm_gram_schm.cc, norm_gram_schm.h, syssolver_linop_eigcg.cc,
	  syssolver_linop_eigcg.h: Rerrangement of code.

2007-10-09 14:07  edwards

	* lib/actions/ferm/invert/: containers.h, inv_eigcg2.cc,
	  inv_eigcg2.h, syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h:
	  More code compiles.

2007-10-09 11:34  edwards

	* tests/t_leapfrog/t_leapfrog.prec_slrc.sfnonpt.out.xml: Do no
	  need.

2007-10-09 11:34  edwards

	* tests/t_leapfrog/t_leapfrog.prec_slrc.sfnonpt.log.xml: Added log
	  file.

2007-10-09 10:02  edwards

	* lib/actions/ferm/fermacts/fermacts_w.h: Added SLIC and SLRC.

2007-10-09 01:29  edwards

	* lib/meas/inline/io/qio_write_obj_funcmap.cc: Moved RitzPairs to a
	  namespace.

2007-10-09 01:28  edwards

	* lib/actions/ferm/invert/: containers.h, inv_eigcg2.cc,
	  inv_eigcg2.h, lapack_wrapper.h, simpleGramSchmidt.cc,
	  simpleGramSchmidt.h: Inv_eigcg2 appears to compile. Moved
	  Gram-Schmidt routines into inv_eigcg2

2007-10-08 23:31  edwards

	* lib/actions/ferm/linop/: eoprec_slrc_linop_w.cc,
	  eoprec_slrc_linop_w.h: Added RCS Id tag.

2007-10-08 23:28  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Turned on
	  SLRC.

2007-10-08 23:27  edwards

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_slrc.sfnonpt.ini.xml,
	  t_leapfrog.prec_slrc.sfnonpt.metric.xml,
	  t_leapfrog.prec_slrc.sfnonpt.out.xml: Added prec_slrc.sfnonpt .

2007-10-08 23:06  edwards

	* lib/: Makefile.am,
	  actions/ferm/fermacts/eoprec_slrc_fermact_w.cc,
	  actions/ferm/fermacts/eoprec_slrc_fermact_w.h,
	  actions/ferm/linop/eoprec_slic_linop_w.cc,
	  actions/ferm/linop/eoprec_slic_linop_w.h,
	  actions/ferm/linop/eoprec_slrc_linop_w.cc,
	  actions/ferm/linop/eoprec_slrc_linop_w.h: Added containers.h and
	  eoprec_slrc_{fermact,linop}. Modified SLIC to not be specific to
	  SimpleFermState.

2007-10-08 23:03  edwards

	* lib/meas/inline/io/qio_write_obj_funcmap.cc: Added
	  RitzPairsLatticeFermion writer.

2007-10-08 23:03  edwards

	* lib/actions/ferm/invert/containers.h: Some more fixes. Now
	  compiles within qio_write_funcmap_w.o

2007-10-08 16:44  edwards

	* lib/actions/ferm/invert/syssolver_eigcg_params.h: Fixed
	  compilation.

2007-10-07 22:58  edwards

	* lib/actions/ferm/invert/containers.h: Try to finish some of
	  RitzPairs.

2007-10-06 11:33  edwards

	* lib/actions/ferm/linop/central_tprec_nospin_utils.h: Hopefully
	  should compile for other Nc and Ns. It won't work, however, for
	  anything other than Nc=3 and Ns=4

2007-10-06 11:24  edwards

	* lib/util/gauge/stout_utils.cc: Fixed a Nc construct.

2007-10-05 01:28  edwards

	* docs/chromadoc: Updated by doxygen itself to newer input version.

2007-10-04 23:39  edwards

	* lib/actions/ferm/invert/: syssolver_eigcg_params.cc,
	  syssolver_eigcg_params.h: Added cleanUpEvecs option.

2007-10-04 23:39  edwards

	* lib/actions/ferm/invert/containers.h: Removed include of handle.h

2007-10-04 23:38  edwards

	* lib/actions/ferm/invert/syssolver_linop_eigcg.h: Added an erase
	  option for the named object.

2007-10-04 17:39  edwards

	* lib/actions/ferm/invert/: containers.h, syssolver_linop_eigcg.h:
	  Started switch to a container called RitzPairs for GoodEval and
	  GoodEvec.

2007-10-04 16:39  kostas

	* lib/actions/ferm/invert/inv_eigcg2.cc: added a new subspace
	  matrix to act on ritz pairs

2007-10-04 09:53  edwards

	* lib/util/ferm/eigeninfo.h: Added some doxygen info.

2007-10-03 13:18  bjoo

	* other_libs/sse_wilson_dslash/tests/: t_dslash.cc,
	  t_dslash_parscalar.cc, t_dslash_scalar.cc,
	  t_site_ops_parscalar.cc, t_site_ops_scalar.cc: OK. Mucked more
	  with the tests

2007-10-03 13:13  bjoo

	* other_libs/sse_wilson_dslash/: configure, configure.ac,
	  lib/decomp_32bit_parscalar.c, lib/decomp_hvv_32bit_parscalar.c,
	  lib/recons_32bit_parscalar.c, tests/Makefile.am: OK added
	  --enable-testing so I can build but not run the tests and I added
	  --enable-site-tests to enable the sse site operations

2007-10-02 16:54  bjoo

	* other_libs/sse_wilson_dslash/: include/decomp.h,
	  include/decomp_hvv.h, include/mvv_recons_64bit.h,
	  include/recons.h, lib/decomp_64bit_parscalar.c,
	  lib/decomp_hvv_64bit_parscalar.c,
	  lib/mvv_recons_64bit_parscalar.c, lib/recons_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c: Cleaned out some compiler
	  warnings and unused variables

2007-10-02 16:40  bjoo

	* other_libs/sse_wilson_dslash/: include/Makefile.am,
	  include/site_dslash_32bit_scalar.h,
	  include/site_dslash_64bit_scalar.h, include/sse32.h,
	  include/sse64.h, lib/Makefile.am, lib/site_dslash_32bit_scalar.c,
	  lib/site_dslash_64bit_scalar.c, lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_64bit_scalar.c, tests/Makefile.am,
	  tests/sse32.h, tests/sse64.h, tests/t_dslash.cc,
	  tests/t_dslash_scalar.cc, tests/testSiteDslash.h,
	  tests/testSiteDslash32bit.cc, tests/testSiteDslash64bit.cc: OK.
	  Removed inlines from scalar builds, complete with tests. Moved
	  sse.h files with old inline code into the tests area

2007-10-01 16:09  bjoo

	* other_libs/sse_wilson_dslash/tests/: testDecomp32bit.cc,
	  testDecomp64bit.cc, testDecompHvv32bit.cc, testMvvRecons32bit.cc,
	  testMvvRecons64bit.cc, testRecons32bit.cc, testRecons64bit.cc:
	  Cleaned up the tests a little

2007-10-01 14:45  bjoo

	* other_libs/sse_wilson_dslash/: configure, include/types32.h,
	  include/types64.h, lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c: Replaced the prefetch
	  macros. The parscalar files no longer depend on sse32.h and
	  sse64.h

2007-10-01 14:17  bjoo

	* other_libs/sse_wilson_dslash/: include/Makefile.am,
	  include/mvv_recons.h, include/mvv_recons_32bit.h,
	  include/mvv_recons_64bit.h, lib/Makefile.am,
	  lib/decomp_64bit_parscalar.c, lib/decomp_hvv_64bit_parscalar.c,
	  lib/mvv_recons_32bit_parscalar.c,
	  lib/mvv_recons_64bit_parscalar.c, lib/recons_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c, tests/Makefile.am,
	  tests/t_dslash.cc, tests/t_dslash_parscalar.cc,
	  tests/testDecomp32bit.cc, tests/testDecomp64bit.cc,
	  tests/testDecompHvv64bit.cc, tests/testMvvRecons32bit.cc,
	  tests/testMvvRecons64bit.cc, tests/testRecons64bit.cc: 64 bit
	  parscalar now works with intrinsics

2007-09-27 22:09  kostas

	* lib/actions/ferm/invert/: syssolver_eigcg_params.cc,
	  syssolver_eigcg_params.h: added one more parameter...

2007-09-27 22:05  kostas

	* lib/actions/ferm/invert/inv_eigcg2_driver.cc: just a remnider
	  comment that this file needs to be removed once I am done with
	  eigCG

2007-09-27 22:02  kostas

	* lib/actions/ferm/invert/: inv_eigcg2.cc,
	  syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: added the
	  maing eigCG loop ... we are ready to test compilation...

2007-09-27 16:07  bjoo

	* other_libs/sse_wilson_dslash/include/: Makefile.am, decomp_hvv.h,
	  mvv_recons.h, recons.h: OK. Converted the inline assembly for the
	  32bit targets modulo the prefetching macros

2007-09-27 16:07  bjoo

	* other_libs/sse_wilson_dslash/tests/: Makefile.am, t_dslash.cc,
	  testDecompHvv32bit.cc, testMvvRecons.h, testMvvRecons32bit.cc,
	  testRecons.h, testRecons32bit.cc: Added tests for 32bit site
	  decomp/recon stuff

2007-09-27 16:05  bjoo

	* other_libs/sse_wilson_dslash/lib/: Makefile.am,
	  decomp_hvv_32bit_parscalar.c, mvv_recons_32bit_parscalar.c,
	  recons_32bit_parscalar.c, sse_su3dslash_32bit_parscalar.c: Added
	  recons etc

2007-09-27 10:47  kostas

	* lib/actions/ferm/invert/: syssolver_cg_params.cc,
	  syssolver_eigcg_params.cc, syssolver_eigcg_params.h: done with
	  the eigcg params. fixed bug in write() of syssolver_cg_params

2007-09-27 00:33  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Removed the debugging
	  print statements.

2007-09-27 00:04  kostas

	* lib/actions/ferm/invert/syssolver_eigcg_params.h: added list of
	  parameters needed for the eigCG syssolver

2007-09-26 16:45  bjoo

	* other_libs/sse_wilson_dslash/tests/: Makefile.am, t_dslash.cc,
	  testDecomp.h, testDecomp32bit.cc, testDecompHvv.h,
	  testDecompHvv32bit.cc: Added sitewise decomp and decomphvv tests

2007-09-26 16:44  bjoo

	* other_libs/sse_wilson_dslash/lib/: Makefile.am,
	  decomp_32bit_parscalar.c, decomp_hvv_32bit_parscalar.c,
	  sse_su3dslash_32bit_parscalar.c: The assembly bits using
	  intrinsics

2007-09-26 16:43  bjoo

	* other_libs/sse_wilson_dslash/include/: Makefile.am, decomp.h,
	  decomp_hvv.h, sse32.h, types32.h: Added headers for decomp stuff

2007-09-25 22:50  kostas

	* lib/actions/ferm/invert/: chroma_lapack.h, lapack_wrapper.cc,
	  lapack_wrapper.h: the lapack bits

2007-09-25 22:46  kostas

	* lib/actions/ferm/invert/: containers.h, inv_eigcg2_driver.cc,
	  simpleGramSchmidt.cc, simpleGramSchmidt.h: The logic for the
	  refinement and deflation

2007-09-25 17:17  edwards

	* lib/actions/ferm/invert/: inv_eigcg2.cc, inv_eigcg2.h,
	  syssolver_eigcg_params.cc, syssolver_eigcg_params.h,
	  syssolver_linop_eigcg.cc, syssolver_linop_eigcg.h: First pass at
	  inserting code for a eigenvector accelerated CG2.

2007-09-25 16:24  bjoo

	* other_libs/sse_wilson_dslash/: configure,
	  include/shift_tables_parscalar.h, lib/shift_tables_parscalar.c,
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c, tests/t_dslash.cc: Went back
	  to the old crappy wayof dealing with the bounds and it now works
	  again. SO I must be doing something wrong and all these bounds
	  are probably needed to get the comms right

2007-09-25 15:45  bjoo

	* other_libs/sse_wilson_dslash/lib/shift_tables_parscalar.c:
	  Malloced the wrong size here by accident

2007-09-23 11:42  edwards

	* lib/meas/inline/io/default_gauge_field.cc: Removed unneeded
	  XMLBufferWriter in "set".

2007-09-22 11:42  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Removed some unneeded
	  debugging.

2007-09-21 21:34  edwards

	* tests/chroma/hadron/seqsource/seqsource-baryon.metric.xml: Added
	  more regression checks.

2007-09-21 21:31  edwards

	* tests/chroma/hadron/seqsource/: seqsource-baryon.out.xml: New
	  regression output.

2007-09-21 21:24  edwards

	* tests/chroma/hadron/seqsource/seqsource-baryon.ini.xml: New input
	  file.

2007-09-21 21:20  edwards

	* tests/chroma/hadron/seqsource/seqsource-baryon.ini.pl: Added new
	  NUCL_NUCL_{U,D} seqsources.

2007-09-21 21:19  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Split out extraction of
	  gauge_xml to check for possible errors.

2007-09-21 21:19  edwards

	* lib/named_obj.h: Added check on creation of new NamedObject to
	  see if there was a failure.

2007-09-21 15:12  bjoo

	* other_libs/sse_wilson_dslash/:
	  lib/sse_su3dslash_64bit_parscalar.c, tests/Makefile.am: Cleaned
	  out spurious stuff from 64 bit parscalar.

2007-09-21 13:19  bjoo

	* other_libs/sse_wilson_dslash/: configure, configure.ac,
	  include/Makefile.am, include/dispatch_parscalar.h,
	  include/dispatch_scalar.h, include/shift_tables_parscalar.h,
	  include/shift_tables_scalar.h, include/sse_config_internal.h.in,
	  include/types32.h, include/types64.h, lib/Makefile.am,
	  lib/dispatch_parscalar.c, lib/dispatch_scalar.c,
	  lib/shift_tables_parscalar.c, lib/shift_tables_scalar.c,
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_scalar.c: Commit it

2007-09-21 07:42  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Added another debugging
	  line.

2007-09-21 07:31  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Added some more
	  debugging output.

2007-09-21 01:08  edwards

	* lib/meas/hadron/simple_baryon_seqsrc_w.cc: Fixed SpinMatTsp_t
	  reader.

2007-09-21 00:38  edwards

	* lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_plaquette.h,
	  mainprogs/main/chroma.cc, mainprogs/main/hmc.cc,
	  mainprogs/main/purgaug.cc: Moved inline plaquette code into its
	  own namespace.  Made main code catch-es, in some case, print all
	  nodes of info.

2007-09-20 16:15  kostas

	* lib/meas/inline/hadron/: inline_stoch_hadron_w.cc,
	  inline_stoch_hadron_w.h: a little bit more...

2007-09-20 16:05  bjoo

	* other_libs/sse_wilson_dslash/: include/shift_tables_parscalar.h,
	  lib/shift_tables_parscalar.c, tests/Makefile.am,
	  tests/testDslashFull.cc: OK! Cleaned out the 32bit parscalar
	  stuff. Moved the offset tables out to shift_tables.c

2007-09-20 15:19  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Fixed tetst of cgs
	  pointer check.

2007-09-20 15:16  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Put namespace
	  qualification on "name".

2007-09-20 15:11  edwards

	* mainprogs/main/: chroma.cc, hmc.cc, purgaug.cc: Added a
	  std::bad_alloc catch.

2007-09-20 15:08  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Put in some debugging
	  comments.

2007-09-20 11:25  bjoo

	* other_libs/sse_wilson_dslash/lib/: shift_tables_parscalar.c,
	  sse_su3dslash_32bit_parscalar.c: Appears to work. Moved to offset
	  model

2007-09-18 23:42  kostas

	* lib/meas/inline/hadron/inline_stoch_hadron_w.cc: baryon operator
	  data structure finished...

2007-09-18 16:47  kostas

	* lib/meas/inline/hadron/: inline_stoch_hadron_w.cc,
	  inline_stoch_hadron_w.h: incremental improvement... long way to
	  go.

2007-09-18 16:19  bjoo

	* other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_parscalar.c:
	  Parscalar single cleanup finished for now

2007-09-18 15:33  bjoo

	* other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_parscalar.c:
	  Working

2007-09-18 15:25  bjoo

	* other_libs/sse_wilson_dslash/lib/sse_su3dslash_32bit_parscalar.c:
	  Working

2007-09-18 13:20  bjoo

	* other_libs/sse_wilson_dslash/include/Makefile.am: Started
	  parscalar cleanup

2007-09-18 13:20  bjoo

	* other_libs/sse_wilson_dslash/:
	  lib/sse_su3dslash_32bit_parscalar.c,
	  lib/shift_tables_parscalar.c, include/shift_tables_parscalar.h:
	  SSE SU3DSLASH Parscalar cleanup

2007-09-14 22:39  kostas

	* lib/meas/inline/hadron/: inline_stoch_hadron_w.cc,
	  inline_stoch_hadron_w.h: fixed IO

2007-09-14 16:43  kostas

	* lib/meas/inline/hadron/: inline_stoch_hadron_w.cc,
	  inline_stoch_hadron_w.h: added the Stoch QQQ and QQbar

2007-09-14 15:33  bjoo

	* other_libs/sse_wilson_dslash/tests/: t_dslash.cc,
	  testDslashFull.cc: OK I cleaned out the 32 and 64 bit scalar
	  codes. Still uses inline asm but more readable.

2007-09-14 15:32  bjoo

	* other_libs/sse_wilson_dslash/include/: Makefile.am,
	  shift_tables_scalar.h: Shift table scalar cleaned up I hope

2007-09-14 15:32  bjoo

	* other_libs/sse_wilson_dslash/lib/: shift_tables_scalar.c,
	  sse_su3dslash_32bit_scalar.c, sse_su3dslash_64bit_scalar.c:
	  Scalar stuff cleaned up I hope

2007-09-13 09:52  bjoo

	* other_libs/sse_wilson_dslash/: configure, configure.ac,
	  include/sse_config_internal.h.in,
	  lib/sse_su3dslash_64bit_parscalar.c: Cleaned out all the ifdefs
	  relating to processor - DP4 - SZIN - DSZIN - and SSE and SSE2. I
	  removed SSE and left the SSE2 case

2007-09-12 17:00  bjoo

	* other_libs/sse_wilson_dslash/lib/:
	  sse_su3dslash_32bit_parscalar.c, sse_su3dslash_32bit_scalar.c,
	  sse_su3dslash_64bit_scalar.c: Removed lots of ifdefs reduce to
	  -DP4 -DSZIN -DSSE2. Need to finish of 64 bit parscalar piece

2007-09-12 16:29  bjoo

	* other_libs/sse_wilson_dslash/include/: sse32.h, sse64.h,
	  sse_align.h: Removed P4 SZIN and SSE and SSE2 references. This is
	  now SSE2 clean

2007-09-12 15:47  bjoo

	* other_libs/sse_wilson_dslash/: AUTHORS, COPYING, NEWS,
	  tests/testDslashFull.cc, tests/unittest.h: Works for scalar,
	  parscalar-single, scalar-double, parscalar-sibgle-double QDP
	  builds on a 4488 lattice

2007-09-12 15:33  bjoo

	* other_libs/sse_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure,
	  configure.ac, config/config.guess, config/config.sub,
	  config/depcomp, config/install-sh, config/missing,
	  include/Makefile.am, include/sse32.h, include/sse64.h,
	  include/sse_align.h, include/sse_config.h,
	  include/sse_config_internal.h.in, include/sse_dslash.h,
	  include/sse_dslash_qdp_packer.h, lib/Makefile.am,
	  lib/packer_nopad.c, lib/packer_p4_pad.c, lib/qdp_packer_nopad.cc,
	  lib/qdp_packer_p4_pad.cc, lib/shift_tables_parscalar.c,
	  lib/shift_tables_scalar.c, lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_scalar.c, tests/Makefile.am,
	  tests/dslashm_w.cc, tests/dslashm_w.h, tests/reunit.cc,
	  tests/reunit.h, tests/t_dslash.cc, tests/testDslashFull.cc,
	  tests/testDslashFull.h, tests/unittest.h: Initial revision

2007-09-12 15:33  bjoo

	* other_libs/sse_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  Makefile.am, NEWS, README, acinclude.m4, aclocal.m4, configure,
	  configure.ac, config/config.guess, config/config.sub,
	  config/depcomp, config/install-sh, config/missing,
	  include/Makefile.am, include/sse32.h, include/sse64.h,
	  include/sse_align.h, include/sse_config.h,
	  include/sse_config_internal.h.in, include/sse_dslash.h,
	  include/sse_dslash_qdp_packer.h, lib/Makefile.am,
	  lib/packer_nopad.c, lib/packer_p4_pad.c, lib/qdp_packer_nopad.cc,
	  lib/qdp_packer_p4_pad.cc, lib/shift_tables_parscalar.c,
	  lib/shift_tables_scalar.c, lib/sse_su3dslash_32bit_parscalar.c,
	  lib/sse_su3dslash_32bit_scalar.c,
	  lib/sse_su3dslash_64bit_parscalar.c,
	  lib/sse_su3dslash_64bit_scalar.c, tests/Makefile.am,
	  tests/dslashm_w.cc, tests/dslashm_w.h, tests/reunit.cc,
	  tests/reunit.h, tests/t_dslash.cc, tests/testDslashFull.cc,
	  tests/testDslashFull.h, tests/unittest.h: New Dslash Package

2007-09-12 10:11  tag chroma3-24-3

2007-09-12 10:11  bjoo

	* NEWS, aclocal.m4, configure, configure.ac: Preparation for
	  version 3.24.3

2007-09-07 09:23  tag root_ks_scalar_kilcup

2007-09-07 09:23  edwards

	* scripts/regenerate.csh: Added an error check for regression
	  generation.

2007-09-02 16:45  edwards

	* tests/chroma/hadron/building_blocks/: bb-baryon.metric.xml,
	  bb-deriv.metric.xml: Changed tolerance to 1.0e-5

2007-09-02 16:41  edwards

	* tests/chroma/glue/wilslp/wilslp.metric.xml: Changed tolerance to
	  2.0e-5.

2007-09-01 22:58  edwards

	* aclocal.m4, configure: Induced changes

2007-09-01 22:57  edwards

	* configure.ac: Added more stuff for 7n_mpirun_rsh test case
	  runner.

2007-09-01 22:51  edwards

	* aclocal.m4, configure: Induced changes

2007-09-01 22:51  edwards

	* configure.ac: Added 7n_mpirun_rsh as a test case runner.

2007-09-01 19:51  uid3790

	* scripts/test_runners/7n_mpirun_rsh_runner.sh.in: 7n runner.

2007-09-01 19:44  uid3790

	* lib/actions/ferm/linop/: dwffld_w.cc,
	  eoprec_nef_general_linop_array_w.cc, eoprec_nef_linop_array_w.cc,
	  eoprec_ovdwf_linop_array_w.cc, eoprec_ovext_linop_array_w.cc,
	  eoprec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  eoprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lwldslash_qdpopt_w.cc: Removed some extraneous semi-colons.

2007-09-01 19:43  uid3790

	* lib/actions/ferm/linop/: fat7_links_s.cc, improvement_terms_s.h:
	  Added some doxygen comments.

2007-09-01 19:34  uid3790

	* lib/actions/ferm/linop/lwldslash_qdpopt_w.cc: Moved around where
	  "ff" is defined.

2007-09-01 19:29  edwards

	* lib/actions/ferm/linop/: overlapbu_linop_w.cc,
	  overlapbu_linop_w.h: Removed since not used.

2007-09-01 19:29  edwards

	* lib/actions/ferm/linop/linop_w.h: Removed overlapbu_linop.

2007-09-01 18:38  edwards

	* aclocal.m4: Induced changes

2007-09-01 18:35  edwards

	* lib/Makefile.am: Removed overlapbu_linop_w.{h,cc} since they are
	  not used.

2007-09-01 14:53  edwards

	* lib/actions/ferm/linop/: asq_dsl_s.h, asqtad_dslash.h: Put in
	  some doxygen comments.

2007-08-31 08:47  bjoo

	* aclocal.m4, chroma-config.in, configure, configure.ac: Fixed
	  config script for cg-dwf I hope

2007-08-30 23:33  edwards

	* lib/actions/ferm/fermbcs/simple_fermbc.cc: Put in a check on
	  length of "boundary".

2007-08-30 23:30  edwards

	* lib/io/qprop_io.cc: Put in a check on "boundary" length.

2007-08-30 13:36  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Removed some unused
	  bits of code.

2007-08-30 13:28  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Changed warning
	  comment again.

2007-08-30 13:27  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Improved warning
	  comment.

2007-08-29 09:50  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Slight
	  rearrangements of output and some bits of code.

2007-08-29 09:34  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Changed slightly
	  some strings in the error exit cases.

2007-08-29 09:31  edwards

	* lib/util/gauge/: expmat.cc, su2extract.cc, sunfill.cc: Changed
	  QDP_error_exit to the usual QDPIO::cerr,abort.

2007-08-29 09:15  edwards

	* lib/util/gauge/eeu1.cc: Changed error string.

2007-08-29 09:14  edwards

	* lib/util/gauge/eesu2.cc: Fixed error check.

2007-08-28 13:51  edwards

	* tests/chroma/schrfun/schrfun-hadspec.metric.xml: Fixed paths
	  again.

2007-08-28 13:50  edwards

	* tests/chroma/schrfun/schrfun-hadspec.metric.xml: Changed paths.

2007-08-28 13:44  edwards

	* tests/chroma/schrfun/: schrfun-hadspec.ini.xml,
	  schrfun-hadspec.out.xml: Updated regression.

2007-08-28 13:24  uid3790

	* tests/chroma/schrfun/regres.pl: Inserted missing comma.

2007-08-28 00:56  uid3790

	* lib/meas/inline/hadron/inline_hadspec_w.cc: Changed slightly a
	  diagnostic warning message.

2007-08-27 19:02  edwards

	* tests/chroma/schrfun/: schrfun-hadspec.out.xml,
	  schrfun-pcac.out.xml: Updated.

2007-08-27 18:53  edwards

	* tests/chroma/schrfun/: regres.pl, schrfun-pcac.ini.xml,
	  schrfun-pcac.metric.xml, schrfun-pcac.out.xml, schrfun.ini.xml,
	  schrfun.metric.xml, schrfun.out.xml: Moved schrfun.* to
	  schrfun-pcac.*

2007-08-27 18:51  edwards

	* tests/chroma/schrfun/schrfun-hadspec.metric.xml: Metric for
	  hadspec with SF sources.

2007-08-27 18:47  edwards

	* tests/chroma/schrfun/regres.pl: Added schrfun-hadspec

2007-08-27 17:42  edwards

	* tests/chroma/schrfun/: schrfun-hadspec.ini.xml,
	  schrfun-hadspec.out.xml, schrfun.ini.xml, schrfun.out.xml:
	  Updated regression tests.

2007-08-27 17:22  edwards

	* lib/meas/inline/hadron/inline_hadspec_w.cc: Now support
	  SF_{POINT,SHELL,WALL}_SOURCE

2007-08-27 17:19  edwards

	* lib/meas/inline/hadron/inline_hadspec_w.cc: Changed to only set
	  BC if boundary is actually found.

2007-08-27 17:19  edwards

	* lib/meas/sources/: sf_pt_source_const.cc, sf_pt_source_const.h,
	  sf_sh_source_const.cc, sf_sh_source_const.h,
	  sf_wall_source_const.cc, sf_wall_source_const.h: Added fermbc to
	  input.  Added catch of bad_cast.

2007-08-27 17:18  edwards

	* lib/meas/sinks/: wall_sink_smearing.cc, wall_sink_smearing.h: New
	  wall sink smearing.

2007-08-27 17:17  edwards

	* lib/io/qprop_io.cc: Made getFermActBoundary throw an error and
	  NOT exit if boundary is not found.

2007-08-27 17:17  edwards

	* lib/Makefile.am: Added wall_sink_smearing.

2007-08-27 17:04  edwards

	* lib/meas/inline/hadron/inline_qqbar_w.cc: Removed searching for
	  boundary.

2007-08-27 17:03  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Removed searching
	  for BC.

2007-08-27 16:17  uid3790

	* lib/meas/schrfun/: sf_pt_source_const.cc, sf_pt_source_const.h,
	  sf_sh_source_const.cc, sf_sh_source_const.h,
	  sf_source_const_aggregate.cc, sf_source_const_aggregate.h,
	  sf_source_const_factory.h, sf_source_construction.h,
	  sf_wall_source_const.cc, sf_wall_source_const.h: No longer used -
	  been absorbed into  chroma/lib/meas/sources.

2007-08-27 16:10  uid3790

	* tests/chroma/schrfun/: schrfun-hadspec.ini.xml,
	  schrfun-hadspec.out.xml, schrfun.ini.xml, schrfun.out.xml:
	  Updated tests.

2007-08-27 16:07  uid3790

	* lib/meas/schrfun/sfpcac_w.cc: Added debugging output for forward
	  propagator.

2007-08-27 16:06  uid3790

	* lib/util/gauge/: sf_gauge_init.cc, sf_gauge_init.h: Changed
	  sf_gauge_init to go through GaugeState mechanisms.

2007-08-27 16:06  uid3790

	* lib/meas/smear/link_smearing_aggregate.cc: Changed explicit path
	  to LinkSmearing.

2007-08-27 16:05  uid3790

	* lib/meas/sinks/: wall_sink_smearing.cc, wall_sink_smearing.h: New
	  wall sinks.

2007-08-27 16:05  uid3790

	* lib/Makefile.am: Moved schrfun sources to canonical source
	  directory. They are now SF_SHELL_SOURCE kind of thingies like
	  their cousins SHELL_SOURCE.

2007-08-27 16:04  uid3790

	* lib/meas/sources/: sf_pt_source_const.cc, sf_pt_source_const.h,
	  sf_sh_source_const.cc, sf_sh_source_const.h,
	  sf_wall_source_const.cc, sf_wall_source_const.h,
	  source_const_aggregate.cc: New sources.

2007-08-27 16:03  uid3790

	* lib/meas/sources/pt_source_const.cc: Removed explicit paths.

2007-08-27 16:03  uid3790

	* lib/meas/sources/sh_source_const.cc: Removed commented-out
	  explicit paths.

2007-08-27 16:02  uid3790

	* lib/meas/sources/wall_source_const.cc: Write out source type.

2007-08-27 16:02  uid3790

	* lib/meas/sinks/: pt_sink_smearing.cc, sh_sink_smearing.cc: Got
	  rid of explicit paths to sub-param groups.

2007-08-27 16:00  uid3790

	* lib/meas/inline/: glue/inline_apply_gaugestate.cc,
	  glue/inline_apply_gaugestate.h,
	  hadron/inline_apply_fermstate_w.cc,
	  hadron/inline_apply_fermstate_w.h: Moved params struct and
	  inlinemeas to live inside the Env. namespace.

2007-08-27 14:24  edwards

	* lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc: Removed
	  explicit <LatticeFermion> tag.

2007-08-27 14:18  edwards

	* lib/actions/ferm/invert/: invcg2.cc, invcg2.h, invcg2_array.cc,
	  invcg2_array.h: Made single and double precision versions
	  explicit.

2007-08-27 13:52  bjoo

	* lib/actions/ferm/invert/invcg2_array.h: Ooopsie

2007-08-27 10:41  bjoo

	* lib/actions/ferm/invert/invcg2_array.cc: Invcg2_array.cc

2007-08-25 00:56  edwards

	* lib/meas/smear/quark_displacement_aggregate.cc: Made path
	  explicit.

2007-08-25 00:54  edwards

	* lib/meas/smear/quark_smearing_aggregate.cc: Needs an explicit
	  path in ".path" in null group.

2007-08-25 00:51  edwards

	* lib/meas/smear/quark_smearing_aggregate.cc: Added a path.

2007-08-25 00:51  edwards

	* lib/meas/smear/quark_displacement_aggregate.cc: Fixed (I think) a
	  path.

2007-08-25 00:49  edwards

	* lib/meas/smear/quark_displacement_aggregate.cc: Set the path for
	  null group.

2007-08-25 00:37  edwards

	* lib/meas/sources/: pt_source_const.cc, sh_source_const.cc:
	  Initialize version 1	to have null Displacement group.

2007-08-25 00:09  edwards

	* lib/Makefile.am: Added sf_{pt,sh,wall}_source_const.* and
	  factories. New sources for Schroedinger functional.

2007-08-25 00:07  edwards

	* lib/meas/schrfun/: sf_pt_source_const.cc, sf_pt_source_const.h,
	  sf_sh_source_const.cc, sf_sh_source_const.h,
	  sf_source_const_aggregate.cc, sf_source_const_aggregate.h,
	  sf_source_const_factory.h, sf_source_construction.h,
	  sf_wall_source_const.cc, sf_wall_source_const.h: New sources for
	  Schroedinger Functional.

2007-08-25 00:02  edwards

	* lib/meas/sources/: pt_source_const.cc, pt_source_smearing.cc,
	  sh_source_const.cc, sh_source_smearing.cc: Replaced explict path
	  by XMLGroup_t.path

2007-08-24 16:58  edwards

	* tests/chroma/schrfun/: schrfun.ini.xml, schrfun.out.xml: Removed
	  some commented out xml.

2007-08-24 16:03  nilmani

	* PBS/spectrum/scripts/run_qqqdiquark_fly.pl: This perl script do
	  qqq construction and do not write diquark in disk : Nilmani, Aug
	  24, 2007

2007-08-24 16:01  nilmani

	* PBS/spectrum/bin/parse_baryons_qqqdiquark_fly.pl: This perl
	  script construct diquark and use that to do qqq contraction :
	  Nilmani Aug 24, 2007

2007-08-24 15:23  edwards

	* lib/meas/schrfun/: schrfun.h, sfcorr_w.cc, sfcorr_w.h,
	  sfcurcor_w.cc, sfcurcor_w.h, sfcurrents_w.cc, sfcurrents_w.h,
	  sfpcac_w.cc, sfpcac_w.h: Split off Z_A and Z_V measurements into
	  their own separate routines and files. Renamed sfcurcor to
	  sfcorr.

2007-08-24 15:22  edwards

	* lib/Makefile.am: Added replaced sfcurcor_w with sfcorr_w and
	  sfcurrents_w

2007-08-23 21:30  edwards

	*
	  tests/chroma/hadron/stoch_group_baryon/create_chroma_xml_small_eo.pl:
	  Generates input file for stoch_group_baryon.

2007-08-23 19:27  edwards

	* tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml,
	  gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml,
	  glue/gaugestate/gaugestate.out.xml, glue/wilslp/wilslp.out.xml,
	  hadron/bar3ptfn/bar3ptfn.out.xml,
	  hadron/building_blocks/bb-baryon.out.xml,
	  hadron/building_blocks/bb-deriv.out.xml,
	  hadron/building_blocks/bb-meson.out.xml,
	  hadron/fermstate/fermstate.out.xml,
	  hadron/hadron_contract/meson_2pt/meson_2pt.out.xml,
	  hadron/hadron_contract/stoch_condensates/stoch_condensates.out.xml,
	  hadron/hadspec/hadspec.out.xml,
	  hadron/make_source/dilute.out.xml,
	  hadron/make_source/make_source.out.xml,
	  hadron/make_source/source-deriv.out.xml,
	  hadron/make_source/source-displace.out.xml,
	  hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml,
	  hadron/noisy_building_blocks/nbb.out.xml,
	  hadron/propagator/eo3dprec_s_cprec_t_clover.out.xml,
	  hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover.bicgstab.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_clover.out.xml,
	  hadron/propagator/iluprec_s_cprec_t_wilson.out.xml,
	  hadron/propagator/prec_clover-stout3d.bicgstab.out.xml,
	  hadron/propagator/prec_clover-stout3d.mr.out.xml,
	  hadron/propagator/prec_clover-stout3d.out.xml,
	  hadron/propagator/prec_clover.out.xml,
	  hadron/propagator/prec_dwf.out.xml,
	  hadron/propagator/prec_ht_contfrac5d.out.xml,
	  hadron/propagator/prec_ovext.out.xml,
	  hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  hadron/propagator/prec_parwilson.out.xml,
	  hadron/propagator/prec_wilson-smearing.out.xml,
	  hadron/propagator/prec_wilson-twisted.out.xml,
	  hadron/propagator/prec_wilson.ferm.out.xml,
	  hadron/propagator/prec_wilson.out.xml,
	  hadron/propagator/prec_zolo_nef.out.xml,
	  hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  hadron/propagator/unprec_clover.out.xml,
	  hadron/propagator/unprec_dwftransf.out.xml,
	  hadron/propagator/unprec_hamberwu.out.xml,
	  hadron/propagator/unprec_ovext.out.xml,
	  hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  hadron/propagator/unprec_s_cprec_t_wilson.out.xml,
	  hadron/propagator/unprec_wilson.out.xml,
	  hadron/propagator/unprec_zolo_nef.out.xml,
	  hadron/qqq/qqdiquark.out.xml, hadron/qqq/qqq.out.xml,
	  hadron/qqqNucNuc/qqqNucNuc.out.xml,
	  hadron/seqsource/seqsource-baryon.out.xml,
	  hadron/seqsource/seqsource-derivmeson.out.xml,
	  hadron/seqsource/seqsource-meson.out.xml,
	  hadron/seqsource/seqsource-photon.out.xml,
	  hadron/sink_smear/sink-deriv.out.xml,
	  hadron/sink_smear/sink-displace.out.xml,
	  hadron/sink_smear/sink_smearing.out.xml,
	  hadron/static_light/static_light.out.xml,
	  hadron/static_light/static_light_pot.out.xml,
	  hadron/stoch_baryon/stoch_baryon.out.xml,
	  hadron/stoch_meson/stoch_meson.out.xml,
	  hadron_s/make_source/make_source_s.out.xml,
	  hadron_s/propagator/asqtad.out.xml,
	  hadron_s/propagator/klein_gordon.out.xml,
	  hadron_s/sink_smear/sink_smearing_s.out.xml,
	  io/nersc_read_obj/nersc_read_obj.out.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_read_obj/szin_read_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.out.xml,
	  schrfun/schrfun.out.xml, smear/link_smear/link_smear.out.xml: New
	  regression output to match removal of StateInfo from various
	  inline tasks.

2007-08-23 17:28  edwards

	* lib/util/ft/sftmom.cc: Bug fix. Removed some invalid uses of
	  resize within a multi2d.

2007-08-23 16:11  edwards

	* scripts/regenerate.csh: Added a missing quote.

2007-08-23 16:07  edwards

	* scripts/regenerate.csh: Added check of arguments.

2007-08-23 15:02  edwards

	* lib/meas/schrfun/: sfcurcor_w.cc, sfcurcor_w.h, sfpcac_w.cc,
	  sfpcac_w.h: Some code cleanups.

2007-08-23 15:02  edwards

	* lib/meas/inline/: eig/inline_ritz_H_w.cc, eig/inline_ritz_H_w.h,
	  hadron/inline_mesonspec_w.cc, hadron/inline_propagator_ferm_w.cc,
	  hadron/inline_propagator_ferm_w.h, hadron/inline_propagator_w.cc,
	  hadron/inline_propagator_w.h, schrfun/inline_sfpcac_w.cc,
	  schrfun/inline_sfpcac_w.h, smear/inline_link_smear.cc: Cleaned up
	  paths to the XMLGroup objects.

2007-08-23 14:51  tag chroma3-24-2

2007-08-23 14:51  edwards

	* NEWS: Info on 3.24.2

2007-08-23 14:49  edwards

	* aclocal.m4, configure: Induced changes

2007-08-23 14:47  edwards

	* configure.ac: Changed to 3.24.2

2007-08-22 00:14  edwards

	* scripts/test_runners/mpirun_rsh_runner.sh.in: Changed to run on 4
	  cores instead of 2.

2007-08-19 17:26  uid3790

	* mainprogs/main/hmc.cc: Added pops before exit of test on num
	  production updates.

2007-08-19 17:21  uid3790

	* mainprogs/main/hmc.cc: Put in check of start number.

2007-08-16 16:41  edwards

	* lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.cc: Fixed
	  registration name.

2007-08-16 16:38  edwards

	* lib/actions/: ferm/fermbcs/schr_dirich_fermbc_w.cc,
	  ferm/fermbcs/schr_dirich_fermbc_w.h,
	  gauge/gaugebcs/schr_dirich_gaugebc.cc,
	  gauge/gaugebcs/schr_dirich_gaugebc.h,
	  gauge/gaugebcs/schr_sf_gaugebc.cc: Reimplemented the SF Dirichlet
	  BC case in terms like the reset of the non-perturbative BC chain
	  of code, but simply supplying phases.lower=phases.upper=0 .

2007-08-16 14:48  edwards

	* lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.cc: Small
	  cleanups.

2007-08-14 12:13  tag chroma3-24-1

2007-08-14 12:13  edwards

	* NEWS: Info on 3.24.1

2007-08-14 12:09  edwards

	* aclocal.m4, configure: Induced changes

2007-08-14 12:09  edwards

	* configure.ac: Changed to 3.24.1

2007-08-13 14:52  edwards

	* NEWS: Reorged a few dates.

2007-08-13 14:52  edwards

	* NEWS: Small change.

2007-08-13 14:46  edwards

	* README: Changed minimal qdp++ version for chroma 3-24-X and above
	  builds.

2007-08-12 16:35  edwards

	* lib/handle.h: Fix. Bummer, the previous code had a bug.

2007-08-12 15:23  edwards

	* lib/handle.h: Changed cast() to create a pointer then return a
	  crated handle.

2007-08-12 12:07  edwards

	*
	  tests/chroma/hadron/hadron_contract/stoch_condensates/stoch_condensates.metric.xml:
	  Removed some stuff.

2007-08-11 22:12  edwards

	*
	  tests/chroma/hadron/hadron_contract/stoch_condensates/stoch_condensates.metric.xml:
	  Added a metric file for regression testing.

2007-08-11 18:48  edwards

	* tests/chroma/hadron/hadron_contract/: hadron-meson.ini.xml,
	  hadron-meson.metric.xml, hadron-meson.out.xml, regres.pl,
	  meson_2pt/meson_2pt.ini.xml, meson_2pt/meson_2pt.metric.xml,
	  meson_2pt/meson_2pt.out.xml: Moved around regressions into
	  subdirs.

2007-08-11 18:43  edwards

	* tests/chroma/hadron/stoch_condensates/:
	  create_chroma_xml_small_eo.pl, stoch_condensates.ini.xml,
	  stoch_condensates.out.xml: Removed. Turned into a HadroContract
	  measurement.

2007-08-11 18:43  edwards

	* lib/: Makefile.am, meas/hadron/hadron_contract_aggregate.cc,
	  meas/hadron/stoch_cond_cont_w.cc,
	  meas/hadron/stoch_cond_cont_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_stoch_condensates_w.cc,
	  meas/inline/hadron/inline_stoch_condensates_w.h: Removed
	  inline_stoch_condensates and turned it into a HadronContract
	  measurement.

2007-08-11 18:40  edwards

	* tests/chroma/hadron/hadron_contract/stoch_condensates/:
	  create_chroma_xml_small_eo.pl, stoch_condensates.ini.xml,
	  stoch_condensates.out.xml: New hadron_contract regressions.

2007-08-10 21:41  edwards

	* lib/handle.h: Changed operator=() to check on ptr!=p.ptr instead
	  of this != &p .

2007-08-10 17:27  edwards

	* lib/Makefile.am: Added stoch_condensates.{h,cc}

2007-08-10 17:27  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_stoch_condensates_w.cc, inline_stoch_condensates_w.h:
	  Added stochastic estimations of chiral condensates.

2007-08-10 17:26  edwards

	* tests/chroma/hadron/stoch_condensates/:
	  create_chroma_xml_small_eo.pl, stoch_condensates.ini.xml,
	  stoch_condensates.out.xml: New stochastic condensates regression.

2007-08-09 09:38  edwards

	* mainprogs/tests/t_stout_state.cc: Removed orthog_dir from
	  appearing in StoutFermStateParams.

2007-08-08 22:30  edwards

	* lib/actions/ferm/fermstates/: stout_fermstate_params.cc,
	  stout_fermstate_params.h: Removed orthog_dir and now only use
	  smear_in_this_dirP.

2007-08-06 22:26  edwards

	* tests/regres.pl: Re-enabled nersc & szin reader/writer tests.

2007-08-06 17:37  tag chroma3-23-0-patch1-1

2007-08-06 17:37  edwards

	* aclocal.m4, configure: Induced changes

2007-08-06 17:36  edwards

	* configure.ac: Changed to 3.23.0.patch1-1

2007-08-06 17:20  edwards

	* NEWS: Info on 3.23.0-patch1-1

2007-08-06 17:17  edwards

	* lib/util/ft/sftmom.cc: Removed test for momentum averaging and
	  non-zero source offset.  The code works correctly without this
	  test.

2007-08-06 15:18  edwards

	* tests/regres.pl: Turned off szin and nersc regressions for the
	  moment till they are fixed.

2007-08-03 23:34  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c:
	  Cleaned up some more comments. Removed unused variables.

2007-08-03 23:29  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c:
	  Fixed up a comment.

2007-08-01 15:33  edwards

	* lib/util/ft/sftmom.cc: Removed check for origin_offset must be
	  zero in case of momentum averaging.  The check is not needed. The
	  phase of the origin is removed in the correct way no matter
	  whether the phases are added together or not.

2007-07-17 15:16  tag chroma3-24-0

2007-07-17 15:16  uid4709

	* NEWS: Commit before 3.24.0 release

2007-07-09 11:05  bjoo

	* lib/actions/ferm/fermstates/: ferm_createstate_reader_s.cc,
	  ferm_createstate_reader_s.h: Removed the registered thingie

2007-06-30 14:18  edwards

	* tests/chroma/hadron/stoch_group_baryon/Singly_Displaced: Added
	  additional test.

2007-06-26 16:42  bjoo

	* lib/actions/ferm/linop/: clover_term_bagel_clover.cc,
	  clover_term_bagel_clover.h, clover_term_qdp_w.cc: Added LDAGDL
	  inversion to bagellised clover term. Changed reporting of
	  negative diag elements to any. Passes noarch regressions

2007-06-23 17:44  bjoo

	* lib/actions/ferm/linop/: clover_term_qdp_w.cc,
	  clover_term_qdp_w.h: Modded these to go with L D Ldag decomp
	  rather than cholesky. Need to retrofit this also to the
	  bagel_clover_term which uses slightly different data structures
	  for the triang term.

2007-06-21 15:18  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Switched
	  to a subset version of "sft".

2007-06-21 15:18  edwards

	* lib/meas/smear/: deriv_quark_displacement_w.cc,
	  deriv_quark_displacement_w.h, displace.cc, displace.h: Added "E"
	  and "Laplacian" operators.

2007-06-21 14:18  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added subset versions of "sft"
	  function.

2007-06-21 12:06  edwards

	* lib/meas/inline/hadron/: inline_stoch_group_baryon_w.cc,
	  inline_stoch_group_baryon_w.h: Changed CreationOperator to only a
	  single time slice.

2007-06-21 12:05  edwards

	* tests/chroma/hadron/stoch_group_baryon/: Single_Site, regres.pl,
	  stoch_group_baryon.ini.xml, stoch_group_baryon.metric.xml,
	  stoch_group_baryon.out.xml: New input/output format.

2007-06-21 10:03  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Removed
	  some debugging.

2007-06-21 09:32  bjoo

	* lib/actions/ferm/linop/: clover_term_bagel_clover.cc,
	  clover_term_bagel_clover.h: OK! Padded DIAG term to 8 elements
	  and now allocate both the diag and the off_diag with the
	  QDP_allocator in order to ensure good alignment. Size of the Diag
	  array is a mulitple of 16 (8 complexes so at least 16 reals) and
	  the OffDiag itself should have been padded to 16 already too.
	  Seems to work fine on the noarch. Let's see the BG/L

2007-06-20 21:44  edwards

	* lib/meas/inline/hadron/inline_stoch_group_baryon_w.cc: Bug fix.
	  Now runs.

2007-06-20 21:16  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_stoch_group_baryon_w.cc, inline_stoch_group_baryon_w.h:
	  Newer mechanism for dilution.

2007-06-20 11:35  egregory

	* tests/spectrum_s/spectrum_s.metric.xml:  I think I fixed the xml
	  path correctly

2007-06-20 11:35  egregory

	* tests/spectrum_s/spectrum_s.out.xml:
	  some updates

2007-06-20 06:14  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc:
	  fixed problem with setting fuzz width. Also put fuzz width and
	  volume source type in the xml output

2007-06-18 21:43  edwards

	* lib/Makefile.am: Added inline_stoch_group_baryon.{h,cc}

2007-06-18 15:40  edwards

	* lib/meas/inline/hadron/: inline_stoch_group_baryon_w.cc,
	  inline_stoch_group_baryon_w.h: First version of a dedicated
	  measurement for stochastic group baryon operators.

2007-06-18 15:26  bjoo

	* aclocal.m4, configure: Remade the autofiles with automake 1.9.2

2007-06-18 15:24  bjoo

	* acinclude.m4, aclocal.m4, chroma-config.in, configure,
	  configure.ac, lib/Makefile.am, lib/chroma_config_internal.h.in,
	  lib/actions/ferm/linop/clover_term_bagel_clover.cc,
	  lib/actions/ferm/linop/clover_term_bagel_clover.h,
	  lib/actions/ferm/linop/clover_term_w.h,
	  mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am,
	  tests/regres.pl: Checked regressions pass with new QIO. Added
	  autoconf magic for BAGEL Generated Clover Term apply. Passes
	  those regressions too. Robert still has a few things to add and
	  then itll be a new release.

2007-06-16 22:25  bjoo

	* lib/actions/ferm/linop/: clover_term_bagel_clover.cc,
	  clover_term_bagel_clover.h, clover_term_base_w.h,
	  clover_term_qdp_w.cc, clover_term_qdp_w.h,
	  eoprec_clover_extfield_linop_w.cc, eoprec_clover_linop_w.cc,
	  eoprec_slic_linop_w.cc: Moved working BAGEL Clover term
	  implementation and reinstated QDPCloverTerm

2007-06-16 22:12  bjoo

	* lib/actions/ferm/linop/: clover_term_bagel_clover.cc,
	  clover_term_bagel_clover.h: First versions work with noarch

2007-06-14 17:09  bjoo

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Unrolled this to the
	  level of float ops

2007-06-13 10:14  edwards

	* tests/chroma/hadron/hadron_contract/regres.pl: New regression for
	  hadron_contract.

2007-06-13 09:53  edwards

	* tests/regres.pl: New regression test in
	  chroma/hadron/hadron_contract

2007-06-12 14:10  edwards

	* TODO: Updated laundry list.

2007-06-12 13:56  edwards

	* tests/chroma/hadron/hadron_contract/: hadron-meson.ini.xml,
	  hadron-meson.metric.xml, hadron-meson.out.xml: Updated input,
	  output and now a matching metric file.

2007-06-12 13:55  edwards

	* lib/meas/inline/hadron/inline_hadron_contract.cc: Changed around
	  XML group names for output.

2007-06-12 12:11  edwards

	* tests/chroma/hadron/hadron_contract/: hadron-meson.ini.xml,
	  hadron-meson.metric.xml, hadron-meson.out.xml: First version of
	  run code.

2007-06-12 12:10  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added a default constructor.

2007-06-12 12:09  edwards

	* lib/meas/: hadron/hadron_2pt.cc, hadron/hadron_2pt.h,
	  hadron/hadron_contract.cc, hadron/hadron_contract.h,
	  hadron/simple_meson_2pt_w.cc,
	  inline/hadron/inline_hadron_contract.cc: Rearranged the XML
	  output. Now into a XMLBufferWriter instead of a raw string. Also
	  have a XML regression output.

2007-06-12 09:59  edwards

	* mainprogs/tests/: t_dwflinop.cc, t_io.cc, t_neflinop.cc: Changed
	  BinaryReader/Writer to BinaryFileReader/Writer and
	  TextReader/Writer to TextFileReader/Writer.

2007-06-12 09:57  edwards

	* mainprogs/main/wallformfac.cc: Changed BinaryWriter to
	  BinaryFileWriter.

2007-06-12 00:43  edwards

	* lib/util/ft/sftmom.h: Added doxygen comment.

2007-06-12 00:42  edwards

	* lib/util/ft/sftmom.h: Added a param structure and a general
	  constructor.

2007-06-10 23:27  edwards

	* lib/meas/inline/hadron/: inline_hadron_contract.cc,
	  inline_hadron_contract.h: Switched to using array XML group
	  reader.

2007-06-10 23:26  edwards

	* lib/io/: xml_group_reader.cc, xml_group_reader.h: Added
	  multi1d/array reader of GroupXML

2007-06-10 10:49  edwards

	* lib/meas/: hadron/hadron_2pt.cc, hadron/hadron_2pt.h,
	  hadron/hadron_contract.cc, hadron/hadron_contract.h,
	  hadron/hadron_contract_aggregate.cc,
	  hadron/hadron_contract_aggregate.h,
	  hadron/hadron_contract_factory.h, hadron/simple_baryon_2pt_w.cc,
	  hadron/simple_baryon_2pt_w.h, hadron/simple_meson_2pt_w.cc,
	  hadron/simple_meson_2pt_w.h,
	  inline/hadron/inline_hadron_contract.cc,
	  inline/hadron/inline_hadron_contract.h: New version of
	  HadronContract routines

2007-06-10 10:40  edwards

	* lib/io/follana_io_s.cc, lib/io/kyugauge_io.cc,
	  lib/io/kyuqprop_io.cc, lib/io/readcppacs.cc, lib/io/readmilc.cc,
	  lib/io/readszin.cc, lib/io/readszinferm_w.cc,
	  lib/io/readszinqprop_w.cc, lib/io/writemilc.cc,
	  lib/io/writeszin.cc, lib/io/writeszinqprop_w.cc,
	  lib/meas/hadron/BuildingBlocks_w.cc,
	  lib/meas/hadron/group_baryon_operator_w.cc,
	  lib/meas/hadron/hadron_2pt.cc, lib/meas/hadron/hadron_2pt.h,
	  lib/meas/hadron/hadron_2pt_aggregate.cc,
	  lib/meas/hadron/hadron_2pt_aggregate.h,
	  lib/meas/hadron/hadron_2pt_factory.h,
	  lib/meas/hadron/hadron_contract.cc,
	  lib/meas/hadron/hadron_contract.h,
	  lib/meas/hadron/hadron_contract_aggregate.cc,
	  lib/meas/hadron/hadron_contract_aggregate.h,
	  lib/meas/hadron/hadron_contract_factory.h,
	  lib/meas/hadron/simple_meson_2pt_w.cc,
	  lib/meas/hadron/simple_meson_2pt_w.h,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_hadron_2pt_w.cc,
	  lib/meas/inline/hadron/inline_hadron_2pt_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_hadron_contract.cc,
	  lib/meas/inline/hadron/inline_hadron_contract.h,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  mainprogs/main/chroma.cc: Use new QDP classes for
	  Binary{File,Buffer}Reader/Writer and TextFileReader/Writer.

2007-06-10 10:37  edwards

	* lib/Makefile.am: Removed hadron_2pt files and now have
	  hadron_contract.

2007-06-10 10:36  edwards

	* aclocal.m4, configure: Induced changes

2007-06-09 18:18  edwards

	* README: Updated module dependencies.

2007-06-09 18:17  edwards

	* configure.ac: Changed to 3.24.0

2007-06-07 12:53  bjoo

	* mainprogs/tests/t_monomial_force.cc: Update this. Longer
	  calibration loop now and I commented out the taproj etc etc etc

2007-06-07 11:44  bjoo

	* lib/actions/ferm/linop/clover_term_base_w.cc: Fixed a comment

2007-06-07 11:41  bjoo

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  clover_term_base_w.h, eoprec_clover_linop_w.cc,
	  eoprec_clover_linop_w.h: Tuned this a little. I think I saved
	  about 25 percent of the flops in the deriv_loops by combining mu
	  and nu calculations and getting better reuse. However, this ought
	  to have cut comms in a half.

2007-06-06 18:10  bjoo

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  clover_term_base_w.h: Clover term base. modified. Now precompute
	  the trace spin outer products. Points to a place to coalesce code
	  in deriv loops to minimize comms/compute (maximize compute/comms)

2007-06-06 13:33  nilmani

	* PBS/spectrum/scripts/run_qqqdiquark.pl:

	  06/05/07 (Nilmani) : script is modified to delete diquarks from
	  memory and write those to disk. This will clear memory. Please
	  check to clear scratch space so that diquarks can be written
	  there

2007-06-05 15:48  bjoo

	* lib/actions/ferm/linop/: lwldslash_base_array_w.cc,
	  lwldslash_base_w.cc: Recoded this hopefully a little faster

2007-06-01 15:32  edwards

	* tests/chroma/hadron/qqq/: qqdiquark.ini.xml,
	  qqdiquark.metric.xml, qqdiquark.out.xml: Added a QIO_WRITE and
	  READ step for testing.

2007-06-01 14:54  edwards

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: Added read/write for QQDiquarkContract
	  objects.

2007-06-01 10:32  nilmani

	* PBS/spectrum/bin/parse_baryons_qqq.pl: 06/01/07 : Nilmani :  This
	  perl script is for constructing qqq files necessary to run qqq
	  program : run_qqq.pl

2007-06-01 10:28  nilmani

	* PBS/spectrum/scripts/run_qqq.pl: 06/01/07 : Nilmani : This perl
	  script is for running qqq program in usual way (not by
	  constructing diquarks). To run tt needs "qqq_prop" and
	  "parse_baryons_qqq.pl" files

2007-06-01 10:25  nilmani

	* PBS/spectrum/bin/parse_baryons_qqqdiquark.pl: 06/01/07 : Nilmani
	  : This perl script constructs diquark and supply that to run qqq
	  program : run_qqqdiquark.pl

2007-06-01 10:21  nilmani

	* PBS/spectrum/scripts/run_qqqdiquark.pl: 06/01/07 : Nilmani : This
	  perl script is for running qqq program by using diquarks.
	  Necessary files are qqq_prop and parse_baryons_qqqdiquark.pl

2007-05-31 22:42  edwards

	* tests/spectrum_s/spectrum_s.out.xml: Regenerated the regression
	  output.

2007-05-31 16:49  bjoo

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Moved sitesOnNode
	  call outside loop in makeClov

2007-05-31 16:48  bjoo

	* lib/update/heatbath/su2_hb_update.cc: Moved the sitesOnNode out
	  of a loop

2007-05-30 16:21  edwards

	* mainprogs/tests/t_remez.cc: Changed power_den to 2 to match the
	  function that is being tested, namely 1/sqrt(x).

2007-05-30 11:09  egregory

	* lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: added
	  missing Fuzzedsrc-Fuzzedsink connected pseudoscalar singlet
	  propagator

2007-05-25 17:05  bjoo

	* mainprogs/tests/t_monomial_force.cc: Fixed oopses

2007-05-25 15:40  bjoo

	* mainprogs/tests/Makefile.am: t_monomial_force.cc added

2007-05-25 15:40  bjoo

	* tests/t_monomial_force/monomial_test.ini.xml:
	  monomial_test.ini.xml test file for t_monomial_force

2007-05-25 15:38  bjoo

	* mainprogs/tests/t_monomial_force.cc: Times monomial forces,
	  expmat, reunit and taproj

2007-05-24 17:01  bjoo

	* configure: Makefile updates

2007-05-24 16:45  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.cc,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_aniso_sym_force.cc: added unified anisotropic
	  plaq + rectangle action

2007-05-24 15:36  bjoo

	* lib/actions/gauge/gaugeacts/: aniso_sym_shared_functions.cc,
	  aniso_sym_shared_functions.h, aniso_sym_spatial_gaugeact.cc,
	  aniso_sym_spatial_gaugeact.h, aniso_sym_temporal_gaugeact.cc,
	  aniso_sym_temporal_gaugeact.h, rect_gaugeact.cc: Combiner plaq +
	  rect. Is it any faster??

2007-05-22 10:51  bjoo

	* lib/Makefile.am: Makefile.am

2007-05-22 10:50  bjoo

	* tests/t_leapfrog/regres.pl: Added in the regressions

2007-05-22 10:43  bjoo

	* tests/t_leapfrog/:
	  t_leapfrog.aniso_sym_spatial_plus_temporal.metric.xml,
	  t_leapfrog.aniso_sym_temporal.ini.xml,
	  t_leapfrog.aniso_sym_temporal.log.xml,
	  t_leapfrog.aniso_sym_temporal.metric.xml:  More regressions for
	  aniso actions

2007-05-22 10:41  bjoo

	* tests/t_leapfrog/: t_leapfrog.aniso_sym_spatial.ini.xml,
	  t_leapfrog.aniso_sym_spatial.log.xml,
	  t_leapfrog.aniso_sym_spatial.metric.xml,
	  t_leapfrog.aniso_sym_spatial_plus_temporal.ini.xml,
	  t_leapfrog.aniso_sym_spatial_plus_temporal.log.xml: XML Files for
	  regressions

2007-05-22 10:19  bjoo

	* lib/actions/gauge/gaugeacts/: aniso_sym_gaugeact_params.cc,
	  aniso_sym_gaugeact_params.h, aniso_sym_spatial_gaugeact.cc,
	  aniso_sym_spatial_gaugeact.h, aniso_sym_temporal_gaugeact.cc,
	  aniso_sym_temporal_gaugeact.h, gaugeacts_aggregate.cc:
	  Anisotropic Tree level Symanzik improved gauge actions split into
	  spatial and temporal bits

2007-05-21 18:21  bjoo

	* lib/actions/gauge/gaugeacts/: rect_gaugeact.cc, rect_gaugeact.h:
	  Added derivSpatial and derivTemporal as well as spatialS and
	  temporalS

2007-05-18 16:22  bjoo

	* lib/central_tprec_linop.h: Added in one variant of Eisenstat
	  Trick

2007-05-17 11:30  egregory

	* lib/meas/hadron/ks_local_loops.cc: fixed the double-fuzzing in
	  the kilcup trick pseudoscalar loop

2007-05-17 11:29  egregory

	* lib/meas/hadron/pseudoscalar_loops_s.h: fixed the double-fuzzing
	  problem in the kilcup pseudoscalar

2007-05-17 11:29  egregory

	* lib/meas/hadron/pseudoscalar_loops_s.cc: fixed the double-fuzzing
	  in the fuzzed kilcup loop pseudoscalar

2007-05-14 09:41  egregory

	* lib/meas/hadron/ks_local_loops.cc: added fuzzed stochastic
	  connected pseudoscalar correlator for testing

2007-05-14 09:40  egregory

	* lib/meas/hadron/pseudoscalar_stoch_conn_s.cc: added fuzzed
	  stochastic connected pseudoscalar correlator for testing purposes

2007-05-14 09:38  egregory

	* lib/meas/: inline/hadron_s/inline_spectrum_s.cc,
	  hadron/ks_local_loops.h, hadron/pseudoscalar_stoch_conn_s.h:
	  added fuzzed stochastic connected pseudoscalar correlator for
	  testing

2007-05-10 22:32  edwards

	* lib/actions/ferm/invert/invbicgstab.h: Added some doxygen
	  comments.

2007-05-10 13:54  edwards

	* tests/: regres.pl, chroma/hadron_s/spectrum_s/regres.pl,
	  chroma/hadron_s/spectrum_s/spectrum_s.ini.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.metric.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.out.xml: Removed use of
	  inline_spectrum_s from chroma.cc regressions. They are instead
	  only being used by mainprogs/main/spectrum_s.cc

2007-05-10 13:48  edwards

	* lib/meas/inline/hadron_s/hadron_s.h: Turned back on the include
	  of inline_spectrum_s.h

2007-05-10 13:47  edwards

	* lib/Makefile.am: Added back in inline_spectrum_s.{h,cc}

2007-05-10 13:46  edwards

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: Oops, this file
	  really is being used. The confusion on my part is that it is used
	  in mainprogs/main/spectrum_s.cc, but not as an inline in
	  chroma.cc

2007-05-10 13:43  edwards

	* lib/meas/inline/hadron_s/hadron_s.h: Removed inline spectrum_s

2007-05-09 13:21  edwards

	* aclocal.m4, configure: Induced changes

2007-05-09 13:19  edwards

	* lib/: Makefile.am, meas/hadron/baryon_2pt_w.cc,
	  meas/hadron/baryon_2pt_w.h, meas/hadron/hadron_2pt.cc,
	  meas/hadron/hadron_2pt.h, meas/hadron/hadron_2pt_aggregate.cc,
	  meas/hadron/hadron_2pt_aggregate.h,
	  meas/hadron/hadron_2pt_factory.h,
	  meas/hadron/simple_baryon_2pt_w.cc,
	  meas/hadron/simple_baryon_2pt_w.h,
	  meas/hadron/simple_meson_2pt_w.cc,
	  meas/hadron/simple_meson_2pt_w.h,
	  meas/inline/hadron/inline_hadron_2pt_w.cc,
	  meas/inline/hadron/inline_hadron_2pt_w.h,
	  meas/inline/hadron_s/inline_hadron_aggregate_s.cc,
	  meas/inline/hadron_s/inline_spectrum_s.h: Added hadron 2pt
	  routines.

2007-05-09 08:52  mcneile

	* lib/Makefile.am: I have added source code for HISQ.

2007-05-09 08:51  mcneile

	* mainprogs/tests/t_propagator_s.cc: Wrapper for HISQ code.

2007-05-09 08:47  mcneile

	* lib/actions/ferm/linop/: fat7_links_s.cc, improvement_terms_s.h:
	  I have added additional code for the HISQ inverter.

2007-05-09 08:45  mcneile

	* lib/actions/ferm/qprop/: hisq_qprop.cc, hisq_qprop.h: First pass
	  at adding hisq code to chroma.

2007-05-09 08:43  mcneile

	* lib/actions/ferm/fermacts/: hisq_fermact_params_s.cc,
	  hisq_fermact_params_s.h, hisq_fermact_s.cc, hisq_fermact_s.h:
	  First pass at adding HISQ to Chroma.

2007-05-03 18:42  kostas

	* lib/Makefile.am: link in NPR point props

2007-05-03 18:41  kostas

	* lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: npr
	  inline (point props)

2007-05-03 07:29  edwards

	* tests/regres.pl: Took out inline_spectrum_s

2007-05-01 14:48  dgr

	* PBS/spectrum/bin/parse_diquark.pl: fixed bug in parse_diquark

2007-05-01 11:27  bjoo

	* lib/actions/ferm/invert/invmr.cc,
	  lib/actions/ferm/invert/invmr.h,
	  lib/actions/ferm/invert/syssolver_linop_mr.h,
	  tests/chroma/hadron/propagator/prec_clover-stout3d.mr.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d.mr.metric.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d.mr.out.xml,
	  tests/chroma/hadron/propagator/regres.pl: Added regressions for
	  MR and BiCGStab. Sadly inline_spectrum_s is not working again

2007-05-01 11:06  bjoo

	* lib/Makefile.am,
	  tests/chroma/hadron/propagator/prec_clover-stout3d.bicgstab.metric.xml,
	  tests/chroma/hadron/propagator/prec_clover-stout3d.bicgstab.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.bicgstab.metric.xml:
	  Added BiCGStab Prop calculation

2007-05-01 10:54  bjoo

	* tests/chroma/hadron/propagator/:
	  prec_clover-stout3d.bicgstab.ini.xml, regres.pl: BICGSTAB Prop

2007-05-01 10:47  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_wilson.bicgstab.ini.xml,
	  t_leapfrog.prec_wilson.bicgstab.log.xml: Wilson With BICGSTAB

2007-05-01 10:39  bjoo

	* lib/actions/ferm/invert/: invmr.cc, invmr.h,
	  syssolver_linop_aggregate.cc, syssolver_linop_mr.h,
	  syssolver_mdagm_aggregate.cc, syssolver_mdagm_bicgstab.cc,
	  syssolver_mdagm_bicgstab.h, syssolver_mr_params.cc,
	  syssolver_mr_params.h: Added MdagM BiCGStab Solver

2007-05-01 09:43  egregory

	* tests/spectrum_s/spectrum_s.out.xml: fixed double baryon
	  measurement problem

2007-05-01 09:08  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: made fix so local
	  baryons arent run twice

2007-05-01 09:07  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc: OK !
	  Makefiles etc.

2007-05-01 08:54  bjoo

	* tests/chroma/hadron/propagator/:
	  iluprec_s_cprec_t_clover.bicgstab.ini.xml,
	  iluprec_s_cprec_t_clover.bicgstab.metric.xml,
	  iluprec_s_cprec_t_clover.bicgstab.out.xml: Metric files for Tprec
	  ILU BiCGStab

2007-05-01 08:50  bjoo

	* lib/actions/ferm/invert/: invbicgstab_array.cc,
	  invbicgstab_array.h: Oopsie

2007-05-01 08:47  bjoo

	* lib/actions/ferm/invert/: invbicgstab.cc, invbicgstab.h,
	  invbicgstab_array.cc, invbicgstab_array.h,
	  syssolver_bicgstab_params.cc, syssolver_bicgstab_params.h,
	  syssolver_linop_bicgstab.cc, syssolver_linop_bicgstab.h: Added
	  syssolver_bicgstab

2007-04-19 10:26  tag chroma3-23-0

2007-04-19 10:26  edwards

	* NEWS: Info on 3.23.0

2007-04-19 10:23  edwards

	* aclocal.m4, configure: Induced changes

2007-04-19 10:23  edwards

	* configure.ac: Changed to 3.23.0

2007-04-19 10:13  edwards

	* tests/chroma/hadron/hadspec/hadspec.out.xml: New output format.

2007-04-18 17:55  edwards

	* lib/meas/inline/hadron/inline_hadspec_w.cc: The number of baryons
	  has changed.

2007-04-18 17:53  edwards

	* lib/meas/hadron/barhqlq_w.cc: Added the negative parity nucleon.

2007-04-17 22:32  edwards

	* lib/meas/inline/hadron/: inline_bar3ptfn_w.h,
	  inline_building_blocks_w.h, inline_hadron_2pt_w.cc,
	  inline_hadron_2pt_w.h, inline_hadspec_w.h,
	  inline_make_source_ferm_w.h, inline_make_source_w.h,
	  inline_mesonspec_w.h, inline_mres_w.h,
	  inline_multi_propagator_w.h, inline_multipole_w.h,
	  inline_noisy_building_blocks_w.h, inline_npr_vertex_w.h,
	  inline_npr_w.h, inline_propagator_ferm_w.h, inline_qpropadd_w.h,
	  inline_qpropqio_w.h, inline_qqbar_w.h, inline_qqqNucNuc_w.h,
	  inline_sink_smear_w.h, inline_spectrumQll.h, inline_spectrum_w.h,
	  inline_stag_to_wils.h, inline_static_light_spec_w.h: Fixed
	  doxygen comments.

2007-04-16 23:13  edwards

	* lib/: actions/ferm/fermacts/bigfloat.h,
	  actions/ferm/fermacts/fermacts.h, actions/ferm/fermacts/remez.h,
	  actions/ferm/fermacts/remez_coeff.h,
	  actions/ferm/fermacts/remez_gmp.cc,
	  actions/ferm/fermacts/remez_gmp.h,
	  actions/ferm/fermacts/remez_stub.h,
	  update/molecdyn/monomial/bigfloat.h,
	  update/molecdyn/monomial/genapprox.cc,
	  update/molecdyn/monomial/genapprox.h,
	  update/molecdyn/monomial/monomial.h,
	  update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  update/molecdyn/monomial/remez.h,
	  update/molecdyn/monomial/remez_coeff.h,
	  update/molecdyn/monomial/remez_gmp.cc,
	  update/molecdyn/monomial/remez_gmp.h,
	  update/molecdyn/monomial/remez_stub.h: Moved the bigfloat and
	  remez files from the fermacts dir to the monomial dir. This is
	  anticipation of further factory methods.

2007-04-16 23:11  edwards

	* lib/Makefile.am: Moved around the bigfloat and remez files from
	  the fermacts dir to the monomial dir. The fermacts dir is way too
	  full. The monomial dir is the right place for this stuff.

2007-04-16 20:56  edwards

	* aclocal.m4, configure: Induced changes

2007-04-16 20:52  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes

2007-04-16 11:55  tag chroma3-22-10

2007-04-16 11:55  bjoo

	* chroma-config.in: Fixed an oops in chroma-config.in

2007-04-16 11:49  bjoo

	* aclocal.m4, configure, lib/Makefile.am, mainprogs/main/hmc.cc,
	  tests/hmc/hmc.prec_wilson.ini.xml,
	  tests/hmc/hmc.prec_wilson.log.xml,
	  tests/hmc/hmc.prec_wilson.out.xml,
	  tests/hmc/hmc.prec_wilson_repro.ini.xml,
	  tests/hmc/hmc.prec_wilson_repro.log.xml,
	  tests/hmc/hmc.prec_wilson_repro.metric.xml,
	  tests/hmc/hmc.prec_wilson_repro.out.xml, tests/hmc/regres.pl: OK
	  I fixed the problem with the headers I think and added repro
	  testing to HMC. NERSC reading regression fails

2007-04-14 16:06  edwards

	* tests/chroma/hadron_s/spectrum_s/: spectrum_s.metric.xml,
	  spectrum_s.out.xml: Updated to new output.

2007-04-14 16:00  edwards

	* tests/chroma/hadron_s/spectrum_s/: spectrum_s.ini.xml,
	  spectrum_s.out.xml: fixed to new form.

2007-04-14 15:48  edwards

	* tests/spectrum_s/spectrum_s.metric.xml: Fixed so xmldiff doesn't
	  complain.

2007-04-11 18:10  egregory

	* tests/spectrum_s/spectrum_s.ini.xml: new fuzzed operator stuff is
	  implemented

2007-04-11 18:09  egregory

	* tests/spectrum_s/spectrum_s.out.xml: new fuzzed operator stuff
	  implimented

2007-04-11 17:51  egregory

	* lib/meas/hadron/scalar_loops_s.cc: fixed that unordered set
	  thingie

2007-04-11 17:44  egregory

	* lib/meas/hadron/scalar_loops_s.cc: put in fuzzed scalar loops

2007-04-11 11:29  egregory

	* lib/meas/hadron/pion_sing_s.h: added fuzzed operators

2007-04-11 11:23  egregory

	* lib/meas/hadron/: pseudoscalar_loops_s.cc,
	  pseudoscalar_loops_s.h, scalar_loops_s.h: added fuzzed loops

2007-04-11 11:06  egregory

	* lib/meas/hadron/: loops_s.h, ks_local_loops.cc: added fuzzed
	  loops

2007-04-11 11:05  egregory

	* lib/meas/hadron/pion_sing_s.cc: added fuzzed scalar loops

2007-04-11 10:58  egregory

	* lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: smeared
	  operators for the pseudoscalar singlet meson

2007-04-11 10:57  egregory

	* lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc: changes
	  for variational meson spectroscopy

2007-04-11 10:57  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: changes and fixes
	  related to variational meson spectroscopy`

2007-04-11 10:44  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: added and fixed
	  some variational meson stuff

2007-04-11 00:55  juge

	* lib/meas/hadron/: baryon_operator.h, group_baryon_operator_w.cc,
	  group_baryon_operator_w.h, simple_baryon_operator_w.h: Removed
	  the extra time loop and added some routines for compatibility.

2007-04-10 23:44  edwards

	* lib/Makefile.am: Added MR support for multimass and system
	  solvers.

2007-04-10 23:44  edwards

	* lib/lmdagm.h: Added some doxygen comments and indenting.

2007-04-10 23:43  edwards

	* lib/ldag.h: First version of a A^dag wrapper.

2007-04-10 23:42  edwards

	* lib/: actions/ferm/qprop/quarkprop4_s.cc,
	  actions/ferm/qprop/quarkprop4_w.cc, fermact.h,
	  stagtype_fermact_s.h, wilstype_fermact_w.h: Added mInvLinOp
	  functions.

2007-04-10 23:42  edwards

	* lib/actions/ferm/invert/: syssolver_linop_mr.cc,
	  syssolver_linop_mr.h, syssolver_mdagm_mr.cc,
	  syssolver_mdagm_mr.h, syssolver_mr_params.cc,
	  syssolver_mr_params.h: First versions of system solvers using MR.

2007-04-10 23:41  edwards

	* lib/actions/ferm/invert/: multi_syssolver_linop.h,
	  multi_syssolver_linop_aggregate.cc,
	  multi_syssolver_linop_aggregate.h,
	  multi_syssolver_linop_factory.h, multi_syssolver_linop_mr.cc,
	  multi_syssolver_linop_mr.h, multi_syssolver_mr_params.cc,
	  multi_syssolver_mr_params.h: First versions of multimass linop
	  solvers.

2007-04-10 23:41  edwards

	* lib/actions/ferm/invert/: invmr.cc, invmr.h: Updated to new API.

2007-04-10 23:40  edwards

	* lib/actions/ferm/invert/: minvmr.cc, minvmr.h, minvmr_array.cc:
	  First versions.

2007-04-09 14:41  bjoo

	* lib/meas/inline/: make_xml_file.cc, glue/inline_plaquette.cc,
	  glue/inline_plaquette.h: Now affix traj number to xmlfile unless
	  it is 0

2007-04-04 16:58  bjoo

	* lib/actions/ferm/linop/clover_term_base_w.cc: clover force
	  slightly rearranged.

2007-03-30 10:09  edwards

	* tests/hmc/: hmc.prec_wilson.log.xml, hmc.prec_wilson.out.xml:
	  Updates.

2007-03-30 10:08  edwards

	* tests/t_leapfrog/: t_leapfrog.aniso_spectrum.log.xml,
	  t_leapfrog.fixed_X_action_stout.log.xml,
	  t_leapfrog.lw.sfnonpt.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  t_leapfrog.prec_1flav_dwf.log.xml,
	  t_leapfrog.prec_1flav_wilson.log.xml,
	  t_leapfrog.prec_2flav_clover.log.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.log.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.log.xml,
	  t_leapfrog.prec_clover_stout.log.xml,
	  t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  t_leapfrog.prec_parwilson.log.xml,
	  t_leapfrog.prec_wilson.log.xml, t_leapfrog.rect_gaugeact.log.xml,
	  t_leapfrog.rect_gaugeact_1.log.xml,
	  t_leapfrog.rect_gaugeact_aniso.log.xml,
	  t_leapfrog.rect_gaugeact_c1t0.log.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.log.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.log.xml,
	  t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.log.xml,
	  t_leapfrog.unprec_wilson.log.xml,
	  t_leapfrog.wilson_gaugeact.log.xml,
	  t_leapfrog.wilson_gaugeact_aniso_mom.log.xml,
	  t_leapfrog.wilson_gaugeact_st.log.xml: Changed tag group from
	  "n_count" to "Forces".

2007-03-29 15:35  edwards

	* lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h:
	  Fixed name of group - renamed to "Forces".

2007-03-23 16:41  tag choma3-22-9

2007-03-23 16:41  bjoo

	* lib/update/molecdyn/integrator/lcm_toplevel_integrator.cc,
	  tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.log.xml:
	  Changed convention to set the dt factor to 1 over xi_mom

2007-03-23 16:21  bjoo

	* lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.h,
	  lib/update/molecdyn/integrator/lcm_toplevel_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_toplevel_integrator.h,
	  tests/regres.pl, tests/hmc/hmc.prec_wilson.log.xml,
	  tests/t_leapfrog/regres.pl,
	  tests/t_leapfrog/t_leapfrog.aniso_spectrum.log.xml,
	  tests/t_leapfrog/t_leapfrog.fixed_X_action_stout.log.xml,
	  tests/t_leapfrog/t_leapfrog.lw.sfnonpt.log.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.sfnonpt.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_clover_stout.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch5d_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_parwilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_1.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_aniso.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_c1t0.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_omit2linkT.log.xml,
	  tests/t_leapfrog/t_leapfrog.two_plaq_spatial_gaugeact.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_clover.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch5d_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.wilson_gaugeact.log.xml,
	  tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.ini.xml,
	  tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.log.xml,
	  tests/t_leapfrog/t_leapfrog.wilson_gaugeact_aniso_mom.metric.xml,
	  tests/t_leapfrog/t_leapfrog.wilson_gaugeact_st.log.xml: Added
	  anisotropic momenta. This necessitated having to recheck all the
	  log files

2007-03-23 12:01  bjoo

	* lib/: actions/gauge/gaugeacts/plaq_gaugeact.cc,
	  update/molecdyn/monomial/force_monitors.cc: Converted force units
	  to those of Jansen et al. Added taproj to force monitoring

2007-03-22 16:22  bjoo

	* aclocal.m4, configure: Remade Makefile.ins on qcdi machine

2007-03-22 16:20  bjoo

	* lib/Makefile.am, tests/regres.pl: Added spatial and temporal
	  plaquette actions

2007-03-22 15:52  bjoo

	* lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc,
	  plaq_gaugeact.cc, spatial_wilson_gaugeact.h,
	  wilson_gaugeact_params.cc, wilson_gaugeact_params.h: Appears to
	  work. I have to check the forces tho...

2007-03-22 15:51  bjoo

	* tests/t_leapfrog/: regres.pl, t_leapfrog.wilson_gaugeact.ini.xml,
	  t_leapfrog.wilson_gaugeact.log.xml,
	  t_leapfrog.wilson_gaugeact.metric.xml,
	  t_leapfrog.wilson_gaugeact_st.ini.xml,
	  t_leapfrog.wilson_gaugeact_st.log.xml,
	  t_leapfrog.wilson_gaugeact_st.metric.xml: Added WIlson gaugeact
	  and split temporal wilson gaugeacts

2007-03-22 15:06  bjoo

	* lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h,
	  spatial_wilson_gaugeact.cc, spatial_wilson_gaugeact.h,
	  temporal_wilson_gaugeact.cc, temporal_wilson_gaugeact.h,
	  wilson_gaugeact.cc, wilson_gaugeact.h, wilson_gaugeact_params.cc,
	  wilson_gaugeact_params.h: INitial cut

2007-03-22 13:39  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/update/molecdyn/monomial/eoprec_logdet_ee_monomial_w.h,
	  lib/update/molecdyn/monomial/force_calc.cc,
	  lib/update/molecdyn/monomial/force_calc.h,
	  lib/update/molecdyn/monomial/force_monitors.cc,
	  lib/update/molecdyn/monomial/force_monitors.h,
	  lib/update/molecdyn/monomial/gauge_monomial.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h,
	  tests/regres.pl, tests/hmc/hmc.prec_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.aniso_spectrum.log.xml,
	  tests/t_leapfrog/t_leapfrog.lw.sfnonpt.log.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.sfnonpt.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_clover_stout.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch5d_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_parwilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_1.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_aniso.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_c1t0.log.xml,
	  tests/t_leapfrog/t_leapfrog.rect_gaugeact_omit2linkT.log.xml,
	  tests/t_leapfrog/t_leapfrog.two_plaq_spatial_gaugeact.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_clover.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch5d_dwf.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.log.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.log.xml: Reworked Force
	  monitoring - had to update regressions. latter part was
	  annoyingly laborious as I had to check some through

2007-03-20 09:44  tag chroma3-22-8

2007-03-20 09:44  bjoo

	* lib/actions/gauge/gaugeacts/wilson_gaugeact.h: Added fix to
	  wilson_gaugeact for Jacques. Regressions pass on parscalar
	  single. Release candidate

2007-03-18 17:59  edwards

	* lib/meas/inline/glue/: inline_wilslp.cc, inline_wilslp.h: Added a
	  xml_file indirection.

2007-03-18 17:58  edwards

	* lib/meas/inline/hadron/inline_propagator_w.h: Changed doxygen
	  comment.

2007-03-16 18:08  bjoo

	* lib/actions/ferm/linop/eo3dprec_s_cprec_t_clover_linop_w.h:
	  Oopsie

2007-03-16 17:23  bjoo

	* lib/actions/ferm/linop/eo3dprec_s_cprec_t_clover_linop_w.h: Fixed
	  some oopsies

2007-03-16 14:25  bjoo

	* lib/actions/ferm/linop/: clover_term_base_w.h,
	  clover_term_qdp_w.cc, clover_term_qdp_w.h: Added ApplySite()
	  function

2007-03-16 14:23  bjoo

	* lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/Makefile.am, mainprogs/tests/t_temp_prec.cc: Schur
	  Preconditioned Clover Ferm Act

2007-03-16 14:22  bjoo

	* lib/actions/ferm/linop/: eo3dprec_s_cprec_t_clover_linop_w.cc,
	  eo3dprec_s_cprec_t_clover_linop_w.h: Schur preconditioned clover
	  lin op. Uses Inner CG as a quick hack. Fix this later if worth
	  it.

2007-03-16 14:21  bjoo

	* tests/chroma/hadron/propagator/:
	  eo3dprec_s_cprec_t_clover.ini.xml,
	  eo3dprec_s_cprec_t_clover.metric.xml,
	  eo3dprec_s_cprec_t_clover.out.xml: Test files for Schur
	  preconditioned and Temp Preconditioned clover operator

2007-03-15 09:35  edwards

	* lib/update/molecdyn/monomial/force_calc.cc: Helper function for
	  force calculations.

2007-03-15 00:48  edwards

	* lib/update/molecdyn/monomial/force_calc.h: Replaced simple
	  norm2(F) with a forceCalc() call. Now write out more diagnostic
	  forces.

2007-03-15 00:23  edwards

	* lib/update/molecdyn/monomial/force_calc.h: Helper function for
	  calculating forces.

2007-03-14 23:50  edwards

	* README: Updated dependencies.

2007-03-14 14:21  bjoo

	* tests/chroma/hadron_s/spectrum_s/regres.pl: Renamed spectrum_s to
	  inline spectrum_s

2007-03-14 12:01  bjoo

	* scripts/test_runners/load_leveller_queue.sh.in: Submit jobs to
	  BGL load leveller queue

2007-03-08 16:02  bjoo

	* scripts/queue_chroma_regressions.pl: Typo

2007-03-08 15:59  bjoo

	* scripts/queue_chroma_regressions.pl: This can just queue jobs if
	  a good queue script is given

2007-03-08 15:52  bjoo

	* scripts/check_regres_runner.pl: Check Regres Runner can now cope
	  with .log files too

2007-03-08 09:18  bjoo

	* aclocal.m4, configure, configure.ac,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc: Remade on qcdi01 with
	  automake-1-9-2. Added --enable-bagel-wilson-dslash-sloppy option
	  to allow experimantation without having to hack the code

2007-03-06 19:02  bjoo

	* aclocal.m4, chroma-config.in, configure, configure.ac,
	  lib/Makefile.am, lib/chroma_config_internal.h.in,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/init/chroma_init.cc, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_lwldslash_array.cc,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure,
	  other_libs/intel_sse_wilson_dslash/configure.ac,
	  other_libs/intel_sse_wilson_dslash/examples/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/include/sse_config_internal.h.in,
	  other_libs/intel_sse_wilson_dslash/lib/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c:
	  QMT Threads in 32 bit parscalar dslash

2007-03-05 16:10  tag chroma3-22-7

2007-03-05 16:10  bjoo

	* NEWS, aclocal.m4: ALl the rest

2007-03-05 16:10  bjoo

	* configure: Configure

2007-03-05 16:05  bjoo

	* configure.ac: Version bumped

2007-03-05 15:09  bjoo

	* lib/: singleton.h, actions/ferm/linop/lwldslash_array_pab_w.h,
	  actions/ferm/linop/lwldslash_w_pab.cc: BGL fixes hopefully done

2007-03-05 15:02  bjoo

	* configure.ac, configure, aclocal.m4, lib/singleton.h,
	  lib/actions/ferm/fermacts/eoprec_clover_extfield_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_slic_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/linop/eoprec_clover_extfield_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_slic_linop_w.h,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc, tests/regres.pl: BGL
	  fixes

2007-03-05 15:01  bjoo

	* other_libs/cg-dwf/: Makefile.am, aclocal.m4, configure: Made
	  t_dwf_cg2 an extra program so it is not built by default
	  hopefully

2007-03-05 14:50  bjoo

	* aclocal.m4: Makefile.ins

2007-03-05 14:49  bjoo

	* configure: Configure.ac

2007-03-05 14:36  bjoo

	* configure, configure.ac, lib/chroma_config_internal.h.in,
	  lib/actions/ferm/invert/syssolver_linop_cg.h,
	  lib/actions/ferm/invert/syssolver_linop_cg_array.h,
	  lib/actions/ferm/invert/syssolver_linop_cg_timing.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_timing.h,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_lowmem_w.h,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: Added
	  fixes so that checks pass

2007-03-05 11:13  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/invert/syssolver_cg_params.cc,
	  lib/actions/ferm/invert/syssolver_cg_params.h,
	  lib/actions/ferm/invert/syssolver_cgdwf_params.cc,
	  lib/actions/ferm/invert/syssolver_cgdwf_params.h,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_lowmem_w.h:
	  Allows switching CG-DWF USage styles alpha verision- untested

2007-03-05 11:08  bjoo

	* lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h:
	  Replaced the origina version

2007-03-02 15:59  bjoo

	* lib/actions/ferm/invert/: syssolver_cgdwf_params.cc,
	  syssolver_cgdwf_params.h: Oopsie

2007-03-02 15:58  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h:
	  Reworked the CG-DWF solver so that only one solver is in scope at
	  any one time. This should cut down on memory costs. Also just for
	  this - CGDWF - solver, I added separate residua for the single
	  and double precision solve

2007-03-02 13:25  bjoo

	* lib/actions/ferm/linop/lwldslash_w_pab.h: Ok this is now
	  supposedly fixed

2007-03-02 12:17  bjoo

	* scripts/test_runners/cobalt_runner.sh.in: Now uses SWOA

2007-03-01 15:13  dgr

	* PBS/spectrum/bin/: parse_diquark.pl, parse_group.pl: parse_group
	  pulls out the needed Dirac indices in a given qqq parse_diquark
	  attempts to identify common diquarks in a qqq

2007-03-01 11:02  bjoo

	* configure.ac: Modified configure.ac

2007-03-01 11:00  bjoo

	* scripts/test_runners/cobalt_runner.sh.in: Added a cobalt testcase
	  runner for MIT BG/L

2007-03-01 09:53  bjoo

	* lib/actions/ferm/linop/lwldslash_w_pab.h: Activated
	  CHROMA_WFM_NO_END. It allowed the BGL Clover Test to succeed

2007-02-28 16:32  bjoo

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_w_pab.cc, lwldslash_w_pab.h: Tried to clean up the
	  refcounting in this.... AGAIN

2007-02-27 22:28  edwards

	* lib/meas/hadron/barcomp_diquark_w.cc: Bug fix. Needed to reverse
	  ordering of spin indices on qc_3.

2007-02-27 22:28  edwards

	* lib/meas/hadron/diquark_w.cc: Small changes. Try to avoid some
	  copy constructor calls.

2007-02-27 16:39  tag chroma3-22-6

2007-02-27 16:39  bjoo

	* aclocal.m4, configure: Remade autofiles for release. Now needs
	  qdp v1.22.0 to function. QCDOC Branch potentially unstable (in
	  BAGEL Dslash wrapper)

2007-02-27 15:28  bjoo

	* NEWS, configure, configure.ac, lib/Makefile.am,
	  lib/central_tprec_linop.h,
	  lib/eo3dprec_s_cprec_t_wilstype_fermact_w.h,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/eo3dprec_s_cprec_t_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/eo3dprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc,
	  mainprogs/tests/t_temp_prec.cc, tests/regres.pl,
	  tests/chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.ini.xml,
	  tests/chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.metric.xml,
	  tests/chroma/hadron/propagator/eo3dprec_s_cprec_t_wilson.out.xml:
	  Pre versioning commit

2007-02-25 21:12  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Added QQDiquark_t.

2007-02-25 21:12  edwards

	* tests/chroma/hadron/qqq/qqdiquark.metric.xml: Fixed test.

2007-02-25 21:11  edwards

	* scripts/run_chroma_xmldiff.pl: Added printing of times.

2007-02-25 17:49  edwards

	* tests/chroma/hadron/qqq/: qqdiquark.metric.xml, regres.pl: New
	  regression tests.

2007-02-25 17:42  edwards

	* tests/chroma/hadron/qqq/: qqdiquark.ini.xml,
	  qqdiquark.metric.xml, qqdiquark.out.xml: First versions.

2007-02-25 17:42  edwards

	* tests/chroma/hadron/qqq/: qqq.ini.xml, qqq.out.xml: New input and
	  output formats.

2007-02-25 17:39  edwards

	* lib/meas/: hadron/diquark_w.cc, hadron/diquark_w.h,
	  inline/eig/inline_ritz_H_w.cc, inline/hadron/inline_diquark_w.cc,
	  inline/hadron/inline_hadron_aggregate.cc,
	  inline/hadron/inline_make_source_ferm_w.cc,
	  inline/hadron/inline_make_source_w.cc,
	  inline/hadron/inline_multi_propagator_w.cc,
	  inline/hadron/inline_polar_source_w.cc,
	  inline/hadron/inline_propagator_ferm_w.cc,
	  inline/hadron/inline_propagator_w.cc,
	  inline/hadron/inline_qqbar_w.cc, inline/hadron/inline_qqq_w.cc,
	  inline/hadron/inline_seqsource_w.cc,
	  inline/hadron/inline_sink_smear_w.cc,
	  inline/hadron/inline_stag_to_wils.cc,
	  inline/hadron_s/inline_make_source_s.cc,
	  inline/hadron_s/inline_propagator_s.cc,
	  inline/hadron_s/inline_sink_smear_s.cc: Replaced id in header
	  with a proper unique id.

2007-02-25 17:39  edwards

	* lib/meas/: hadron/barcomp_diquark_w.cc,
	  hadron/barcomp_diquark_w.h,
	  inline/hadron/inline_qqq_diquark_w.cc,
	  inline/hadron/inline_qqq_diquark_w.h: Construct a QQQ object from
	  a diquark and a prop.

2007-02-25 17:37  edwards

	* lib/util/info/unique_id.cc: Fixed doxygen comment.

2007-02-25 17:37  edwards

	* lib/util/info/proginfo.cc: Indented some.

2007-02-25 17:36  edwards

	* lib/util/info/: unique_id.cc, unique_id.h: Generates a unique id.

2007-02-25 17:35  edwards

	* lib/Makefile.am: Added diquark routines and a new  unique_id.

2007-02-23 16:38  bjoo

	* aclocal.m4, configure,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_qdpopt_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_w.cc,
	  lib/actions/ferm/linop/lwldslash_qdpopt_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.cc, tests/regres.pl: Fixes
	  exposed by not using level 3 dslash

2007-02-22 16:11  bjoo

	* lib/central_tprec_linop.h, lib/eo_linop.h,
	  lib/eoprec_constdet_linop.h, lib/eoprec_linop.h,
	  lib/eoprec_logdet_linop.h, lib/fermbc.h, lib/gaugeact.h,
	  lib/linearop.h, lib/lmdagm.h, lib/syssolver.h,
	  lib/teoprec_linop.h, lib/teoprec_logdet_linop.h,
	  lib/tprec_linop.h, lib/tprec_logdet_linop.h,
	  lib/actions/ferm/fermacts/eoprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermbcs/periodic_fermbc.h,
	  lib/actions/ferm/fermbcs/schroedinger_fermbc_w.h,
	  lib/actions/ferm/fermbcs/simple_fermbc.h,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.h,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.cc,
	  lib/actions/ferm/invert/inv_minres_array.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.cc,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/invert/invcg2_timing_hacks.cc,
	  lib/actions/ferm/invert/invmr.cc,
	  lib/actions/ferm/invert/minv_rel_cg.cc,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/invert/minvcg_array.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/syssolver_linop_cg.h,
	  lib/actions/ferm/invert/syssolver_linop_cg_array.h,
	  lib/actions/ferm/invert/syssolver_linop_cg_timing.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_timing.h,
	  lib/actions/ferm/invert/syssolver_polyprec_cg.h,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/asqtad_mdagm_s.h,
	  lib/actions/ferm/linop/clover_term_base_w.h,
	  lib/actions/ferm/linop/eoprec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/lDeltaLs_w.h,
	  lib/actions/ferm/linop/lg5Rherm_w.h,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.h,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/lgherm_w.h,
	  lib/actions/ferm/linop/llincomb.h,
	  lib/actions/ferm/linop/lopscl.h,
	  lib/actions/ferm/linop/lovddag_double_pass_w.h,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlap_double_pass_w.h,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_base_array_w.h,
	  lib/actions/ferm/linop/lwldslash_base_w.h,
	  lib/actions/ferm/linop/overlapbu_linop_w.h,
	  lib/actions/ferm/linop/polprec_op.h,
	  lib/actions/ferm/linop/polynomial_op.h,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h,
	  lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h,
	  lib/actions/ferm/qprop/eoprec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/eoprec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/eoprec_staggered_qprop.h,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/gauge/gaugeacts/aniso_spectrum_gaugeact.h,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.h,
	  lib/meas/eig/eig_spec.cc, lib/meas/eig/eig_spec_array.cc,
	  lib/meas/eig/gramschm.cc, lib/meas/eig/gramschm.h,
	  lib/meas/eig/gramschm_array.cc, lib/meas/eig/gramschm_array.h,
	  lib/meas/eig/ritz.cc, lib/meas/eig/ritz_array.cc,
	  lib/meas/eig/sn_jacob.cc, lib/meas/eig/sn_jacob.h,
	  lib/meas/eig/sn_jacob_array.cc, lib/meas/eig/sn_jacob_array.h,
	  lib/meas/hadron/barQll_w.cc, lib/meas/hadron/baryon_s.cc,
	  lib/meas/hadron/loops_w.cc, lib/meas/hadron/pion_local_s.cc,
	  lib/meas/hadron/pion_sing_s.cc, lib/meas/hadron/pions_s.cc,
	  lib/meas/hadron/pseudoscalar_loops_s.cc,
	  lib/meas/hadron/pseudoscalar_stoch_conn_s.cc,
	  lib/meas/hadron/qqbar_w.cc, lib/meas/hadron/scalar_loops_s.cc,
	  lib/meas/hadron/stag_scalars_s.cc,
	  lib/meas/hadron/vector_meson_s.cc,
	  lib/meas/inline/eig/inline_ritz_H_w.cc,
	  lib/update/heatbath/mciter32.cc, lib/update/heatbath/mciter32.h,
	  lib/update/heatbath/su2_hb_update.cc,
	  lib/update/heatbath/su2_hb_update.h,
	  lib/update/heatbath/su3hb.cc, lib/update/heatbath/su3hb.h,
	  lib/update/heatbath/su3over.cc, lib/update/heatbath/su3over.h,
	  lib/update/molecdyn/old/wils_hamsys_w.h,
	  lib/update/molecdyn/old/mese/clmesferm_w.cc,
	  lib/update/molecdyn/old/mese/mesferm_w.cc,
	  lib/update/molecdyn/old/mese/wlmesferm_w.cc,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.cc,
	  lib/util/ft/sftmom.h, lib/util/gauge/reunit.cc,
	  lib/util/gauge/reunit.h, lib/util/gauge/su2extract.cc,
	  lib/util/gauge/su2extract.h, lib/util/gauge/su3proj.cc,
	  lib/util/gauge/su3proj.h, lib/util/gauge/sun_proj.cc,
	  lib/util/gauge/sun_proj.h, lib/util/gauge/sunfill.cc,
	  lib/util/gauge/sunfill.h, mainprogs/tests/invcg2_prec_wilson.cc,
	  mainprogs/tests/invcg2_timing_hacks_2.cc,
	  mainprogs/tests/invcg2_timing_hacks_3.cc,
	  mainprogs/tests/t_bicgstab.cc, mainprogs/tests/t_follana_io_s.cc,
	  mainprogs/tests/t_propagator_nrqcd.cc,
	  mainprogs/tests/t_ritz_KS.cc, mainprogs/tests/t_wlinvcg.cc:
	  Removed Ordered and Unordered Subsets and Sets. Now just have
	  Subsets and Sets -not Unordered or Ordered - passes regressions
	  with suitable QDP where QDP has SSE disabled

2007-02-22 15:52  tag chroma3-22-5

2007-02-22 15:52  bjoo

	* NEWS, aclocal.m4, configure, configure.ac: Version Stamp before
	  subset changes

2007-02-22 10:51  edwards

	* lib/meas/inline/hadron/inline_diquark_w.cc: Fixed typos.

2007-02-22 01:58  edwards

	* lib/meas/: hadron/diquark_w.cc, hadron/diquark_w.h,
	  inline/hadron/inline_diquark_w.cc,
	  inline/hadron/inline_diquark_w.h: First version of diquark
	  routines.

2007-02-21 23:52  edwards

	* lib/meas/inline/hadron/inline_qqq_w.h: Changed doxygen comment.

2007-02-21 23:51  edwards

	* lib/meas/inline/hadron/: inline_qqq_w.cc, inline_qqq_w.h: Changed
	  to using structs within the InlineQQQEnv namespace.

2007-02-18 13:50  bjoo

	* NEWS, lib/Makefile.am,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_clover_fermact_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.cc,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_clover_linop_w.h,
	  lib/actions/ferm/linop/linop_w.h, mainprogs/tests/t_temp_prec.cc,
	  tests/chroma/hadron/propagator/iluprec_s_cprec_t_clover.ini.xml,
	  tests/chroma/hadron/propagator/iluprec_s_cprec_t_clover.metric.xml,
	  tests/chroma/hadron/propagator/iluprec_s_cprec_t_clover.out.xml:
	  Added ILU Preconditioned Space Central Temp Preconditioned Clover

2007-02-16 22:51  bjoo

	* lib/central_tprec_linop.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h,
	  mainprogs/tests/t_temp_prec.cc: Added genral matrix A-1 to
	  ILUPrec linop. For wilson A=0 and A-1 = -1. For clover A is the
	  clover term with a suitable mass term. Coming soon

2007-02-16 17:52  bjoo

	* lib/Makefile.am, lib/central_tprec_linop.h,
	  lib/iluprec_s_cprec_t_wilstype_fermact_w.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/iluprec_s_cprec_t_wilson_fermact_w.h,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/iluprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/qprop/central_tprec_fermact_qprop_w.cc,
	  lib/actions/ferm/qprop/unprec_s_cprec_t_fermact_qprop_w.cc,
	  mainprogs/tests/t_temp_prec.cc,
	  tests/chroma/hadron/propagator/iluprec_s_cprec_t_wilson.ini.xml,
	  tests/chroma/hadron/propagator/iluprec_s_cprec_t_wilson.metric.xml,
	  tests/chroma/hadron/propagator/iluprec_s_cprec_t_wilson.out.xml,
	  tests/chroma/hadron/propagator/regres.pl: Added ILU (RED BLACK)
	  Preconditioned Wilson TPrec LinOp

2007-02-15 17:40  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/linop/central_tprec_nospin_utils.h,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h:
	  Refactored central tprec linop. Moved generic bits into
	  central_tprec_nospin_utils.h. Changed site loops, to be able to
	  cope with other subsets than all. - Do I really need to figure
	  out how to do 3d even-odd subsets in QDP

2007-02-15 15:56  tag chroma3-22-4

2007-02-15 15:56  bjoo

	* aclocal.m4, configure, configure.ac, tests/regres.pl: Remade
	  autofiles. Unprec Space Temp Precond Time now works

2007-02-15 14:59  bjoo

	* NEWS, lib/Makefile.am, lib/unprec_s_cprec_t_wilstype_fermact_w.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_s_cprec_t_wilson_fermact_w.h,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h,
	  lib/actions/ferm/qprop/unprec_s_cprec_t_fermact_qprop_w.cc,
	  mainprogs/tests/t_temp_prec.cc, tests/regres.pl,
	  tests/chroma/hadron/propagator/regres.pl,
	  tests/chroma/hadron/propagator/unprec_s_cprec_t_wilson.ini.xml,
	  tests/chroma/hadron/propagator/unprec_s_cprec_t_wilson.metric.xml,
	  tests/chroma/hadron/propagator/unprec_s_cprec_t_wilson.out.xml,
	  tests/chroma/hadron/propagator/unprec_wilson.ini.xml,
	  tests/chroma/hadron/propagator/unprec_wilson.metric.xml,
	  tests/chroma/hadron/propagator/unprec_wilson.out.xml: Wrapped
	  FermAct round Central TPrec LinOp and wrote qprop

2007-02-13 17:25  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/central_tprec_linop.h,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_s_cprec_t_wilson_linop_w.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_temp_prec.cc:
	  Added Space Unpreconditioned Time Preconditioned Wilson Op

2007-02-11 17:57  edwards

	* lib/util/gauge/gauge_init_aggregate.cc: Ooops, forgot to add
	  "SZIN". Now done.

2007-02-08 10:49  tag chroma3-22-3

2007-02-08 10:49  bjoo

	* configure, configure.ac: Remade autofiles

2007-02-08 10:48  bjoo

	* NEWS, aclocal.m4, configure,
	  lib/actions/ferm/linop/lwldslash_array_qdpopt_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_w.cc,
	  lib/io/enum_io/enum_io.h, lib/io/enum_io/enum_wvfkind_io.cc,
	  lib/io/enum_io/enum_wvfkind_io.h: Fixed Wfkind thing

2007-02-06 10:27  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/chroma_config_internal.h.in, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_lwldslash_array.cc,
	  mainprogs/tests/t_lwldslash_new.cc, other_libs/cg-dwf/aclocal.m4,
	  other_libs/cg-dwf/configure: Added faster dslashes in QDP

2007-02-06 10:20  bjoo

	* lib/actions/ferm/linop/: dslash_array_w.h, dslash_w.h,
	  lwldslash_array_qdpopt_w.cc, lwldslash_array_qdpopt_w.h,
	  lwldslash_qdpopt_w.cc, lwldslash_qdpopt_w.h: Added faster QDP
	  Dslashen

2007-02-04 17:57  edwards

	* lib/meas/smear/link_smearing_aggregate.cc: Changed str() to
	  printCurrentContext()

2007-02-04 17:54  edwards

	* tests/: hmc/hmc.prec_wilson.out.xml,
	  chroma/schrfun/schrfun.ini.xml, chroma/schrfun/schrfun.out.xml:
	  New regression output.

2007-02-04 17:52  edwards

	* lib/util/gauge/szinqio_gauge_init.cc: Changed print str() to
	  printCurrentContext()

2007-02-04 17:49  edwards

	* mainprogs/main/hmc.cc: Added gauge init to linkage.

2007-02-04 17:44  edwards

	* mainprogs/main/hmc.cc: Moved around try/catch.

2007-02-04 17:41  edwards

	* mainprogs/main/hmc.cc: Fixed a small typo.

2007-02-04 17:40  edwards

	* mainprogs/main/: chroma.cc, hmc.cc: Added try/catch around gauge
	  init.

2007-02-04 17:09  edwards

	* lib/meas/: smear/link_smearing_aggregate.cc,
	  sources/pt_source_const.cc, sources/sh_source_const.cc: Switched
	  to using link_smearing.path

2007-02-04 17:08  edwards

	* lib/io/io.h: Added xml_group_reader.h

2007-02-04 17:07  edwards

	* lib/Makefile.am: Added new gauge initializers.

2007-02-04 17:07  edwards

	* mainprogs/main/: chroma.cc, hmc.cc: Switched to using new gauge
	  initializer object.

2007-02-04 17:06  edwards

	* lib/util/gauge/: cppacs_gauge_init.cc, cppacs_gauge_init.h,
	  disordered_gauge_init.cc, disordered_gauge_init.h, gauge.h,
	  gauge_init.h, gauge_init_aggregate.cc, gauge_init_aggregate.h,
	  gauge_init_factory.h, kyu_gauge_init.cc, kyu_gauge_init.h,
	  milc_gauge_init.cc, milc_gauge_init.h, nersc_gauge_init.cc,
	  nersc_gauge_init.h, sf_gauge_init.cc, sf_gauge_init.h,
	  szin_gauge_init.cc, szin_gauge_init.h, szinqio_gauge_init.cc,
	  szinqio_gauge_init.h, unit_gauge_init.cc, unit_gauge_init.h,
	  weak_gauge_init.cc, weak_gauge_init.h: New gauge initializers.

2007-02-02 10:30  edwards

	* lib/meas/inline/hadron/inline_qqq_w.cc: Changed barprop_1d to
	  have type ComplexF.

2007-02-02 00:22  edwards

	* lib/: io/qprop_io.cc, io/qprop_io.h, meas/hadron/barcomp_w.cc,
	  meas/hadron/barcomp_w.h, meas/inline/hadron/inline_qqq_w.cc,
	  meas/inline/hadron/inline_qqq_w.h: Moved QQQSpinIndices and the
	  reader/writer to qprop_io. Now QQQBarcomp_t knows about spin
	  indices.

2007-02-02 00:21  edwards

	* tests/chroma/hadron/qqq/qqq.out.xml: Updated output format.

2007-02-01 22:49  edwards

	* lib/meas/: hadron/barcomp_w.cc, hadron/barcomp_w.h,
	  inline/hadron/inline_qqq_w.cc, inline/hadron/inline_qqq_w.h:
	  Added sparse QQQ output format.

2007-02-01 22:49  edwards

	* tests/chroma/hadron/qqq/: qqq.ini.xml, qqq.out.xml: New sparse
	  output format.

2007-01-20 16:57  edwards

	* lib/actions/ferm/invert/minvcg.cc: Added missing "stop" of
	  swatch.

2007-01-16 21:54  edwards

	* configure: Induced changes.

2007-01-16 21:53  edwards

	* lib/Makefile.am, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: Removed old altivec and sse cg
	  structure.

2007-01-16 21:50  edwards

	* configure.ac: Removed old altivec and sse cg codes.

2007-01-16 21:50  edwards

	* lib/: Makefile.am,
	  actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.cc,
	  actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.h,
	  actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.cc,
	  actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.cc,
	  actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.h: Removed old
	  usage of altivec and sse dwf cg codes. Do not need eoprec_cg_dwf
	  wrapper.

2007-01-16 21:39  edwards

	* lib/actions/ferm/qprop/: avp_altivecf_solver.cc,
	  avp_altivecf_solver.h, avp_bgld_solver.cc, avp_bgld_solver.h,
	  avp_bglf_solver.cc, avp_bglf_solver.h, avp_inverter_interface.h,
	  avp_ssed_solver.cc, avp_ssed_solver.h, avp_ssef_solver.cc,
	  avp_ssef_solver.h: Added doxygen comments. Also put in
	  appropriate printing of name of inverter being called.

2007-01-11 01:16  juge

	* lib/meas/hadron/group_baryon_operator_w.h: Removed extra cfg
	  variable from QQQ routines.

2007-01-11 01:01  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: Removed extra cfg
	  variable from QQQs.

2007-01-08 09:07  bjoo

	* other_libs/cg-dwf/: aclocal.m4, configure: Re-autoified with v
	  1.9.2 tools

2007-01-08 09:04  bjoo

	* other_libs/cg-dwf/: Makefile.am, aclocal.m4, configure: Hopefully
	  fixed the automake file

2007-01-05 14:10  bjoo

	* other_libs/cg-dwf/: aclocal.m4, configure: Remade autofiles

2007-01-05 14:06  bjoo

	* other_libs/cg-dwf/: Makefile.am, aclocal.m4, configure,
	  configure.ac, dwf-ssed.h, dwf-ssef.h, dwf.c, t_dwf_cg2.c: Added
	  in timings stuff

2007-01-04 21:53  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Changed
	  "QDPIO::cerr" to "cerr" so any node can print the error output of
	  a  det() < 0.

2007-01-03 12:53  tag chroma3-22-2

2007-01-03 12:53  bjoo

	* configure, configure.ac,
	  lib/actions/ferm/linop/clover_term_qdp_w.cc: Added check for logs
	  of negative numbers - added new revision number to configure.ac

2006-12-29 00:04  edwards

	* NEWS: Infon on 3.22.1 and 3.22.0.

2006-12-28 12:34  tag chroma3-22-1

2006-12-28 12:34  bjoo

	* lib/update/molecdyn/: integrator/abs_integrator.h,
	  integrator/lcm_4mn4fp_recursive.h,
	  integrator/lcm_4mn5fp_recursive.h,
	  integrator/lcm_4mn5fv_recursive.h,
	  integrator/lcm_creutz_gocksch_4_recursive.h,
	  integrator/lcm_exp_sdt.h, integrator/lcm_exp_tdt.h,
	  integrator/lcm_sts_leapfrog_recursive.h,
	  integrator/lcm_sts_min_norm2_recursive.h,
	  integrator/lcm_tst_leapfrog_recursive.h,
	  integrator/lcm_tst_min_norm2_recursive.h,
	  monomial/abs_monomial.h,
	  monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  monomial/two_flavor_hasenbusch_monomial_w.h,
	  monomial/two_flavor_monomial5d_w.h,
	  monomial/two_flavor_monomial_w.h,
	  monomial/two_flavor_polyprec_monomial_w.h,
	  predictor/last_solution_predictor.h,
	  predictor/linear_extrap_predictor.h,
	  predictor/mre_extrap_predictor.h,
	  predictor/zero_guess_predictor.h: Dealt with Chrono resetting.
	  Added resetPredictors into monomial base class and into component
	  integrators. Toplevel integrator can explicitly reset chron
	  predictors at start of traj now. Previously this was implicitly
	  done in the field copying routine setInternalFields. Since now
	  most of the time we dont copy I had to explicitly call the
	  predictor reset at the start of the traj. Predictors are also
	  implicitly called after field refreshments and before solves in
	  action calculations

2006-12-28 10:41  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_hasenbusch5d_dwf.ini.xml,
	  t_leapfrog.prec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.prec_hasenbusch5d_dwf.metric.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.ini.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch5d_dwf.metric.xml: Added Unprec and
	  Prec Hasenbusch 5D Monomial tests for DWF

2006-12-28 10:40  bjoo

	*
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h:
	  Removed some diagnostic couts

2006-12-28 10:39  bjoo

	* mainprogs/tests/t_leapfrog.cc: Added a few comments here and
	  there

2006-12-28 10:39  bjoo

	* lib/update/molecdyn/monomial/:
	  eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  two_flavor_hasenbusch_monomial5d_w.h,
	  unprec_two_flavor_hasenbusch_monomial5d_w.cc,
	  unprec_two_flavor_hasenbusch_monomial5d_w.h: Made the 5D
	  Hasenbusch monomials work finally

2006-12-27 20:39  tag chroma3-22-0

2006-12-27 20:39  bjoo

	* aclocal.m4, configure: Remade autotools1.9.2 files

2006-12-27 20:20  bjoo

	* tests/t_leapfrog/: t_leapfrog.prec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  t_leapfrog.prec_parwilson.ini.xml,
	  t_leapfrog.prec_parwilson.log.xml,
	  t_leapfrog.prec_polynomial_wilson.ini.xml,
	  t_leapfrog.prec_wilson.ini.xml, t_leapfrog.prec_wilson.log.xml,
	  t_leapfrog.rect_gaugeact.ini.xml,
	  t_leapfrog.rect_gaugeact.log.xml,
	  t_leapfrog.rect_gaugeact_1.ini.xml,
	  t_leapfrog.rect_gaugeact_1.log.xml,
	  t_leapfrog.rect_gaugeact_aniso.ini.xml,
	  t_leapfrog.rect_gaugeact_aniso.log.xml,
	  t_leapfrog.rect_gaugeact_c1t0.ini.xml,
	  t_leapfrog.rect_gaugeact_c1t0.log.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.ini.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.log.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.ini.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.log.xml,
	  t_leapfrog.unprec_clover.ini.xml,
	  t_leapfrog.unprec_clover.log.xml, t_leapfrog.unprec_dwf.ini.xml,
	  t_leapfrog.unprec_dwf.log.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.log.xml,
	  t_leapfrog.unprec_wilson.ini.xml,
	  t_leapfrog.unprec_wilson.log.xml: Converted all to new MD Scheme

2006-12-27 13:33  kostas

	* lib/meas/inline/hadron/inline_stag_to_wils.cc: ....

2006-12-25 23:36  kostas

	* lib/meas/inline/hadron/inline_stag_to_wils.cc: ..

2006-12-25 22:55  bjoo

	* tests/t_leapfrog/:
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_dwf.log.xml,
	  t_leapfrog.prec_1flav_wilson.ini.xml,
	  t_leapfrog.prec_1flav_wilson.log.xml,
	  t_leapfrog.prec_2flav_clover.ini.xml,
	  t_leapfrog.prec_2flav_clover.log.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.ini.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.log.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.ini.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.log.xml,
	  t_leapfrog.prec_clover_stout.ini.xml,
	  t_leapfrog.prec_clover_stout.log.xml,
	  t_leapfrog.prec_contfrac.ini.xml,
	  t_leapfrog.prec_contfrac.log.xml, t_leapfrog.prec_dwf.ini.xml,
	  t_leapfrog.prec_dwf.log.xml: Fixed about half of the regressions

2006-12-25 17:54  bjoo

	* lib/Makefile.am, lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/lcm_min_norm2_recursive.cc,
	  lib/update/molecdyn/integrator/lcm_min_norm2_recursive.h,
	  lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive.cc,
	  lib/update/molecdyn/integrator/lcm_sts_min_norm2_recursive.h,
	  lib/update/molecdyn/integrator/lcm_tst_leapfrog_recursive.cc,
	  lib/update/molecdyn/integrator/lcm_tst_leapfrog_recursive.h,
	  lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive.cc,
	  lib/update/molecdyn/integrator/lcm_tst_min_norm2_recursive.h,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_qpq_integrator_mts.ini.xml:
	  Added TST versions of leapfrog and min norm 2

2006-12-25 17:33  bjoo

	* tests/t_leapfrog/: t_leapfrog.aniso_spectrum.ini.xml,
	  t_leapfrog.aniso_spectrum.log.xml,
	  t_leapfrog.fixed_X_action_stout.ini.xml,
	  t_leapfrog.fixed_X_action_stout.log.xml,
	  t_leapfrog.lw.sfnonpt.ini.xml, t_leapfrog.lw.sfnonpt.log.xml:
	  Converted

2006-12-25 16:56  bjoo

	* lib/Makefile.am: Code now builds. Regressions dont yet work.
	  1.6.2 build files

2006-12-25 16:50  bjoo

	* tests/hmc/: hmc.prec_wilson.ini.xml, hmc.prec_wilson.log.xml,
	  hmc_new.prec_wilson.ini.xml, hmc_new.prec_wilson.log.xml,
	  hmc_new.prec_wilson.metric.xml, regres.pl: Moved
	  hmc_new.prec_wilson tests on to hmc.prec_wilson tests

2006-12-25 16:40  bjoo

	* aclocal.m4, configure, lib/Makefile.am, lib/io/io.h,
	  lib/io/monomial_io.cc,
	  lib/update/molecdyn/hamiltonian/abs_hamiltonian.h,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.cc,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  lib/update/molecdyn/hmc/abs_hmc.h,
	  lib/update/molecdyn/hmc/lcm_hmc.h,
	  lib/update/molecdyn/integrator/abs_integrator.h,
	  lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/integrator_aggregate.h,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.h,
	  lib/update/molecdyn/integrator/lcm_toplevel_integrator.h,
	  lib/update/molecdyn/integrator/md_integrator_factory.h,
	  mainprogs/main/Makefile.am, mainprogs/main/hmc.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_leapfrog.cc: Old
	  MD Strip complete. New removed from names. Linkage problem in
	  readNamedMonomialArray see if this will go away

2006-12-25 16:36  bjoo

	* mainprogs/tests/t_leapfrog.cc: Moved new t_leapfrog_component to
	  t_leapfrog

2006-12-25 16:35  bjoo

	* mainprogs/tests/t_leapfrog_component.cc: Moving
	  t_leapfrog_component to t_leapfrog

2006-12-25 16:34  bjoo

	* mainprogs/tests/t_leapfrog.cc: Removed old t_leapfrog.cc

2006-12-25 16:26  bjoo

	* mainprogs/main/: hmc.cc, hmc_new.cc: Removed old hmc.cc

2006-12-25 16:10  bjoo

	* lib/update/molecdyn/hmc/: abs_hmc.h, abs_hmc_new.h, hmc.h,
	  lcm_hmc.h, lcm_hmc_new.h: MOved new HMC files in place of old

2006-12-25 16:08  bjoo

	* lib/update/molecdyn/hmc/: abs_hmc.h, hmc.h, lcm_hmc.h: Removed
	  old HMC Files

2006-12-21 17:49  tag chroma3-21-1-pre-md-strip

2006-12-21 17:49  bjoo

	* aclocal.m4, configure: Remade autofiles with 1.9.2

2006-12-21 17:46  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/lcm_4mn5fp_recursive.cc,
	  lib/update/molecdyn/integrator/lcm_4mn5fp_recursive.h,
	  lib/update/molecdyn/integrator/lcm_4mn5fv_recursive.cc: Added
	  4MN5FP integrator

2006-12-20 15:23  bjoo

	* lib/update/molecdyn/integrator/:
	  lcm_creutz_gocksch_4_recursive.cc,
	  lcm_creutz_gocksch_4_recursive.h: Oops

2006-12-20 15:22  bjoo

	* lib/: Makefile.am,
	  update/molecdyn/integrator/integrator_aggregate.cc: Added 4th
	  order Creutz-Gocksch-Campostrini integrator

2006-12-20 14:14  bjoo

	* lib/Makefile.am: Makefile.am

2006-12-20 14:12  bjoo

	* lib/update/molecdyn/integrator/: integrator_aggregate.cc,
	  lcm_4mn4fp_recursive.cc, lcm_4mn4fp_recursive.h,
	  lcm_4mn5fv_recursive.h: Added 4th order minimum norm 4 force
	  calculation position variant

2006-12-20 13:52  bjoo

	* lib/update/molecdyn/integrator/: lcm_4mn5fv_recursive.cc,
	  lcm_4mn5fv_recursive.h: De Forcrand Takaishi 4th order 5 force
	  Velocity Version Integrator

2006-12-11 12:20  edwards

	* lib/meas/hadron/: baryon_spinmat_funcmap_w.cc,
	  baryon_spinmat_funcmap_w.h, simple_baryon_seqsrc_w.cc: Added a
	  function-map for the baryon spin matrices. Now have a generic
	  NUCL-NUCL and DELTA-DELTA sequential source.

2006-12-11 12:19  edwards

	* lib/Makefile.am: Added baryon_spinmat_funcmap_w.{h,cc}

2006-12-11 10:41  edwards

	* lib/meas/hadron/barspinmat_w.h: Added include of chromabase.h

2006-12-10 16:32  tag chroma3-21-1

2006-12-10 16:32  edwards

	* NEWS: Info on 3.21.1

2006-12-10 16:26  edwards

	* aclocal.m4, configure: Induced changes

2006-12-10 16:22  edwards

	* configure.ac: Changed to 3.21.1

2006-12-09 22:45  edwards

	* tests/chroma/hadron_s/propagator/klein_gordon.out.xml: Updated.

2006-12-09 21:06  edwards

	* lib/io/enum_io/enum_wvfkind_io.h: Moved obsolete enums into here.

2006-12-09 21:06  edwards

	* lib/io/enum_io/enum_wavetype_io.h: Moved obsolete enum into here.

2006-12-09 21:05  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Added a getMass() function.

2006-12-09 21:04  edwards

	* lib/: meas/smear/sink_smear2.cc, meas/smear/sink_smear2.h,
	  meas/smear/smear.h, meas/smear/wvfkind.h,
	  meas/sources/d_src_w.cc, meas/sources/d_src_w.h,
	  meas/sources/maksrc2_w.cc, meas/sources/p_src_w.cc,
	  meas/sources/p_src_w.h, meas/sources/sources.h,
	  meas/sources/sources_w.h, meas/sources/srcsnktype.h,
	  meas/sources/wavetype.h, io/io.h, io/smearing_io.cc,
	  io/smearing_io.h, io/enum_io/enum_gaugebc_io.cc,
	  io/enum_io/enum_gaugebc_io.h, io/enum_io/enum_io.h,
	  io/enum_io/enum_srcsnktype_io.cc,
	  io/enum_io/enum_srcsnktype_io.h: Removed obsolete files.

2006-12-09 21:04  edwards

	* lib/meas/hadron/: D_j_w.cc, D_j_w.h, DjDk_w.cc, DjDk_w.h,
	  hadron_w.h: Removed obsolete D_j and DjDk files.

2006-12-09 21:04  edwards

	* lib/meas/hadron/group_baryon_operator_w.cc: Changed include of
	  chroma.h to chromabase.h

2006-12-09 21:03  edwards

	* lib/meas/hadron/group_baryon_operator_w.h: Removed unused include
	  of  srcsnktype.h

2006-12-09 21:02  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_hadspec_w.cc, inline_hadspec_w.h, inline_mesonspec_w.cc,
	  inline_mres_w.h, inline_qpropqio_w.h, inline_qqbar_w.h,
	  inline_qqq_w.cc, inline_qqq_w.h, inline_spectrumQll.cc,
	  inline_spectrumQll.h, inline_spectrum_w.cc, inline_spectrum_w.h,
	  inline_static_light_spec_w.cc, inline_static_light_spec_w.h:
	  Removed old sink_smear2.h includes. Changed all places that
	  searched for a quark mass to now go through a  getMass() function
	  like getBC function.

2006-12-09 20:59  edwards

	* lib/meas/inline/hadron/: inline_qqqNucNuc_w.cc,
	  inline_qqqNucNuc_w.h: Removed sink_smearing options. Now, the
	  props are passed in already sink_smear.

2006-12-09 20:58  edwards

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: Removed unused
	  sink_smear2.h

2006-12-09 20:56  edwards

	* lib/: util/gauge/stout_utils.h,
	  actions/ferm/qprop/avp_altivecf_solver.cc,
	  actions/ferm/qprop/avp_altivecf_solver.h,
	  actions/ferm/qprop/avp_bgld_solver.cc,
	  actions/ferm/qprop/avp_bgld_solver.h,
	  actions/ferm/qprop/avp_bglf_solver.cc,
	  actions/ferm/qprop/avp_bglf_solver.h,
	  actions/ferm/qprop/quarkprop4_multi_w.h: Added doxygen comments.

2006-12-09 20:55  edwards

	* tests/regres.pl: Added qqq and qqqNucNuc.

2006-12-09 20:54  edwards

	* lib/Makefile.am: Removed some obsolete files.

2006-12-09 20:53  edwards

	* tests/chroma/hadron/: qqq/qqq.metric.xml, qqq/qqq.out.xml,
	  qqq/regres.pl, qqqNucNuc/qqqNucNuc.ini.xml,
	  qqqNucNuc/qqqNucNuc.metric.xml, qqqNucNuc/qqqNucNuc.out.xml,
	  qqqNucNuc/regres.pl: New regression tests.

2006-12-09 18:19  edwards

	* tests/chroma/hadron/sink_smear/: sink_smearing.ini.xml,
	  sink_smearing.out.xml: Updated.

2006-12-09 17:22  edwards

	* lib/actions/ferm/linop/klein_gordon_linop_s.cc: Typo fix.

2006-12-09 14:47  edwards

	* lib/actions/ferm/linop/klein_gordon_linop_s.cc: Fixed -0.5 in
	  linop.

2006-12-09 13:31  edwards

	* other_libs/Makefile.am: Removed obsolete packages.

2006-12-09 13:30  edwards

	* aclocal.m4, configure: Induced changes

2006-12-09 13:29  edwards

	* configure.ac: Removed obsolete options.

2006-12-07 13:36  edwards

	* tests/chroma/hadron_s/propagator/: klein_gordon.ini.xml,
	  klein_gordon.metric.xml, klein_gordon.out.xml, regres.pl: Added a
	  Klein-Gordon operator.

2006-12-07 13:26  edwards

	* lib/Makefile.am: Added a klein-gordon fermact and linop.

2006-12-07 13:26  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_s.cc,
	  fermacts/klein_gordon_fermact_s.cc,
	  fermacts/klein_gordon_fermact_s.h, linop/klein_gordon_linop_s.cc,
	  linop/klein_gordon_linop_s.h: Added a new Klein-Gordon operator.

2006-12-07 13:24  edwards

	* lib/actions/ferm/invert/syssolver_linop_cg.cc: Added a staggered
	  version.

2006-12-06 11:56  edwards

	* tests/chroma/hadron/building_blocks/bb-deriv.out.xml: Updated.

2006-12-05 00:04  edwards

	* tests/chroma/hadron/building_blocks/: bb-baryon.out.xml,
	  bb-deriv.out.xml, bb-meson.out.xml: Updated.

2006-12-05 00:00  edwards

	* tests/chroma/hadron/seqsource/: seqsource-meson.out.xml,
	  seqsource-derivmeson.out.xml, seqsource-baryon.ini.pl,
	  seqsource-baryon.ini.xml, seqsource-baryon.out.xml,
	  seqsource-photon.out.xml: Updated.

2006-12-04 23:52  edwards

	* lib/meas/hadron/deriv_meson_seqsrc_w.cc: Fixed signs on the
	  rho_2xYYY seqsources.

2006-12-04 15:43  edwards

	* tests/chroma/hadron/: building_blocks/bb-baryon.ini.pl,
	  building_blocks/bb-baryon.ini.xml,
	  building_blocks/bb-deriv.ini.pl,
	  building_blocks/bb-deriv.ini.xml,
	  building_blocks/bb-meson.ini.pl,
	  building_blocks/bb-meson.ini.xml,
	  seqsource/seqsource-baryon.ini.pl,
	  seqsource/seqsource-baryon.ini.xml,
	  seqsource/seqsource-derivmeson.ini.pl,
	  seqsource/seqsource-derivmeson.ini.xml,
	  seqsource/seqsource-meson.ini.pl,
	  seqsource/seqsource-meson.ini.xml: Updated regressions.

2006-12-04 15:38  edwards

	* lib/meas/hadron/: deriv_meson_seqsrc_w.cc,
	  deriv_meson_seqsrc_w.h: Added rho_2xYYY  type seqsources.

2006-12-04 15:38  edwards

	* lib/meas/hadron/simple_meson_seqsrc_w.cc: Changed a0-b0 back to
	  a0-a0_2

2006-12-04 15:38  edwards

	* lib/meas/hadron/spin_insertion_factory.h: Added doxygen comments.

2006-12-03 22:25  tag chroma3-21-0

2006-12-03 22:25  edwards

	* tests/chroma/hadron/building_blocks/: bb-deriv.ini.pl,
	  bb-deriv.ini.xml, bb-deriv.out.xml: Updated to use new
	  seqsources.

2006-12-03 16:55  juge

	* mainprogs/main/group_baryon_run.cc: This replaces
	  gbaryonall2all.cc The subroutines are in
	  group_baryon_operator_w.cc/h A final check on the phases is
	  needed.

2006-12-03 15:33  edwards

	* lib/meas/hadron/: deriv_meson_seqsrc_w.cc,
	  deriv_meson_seqsrc_w.h: Added more seqsources. Simplified
	  interface by making new bases classes for the A1/A2 and T1/T2/E
	  reps that actually hold the data.

2006-12-03 15:32  edwards

	* tests/chroma/hadron/seqsource/: seqsource-derivmeson.ini.pl,
	  seqsource-derivmeson.ini.xml, seqsource-derivmeson.out.xml: Added
	  more seqsources.

2006-12-03 12:41  edwards

	* lib/meas/hadron/: deriv_meson_seqsrc_w.cc,
	  deriv_meson_seqsrc_w.h: Added new seqsrcs.

2006-12-02 16:42  edwards

	* tests/hmc/: hmc.prec_wilson.log.xml, hmc.prec_wilson.out.xml:
	  Updated.

2006-12-02 16:38  edwards

	* tests/hmc/: hmc_new.prec_wilson.log.xml, hmc.prec_wilson.out.xml,
	  regres.pl: Updated.

2006-12-02 16:34  edwards

	* tests/hmc/hmc.prec_wilson.out.xml: Updated

2006-12-02 16:19  edwards

	* tests/chroma/: eig/eigbnds.out.xml, eig/ritz_Hw-v1.out.xml,
	  gfix/coulgauge/coulgauge.out.xml, glue/fuzwilp/fuzwilp.out.xml,
	  glue/gaugestate/gaugestate.out.xml, glue/wilslp/wilslp.out.xml,
	  hadron/bar3ptfn/bar3ptfn.out.xml,
	  hadron/building_blocks/bb-baryon.out.xml,
	  hadron/building_blocks/bb-deriv.out.xml,
	  hadron/building_blocks/bb-meson.out.xml,
	  hadron/fermstate/fermstate.out.xml,
	  hadron/hadspec/hadspec.out.xml,
	  hadron/make_source/dilute.out.xml,
	  hadron/make_source/make_source.out.xml,
	  hadron/make_source/source-deriv.out.xml,
	  hadron/make_source/source-displace.out.xml,
	  hadron/mesonspec/mesonspec.out.xml, hadron/mres/mres.out.xml,
	  hadron/noisy_building_blocks/nbb.out.xml,
	  hadron/propagator/prec_clover-stout3d.out.xml,
	  hadron/propagator/prec_clover.out.xml,
	  hadron/propagator/prec_dwf.out.xml,
	  hadron/propagator/prec_ht_contfrac5d.out.xml,
	  hadron/propagator/prec_ovext.out.xml,
	  hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  hadron/propagator/prec_parwilson.out.xml,
	  hadron/propagator/prec_wilson-smearing.out.xml,
	  hadron/propagator/prec_wilson-twisted.out.xml,
	  hadron/propagator/prec_wilson.ferm.out.xml,
	  hadron/propagator/prec_wilson.out.xml,
	  hadron/propagator/prec_zolo_nef.out.xml,
	  hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  hadron/propagator/unprec_clover.out.xml,
	  hadron/propagator/unprec_dwftransf.out.xml,
	  hadron/propagator/unprec_hamberwu.out.xml,
	  hadron/propagator/unprec_ovext.out.xml,
	  hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  hadron/propagator/unprec_zolo_nef.out.xml,
	  hadron/seqsource/seqsource-baryon.out.xml,
	  hadron/seqsource/seqsource-derivmeson.out.xml,
	  hadron/seqsource/seqsource-meson.out.xml,
	  hadron/seqsource/seqsource-photon.out.xml,
	  hadron/sink_smear/sink-deriv.out.xml,
	  hadron/sink_smear/sink-displace.out.xml,
	  hadron/sink_smear/sink_smearing.out.xml,
	  hadron/static_light/static_light.out.xml,
	  hadron/static_light/static_light_pot.out.xml,
	  hadron/stoch_baryon/stoch_baryon.out.xml,
	  hadron/stoch_meson/stoch_meson.out.xml,
	  hadron_s/make_source/make_source_s.out.xml,
	  hadron_s/propagator/asqtad.out.xml,
	  hadron_s/sink_smear/sink_smearing_s.out.xml,
	  hadron_s/spectrum_s/spectrum_s.out.xml,
	  io/nersc_read_obj/nersc_read_obj.out.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_read_obj/szin_read_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.out.xml,
	  schrfun/schrfun.out.xml, smear/link_smear/link_smear.out.xml:
	  Updated tests.

2006-12-02 16:14  edwards

	* mainprogs/main/hmc_new.cc: Changed how Config_info is written.

2006-12-02 16:03  edwards

	* tests/chroma/: io/nersc_read_obj/nersc_read_obj.out.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_read_obj/szin_read_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.out.xml, eig/eigbnds.out.xml,
	  eig/ritz_Hw-v1.out.xml, gfix/coulgauge/coulgauge.out.xml,
	  glue/fuzwilp/fuzwilp.out.xml, glue/gaugestate/gaugestate.out.xml,
	  glue/wilslp/wilslp.out.xml, smear/link_smear/link_smear.out.xml:
	  Updated.

2006-12-02 15:57  edwards

	* lib/meas/inline/hadron_s/inline_sink_smear_s.cc,
	  scripts/regenerate.csh,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.ini.xml,
	  tests/chroma/hadron/building_blocks/bb-baryon.metric.xml,
	  tests/chroma/hadron/building_blocks/bb-meson.metric.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.metric.xml,
	  tests/chroma/hadron_s/sink_smear/sink_smearing_s.out.xml,
	  tests/chroma/io/qio_read_obj/qio_read_obj.out.xml: Fixes.

2006-12-02 15:51  edwards

	* scripts/regenerate.csh: Removed dosisms.

2006-12-02 13:29  edwards

	* lib/io/qprop_io.cc: Removed the old "if path" stuff.

2006-12-02 13:23  edwards

	* aclocal.m4, configure: Induced changes

2006-12-02 13:22  edwards

	* configure.ac: Changed to 3.21.0

2006-12-02 13:21  edwards

	* lib/actions/ferm/linop/lwldslash_w_pab.cc: This is the hacked
	  version I sent to Carsten Urbach. He claimed it worked on the UK
	  QCDOC. Need to check at BNL.

2006-12-02 13:18  edwards

	* lib/: io/qprop_io.cc, io/qprop_io.h,
	  meas/inline/hadron/inline_make_source_w.cc,
	  meas/inline/hadron/inline_propagator_w.cc,
	  meas/inline/hadron/inline_seqprop_test_w.cc,
	  meas/inline/hadron/inline_seqprop_test_w.h,
	  meas/inline/hadron/inline_seqsource_w.cc,
	  meas/inline/hadron/inline_seqsource_w.h,
	  meas/inline/hadron/inline_sink_smear_w.cc,
	  meas/inline/hadron/inline_sink_smear_w.h,
	  meas/inline/hadron_s/inline_sink_smear_s.cc: Cleaned up and
	  standardized propagator headers. Removed StateInfo.

2006-12-02 13:16  edwards

	* lib/meas/: hadron/deriv_meson_seqsrc_w.cc,
	  hadron/deriv_meson_seqsrc_w.h, hadron/simple_meson_seqsrc_w.cc,
	  smear/deriv_quark_displacement_w.cc, smear/displace.cc,
	  smear/displace.h: Collected together a unified version of
	  rightNabla, rightD and rightB.  Seqsources now appear to all work
	  and have a 2-pt function test.

2006-12-02 13:13  edwards

	* lib/util/ferm/gammasgn_w.h: Indented.

2006-12-02 13:12  edwards

	* lib/Makefile.am: Added displace.{h,cc}

2006-12-02 13:12  edwards

	* mainprogs/main/: chroma.cc, hmc.cc: Added timings and made more
	  uniform the output of Config_info.

2006-12-02 13:10  edwards

	* tests/chroma/hadron/building_blocks/bb-meson.out.xml: New
	  regression output.

2006-12-02 13:09  edwards

	* tests/chroma/hadron/building_blocks/: bb.dat.xml, bb.ini.xml,
	  bb.metric.xml, bb.out.xml: Removed - split apart.

2006-12-02 13:08  edwards

	* tests/chroma/hadron/building_blocks/bb-v2.dat.xml: Removed.

2006-12-02 13:08  edwards

	* tests/chroma/hadron/building_blocks/: bb-baryon.ini.pl,
	  bb-baryon.ini.xml, bb-baryon.metric.xml, bb-baryon.out.xml,
	  bb-deriv.ini.pl, bb-deriv.ini.xml, bb-deriv.metric.xml,
	  bb-deriv.out.xml, bb-meson.ini.pl, bb-meson.ini.xml,
	  bb-meson.metric.xml, regres.pl: New regression tests.

2006-12-02 12:18  edwards

	* tests/chroma/hadron/seqsource/: seqsource-meson.ini.pl,
	  seqsource-meson.ini.xml, seqsource-meson.out.xml: Updated again
	  using new naminv convention.

2006-12-01 23:09  edwards

	* lib/meas/sources/: pt_source_smearing.cc, sh_source_smearing.cc,
	  source_smearing_factory.h: Added LatticeStaggeredPropagator and
	  LatticePropagator versions.

2006-12-01 23:09  edwards

	* lib/meas/sources/source_const_factory.h: Rerranged order of
	  decls.

2006-12-01 22:51  edwards

	* tests/chroma/hadron/seqsource/seqsource-photon.out.xml: Updated

2006-12-01 22:48  edwards

	* tests/chroma/hadron/seqsource/: seqsource-photon.ini.xml,
	  seqsource-photon.out.xml: Changed to sink_mom=100

2006-12-01 22:44  edwards

	* tests/chroma/hadron/seqsource/: regres.pl,
	  seqsource-baryon.ini.pl, seqsource-baryon.ini.xml,
	  seqsource-baryon.metric.xml, seqsource-baryon.out.xml,
	  seqsource-derivmeson.ini.pl, seqsource-derivmeson.ini.xml,
	  seqsource-derivmeson.metric.xml, seqsource-derivmeson.out.xml,
	  seqsource-meson.ini.csh, seqsource-meson.ini.pl,
	  seqsource-meson.ini.xml, seqsource-meson.out.xml: New regression
	  tests based on looking at the norm2_diff from the 3-pt loopback
	  and a 2-pt evaluation.

2006-11-30 13:59  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: Previous checkin
	  didn't seem to work.	(params.NdilReduce)

2006-11-30 11:48  edwards

	* tests/chroma/hadron/seqsource/: seqsource-meson.ini.csh,
	  seqsource-meson.ini.xml, seqsource-meson.metric.xml,
	  seqsource-meson.out.xml: New meson regression tests.

2006-11-30 11:42  edwards

	* tests/chroma/hadron/seqsource/seqsource-meson.ini.xml: New
	  seqsource tests.

2006-11-30 09:32  juge

	* mainprogs/main/gbaryonall2all.cc: Now contains the routine that
	  takes time-colour-spin dilution to time-dilution.

2006-11-30 09:30  juge

	* lib/meas/hadron/group_baryon_operator_w.h: Macro defs for
	  removing dilutions were added.  This is a temporary solution.
	  The input perl script at the end was also changed...

2006-11-29 13:45  edwards

	* lib/meas/hadron/deriv_meson_seqsrc_w.cc: Moved base class
	  functions to proper namespace.

2006-11-28 17:19  edwards

	* lib/meas/hadron/simple_meson_seqsrc_w.cc: Changed name of pion
	  sequential source.

2006-11-28 17:17  edwards

	* lib/meas/hadron/simple_meson_seqsrc_w.cc: Further fixes.

2006-11-28 15:00  edwards

	* lib/meas/hadron/: simple_baryon_seqsrc_w.cc,
	  simple_baryon_seqsrc_w.h, simple_meson_seqsrc_w.cc: More 2-pt
	  support.

2006-11-28 15:00  edwards

	* lib/meas/inline/hadron/inline_seqprop_test_w.cc: Fixed a "push"
	  and removed some debugging.

2006-11-28 14:30  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_seqprop_test_w.cc, inline_seqprop_test_w.h: New inline
	  seqprop test.

2006-11-28 14:30  edwards

	* lib/meas/inline/hadron/inline_seqsource_w.h: Changed doxygen
	  comment.

2006-11-28 14:30  edwards

	* lib/meas/inline/hadron/: inline_qpropadd_w.cc,
	  inline_qpropadd_w.h: Made new factorA and factorB inputs, so now
	  the code can compute propC = factorA*propA + factorB*propB

2006-11-28 14:28  edwards

	* lib/meas/hadron/: deriv_meson_seqsrc_w.h, hadron_seqsource.cc,
	  hadron_seqsource.h, photon_seqsrc_w.h, simple_baryon_seqsrc_w.cc,
	  simple_baryon_seqsrc_w.h, simple_meson_seqsrc_w.cc,
	  simple_meson_seqsrc_w.h: Added a  tieBack  and twoPtSink
	  function to HadronSeqSource.

2006-11-28 14:28  edwards

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h: Made the 2-pt
	  contractions visible in their own new namespace.

2006-11-28 14:27  edwards

	* lib/io/qprop_io.cc: Changed PropSinkSmear output name to
	  PropSink. This has been causing havoc since the reader/writer
	  have been inconsistent!!

2006-11-28 14:26  edwards

	* lib/io/qprop_io.h: Added comment

2006-11-28 14:26  edwards

	* lib/Makefile.am: Added inline_seqprop_test_w.{h,cc}

2006-11-28 11:58  bjoo

	* tests/regres.pl: oops again

2006-11-28 11:58  bjoo

	* tests/regres.pl: Redid autofiles

2006-11-28 11:51  bjoo

	* tests/regres.pl: Oops

2006-11-28 11:51  bjoo

	* aclocal.m4, configure: Remade autofiles

2006-11-28 11:49  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/update/molecdyn/hmc/abs_hmc_new.h,
	  lib/update/molecdyn/hmc/hmc.h,
	  lib/update/molecdyn/hmc/lcm_hmc_new.h,
	  lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/lcm_toplevel_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_toplevel_integrator.h,
	  mainprogs/main/Makefile.am, mainprogs/main/hmc_new.cc,
	  tests/regres.pl: New HMC program

2006-11-28 11:45  bjoo

	* tests/hmc/: hmc_new.prec_wilson.ini.xml,
	  hmc_new.prec_wilson.log.xml, hmc_new.prec_wilson.metric.xml,
	  regres.pl: Added tests for new HMC

2006-11-28 09:08  bjoo

	* lib/meas/hadron/group_baryon_operator_w.cc: Merged with latest
	  head revision.

2006-11-28 09:02  bjoo

	* lib/meas/inline/io/qio_read_obj_funcmap.cc: Added single prec
	  writing functions

2006-11-27 15:13  edwards

	* tests/chroma/hadron/building_blocks/: bb-deriv.out.xml,
	  bb.ini.xml, bb.out.xml: Updated tests.

2006-11-27 15:09  edwards

	* lib/meas/hadron/baryon_seqsrc_w.cc: Bug fix. Now have a call to
	  gamma5Herm() before the sink projection.

2006-11-27 15:08  edwards

	* lib/meas/hadron/hadron_seqsource.cc: Split off phase stuff to a
	  call to  singlePhase().

2006-11-27 15:07  edwards

	* lib/util/: ferm/gamma5_herm_w.cc, ferm/gamma5_herm_w.h, ft/ft.h,
	  ft/single_phase.cc, ft/single_phase.h: New support routines.

2006-11-27 15:07  edwards

	* lib/Makefile.am: Added gamma5_herm_w.{h,cc} and
	  single_phase.{h,cc}

2006-11-27 15:06  edwards

	* lib/meas/inline/hadron/inline_building_blocks_w.cc: Added some
	  additional debugging.

2006-11-27 15:05  edwards

	* lib/meas/hadron/meson_seqsrc_w.cc: Removed unused code.

2006-11-27 00:52  edwards

	* lib/meas/hadron/simple_meson_seqsrc_w.cc: Added a conj() of
	  phases()

2006-11-27 00:51  edwards

	* tests/chroma/hadron/seqsource/: seqsource-meson.ini.xml,
	  seqsource-meson.out.xml: Updated to new sequential sources.

2006-11-27 00:30  edwards

	* tests/chroma/hadron/building_blocks/bb-deriv.metric.xml: Changed
	  precision.

2006-11-27 00:21  juge

	* mainprogs/main/gbaryonall2all.cc: Quark orderings were not in
	  sync with the Chroma_Input.txt file.

2006-11-26 23:33  edwards

	* lib/: Makefile.am, meas/hadron/barseqsrc_w.cc,
	  meas/hadron/barseqsrc_w.h, meas/hadron/baryon_seqsrc_w.cc,
	  meas/hadron/baryon_seqsrc_w.h,
	  meas/hadron/deriv_meson_seqsrc_w.cc,
	  meas/hadron/deriv_meson_seqsrc_w.h,
	  meas/hadron/derivmesonseqsrc_w.cc,
	  meas/hadron/derivmesonseqsrc_w.h,
	  meas/hadron/hadron_seqsource.cc, meas/hadron/hadron_seqsource.h,
	  meas/hadron/hadron_w.h, meas/hadron/meson_seqsrc_w.cc,
	  meas/hadron/meson_seqsrc_w.h, meas/hadron/mesonseqsrc_w.cc,
	  meas/hadron/mesonseqsrc_w.h, meas/hadron/photon_seqsrc_w.cc,
	  meas/hadron/photon_seqsrc_w.h,
	  meas/hadron/seqsource_aggregate_w.cc,
	  meas/hadron/simple_baryon_seqsrc_w.cc,
	  meas/hadron/simple_baryon_seqsrc_w.h,
	  meas/hadron/simple_meson_seqsrc_w.cc,
	  meas/hadron/simple_meson_seqsrc_w.h,
	  meas/inline/hadron/inline_building_blocks_w.cc: Overhauled
	  sequential sources. The meson-derivatives appear to work, but
	  need some more tests of baryons and other mesons.

2006-11-26 23:31  edwards

	* lib/meas/inline/hadron_s/: inline_apply_fermstate_s.cc,
	  inline_apply_fermstate_s.h, inline_hadron_aggregate_s.cc: Added
	  staggered fermstates.

2006-11-26 23:29  edwards

	* tests/chroma/hadron/building_blocks/: bb.ini.xml, bb.out.xml:
	  Changed input to write all to xmldat.

2006-11-26 23:27  edwards

	* tests/chroma/hadron/building_blocks/: bb-deriv.ini.xml,
	  bb-deriv.metric.xml, bb.dat.xml: New regression tests.

2006-11-26 22:54  edwards

	* tests/chroma/hadron/building_blocks/: bb-deriv.ini.xml,
	  bb-deriv.out.xml, regres.pl: New regression tests.

2006-11-26 21:56  juge

	* mainprogs/main/gbaryonall2all.cc: Compile the program that makes
	  the source operator and sink operator separately now by #define's
	  in the main program.

2006-11-26 20:28  juge

	* mainprogs/main/gbaryonall2all.cc: The source and sink operators
	  can be made in different runs now. (there may not be enough disk
	  space to accommodate both operators at the same time)

2006-11-26 19:58  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: The complex
	  conjugation of the creation operator coefficients are taken at
	  the correlator level.

2006-11-25 14:44  tag chroma3-20-0

2006-11-25 14:44  edwards

	* NEWS: Info on 3.20.0

2006-11-23 16:55  juge

	* mainprogs/main/gbaryonall2all.cc: The first set of signs is
	  correct ...

2006-11-23 11:17  edwards

	* lib/meas/hadron/simple_baryon_operator_w.h: Added a hack
	  operator() to deal with Jimmy's hack in the base class.

2006-11-21 23:20  juge

	* mainprogs/main/gbaryonall2all.cc: Subsets are used to make the
	  contraction at the source faster.

2006-11-21 23:17  juge

	* lib/meas/hadron/: baryon_operator.h, baryon_operator_factory_w.h,
	  group_baryon_operator_w.cc, group_baryon_operator_w.h,
	  simple_baryon_operator_w.cc: The contraction at the source is
	  faster now if eigenvectors are not used.

2006-11-21 14:45  edwards

	* lib/meas/sources/mom_source_const.cc: Added sanity check of
	  mom.size().

2006-11-21 14:36  edwards

	* lib/meas/hadron/npr_vertex_w.cc: Bug fix - only gamma_5 adjoint B
	  at the top level.

2006-11-21 13:42  edwards

	* lib/meas/hadron/npr_vertex_w.cc: Inserted missing "pop" in
	  writing "Vertex".

2006-11-21 09:34  bjoo

	* other_libs/cg-dwf/: aclocal.m4, configure, configure.ac: Added
	  -mbluelight flag to the BG/L build

2006-11-21 00:20  kostas

	* lib/: meas/smear/quark_displacement_aggregate.cc,
	  meas/smear/quark_flavor_s.cc, meas/smear/quark_flavor_s.h,
	  util/ferm/staggered_operators_s.cc,
	  util/ferm/staggered_operators_s.h: compiles and runs...

2006-11-20 23:07  edwards

	* lib/meas/inline/hadron/inline_apply_fermstate_w.h: Changed
	  doxygen comments.

2006-11-20 17:22  kostas

	* lib/meas/smear/quark_displacement_aggregate.cc: [no log message]

2006-11-20 17:13  kostas

	* aclocal.m4, lib/Makefile.am, lib/meas/smear/quark_flavor_s.cc,
	  lib/meas/smear/quark_flavor_s.h: flavored source

2006-11-20 16:02  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.h,
	  eoprec_dwf_qprop_array_cg_dwf_w.h: Added timing calls around the
	  AVP interface

2006-11-20 14:43  bjoo

	* aclocal.m4, configure: Re autoconfiscated with automake192

2006-11-20 14:27  bjoo

	* tests/t_leapfrog/t_leapfrog_component.prec_wilson.ini.xml: New
	  Way

2006-11-20 14:25  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  mainprogs/tests/t_leapfrog_component.cc: Checked in new MD Stuff

2006-11-20 14:15  bjoo

	* lib/update/molecdyn/integrator/: abs_integrator.h,
	  integrator_shared.cc, integrator_shared.h, lcm_exp_sdt.cc,
	  lcm_exp_sdt.h, lcm_exp_tdt.cc, lcm_exp_tdt.h,
	  lcm_integrator_leaps.cc, lcm_integrator_leaps.h,
	  lcm_min_norm2_recursive.cc, lcm_min_norm2_recursive.h,
	  lcm_sts_leapfrog_recursive.cc, lcm_sts_leapfrog_recursive.h,
	  lcm_toplevel_integrator.h, md_integrator_factory.h: Added in
	  parallel structure for new way of doing things

2006-11-20 14:12  bjoo

	* lib/update/molecdyn/hamiltonian/: abs_hamiltonian.h,
	  exact_hamiltonian.cc, exact_hamiltonian.h: Added parallel chain
	  for new way of doing things

2006-11-20 11:22  edwards

	* lib/util/ferm/transf.cc: Fixed double prec. CvToFerm with
	  colorvec -> stag-ferm.

2006-11-19 11:35  edwards

	* mainprogs/tests/t_disc_loop_s.cc: Fixed struct names to compile.

2006-11-19 08:10  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: term_q.disp_len was
	  already stored as negative for sources.

2006-11-19 07:34  juge

	* mainprogs/main/gbaryonall2all.cc: Smearing at the sink is only
	  done once now for speed.

2006-11-19 00:01  kostas

	* lib/: Makefile.am, util/ferm/staggered_operators_s.cc: compiles

2006-11-18 23:59  edwards

	* mainprogs/tests/t_propagator_s.cc: Fixes to make compile.

2006-11-18 23:42  kostas

	* lib/util/ferm/staggered_operators_s.cc: needs debugging

2006-11-18 02:39  kostas

	* lib/util/ferm/: staggered_operators_s.cc,
	  staggered_operators_s.h: almost done...

2006-11-18 01:43  juge

	* lib/meas/hadron/: group_baryon_operator_w.cc,
	  group_baryon_operator_w.h: GroupBaryonOp has been cleaned up and
	  smearing has been put in for both quark and gauge.

2006-11-18 00:55  juge

	* mainprogs/main/gbaryonall2all.cc: Quark and Gauge Link smearing
	  added.

2006-11-18 00:41  kostas

	* lib/util/ferm/: staggered_operators_s.cc,
	  staggered_operators_s.h: first pass

2006-11-17 23:56  kostas

	* lib/meas/inline/hadron/inline_stag_to_wils.cc: touch up

2006-11-17 23:40  kostas

	* aclocal.m4, lib/Makefile.am,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_stag_to_wils.cc,
	  lib/meas/inline/hadron/inline_stag_to_wils.h: added new task

2006-11-17 21:48  kostas

	* lib/actions/ferm/invert/invcg1.cc: [no log message]

2006-11-17 21:46  kostas

	* lib/actions/ferm/qprop/eoprec_staggered_qprop.h: fixed true
	  residual

2006-11-17 21:33  kostas

	* lib/actions/ferm/linop/: asq_dsl_s.cc, asqtad_linop_s.cc: added
	  flop count

2006-11-17 16:03  kostas

	* lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/qprop/eoprec_staggered_qprop.h,
	  other_libs/cg-dwf/aclocal.m4: [no log message]

2006-11-17 11:23  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Added printout of
	  xml_file

2006-11-17 11:20  edwards

	* tests/chroma/hadron/mres/mres.out.xml: Updated output.

2006-11-17 09:39  edwards

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc,
	  mainprogs/tests/t_disc_loop_s.cc,
	  mainprogs/tests/t_propagator_s.cc: Added fixes for new use of
	  Asqtad fermact.

2006-11-17 09:23  bjoo

	* other_libs/cg-dwf/: acinclude.m4, aclocal.m4,
	  cg-dwf-config-internal.h.in, cg-dwf-config.in, configure,
	  configure.ac: Fixed some autoconf magic and the cg-dwf-config.in
	  script

2006-11-16 21:55  edwards

	* lib/meas/smear/: deriv_quark_displacement_s.cc,
	  deriv_quark_displacement_s.h, quark_displacement_aggregate.cc:
	  Added staggered derivatives/displacements.

2006-11-16 21:54  edwards

	* lib/actions/ferm/linop/: asqtad_linop_s.cc, asqtad_linop_s.h:
	  Added call to nflops, but currently returns 0.

2006-11-16 21:53  edwards

	* lib/Makefile.am: Added deriv_quark_displacement_s.*

2006-11-16 21:53  edwards

	* tests/chroma/hadron_s/make_source/: make_source_s.ini.xml,
	  make_source_s.metric.xml, make_source_s.out.xml: Updated test.

2006-11-16 21:17  edwards

	* lib/: actions/boson/operator/klein_gord.cc,
	  actions/boson/operator/klein_gord.h,
	  actions/ferm/fermacts/asqtad_fermact_s.cc,
	  actions/ferm/fermacts/asqtad_fermact_s.h,
	  actions/ferm/fermacts/fermact_factory_s.h,
	  actions/ferm/fermacts/fermacts_aggregate_s.cc,
	  actions/ferm/fermacts/fermacts_aggregate_s.h,
	  actions/ferm/fermacts/fermacts_s.h,
	  actions/ferm/fermstates/ferm_createstate_aggregate_s.h,
	  meas/inline/hadron/inline_mres_w.cc,
	  meas/inline/hadron/inline_qpropqio_w.cc,
	  meas/inline/hadron/inline_qqbar_w.cc,
	  meas/inline/hadron/inline_qqq_w.cc,
	  meas/inline/hadron_s/hadron_s.h,
	  meas/inline/hadron_s/inline_hadron_aggregate_s.cc,
	  meas/inline/hadron_s/inline_make_source_s.cc,
	  meas/inline/hadron_s/inline_make_source_s.h,
	  meas/inline/hadron_s/inline_propagator_s.cc,
	  meas/inline/hadron_s/inline_propagator_s.h,
	  meas/inline/hadron_s/inline_sink_smear_s.cc,
	  meas/inline/hadron_s/inline_sink_smear_s.h,
	  meas/inline/hadron_s/inline_spectrum_s.cc,
	  meas/sinks/pt_sink_smearing.cc, meas/sinks/sh_sink_smearing.cc,
	  meas/sinks/sink_smearing_factory.h,
	  meas/smear/gaus_quark_smearing.cc, meas/smear/gaus_smear.cc,
	  meas/smear/gaus_smear.h, meas/smear/no_quark_displacement.cc,
	  meas/smear/no_quark_smearing.cc,
	  meas/smear/quark_displacement_factory.h,
	  meas/smear/quark_smearing_factory.h,
	  meas/smear/simple_quark_displacement.cc,
	  meas/sources/pt_source_const.cc, meas/sources/sh_source_const.cc,
	  meas/sources/source_const_factory.h: Added staggered support in a
	  new make_source, propagator, sink_smearing chain.  Fixed up
	  asqtad_fermact to fit in this model.

2006-11-16 21:14  edwards

	* configure.ac: Changed to 3.20.0

2006-11-16 21:14  edwards

	* aclocal.m4, configure: Induced changes

2006-11-16 21:11  edwards

	* lib/Makefile.am: Added staggered versions of make_source,
	  propagator, and sink_smearing.

2006-11-16 21:10  edwards

	* tests/: regres.pl,
	  chroma/hadron_s/make_source/make_source_s.ini.xml,
	  chroma/hadron_s/make_source/make_source_s.metric.xml,
	  chroma/hadron_s/make_source/make_source_s.out.xml,
	  chroma/hadron_s/make_source/regres.pl,
	  chroma/hadron_s/propagator/asqtad.ini.xml,
	  chroma/hadron_s/propagator/asqtad.metric.xml,
	  chroma/hadron_s/propagator/asqtad.out.xml,
	  chroma/hadron_s/propagator/regres.pl,
	  chroma/hadron_s/sink_smear/sink_smearing_s.ini.xml,
	  chroma/hadron_s/sink_smear/sink_smearing_s.metric.xml,
	  chroma/hadron_s/sink_smear/sink_smearing_s.out.xml,
	  chroma/hadron_s/sink_smear/regres.pl: New staggered regression
	  tests.

2006-11-16 15:39  bjoo

	* lib/: Makefile.am, actions/ferm/linop/lwldslash_array_pab_w.cc,
	  actions/ferm/linop/lwldslash_w_pab.cc, io/monomial_io.cc,
	  io/monomial_io.h, update/molecdyn/hamiltonian/abs_hamiltonian.h:
	  Added Timing Hacks

2006-11-16 15:39  bjoo

	* lib/actions/ferm/invert/: invcg2_timing_hacks.cc,
	  invcg2_timing_hacks.h, syssolver_linop_aggregate.cc,
	  syssolver_linop_cg_timing.cc, syssolver_linop_cg_timing.h,
	  syssolver_mdagm_aggregate.cc, syssolver_mdagm_cg_timing.cc,
	  syssolver_mdagm_cg_timing.h: Timing Hacks

2006-11-16 14:49  kostas

	* lib/actions/ferm/fermacts/: asqtad_fermact_params_s.cc,
	  asqtad_fermact_params_s.h: asqtad parameters

2006-11-09 22:10  edwards

	* lib/meas/sources/mom_source_const.cc: Changed walfil call to an
	  internal call for a boxfil.

2006-11-09 21:37  edwards

	* lib/meas/hadron/group_baryon_operator_w.cc: Commented out
	  debugging comment in registration.

2006-11-08 18:54  bjoo

	* lib/Makefile.am: Makefile.am etc

2006-11-08 18:51  bjoo

	* tests/t_leapfrog/t_leapfrog_component.prec_wilson.ini.xml:
	  modified component ini file

2006-11-08 18:48  bjoo

	* lib/update/molecdyn/integrator/: lcm_sts_leapfrog_component.cc,
	  lcm_sts_leapfrog_component.h: I removed the component versions
	  now that the recursive versions can cope with a base case

2006-11-08 18:46  bjoo

	* lib/update/molecdyn/integrator/: integrator_aggregate.cc,
	  lcm_min_norm2_recursive.cc, lcm_min_norm2_recursive.h,
	  lcm_sts_leapfrog_component.cc, lcm_sts_leapfrog_recursive.cc:
	  Minimum norm integrators

2006-11-07 21:47  edwards

	* tests/regres.pl: Added static_light regression tests.

2006-11-07 21:46  edwards

	* tests/chroma/hadron/static_light/: static_light.dat.xml,
	  static_light.metric.xml, static_light.out.xml,
	  static_light_pot.dat.xml, static_light_pot.metric.xml,
	  static_light_pot.out.xml: New regression tests.

2006-11-07 18:16  bjoo

	* configure, lib/update/molecdyn/hmc/abs_hmc.h,
	  mainprogs/tests/t_leapfrog.cc,
	  tests/t_leapfrog/t_leapfrog_component.prec_wilson.ini.xml: commit
	  of Makefile.ins

2006-11-07 18:16  bjoo

	* aclocal.m4, lib/Makefile.am, mainprogs/tests/Makefile.am: commit
	  of Makefile.am etc

2006-11-07 18:14  bjoo

	* tests/t_leapfrog/t_leapfrog_component.prec_wilson.log.xml: Test
	  Files for Component integrator program t_leapfrog_component

2006-11-07 18:12  bjoo

	* mainprogs/tests/t_leapfrog_component.cc: New t-leapfrog for
	  component inegrator testing

2006-11-07 18:11  edwards

	* tests/chroma/hadron/static_light/regres.pl: Added tests.

2006-11-07 18:11  bjoo

	* lib/update/molecdyn/integrator/: abs_integrator.h,
	  integrator_aggregate.cc, integrator_aggregate.h, lcm_exp_sdt.cc,
	  lcm_exp_sdt.h, lcm_exp_tdt.cc, lcm_exp_tdt.h,
	  lcm_minimum_norm2_integrator.h,
	  lcm_minimum_norm2_integrator_mts.h,
	  lcm_minimum_norm2_qpq_integrator_mts.h, lcm_pqp_leapfrog_mts.h,
	  lcm_sexton_weingarten.h, lcm_sts_leapfrog_component.cc,
	  lcm_sts_leapfrog_component.h, lcm_sts_leapfrog_recursive.cc,
	  lcm_sts_leapfrog_recursive.h, md_integrator_factory.h: New
	  Integrator bits

2006-11-07 18:09  edwards

	* tests/chroma/hadron/static_light/: static_light.metric.xml,
	  static_light_pot.metric.xml: Fixed tests.

2006-11-07 17:36  edwards

	* mainprogs/main/propagator_comp.cc: Removed Log info.

2006-11-07 16:50  edwards

	* mainprogs/: tests/t_formfac.cc, tests/t_mesons_w.cc,
	  main/collect_multi_propcomp.cc, main/multi_propagator_comp.cc:
	  Removed Log stuff.

2006-11-07 16:40  edwards

	* mainprogs/main/Makefile.am: Demoted some programs to
	  check_PROGRAMS instead of bin_PROGRAMS. They are not in active
	  use and just take up disk space. They are built as a part of make
	  check.

2006-11-07 00:26  tag chroma3-19-1

2006-11-07 00:26  edwards

	* aclocal.m4, configure: Induced changes

2006-11-07 00:25  edwards

	* configure.ac: Changed to 3.19.1

2006-11-07 00:25  edwards

	* NEWS: Info on 3.19.1

2006-11-07 00:22  edwards

	* lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: Fixed
	  adding of cg counts to res.n_count - sum both single and double.

2006-11-06 23:02  edwards

	* tests/chroma/hadron/static_light/static_light.metric.xml: First
	  pass - not finished yet.

2006-11-06 12:22  juge

	* mainprogs/main/gbaryonall2all.cc: Driver file which works without
	  any smearing.

2006-11-06 12:14  juge

	* lib/meas/hadron/: group_baryon_operator_w.cc,
	  group_baryon_operator_w.h: Input has changed (as well as the perl
	  script that makes the input file). This version appears to work
	  if I leave out the smearings.

2006-11-04 00:38  edwards

	* README: Small update on current versions.

2006-11-04 00:12  edwards

	* lib/meas/sources/mom_source_const.cc: Fixes. No compiles.

2006-11-04 00:08  edwards

	* lib/Makefile.am: Added mom_source_const.{h,cc}

2006-11-04 00:06  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added Npr
	  vertex.

2006-11-04 00:04  edwards

	* lib/meas/sources/source_const_aggregate.cc: Added momentum-wall.

2006-11-03 23:42  edwards

	* lib/meas/hadron/npr_vertex_w.cc: Fixed write of scalar.

2006-11-03 15:21  hwlin

	* lib/meas/inline/hadron/inline_npr_w.h: Induced Changes

2006-11-03 15:18  hwlin

	* lib/: Makefile.am, meas/hadron/npr_vertex_w.h,
	  meas/hadron/npr_vertex_w.cc,
	  meas/inline/hadron/inline_npr_vertex_w.cc: Added npr_vertex.xx
	  and inline_npr_vertex_w.xx to the build and made them compile.
	  There is a QIO annoyance left in npr_vertex_w.cc where we want to
	  IO just one sites worth of propagator.

2006-11-03 10:22  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Added another clover
	  term variant.

2006-11-02 17:29  edwards

	* lib/meas/inline/hadron/inline_npr_vertex_w.cc: Changed named of
	  task.

2006-11-02 17:26  edwards

	* lib/meas/: hadron/npr_vertex_w.cc, hadron/npr_vertex_w.h,
	  inline/hadron/inline_npr_vertex_w.cc,
	  inline/hadron/inline_npr_vertex_w.h: Near complete version - not
	  yet tested or compiled.

2006-11-02 14:24  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Added unrolled
	  version of clover term.

2006-10-31 23:42  edwards

	* lib/meas/hadron/group_baryon_operator_w.cc: Removed some
	  debugging. Indented some.

2006-10-31 16:10  bjoo

	* install_scripts/chroma-3.17.spec: Added SPECS file for building
	  scalar RPM

2006-10-31 10:01  tag chroma3-19-0

2006-10-31 10:01  edwards

	* NEWS: Info on 3.19.0

2006-10-31 10:00  edwards

	* NEWS: Info on 3.18.0

2006-10-30 17:32  edwards

	* lib/meas/hadron/npr_vertex_w.h: Fix.

2006-10-30 17:31  edwards

	* lib/meas/: hadron/npr_vertex_w.cc, hadron/npr_vertex_w.h,
	  inline/hadron/inline_npr_vertex_w.cc,
	  inline/hadron/inline_npr_vertex_w.h: First versions of NPR code.

2006-10-30 16:59  edwards

	* lib/meas/sources/: mom_source_const.cc, mom_source_const.h,
	  source_const_aggregate.cc: Added momentum wall sources.

2006-10-28 01:13  kostas

	* lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: bit
	  more..

2006-10-28 00:42  kostas

	* lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: little
	  more progress

2006-10-27 00:12  kostas

	* lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: added
	  the make source bit for the derivative source

2006-10-26 23:02  juge

	* lib/meas/hadron/group_baryon_operator_w.h: disp_ind added to
	  QuarkTerm_t to index disp_quarks.

2006-10-26 23:01  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: disp_ind added to
	  QuarkTerm_t for use with disp_quarks.

2006-10-26 17:20  kostas

	* lib/meas/inline/hadron/: inline_npr_w.cc, inline_npr_w.h: initial
	  version

2006-10-26 00:36  kostas

	* lib/meas/hadron/BuildingBlocks_w.cc: Fixed up the translation
	  flag. Code is working on free field

2006-10-24 17:58  edwards

	* lib/meas/hadron/group_baryon_operator_w.cc: Changed debugging
	  comments to use QDPIO::cout instead of just cout.

2006-10-24 00:45  edwards

	* lib/actions/ferm/invert/minvcg.cc: Added memory hints.

2006-10-24 00:32  edwards

	* lib/actions/ferm/invert/minvcg.cc: Make sure to stop timer in
	  trivial case.

2006-10-24 00:23  edwards

	* lib/actions/ferm/invert/minvcg.cc: Added timing and flopcount.

2006-10-23 14:03  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: The source file with
	  only one term in the sink operator.  Not complete yet.

2006-10-23 14:02  juge

	* lib/meas/hadron/group_baryon_operator_w.h: Newer version with
	  only one term for the sink operator.	(and other corrections)

2006-10-23 14:00  juge

	* mainprogs/main/gbaryonall2all.cc: A template file for the driver
	  for all-to-all group baryon operators program.

2006-10-22 17:31  edwards

	*
	  lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial_w.cc:
	  Removed debugging cout statement.

2006-10-20 17:29  edwards

	* tests/chroma/hadron/propagator/: prec_clover-stout3d.metric.xml,
	  prec_clover-stout3d.out.xml, regres.pl: Added stout smear state.

2006-10-20 12:57  edwards

	* lib/util/gauge/stout_utils.cc: Removed diagnostic comment.

2006-10-19 13:42  edwards

	* lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h: More
	  pathname fixes.

2006-10-19 13:39  edwards

	* lib/actions/ferm/qprop/dwf_qpropt_w.h: Pathname fixes.

2006-10-19 13:36  edwards

	* lib/: actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/qprop/asqtad_qprop.h,
	  actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  actions/ferm/qprop/staggered_qprop.cc,
	  update/molecdyn/monomial/monomial_aggregate_w.cc: Pathname fixes.

2006-10-19 12:02  edwards

	* aclocal.m4, configure: Induced changes

2006-10-19 12:01  edwards

	* configure, configure.ac, lib/Makefile.am, lib/eo_linop.h,
	  lib/eo_prec_linop.h, lib/eoprec_constdet_linop.h,
	  lib/eoprec_constdet_wilstype_fermact_w.h, lib/eoprec_linop.h,
	  lib/eoprec_logdet_linop.h,
	  lib/eoprec_logdet_wilstype_fermact_w.h,
	  lib/eoprec_wilstype_fermact_w.h, lib/fermact.h,
	  lib/fermact.orig.h, lib/lib.h, lib/linearop.h, lib/lmdagm.h,
	  lib/polyfermact.h, lib/prec_constdet_linop.h,
	  lib/prec_logdet_linop.h, lib/stagtype_fermact_s.h,
	  lib/teoprec_linop.h, lib/teoprec_logdet_linop.h,
	  lib/tprec_linop.h, lib/tprec_logdet_linop.h, lib/tpreclinop.h,
	  lib/unprec_wilstype_fermact_w.h, lib/wilstype_fermact_w.h,
	  lib/wilstype_polyfermact_w.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/eoprec_clover_extfield_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_clover_extfield_fermact_w.h,
	  lib/actions/ferm/fermacts/eoprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/eoprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/eoprec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/eoprec_slic_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_slic_fermact_w.h,
	  lib/actions/ferm/fermacts/eoprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/eoprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/eoprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/eoprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/fermact_factory_w.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_slic_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_slic_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/stag_fermact_s.h,
	  lib/actions/ferm/fermacts/tprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/tprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_w12_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/eoprec_clover_extfield_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_clover_extfield_linop_w.h,
	  lib/actions/ferm/linop/eoprec_clover_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_clover_linop_w.h,
	  lib/actions/ferm/linop/eoprec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/eoprec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_opt_w.h,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/eoprec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/eoprec_parwilson_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/eoprec_slic_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_slic_linop_w.h,
	  lib/actions/ferm/linop/eoprec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/eoprec_wilson_linop_w.h,
	  lib/actions/ferm/linop/lDeltaLs_w.h,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.h,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/lovddag_double_pass_w.h,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlap_double_pass_w.h,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/ovlap_contfrac5d_w.h,
	  lib/actions/ferm/linop/prec_clover_extfield_linop_w.cc,
	  lib/actions/ferm/linop/prec_clover_extfield_linop_w.h,
	  lib/actions/ferm/linop/prec_clover_linop_w.cc,
	  lib/actions/ferm/linop/prec_clover_linop_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/prec_slic_linop_w.cc,
	  lib/actions/ferm/linop/prec_slic_linop_w.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  lib/actions/ferm/linop/tprec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/tprec_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.cc,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_altivec_w.h,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.cc,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_cg_dwf_w.h,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/eoprec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/eoprec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/eoprec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/eoprec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/eoprec_staggered_qprop.h,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/prec_staggered_qprop.h,
	  lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_s.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/update/molecdyn/monomial/abs_monomial.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polynomial_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polyprec_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_constdet_two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/eoprec_logdet_ee_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_logdet_ee_monomial_w.h,
	  lib/update/molecdyn/monomial/eoprec_logdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/eoprec_logdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/monomial_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h:
	  Split apart the fermact.h file into lots of separate bits to make
	  it easier to manage. Split up the linearop.h file more as well.
	  Split up and rearranged the tprec_linop.h files for the
	  anticipated new time-preconditioning. Added some new
	  functionality here.  For neatness sake, moved and renamed all the
	  "prec_*" files (which are specific to 4d even-odd
	  preconditioning) to "eoprec_*" filenames.

2006-10-19 11:07  tag chroma3-18-0

2006-10-19 11:07  edwards

	* aclocal.m4, configure: Induced changes

2006-10-19 11:07  edwards

	* configure.ac: Changed to 3.18.0

2006-10-18 23:09  edwards

	* configure: Induced changes

2006-10-18 23:06  edwards

	* aclocal.m4: Induced changes

2006-10-17 16:06  kostas

	* tests/chroma/hadron/static_light/: static_light_pot.dat.xml,
	  static_light_pot.out.xml: new output

2006-10-17 16:03  kostas

	* tests/chroma/hadron/static_light/static_light_pot.ini.xml:
	  modified the input

2006-10-17 15:46  kostas

	* lib/meas/inline/hadron/inline_static_light_spec_w.cc: fixed xml
	  tag

2006-10-17 14:25  kostas

	* tests/chroma/hadron/static_light/: static_light_pot.dat.xml,
	  static_light_pot.ini.xml, static_light_pot.out.xml: static meson
	  potential

2006-10-17 14:08  kostas

	* tests/chroma/hadron/static_light/: static_light.dat.xml,
	  static_light.ini.xml, static_light.out.xml: Test input for static
	  light

	  VS:
	  ----------------------------------------------------------------------

2006-10-17 12:19  kostas

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: registered
	  static light

2006-10-17 11:53  kostas

	* lib/meas/inline/hadron/inline_static_light_spec_w.cc: fixed typo

2006-10-17 11:43  kostas

	* lib/meas/inline/hadron/: inline_static_light_spec_w.cc,
	  inline_static_light_spec_w.h: added static light inline

2006-10-17 11:38  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc:
	  ...

2006-10-17 11:34  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_hadron_aggregate.cc:
	  added static light inline measurement

2006-10-17 11:29  kostas

	* aclocal.m4: fixed makefiles again..

2006-10-17 11:25  kostas

	* lib/Makefile.am: fixed makefile

2006-10-17 11:20  kostas

	* lib/: Makefile.am, meas/hadron/hadron_w.h: Added meson potential
	  into Makefiles and headers

2006-10-17 10:05  kostas

	* lib/meas/hadron/barQll_w.cc: fixe typo

2006-10-17 10:04  kostas

	* other_libs/cg-dwf/: aclocal.m4, configure, configure.ac: fixed
	  autoconf bug for Mac OS X

2006-10-17 09:23  kostas

	* lib/meas/hadron/: barQll_w.cc, barQll_w.h: modified barQll to do
	  full su(3) multiplet

2006-10-15 23:47  kostas

	* lib/meas/hadron/: mesQlPOT_w.cc, mesQlPOT_w.h: Added heavy-light
	  potential... needs work to be added into the Qll spectrum

2006-10-15 12:18  edwards

	* install_scripts/jlab/config_chroma_scalar.sh: Updated scripts

2006-10-15 02:16  tag chroma3-17-0

2006-10-15 02:16  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Turned
	  off restarts - doing something funny.

2006-10-15 02:00  edwards

	* NEWS: Info on 3.17.0

2006-10-15 01:59  edwards

	* tests/chroma/hadron/propagator/: prec_dwf.ini.xml,
	  prec_dwf.out.xml: Updated.

2006-10-15 01:47  edwards

	* tests/chroma/hadron/propagator/prec_dwf.ini.xml: Changed
	  numRestarts=2

2006-10-15 01:46  edwards

	* tests/chroma/hadron/propagator/prec_dwf.ini.xml: Added a
	  numRestarts flag in the invertParam group.

2006-10-15 00:17  edwards

	* lib/actions/ferm/: invert/syssolver_cg_params.cc,
	  invert/syssolver_cg_params.h, invert/syssolver_linop_cg.h,
	  invert/syssolver_linop_cg_array.h, invert/syssolver_mdagm_cg.h,
	  invert/syssolver_mdagm_cg_array.h,
	  qprop/prec_dwf_qprop_array_cg_dwf_w.h: Added restarts.

2006-10-14 23:24  edwards

	* NEWS: Info on 3.17.0

2006-10-14 18:29  edwards

	* other_libs/cg-dwf/: AUTHORS, COPYING, INSTALL, Makefile.am,
	  Makefile.original, NEWS, README, acinclude.m4, aclocal.m4,
	  algorithm2e.sty, cg-dwf-config-internal.h.in, cg-dwf-config.h,
	  cg-dwf-config.in, configure, configure.ac, dwf-altivecf.c,
	  dwf-altivecf.h, dwf-bluelightd.c, dwf-bluelightd.h,
	  dwf-bluelightf.c, dwf-bluelightf.h, dwf-ssed.c, dwf-ssed.h,
	  dwf-ssef.c, dwf-ssef.h, dwf-tables.h, dwf.c, dwf.nw, dwf.pdf,
	  interface.nw, interface.pdf: Induced changes

2006-10-14 18:25  edwards

	* other_libs/cg-dwf/configure: Induced changes

2006-10-14 18:23  edwards

	* other_libs/cg-dwf/Makefile.am: Added include of
	  cg-dwf-config-internal.h

2006-10-14 13:26  kostas

	* lib/meas/hadron/BuildingBlocks_w.cc:
	  no comment...

2006-10-14 01:07  edwards

	* tests/chroma/hadron/noisy_building_blocks/: nbb.dat_0.xml,
	  nbb.dat_1.xml, nbb.out.xml: Updated.

2006-10-14 01:06  edwards

	* tests/chroma/hadron/building_blocks/: bb.ini.xml, bb.out.xml:
	  Updated output.

2006-10-14 01:03  edwards

	* lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc: Added
	  dummy Tsrc,Tsnk.

2006-10-14 00:54  edwards

	* lib/meas/inline/hadron/: hadron.h: Removed spectrum.

2006-10-14 00:52  edwards

	* lib/meas/: hadron/BuildingBlocks_w.cc, hadron/BuildingBlocks_w.h,
	  inline/hadron/inline_building_blocks_w.cc,
	  inline/hadron/inline_building_blocks_w.h,
	  inline/hadron/inline_noisy_building_blocks_w.cc: Added Translate
	  (ShiftFlag) and Tsrc, Tsnk.

2006-10-14 00:19  edwards

	* lib/meas/inline/hadron/: inline_spectrum_w.cc,
	  inline_spectrum_w.h: Put in obsolete messages.

2006-10-14 00:11  edwards

	* tests/regres.pl: Removed spectrum.

2006-10-14 00:11  edwards

	* tests/chroma/: hadron/mesonspec/mesonspec.out.xml,
	  hadron/mres/mres.out.xml,
	  hadron/stoch_baryon/stoch_baryon.out.xml,
	  hadron/stoch_meson/stoch_meson.out.xml,
	  hadron_s/spectrum_s/spectrum_s.out.xml, schrfun/schrfun.out.xml:
	  Updated output.

2006-10-14 00:10  kostas

	* lib/meas/hadron/BuildingBlocks_w.cc: Works only for t_src=12 and
	  NT=16. Robert please fix the values of these variables... also
	  add in a new flag for shifting and a new version for input params
	  for BB. Thanks KNO.

2006-10-14 00:05  edwards

	* tests/chroma/hadron/spectrum/: regres.pl, spectrum.ini.xml,
	  spectrum.metric.xml, spectrum.out.xml: Removed spectrum.

2006-10-13 23:59  edwards

	* lib/Makefile.am: Turned off spectrum.

2006-10-13 23:57  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Turned off
	  (but not removed) use of Spectrum

2006-10-13 23:56  edwards

	* lib/meas/inline/hadron/: hadron.h, inline_hadron_aggregate.cc,
	  inline_spectrumOct_w.cc, inline_spectrumOct_w.h: Removed
	  inline_spectrumOct.

2006-10-13 23:51  edwards

	* tests/regres.pl, lib/Makefile.am: Removed spectrumOct.

2006-10-13 23:50  edwards

	* tests/chroma/hadron/spectrumOct/: regres.pl,
	  spectrumOct-v11.ini.xml, spectrumOct-v11.metric.xml,
	  spectrumOct-v11.out.xml: Removed.

2006-10-13 23:48  edwards

	* tests/chroma/hadron/spectrum/spectrum.out.xml: Switched output
	  back to real.

2006-10-13 23:46  edwards

	* tests/chroma/hadron/seqsource/: seqsource-baryon.out.xml,
	  seqsource-meson.out.xml, seqsource-photon.out.xml: Updated
	  output.

2006-10-13 23:40  edwards

	* tests/chroma/hadron/: bar3ptfn/bar3ptfn.out.xml,
	  building_blocks/bb.out.xml, hadspec/hadspec.out.xml,
	  noisy_building_blocks/nbb.out.xml,
	  propagator/prec_clover.out.xml, propagator/prec_dwf.out.xml,
	  propagator/prec_ht_contfrac5d.out.xml,
	  propagator/prec_ovext.out.xml,
	  propagator/prec_ovlap_contfrac5d.out.xml,
	  propagator/prec_parwilson.out.xml,
	  propagator/prec_wilson-smearing.out.xml,
	  propagator/prec_wilson-twisted.out.xml,
	  propagator/prec_wilson.ferm.metric.xml,
	  propagator/prec_wilson.ferm.out.xml,
	  propagator/prec_wilson.out.xml, propagator/prec_zolo_nef.out.xml,
	  propagator/regres.pl, propagator/unprec-ovlap-zolo4d.out.xml,
	  propagator/unprec-zolo-ev-multi.out.xml,
	  propagator/unprec_clover.out.xml,
	  propagator/unprec_dwftransf.out.xml,
	  propagator/unprec_hamberwu.out.xml,
	  propagator/unprec_ovext.out.xml,
	  propagator/unprec_ovlap_contfrac5d.out.xml,
	  propagator/unprec_zolo_nef.out.xml,
	  sink_smear/sink-deriv.out.xml, sink_smear/sink-displace.out.xml,
	  sink_smear/sink_smearing.out.xml: Updated output.

2006-10-13 23:38  edwards

	* lib/meas/hadron/mesons_w.cc: Put the old "real" output back in
	  front of this routine. George Fleming had made it complex, I make
	  it write real (again). It is mesons2_w.cc that writes complex.

2006-10-13 22:43  edwards

	* aclocal.m4, configure: Induced changes

2006-10-13 22:42  edwards

	* lib/io/qprop_io.cc: Changed ChromaProp output format back to
	  version 9.

2006-10-13 22:41  edwards

	* configure.ac: Changed to 3.17.0

2006-10-13 11:16  juge

	* lib/meas/hadron/group_baryon_operator_w.h: The header file that
	  goes with the new group_baryon_operator_w.cc

2006-10-13 11:15  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: Three quark
	  propagators have been manipulated before being translated to
	  all-to-all (which should be correct and have less noise?). The
	  correlation function is now comprised of a single term despite
	  the need for two different quark diagrams (?). This version did
	  compile ...

2006-10-11 11:42  edwards

	* lib/: fermact.h,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  actions/ferm/qprop/dwf_quarkprop4_w.h,
	  actions/ferm/qprop/nef_quarkprop4_w.cc,
	  actions/ferm/qprop/nef_quarkprop4_w.h,
	  actions/ferm/qprop/quarkprop4_s.cc,
	  actions/ferm/qprop/quarkprop4_s.h,
	  actions/ferm/qprop/quarkprop4_w.cc,
	  actions/ferm/qprop/quarkprop4_w.h, io/qprop_io.cc, io/qprop_io.h,
	  meas/inline/hadron/inline_propagator_w.cc: Removed use of
	  numRetries !! This was a misguided attempt to get restarts into
	  the code. Will try another way via the system solvers and the
	  InvertParam xml group.

2006-10-11 10:06  edwards

	* lib/meas/inline/hadron/: inline_noisy_building_blocks_w.cc,
	  inline_noisy_building_blocks_w.h: Updated to match
	  inline_building_blocks.

2006-10-11 09:55  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Fixed ";" typo.

2006-10-11 09:44  edwards

	* lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.h,
	  tests/chroma/hadron/building_blocks/bb.ini.xml: Added a
	  time_reverse flag.

2006-10-11 09:44  edwards

	* lib/meas/hadron/: BuildingBlocks_w.cc, BuildingBlocks_w.h: Added
	  a TimeReverse flag for time reversal of the building blocks.	Not
	  implemented yet, though.

2006-10-11 09:31  tag chroma3-16-1

2006-10-11 09:31  edwards

	* NEWS: Info on 3.16.1.

2006-10-11 09:30  edwards

	* aclocal.m4, configure: Induced changes

2006-10-11 09:30  edwards

	* configure.ac: Changed to 3.16.1

2006-10-11 09:27  edwards

	* lib/meas/hadron/hadron_seqsource.cc: Added missing template<>

2006-10-10 23:45  tag chroma3-16-0

2006-10-10 23:45  edwards

	* NEWS: Info on 3.16.0

2006-10-10 17:01  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h,
	  hadron_seqsource.cc, hadron_seqsource.h: Added in get of fermion
	  BC - needed by timeOrder. Rearranged timeOrder's location. Now
	  correct for source spatial phase in seq-sink construction. Should
	  hopefully and correctly fix timeOrder.

2006-10-10 14:32  edwards

	* lib/meas/hadron/: hadron_seqsource.cc, hadron_seqsource.h: Made
	  timeOrder inlined.

2006-10-10 14:27  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h,
	  hadron_seqsource.cc, hadron_seqsource.h: Introduced a
	  time-ordering phase. By default it is a function returning one.
	  For baryon-baryon seqsources, it checks the time-slice ordering.

2006-10-10 13:52  edwards

	* lib/meas/: hadron/barseqsrc_w.cc, hadron/barseqsrc_w.h,
	  hadron/derivmesonseqsrc_w.cc, hadron/derivmesonseqsrc_w.h,
	  hadron/hadron_seqsource.cc, hadron/hadron_seqsource.h,
	  hadron/mesonseqsrc_w.cc, hadron/mesonseqsrc_w.h,
	  hadron/photon_seqsrc_w.cc, hadron/photon_seqsrc_w.h,
	  inline/hadron/inline_seqsource_w.cc: Changed all seqsources so
	  that the full ForwardProp_t struct from the forward props is
	  passed down.

2006-10-10 13:50  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: MAde getTSrce() be of type
	  const

2006-10-10 13:48  edwards

	* aclocal.m4, configure: Induced changes

2006-10-10 13:48  edwards

	* configure.ac: Changed to 3.16.0

2006-10-10 13:13  tag chroma3-15-1

2006-10-10 13:13  edwards

	* aclocal.m4, configure: Induced changes

2006-10-10 13:12  edwards

	* NEWS: Info on 3.15.1

2006-10-10 13:11  edwards

	* configure.ac: Changed to 3.15.1

2006-09-27 14:21  bjoo

	* tests/chroma/glue/gaugestate/gaugestate.metric.xml: Fixed an oops
	  in this

2006-09-26 09:47  edwards

	* tests/chroma/glue/gaugestate/regres.pl: Fixed to point to gauge
	  state tests and not fermstate!

2006-09-24 16:58  edwards

	* lib/actions/gauge/gaugeacts/:
	  plaq_plus_spatial_two_plaq_gaugeact.cc, rect_gaugeact.cc:
	  Rearranged some adj(a*b) expressions to match cliches.

2006-09-21 16:38  bjoo

	* lib/actions/ferm/qprop/dwf_qpropt_w.h: Oops

2006-09-21 16:20  tag chroma3-15-0

2006-09-21 16:20  edwards

	* NEWS: Info on 3.15.0

2006-09-21 16:18  edwards

	* tests/: regres.pl, chroma/glue/gaugestate/gaugestate.ini.xml,
	  chroma/glue/gaugestate/gaugestate.metric.xml,
	  chroma/glue/gaugestate/gaugestate.out.xml,
	  chroma/glue/gaugestate/regres.pl,
	  chroma/hadron/fermstate/fermstate.ini.xml,
	  chroma/hadron/fermstate/fermstate.metric.xml,
	  chroma/hadron/fermstate/fermstate.out.xml,
	  chroma/hadron/fermstate/regres.pl: New gauge and fermion state
	  tests.

2006-09-21 15:45  edwards

	* tests/: chroma/eig/eigbnds-v1.ini.xml,
	  chroma/eig/eigbnds-v1.out.xml, chroma/eig/eigbnds.ini.xml,
	  chroma/eig/eigbnds.metric.xml, chroma/eig/eigbnds.out.xml,
	  chroma/eig/regres.pl, chroma/gfix/coulgauge/coulgauge.ini.xml,
	  chroma/gfix/coulgauge/coulgauge.metric.xml,
	  chroma/gfix/coulgauge/coulgauge.out.xml,
	  chroma/glue/fuzwilp/fuzwilp.ini.xml,
	  chroma/glue/fuzwilp/fuzwilp.metric.xml,
	  chroma/glue/fuzwilp/fuzwilp.out.xml,
	  chroma/glue/wilslp/wilslp.ini.xml,
	  chroma/glue/wilslp/wilslp.metric.xml,
	  chroma/glue/wilslp/wilslp.out.xml,
	  chroma/hadron/propagator/prec_wilson-twisted.ini.xml,
	  chroma/hadron/propagator/prec_wilson-twisted.metric.xml,
	  chroma/hadron/propagator/prec_wilson-twisted.out.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.ini.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.metric.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.out.xml,
	  hmc/hmc.prec_wilson.ini.xml, hmc/hmc.prec_wilson.out.xml,
	  purgaug/purgaug.ini.xml, purgaug/purgaug.out.xml,
	  purgaug/purgaug.sfnonpt.ini.xml, purgaug/purgaug.sfnonpt.out.xml:
	  Updated.

2006-09-21 15:42  edwards

	* lib/: actions/ferm/fermstates/ferm_createstate_aggregate_w.cc,
	  actions/gauge/gaugestates/gauge_createstate_aggregate.cc,
	  meas/inline/glue/inline_wilslp.cc,
	  meas/inline/hadron/inline_building_blocks_w.cc: Fixes.

2006-09-21 15:41  edwards

	* tests/chroma/hadron/building_blocks/: bb.dat.xml, bb.ini.xml,
	  bb.out.xml: Switched to new version with a FermState.

2006-09-21 14:43  edwards

	* tests/: chroma/glue/wilslp/wilslp.ini.xml,
	  chroma/glue/wilslp/wilslp.out.xml, purgaug/purgaug.ini.xml,
	  purgaug/purgaug.sfnonpt.ini.xml: New versions of input.

2006-09-21 14:43  edwards

	* lib/: actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  actions/gauge/gaugebcs/schr_sf_zero_gaugebc.cc,
	  actions/gauge/gaugebcs/schr_sf_zero_gaugebc.h,
	  meas/inline/glue/inline_apply_gaugestate.cc,
	  meas/inline/glue/inline_apply_gaugestate.h,
	  meas/inline/glue/inline_glue_aggregate.cc,
	  meas/inline/glue/inline_plaquette.cc,
	  meas/inline/glue/inline_plaquette.h,
	  meas/inline/glue/inline_polylp.cc,
	  meas/inline/glue/inline_polylp.h,
	  meas/inline/glue/inline_wilslp.cc,
	  meas/inline/glue/inline_wilslp.h,
	  meas/inline/hadron/inline_apply_fermstate_w.cc,
	  meas/inline/hadron/inline_apply_fermstate_w.h,
	  meas/inline/hadron/inline_building_blocks_w.cc,
	  meas/inline/hadron/inline_building_blocks_w.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_propagator_w.cc,
	  meas/inline/hadron/inline_propagator_w.h: Started adding
	  GaugeState and FermState instances in inline measurements.  Also
	  have inline_task variants that apply the gauge and ferm states to
	  a gauge field.

2006-09-21 14:41  edwards

	* aclocal.m4, configure: Induced changes

2006-09-21 14:40  edwards

	* lib/Makefile.am: Added inline_apply_{ferm,gauge}state and
	  schr_sf_zero_gaugebc

2006-09-21 14:40  edwards

	* configure.ac: Changed to 3.15.0

2006-09-21 14:36  tag chroma3-14-7

2006-09-21 14:36  edwards

	* NEWS: Info on 3.14.7

2006-09-21 14:34  edwards

	* aclocal.m4, configure: Induced changes

2006-09-21 14:33  edwards

	* configure.ac: Changed to 3.14.7

2006-09-21 14:33  edwards

	* lib/meas/inline/glue/inline_wilslp.cc: Added registration of
	  create_states.

2006-09-21 10:21  tag chroma3-14-6

2006-09-21 10:21  edwards

	* NEWS: Info on 3.14.6

2006-09-21 10:19  edwards

	* aclocal.m4, configure: Induced changes

2006-09-21 10:18  edwards

	* configure.ac: Changed to 3.14.6

2006-09-20 16:31  edwards

	* lib/actions/ferm/fermstates/: extfield_aggregate_w.cc,
	  extfield_aggregate_w.h, extfield_fermstate_w.cc,
	  ferm_createstate_aggregate_s.cc, ferm_createstate_aggregate_s.h,
	  ferm_createstate_aggregate_w.cc, ferm_createstate_aggregate_w.h,
	  periodic_fermstate_s.cc, periodic_fermstate_s.h,
	  periodic_fermstate_w.cc, periodic_fermstate_w.h,
	  simple_fermstate_s.cc, simple_fermstate_s.h,
	  simple_fermstate_w.cc, simple_fermstate_w.h,
	  stout_fermstate_w.cc, stout_fermstate_w.h: Major housecleaning.
	  Changed all the uses of the registration method to now be
	  **runtime**. The "registerAll()" function is exposed that will
	  register the thingy. There is a private "registered" flag that is
	  initially false and then set to true upon registration done at
	  runtime.

2006-09-20 16:27  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.h,
	  lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.h,
	  lib/actions/ferm/fermacts/ovext_constant_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_constant_strategy.h,
	  lib/actions/ferm/fermacts/ovext_neuberger_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_neuberger_strategy.h,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.cc,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.cc,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_slic_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_slic_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_w12_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_w12_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_s.cc,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_s.h,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_w.cc,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_w.h,
	  lib/actions/ferm/fermbcs/periodic_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/periodic_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_chromomag_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_chromomag_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_coupling_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_coupling_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_nonpert_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_nonpert_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_triv_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_triv_fermbc_w.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_s.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc_s.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.h,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_aggregate.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_aggregate.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.h,
	  lib/actions/ferm/invert/syssolver_linop_cg.cc,
	  lib/actions/ferm/invert/syssolver_linop_cg.h,
	  lib/actions/ferm/invert/syssolver_linop_cg_array.cc,
	  lib/actions/ferm/invert/syssolver_linop_cg_array.h,
	  lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_aggregate.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_array.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/syssolver_polyprec_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_polyprec_aggregate.h,
	  lib/actions/ferm/invert/syssolver_polyprec_cg.cc,
	  lib/actions/ferm/invert/syssolver_polyprec_cg.h,
	  lib/actions/gauge/gaugeacts/aniso_spectrum_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/aniso_spectrum_gaugeact.h,
	  lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc,
	  lib/actions/gauge/gaugeacts/gaugeacts_aggregate.h,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.h,
	  lib/actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_aggregate.h,
	  lib/actions/gauge/gaugebcs/periodic_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/periodic_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_chromomag_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_chromomag_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_coupling_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_coupling_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_nonpert_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_nonpert_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_triv_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_triv_gaugebc.h,
	  lib/actions/gauge/gaugebcs/simple_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/simple_gaugebc.h,
	  lib/actions/gauge/gaugestates/gauge_createstate_aggregate.cc,
	  lib/actions/gauge/gaugestates/gauge_createstate_aggregate.h,
	  lib/actions/gauge/gaugestates/periodic_gaugestate.cc,
	  lib/actions/gauge/gaugestates/periodic_gaugestate.h,
	  lib/actions/gauge/gaugestates/simple_gaugestate.cc,
	  lib/actions/gauge/gaugestates/simple_gaugestate.h,
	  lib/actions/gauge/gaugestates/stout_gaugestate.cc,
	  lib/actions/gauge/gaugestates/stout_gaugestate.h,
	  lib/meas/hadron/barseqsrc_w.cc, lib/meas/hadron/barseqsrc_w.h,
	  lib/meas/hadron/baryon_operator_aggregate_w.cc,
	  lib/meas/hadron/baryon_operator_aggregate_w.h,
	  lib/meas/hadron/derivmesonseqsrc_w.cc,
	  lib/meas/hadron/derivmesonseqsrc_w.h,
	  lib/meas/hadron/group_baryon_operator_w.cc,
	  lib/meas/hadron/group_baryon_operator_w.h,
	  lib/meas/hadron/mesonseqsrc_w.cc,
	  lib/meas/hadron/mesonseqsrc_w.h,
	  lib/meas/hadron/no_spin_insertion.cc,
	  lib/meas/hadron/no_spin_insertion.h,
	  lib/meas/hadron/photon_seqsrc_w.cc,
	  lib/meas/hadron/photon_seqsrc_w.h,
	  lib/meas/hadron/seqsource_aggregate_w.cc,
	  lib/meas/hadron/seqsource_aggregate_w.h,
	  lib/meas/hadron/simple_baryon_operator_w.cc,
	  lib/meas/hadron/simple_baryon_operator_w.h,
	  lib/meas/hadron/simple_spin_insertion_w.cc,
	  lib/meas/hadron/simple_spin_insertion_w.h,
	  lib/meas/hadron/spin_insertion_aggregate.cc,
	  lib/meas/hadron/spin_insertion_aggregate.h,
	  lib/meas/inline/inline_aggregate.cc,
	  lib/meas/inline/inline_aggregate.h,
	  lib/meas/inline/eig/inline_eig_aggregate.cc,
	  lib/meas/inline/eig/inline_eig_aggregate.h,
	  lib/meas/inline/eig/inline_eigbnds.cc,
	  lib/meas/inline/eig/inline_eigbnds.h,
	  lib/meas/inline/eig/inline_ritz_H_w.cc,
	  lib/meas/inline/eig/inline_ritz_H_w.h,
	  lib/meas/inline/gfix/inline_coulgauge.cc,
	  lib/meas/inline/gfix/inline_coulgauge.h,
	  lib/meas/inline/gfix/inline_gfix_aggregate.cc,
	  lib/meas/inline/gfix/inline_gfix_aggregate.h,
	  lib/meas/inline/glue/inline_fuzwilp.cc,
	  lib/meas/inline/glue/inline_fuzwilp.h,
	  lib/meas/inline/glue/inline_glue_aggregate.cc,
	  lib/meas/inline/glue/inline_glue_aggregate.h,
	  lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_plaquette.h,
	  lib/meas/inline/glue/inline_polylp.cc,
	  lib/meas/inline/glue/inline_polylp.h,
	  lib/meas/inline/glue/inline_wilslp.cc,
	  lib/meas/inline/glue/inline_wilslp.h,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.cc,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.h,
	  lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_hadron_aggregate.h,
	  lib/meas/inline/hadron/inline_hadspec_w.cc,
	  lib/meas/inline/hadron/inline_hadspec_w.h,
	  lib/meas/inline/hadron/inline_make_source_ferm_w.cc,
	  lib/meas/inline/hadron/inline_make_source_ferm_w.h,
	  lib/meas/inline/hadron/inline_make_source_w.cc,
	  lib/meas/inline/hadron/inline_make_source_w.h,
	  lib/meas/inline/hadron/inline_mesonspec_w.cc,
	  lib/meas/inline/hadron/inline_mesonspec_w.h,
	  lib/meas/inline/hadron/inline_mres_w.cc,
	  lib/meas/inline/hadron/inline_mres_w.h,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.h,
	  lib/meas/inline/hadron/inline_multipole_w.cc,
	  lib/meas/inline/hadron/inline_multipole_w.h,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.h,
	  lib/meas/inline/hadron/inline_polar_source_w.cc,
	  lib/meas/inline/hadron/inline_propagator_ferm_w.cc,
	  lib/meas/inline/hadron/inline_propagator_ferm_w.h,
	  lib/meas/inline/hadron/inline_propagator_w.cc,
	  lib/meas/inline/hadron/inline_propagator_w.h,
	  lib/meas/inline/hadron/inline_qpropadd_w.cc,
	  lib/meas/inline/hadron/inline_qpropadd_w.h,
	  lib/meas/inline/hadron/inline_qpropqio_w.cc,
	  lib/meas/inline/hadron/inline_qpropqio_w.h,
	  lib/meas/inline/hadron/inline_qqbar_w.cc,
	  lib/meas/inline/hadron/inline_qqbar_w.h,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.cc,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.h,
	  lib/meas/inline/hadron/inline_qqq_w.cc,
	  lib/meas/inline/hadron/inline_qqq_w.h,
	  lib/meas/inline/hadron/inline_seqsource_w.cc,
	  lib/meas/inline/hadron/inline_seqsource_w.h,
	  lib/meas/inline/hadron/inline_sink_smear_w.cc,
	  lib/meas/inline/hadron/inline_sink_smear_w.h,
	  lib/meas/inline/hadron/inline_spectrumOct_w.cc,
	  lib/meas/inline/hadron/inline_spectrumOct_w.h,
	  lib/meas/inline/hadron/inline_spectrumQll.cc,
	  lib/meas/inline/hadron/inline_spectrumQll.h,
	  lib/meas/inline/hadron/inline_spectrum_w.cc,
	  lib/meas/inline/hadron/inline_spectrum_w.h,
	  lib/meas/inline/hadron/inline_stoch_baryon_w.cc,
	  lib/meas/inline/hadron/inline_stoch_baryon_w.h,
	  lib/meas/inline/hadron/inline_stoch_meson_w.cc,
	  lib/meas/inline/hadron/inline_stoch_meson_w.h,
	  lib/meas/inline/hadron_s/inline_hadron_aggregate_s.cc,
	  lib/meas/inline/hadron_s/inline_hadron_aggregate_s.h,
	  lib/meas/inline/hadron_s/inline_spectrum_s.cc,
	  lib/meas/inline/hadron_s/inline_spectrum_s.h,
	  lib/meas/inline/io/inline_erase_obj.cc,
	  lib/meas/inline/io/inline_erase_obj.h,
	  lib/meas/inline/io/inline_gaussian_obj.cc,
	  lib/meas/inline/io/inline_gaussian_obj.h,
	  lib/meas/inline/io/inline_io_aggregate.cc,
	  lib/meas/inline/io/inline_io_aggregate.h,
	  lib/meas/inline/io/inline_list_obj.cc,
	  lib/meas/inline/io/inline_list_obj.h,
	  lib/meas/inline/io/inline_nersc_read_obj.cc,
	  lib/meas/inline/io/inline_nersc_read_obj.h,
	  lib/meas/inline/io/inline_nersc_write_obj.cc,
	  lib/meas/inline/io/inline_nersc_write_obj.h,
	  lib/meas/inline/io/inline_qio_read_obj.cc,
	  lib/meas/inline/io/inline_qio_read_obj.h,
	  lib/meas/inline/io/inline_qio_write_erase_obj.cc,
	  lib/meas/inline/io/inline_qio_write_erase_obj.h,
	  lib/meas/inline/io/inline_qio_write_obj.cc,
	  lib/meas/inline/io/inline_qio_write_obj.h,
	  lib/meas/inline/io/inline_szin_read_obj.cc,
	  lib/meas/inline/io/inline_szin_read_obj.h,
	  lib/meas/inline/io/inline_szin_write_obj.cc,
	  lib/meas/inline/io/inline_szin_write_obj.h,
	  lib/meas/inline/io/inline_xml_write_obj.cc,
	  lib/meas/inline/io/inline_xml_write_obj.h,
	  lib/meas/inline/io/qio_read_obj_funcmap.cc,
	  lib/meas/inline/io/qio_read_obj_funcmap.h,
	  lib/meas/inline/io/qio_write_obj_funcmap.cc,
	  lib/meas/inline/io/qio_write_obj_funcmap.h,
	  lib/meas/inline/io/szin_read_obj_funcmap.cc,
	  lib/meas/inline/io/szin_read_obj_funcmap.h,
	  lib/meas/inline/io/szin_write_obj_funcmap.cc,
	  lib/meas/inline/io/szin_write_obj_funcmap.h,
	  lib/meas/inline/io/xml_write_obj_funcmap.cc,
	  lib/meas/inline/io/xml_write_obj_funcmap.h,
	  lib/meas/inline/schrfun/inline_schrfun_aggregate.cc,
	  lib/meas/inline/schrfun/inline_schrfun_aggregate.h,
	  lib/meas/inline/schrfun/inline_sfpcac_w.cc,
	  lib/meas/inline/schrfun/inline_sfpcac_w.h,
	  lib/meas/inline/smear/inline_link_smear.cc,
	  lib/meas/inline/smear/inline_link_smear.h,
	  lib/meas/inline/smear/inline_smear_aggregate.cc,
	  lib/meas/inline/smear/inline_smear_aggregate.h,
	  lib/meas/sinks/pt_sink_smearing.cc,
	  lib/meas/sinks/pt_sink_smearing.h,
	  lib/meas/sinks/sh_sink_smearing.cc,
	  lib/meas/sinks/sh_sink_smearing.h,
	  lib/meas/sinks/sink_smearing_aggregate.cc,
	  lib/meas/sinks/sink_smearing_aggregate.h,
	  lib/meas/smear/ape_link_smearing.cc,
	  lib/meas/smear/ape_link_smearing.h,
	  lib/meas/smear/deriv_quark_displacement_w.cc,
	  lib/meas/smear/deriv_quark_displacement_w.h,
	  lib/meas/smear/gamma_displacement_w.cc,
	  lib/meas/smear/gamma_displacement_w.h,
	  lib/meas/smear/gaus_quark_smearing.cc,
	  lib/meas/smear/gaus_quark_smearing.h,
	  lib/meas/smear/hyp_link_smearing.cc,
	  lib/meas/smear/hyp_link_smearing.h,
	  lib/meas/smear/link_smearing_aggregate.cc,
	  lib/meas/smear/link_smearing_aggregate.h,
	  lib/meas/smear/no_link_smearing.cc,
	  lib/meas/smear/no_link_smearing.h,
	  lib/meas/smear/no_quark_displacement.cc,
	  lib/meas/smear/no_quark_displacement.h,
	  lib/meas/smear/no_quark_smearing.cc,
	  lib/meas/smear/no_quark_smearing.h,
	  lib/meas/smear/quark_displacement_aggregate.cc,
	  lib/meas/smear/quark_displacement_aggregate.h,
	  lib/meas/smear/quark_smearing_aggregate.cc,
	  lib/meas/smear/quark_smearing_aggregate.h,
	  lib/meas/smear/simple_quark_displacement.cc,
	  lib/meas/smear/simple_quark_displacement.h,
	  lib/meas/smear/stout_link_smearing.cc,
	  lib/meas/smear/stout_link_smearing.h,
	  lib/meas/sources/dilutezN_source_const.cc,
	  lib/meas/sources/dilutezN_source_const.h,
	  lib/meas/sources/partwall_source_const.cc,
	  lib/meas/sources/partwall_source_const.h,
	  lib/meas/sources/pt_source_const.cc,
	  lib/meas/sources/pt_source_const.h,
	  lib/meas/sources/pt_source_smearing.cc,
	  lib/meas/sources/pt_source_smearing.h,
	  lib/meas/sources/rndz2wall_source_const.cc,
	  lib/meas/sources/rndz2wall_source_const.h,
	  lib/meas/sources/sh_source_const.cc,
	  lib/meas/sources/sh_source_const.h,
	  lib/meas/sources/sh_source_smearing.cc,
	  lib/meas/sources/sh_source_smearing.h,
	  lib/meas/sources/source_const_aggregate.cc,
	  lib/meas/sources/source_const_aggregate.h,
	  lib/meas/sources/source_smearing_aggregate.cc,
	  lib/meas/sources/source_smearing_aggregate.h,
	  lib/meas/sources/wall_source_const.cc,
	  lib/meas/sources/wall_source_const.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/integrator_aggregate.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.h,
	  lib/update/molecdyn/monomial/fixed_random_ferm_monomial.cc,
	  lib/update/molecdyn/monomial/fixed_random_ferm_monomial.h,
	  lib/update/molecdyn/monomial/gauge_monomial.cc,
	  lib/update/molecdyn/monomial/gauge_monomial.h,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.cc,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h,
	  lib/update/molecdyn/predictor/last_solution_predictor.cc,
	  lib/update/molecdyn/predictor/last_solution_predictor.h,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.h,
	  lib/update/molecdyn/predictor/lu_solve.cc,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.h,
	  lib/update/molecdyn/predictor/predictor_aggregate.cc,
	  lib/update/molecdyn/predictor/predictor_aggregate.h,
	  lib/update/molecdyn/predictor/zero_guess_predictor.cc,
	  lib/update/molecdyn/predictor/zero_guess_predictor.h,
	  mainprogs/main/chroma.cc, mainprogs/main/hmc.cc,
	  mainprogs/main/purgaug.cc, mainprogs/tests/t_dwf4d.cc,
	  mainprogs/tests/t_hamiltonian.cc, mainprogs/tests/t_leapfrog.cc,
	  mainprogs/tests/t_mres_4d.cc,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_precact_4d.cc, mainprogs/tests/t_precact_5d.cc,
	  mainprogs/tests/t_ritz_KS.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc: Major
	  housecleaning. Changed all the uses of the registration method to
	  now be **runtime**. The "registerAll()" function is exposed that
	  will register the thingy. There is a private "registered" flag
	  that is initially false and then set to true upon registration
	  done at runtime.

2006-09-19 15:10  tag chroma3-14-5

2006-09-19 15:10  edwards

	* tests/chroma/glue/wilslp/wilslp.ini.xml: Fixed comment.

2006-09-19 14:46  edwards

	* aclocal.m4, configure: Induced changes

2006-09-19 14:46  edwards

	* configure.ac: Changed to 3.14.5

2006-09-19 14:45  edwards

	* NEWS: Info on 3.14.5

2006-09-19 14:38  edwards

	* lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc,
	  fixed_random_ferm_monomial.h: Fixed path to fermstates.

2006-09-19 14:34  edwards

	* lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc,
	  fixed_random_ferm_monomial.h: Lots of changes, but mostly a house
	  cleaning. Moved all gauge states and ferm states to a new
	  gaugestates and fermstates directory. Lots of path changes.

2006-09-19 14:30  edwards

	* lib/meas/inline/glue/inline_wilslp.cc: Lots of changes, but
	  mostly a house cleaning. Moved all gauge states and ferm states
	  to a new  gaugestates and fermstates directory. Lots of path
	  changes.

2006-09-19 14:25  edwards

	* lib/actions/gauge/gaugeacts/: aniso_spectrum_gaugeact.cc,
	  lw_1loop_gaugeact.cc, lw_tree_gaugeact.cc, pg_gaugeact.cc,
	  plaq_gaugeact.cc, plaq_plus_spatial_two_plaq_gaugeact.cc,
	  rbc_gaugeact.cc, rect_gaugeact.cc, rg_gaugeact.cc,
	  spatial_two_plaq_gaugeact.cc, wilson_gaugeact.cc: Lots of
	  changes, but mostly a house cleaning. Moved all gauge states and
	  ferm states to a new	gaugestates and fermstates directory. Lots
	  of path changes.

2006-09-19 14:21  edwards

	* lib/actions/gauge/gaugestates/: gauge_createstate_aggregate.cc,
	  gauge_createstate_aggregate.h, gauge_createstate_factory.h,
	  gaugestates.h, periodic_gaugestate.cc, periodic_gaugestate.h,
	  simple_gaugestate.cc, simple_gaugestate.h, stout_gaugestate.cc,
	  stout_gaugestate.h: Lots of changes, but mostly a house cleaning.
	  Moved all gauge states and ferm states to a new  gaugestates and
	  fermstates directory. Lots of path changes.

2006-09-19 14:08  edwards

	* lib/actions/ferm/fermacts/: asqtad_fermact_s.cc,
	  poly_cheb_fermact_w.cc, prec_clover_fermact_w.cc,
	  prec_dwf_fermact_array_w.cc,
	  prec_ht_contfrac5d_fermact_array_w.cc,
	  prec_kno_fermact_array_w.cc, prec_nef_fermact_array_w.cc,
	  prec_ovdwf_fermact_array_w.cc, prec_ovext_fermact_array_w.cc,
	  prec_ovlap_contfrac5d_fermact_array_w.cc,
	  prec_parwilson_fermact_w.cc, prec_wilson_fermact_w.cc,
	  prec_zolo_nef_fermact_array_w.cc, unprec_clover_fermact_w.cc,
	  unprec_dwf_fermact_array_w.cc, unprec_dwftransf_fermact_w.cc,
	  unprec_hamberwu_fermact_w.cc,
	  unprec_ht_contfrac5d_fermact_array_w.cc,
	  unprec_nef_fermact_array_w.cc, unprec_ovdwf_fermact_array_w.cc,
	  unprec_ovext_fermact_array_w.cc,
	  unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  unprec_parwilson_fermact_w.cc, unprec_w12_fermact_w.cc,
	  unprec_wilson_fermact_w.cc, unprec_zolo_nef_fermact_array_w.cc:
	  Fixed path to ferm_createstate_reader.

2006-09-19 14:00  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.out.xml,
	  purgaug.sfnonpt.ini.xml, purgaug.sfnonpt.out.xml: Updated tests.

2006-09-19 13:53  edwards

	* lib/actions/ferm/fermstates/: asqtad_state.h, eigen_state.h,
	  extfield.h, extfield_aggregate_w.cc, extfield_aggregate_w.h,
	  extfield_factory_w.h, extfield_fermstate_w.cc,
	  extfield_fermstate_w.h, ferm_createstate_aggregate_s.cc,
	  ferm_createstate_aggregate_s.h, ferm_createstate_aggregate_w.cc,
	  ferm_createstate_aggregate_w.h, ferm_createstate_factory_s.h,
	  ferm_createstate_factory_w.h, ferm_createstate_reader_s.cc,
	  ferm_createstate_reader_s.h, ferm_createstate_reader_w.cc,
	  ferm_createstate_reader_w.h, fermstates.h, overlap_state.cc,
	  overlap_state.h, periodic_fermstate.h, periodic_fermstate_s.cc,
	  periodic_fermstate_s.h, periodic_fermstate_w.cc,
	  periodic_fermstate_w.h, simple_fermstate.h,
	  simple_fermstate_s.cc, simple_fermstate_s.h,
	  simple_fermstate_w.cc, simple_fermstate_w.h,
	  stout_fermstate_params.cc, stout_fermstate_params.h,
	  stout_fermstate_w.cc, stout_fermstate_w.h: Lots of changes, but
	  mostly a house cleaning. Moved all gauge states and ferm states
	  to a new  gaugestates and fermstates directory. Lots of path
	  changes.

2006-09-19 12:15  edwards

	* tests/chroma/glue/wilslp/wilslp.out.xml: Fixed a comment.

2006-09-19 12:05  edwards

	* lib/actions/ferm/fermacts/: prec_clover_extfield_fermact_w.cc,
	  prec_clover_extfield_fermact_w.h: Added back in. Accidentally
	  removed.

2006-09-19 12:04  edwards

	* lib/Makefile.am, lib/actions/ferm/ferm.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/eigen_state.h,
	  lib/actions/ferm/fermacts/extfield.h,
	  lib/actions/ferm/fermacts/extfield_aggregate_w.cc,
	  lib/actions/ferm/fermacts/extfield_aggregate_w.h,
	  lib/actions/ferm/fermacts/extfield_factory_w.h,
	  lib/actions/ferm/fermacts/extfield_fermstate_w.cc,
	  lib/actions/ferm/fermacts/extfield_fermstate_w.h,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_s.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_s.h,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.h,
	  lib/actions/ferm/fermacts/ferm_createstate_factory_s.h,
	  lib/actions/ferm/fermacts/ferm_createstate_factory_w.h,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_s.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_s.h,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_w.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_w.h,
	  lib/actions/ferm/fermacts/fermacts.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_s.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_state.cc,
	  lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/periodic_fermstate.h,
	  lib/actions/ferm/fermacts/periodic_fermstate_s.cc,
	  lib/actions/ferm/fermacts/periodic_fermstate_s.h,
	  lib/actions/ferm/fermacts/periodic_fermstate_w.cc,
	  lib/actions/ferm/fermacts/periodic_fermstate_w.h,
	  lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_extfield_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_slic_fermact_w.cc,
	  lib/actions/ferm/fermacts/simple_fermstate.h,
	  lib/actions/ferm/fermacts/simple_fermstate_s.cc,
	  lib/actions/ferm/fermacts/simple_fermstate_s.h,
	  lib/actions/ferm/fermacts/simple_fermstate_w.cc,
	  lib/actions/ferm/fermacts/simple_fermstate_w.h,
	  lib/actions/ferm/fermacts/stout_fermact_params.cc,
	  lib/actions/ferm/fermacts/stout_fermact_params.h,
	  lib/actions/ferm/fermacts/stout_fermstate_params.cc,
	  lib/actions/ferm/fermacts/stout_fermstate_params.h,
	  lib/actions/ferm/fermacts/stout_fermstate_w.cc,
	  lib/actions/ferm/fermacts/stout_fermstate_w.h,
	  lib/actions/ferm/fermacts/stout_state.cc,
	  lib/actions/ferm/fermacts/stout_state.h,
	  lib/actions/ferm/fermacts/stout_utils.cc,
	  lib/actions/ferm/fermacts/stout_utils.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/prec_clover_extfield_linop_w.cc,
	  lib/actions/ferm/linop/prec_slic_linop_w.h,
	  lib/actions/gauge/gauge.h,
	  lib/actions/gauge/gaugeacts/gauge_createstate_aggregate.cc,
	  lib/actions/gauge/gaugeacts/gauge_createstate_aggregate.h,
	  lib/actions/gauge/gaugeacts/gauge_createstate_factory.h,
	  lib/actions/gauge/gaugeacts/gaugeacts.h,
	  lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc,
	  lib/actions/gauge/gaugeacts/simple_gaugestate.cc,
	  lib/actions/gauge/gaugeacts/simple_gaugestate.h,
	  lib/actions/gauge/gaugeacts/stout_gaugestate.cc,
	  lib/actions/gauge/gaugeacts/stout_gaugestate.h,
	  lib/util/gauge/stout_utils.cc, lib/util/gauge/stout_utils.h,
	  mainprogs/tests/t_aniso_gaugeact.cc,
	  mainprogs/tests/t_stout_state.cc: Lots of changes, but mostly a
	  house cleaning. Moved all gauge states and ferm states to a new
	  gaugestates and fermstates directory. Lots of path changes.

2006-09-19 12:02  edwards

	* lib/meas/inline/glue/: inline_wilslp.cc, inline_wilslp.h: Now
	  have an optional gaugestate reader.

2006-09-19 12:01  edwards

	* tests/chroma/glue/wilslp/: wilslp.ini.xml, wilslp.out.xml: New
	  form of gaugestate input.

2006-09-19 09:54  tag chroma3-14-4

2006-09-19 09:54  bjoo

	* configure, configure.ac: Simplified flags. Bumped up version tag
	  in configure.ac

2006-09-19 09:18  bjoo

	* configure, configure.ac, other_libs/cg-dwf/configure,
	  other_libs/cg-dwf/configure.ac: Simplified the flags for
	  --enable-cg-dwf

2006-09-18 21:50  edwards

	* lib/actions/gauge/gaugebcs/periodic_gaugebc.h: Added emacs
	  control.

2006-09-18 17:04  tag chroma3-14-3

2006-09-18 17:04  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/actions/ferm/qprop/avp_altivecf_solver.cc,
	  lib/actions/ferm/qprop/avp_altivecf_solver.h,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Should
	  now be able to use CG-DWF for bluelight (in the presence of AVPs
	  compiler) and AltiVec

2006-09-18 16:28  bjoo

	* lib/actions/ferm/qprop/: avp_bgld_solver.cc, avp_bgld_solver.h,
	  avp_bglf_solver.cc, avp_bglf_solver.h: Initial conversions for
	  BlueGene

2006-09-18 16:11  bjoo

	* other_libs/cg-dwf/: aclocal.m4, cg-dwf-config-internal.h.in,
	  configure: Induced changes

2006-09-18 16:11  bjoo

	* other_libs/cg-dwf/: cg-dwf-config.h, configure.ac: Now define
	  architecture flag in cg-dwf-config.h

2006-09-18 15:53  tag chroma3-14-2

2006-09-18 15:53  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.h,
	  avp_sse_solver.h: min_iter = 0 now works in v1.3.3

2006-09-18 15:45  tag chroma3-14-1

2006-09-18 15:45  bjoo

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Single
	  Double Prec now works

2006-09-18 15:30  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.h,
	  avp_ssed_solver.cc, avp_ssed_solver.h, avp_ssef_solver.cc,
	  avp_ssef_solver.h, prec_dwf_qprop_array_cg_dwf_w.h: patched for
	  version 1.3.3 reverted to previous model of init and fini

2006-09-18 15:08  bjoo

	* other_libs/cg-dwf/: aclocal.m4, configure, configure.ac, dwf.c,
	  dwf.nw: v 1.3.3 patch test

2006-09-18 14:23  tag chroma3-14-0

2006-09-18 14:23  bjoo

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h,
	  tests/chroma/hadron/propagator/prec_dwf.out.xml: Fixed n_count
	  output

2006-09-18 14:12  bjoo

	* tests/chroma/hadron/propagator/: prec_dwf.ini.xml,
	  prec_dwf.out.xml: New regres for prec_dwf.ini.xml - retries set
	  to 1 and so the output structure has changed

2006-09-18 13:29  bjoo

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_cg_dwf_w.h: Removed
	  unwanted ifdef

2006-09-18 10:17  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.h,
	  avp_ssed_solver.cc, avp_ssed_solver.h, avp_ssef_solver.cc,
	  avp_ssef_solver.h, prec_dwf_qprop_array_cg_dwf_w.h: DWF Prop
	  Phase B Done

2006-09-16 12:55  edwards

	* lib/meas/hadron/: group_baryon_operator_w.cc,
	  group_baryon_operator_w.h: Jimmy Juge's new version of these
	  routines do not compile. I'm reinserting the previous version in
	  front of these to at least let them compile and pass the
	  regression tests.

2006-09-16 12:33  edwards

	* lib/actions/ferm/qprop/: avp_ssed_solver.cc~, avp_ssed_solver.h~,
	  avp_ssef_solver.cc~, avp_ssef_solver.h~: Inadvertantly added.

2006-09-16 01:20  juge

	* lib/meas/hadron/group_baryon_operator_w.cc: This is the code
	  which goes with the comments of group_baryon_operator_w.h

2006-09-16 01:18  juge

	* lib/meas/hadron/group_baryon_operator_w.h: Checking in the change
	  in the approach of the all-to-all code.  The code is not written
	  yet, but the new approach is outlined and basic skeleton is
	  described. A perl script which generates the input file is also
	  given at the very end. This final approach where the baryon
	  operators are built-up from QQQ building blocks which are never
	  recomputed should be the final change in the "philosophy" of the
	  program. One final reduction may be to avoid having an array of
	  the QQQ class and just run through them one at a time.  This code
	  is still being worked on but is being checked in because I can no
	  longer come up with ways to make it more efficient and so the
	  approach should not change anymore.

2006-09-16 01:01  tag help

2006-09-16 01:01  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.h,
	  dwf_qpropt_w.h, prec_dwf_qprop_array_cg_dwf_w.h: More arsing
	  about

2006-09-15 23:25  bjoo

	* lib/Makefile.am: MAkefiles

2006-09-15 23:24  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.h,
	  avp_sse_solver.h, avp_ssed_solver.cc, avp_ssed_solver.cc~,
	  avp_ssed_solver.h, avp_ssed_solver.h~, avp_ssef_solver.cc,
	  avp_ssef_solver.cc~, avp_ssef_solver.h, avp_ssef_solver.h~,
	  dwf_qpropt_w.h, prec_dwf_qprop_array_cg_dwf_w.h: Code Factor

2006-09-15 15:22  bjoo

	* lib/actions/ferm/qprop/: avp_inverter_interface.cc,
	  avp_inverter_interface.h, avp_sse_solver.h, dwf_qpropt_w.h,
	  prec_dwf_qprop_array_cg_dwf_w.h,
	  prec_dwf_qprop_array_cg_dwf_w.cc: Newer structure

2006-09-15 15:21  bjoo

	* lib/Makefile.am: New Makefile.am

2006-09-15 11:28  edwards

	* scripts/run_chroma_xmldiff.pl: Changed to now support either a
	  "log" or and "output" entry.

2006-09-15 11:27  edwards

	* tests/t_leapfrog/: regres.pl, t_leapfrog.aniso_spectrum.log.xml,
	  t_leapfrog.aniso_spectrum.out.xml,
	  t_leapfrog.fixed_X_action_stout.log.xml,
	  t_leapfrog.fixed_X_action_stout.out.xml,
	  t_leapfrog.lw.sfnonpt.log.xml, t_leapfrog.lw.sfnonpt.out.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.log.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.log.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.out.xml,
	  t_leapfrog.prec_1flav_dwf.log.xml,
	  t_leapfrog.prec_1flav_dwf.out.xml,
	  t_leapfrog.prec_1flav_wilson.log.xml,
	  t_leapfrog.prec_1flav_wilson.out.xml,
	  t_leapfrog.prec_2flav_clover.log.xml,
	  t_leapfrog.prec_2flav_clover.out.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.log.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.out.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.log.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.out.xml,
	  t_leapfrog.prec_clover_stout.log.xml,
	  t_leapfrog.prec_clover_stout.out.xml,
	  t_leapfrog.prec_contfrac.log.xml,
	  t_leapfrog.prec_contfrac.out.xml, t_leapfrog.prec_dwf.log.xml,
	  t_leapfrog.prec_dwf.out.xml,
	  t_leapfrog.prec_hasenbusch_wilson.log.xml,
	  t_leapfrog.prec_hasenbusch_wilson.out.xml,
	  t_leapfrog.prec_parwilson.log.xml,
	  t_leapfrog.prec_parwilson.out.xml,
	  t_leapfrog.prec_wilson.log.xml, t_leapfrog.prec_wilson.out.xml,
	  t_leapfrog.rect_gaugeact.log.xml,
	  t_leapfrog.rect_gaugeact.out.xml,
	  t_leapfrog.rect_gaugeact_1.log.xml,
	  t_leapfrog.rect_gaugeact_1.out.xml,
	  t_leapfrog.rect_gaugeact_aniso.log.xml,
	  t_leapfrog.rect_gaugeact_aniso.out.xml,
	  t_leapfrog.rect_gaugeact_c1t0.log.xml,
	  t_leapfrog.rect_gaugeact_c1t0.out.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.log.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.out.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.log.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.out.xml,
	  t_leapfrog.unprec_clover.log.xml,
	  t_leapfrog.unprec_clover.out.xml, t_leapfrog.unprec_dwf.log.xml,
	  t_leapfrog.unprec_dwf.out.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.log.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.out.xml,
	  t_leapfrog.unprec_wilson.log.xml,
	  t_leapfrog.unprec_wilson.out.xml: Changed out.xml files to
	  log.xml files. The regression file is now updated to use a "log"
	  entry saying to do the tests of that xml output.

2006-09-15 11:06  edwards

	* mainprogs/tests/: t_hamiltonian.cc, t_hmc_pg.cc, t_leapfrog.cc:
	  Split output to also have log file.

2006-09-15 09:47  bjoo

	* other_libs/cg-dwf/: aclocal.m4, configure, configure.ac: Changed
	  configure script to look first for bgl-gcc for bluelight builds

2006-09-15 09:16  bjoo

	* other_libs/cg-dwf/: Makefile.original, algorithm2e.sty,
	  configure.ac, dwf-altivecf.c, dwf-bluelightd.c, dwf-bluelightf.c,
	  dwf-ssed.c, dwf-ssef.c, dwf-tables.h, dwf.c, dwf.nw, dwf.pdf,
	  interface.pdf, config/altivecf-debug.conf,
	  config/bluelightd-debug.conf, config/bluelightd.conf,
	  config/bluelightf.conf, tests/qdpc/Makefile, tests/qdpc/README,
	  tests/qdpc/cg-solver.c, tests/qdpc/cg-solver1.c,
	  tests/qdpc/dwf-dd.c, tests/qdpc/dwf-dd1.c, tests/qdpc/dwf-op.c,
	  tests/qdpc/dwf-op1.c, tests/qdpc/dwf-opx.c,
	  tests/qdpc/dwf-opx1.c, tests/qdpc/dwf1-run,
	  tests/qdpc/dwf1-run-s, tests/qdpc/fermions.c,
	  tests/qdpc/test-case-args, tests/ssef/Makefile,
	  tests/ssef/README, tests/ssef/bl.c, tests/ssef/main.c,
	  tests/xqmp/Makefile, tests/xqmp/qmp.c, aclocal.m4, configure:
	  First attempt at merging 1.3.2 changes

2006-09-14 22:59  tag chroma3-13-0

2006-09-14 22:59  edwards

	* NEWS: Info on 3.13.0

2006-09-14 22:53  edwards

	* tests/hmc/: hmc.prec_parwilson.ini.xml,
	  iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: Removed.

2006-09-14 22:53  edwards

	* tests/hmc/: hmc.prec_wilson.ini.xml, hmc.prec_wilson.out.xml:
	  Changed number of updates. Now, split output to XMLLOG and
	  XMLDAT.

2006-09-14 22:51  edwards

	* mainprogs/main/hmc.cc: Split output to go XMLLOG and XMLDAT.

2006-09-14 22:50  edwards

	* lib/update/molecdyn/: hamiltonian/abs_hamiltonian.h,
	  hamiltonian/exact_hamiltonian.h, hmc/abs_hmc.h,
	  integrator/abs_integrator.h, integrator/lcm_integrator_leaps.cc,
	  integrator/lcm_minimum_norm2_integrator_mts.cc,
	  integrator/lcm_minimum_norm2_qpq_integrator_mts.cc,
	  integrator/lcm_pqp_leapfrog_mts.cc,
	  integrator/lcm_sexton_weingarten.cc,
	  monomial/fixed_random_ferm_monomial.cc,
	  monomial/gauge_monomial.h,
	  monomial/one_flavor_rat_monomial5d_w.h,
	  monomial/one_flavor_rat_monomial_w.h,
	  monomial/prec_logdet_ee_monomial_w.h,
	  monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  monomial/two_flavor_hasenbusch_monomial_w.h,
	  monomial/two_flavor_monomial5d_w.h,
	  monomial/two_flavor_monomial_w.h,
	  monomial/two_flavor_polynomial_monomial_w.h,
	  monomial/two_flavor_polyprec_monomial_w.h: Changed output to go
	  to XMLLOG.

2006-09-14 22:48  edwards

	* lib/io/xmllog_io.h: Changed singleton to disambiguate.

2006-09-14 22:46  edwards

	* lib/singleton.h: Added DefaultLifetime{1,2} to help with
	  disambiguation.

2006-09-14 22:44  edwards

	* configure: Induced changes

2006-09-14 22:41  edwards

	* aclocal.m4: Induced changes

2006-09-14 22:39  edwards

	* configure.ac: Changed to 3.13.0

2006-09-14 21:43  edwards

	* tests/hmc/: dbw2_bp764_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  hmc.prec_1flav_dwf.xml.ini, hmc.prec_1flav_stout_dwf.xml.ini,
	  hmc.prec_1flav_wilson.xml.ini, hmc.prec_3flav_dwf.xml.ini,
	  hmc.prec_contfrac.xml.ini, hmc.prec_dwf.xml.ini,
	  hmc.prec_mixed_wilson.xml.ini, hmc.prec_parwilson.xml.ini,
	  hmc.prec_stout_dwf.xml.ini, hmc.prec_stout_wilson.xml.ini,
	  hmc.prec_wilson.xml.ini, hmc.unprec_stout_dwf.xml.ini,
	  hmc.unprec_stout_wilson.xml.ini, hmctest.in.xml,
	  iw_b2p2_16_32_cfz_Nf3_m0p024_ls6.xml.ini,
	  iw_b2p2_16_32_cfz_Nf3_m0p024_ls6_bjoo.xml.ini,
	  iw_b2p2_8_16_cfz_Nf3_m0p03_ls8_dt0p005.ini.xml,
	  iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Removed obsolete input files.

2006-09-14 10:48  edwards

	* other_libs/cg-dwf/: dwf-ssed.c, dwf.nw: Changed double prec
	  vector types to new intel intrinsics.

2006-09-14 10:46  bjoo

	* other_libs/cg-dwf/dwf-ssed.c: dwf-ssed.c -> m128d

2006-09-14 10:06  edwards

	* other_libs/cg-dwf/: dwf-ssef.c, dwf.nw: Changes to support new
	  style vector intrinsics required by gcc4.

2006-09-14 10:05  edwards

	* other_libs/cg-dwf/Makefile.original: Added directory to find
	  noweb stuff

2006-09-13 22:55  edwards

	* lib/io/qprop_io.cc: Added check of FermState/FermionBC/boundary.

2006-09-13 15:11  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: Integrated AVPs double precision
	  stuff

2006-09-13 15:06  bjoo

	* lib/actions/ferm/qprop/: dwf_qpropt_w.h,
	  prec_dwf_qprop_array_cg_dwf_w.cc,
	  prec_dwf_qprop_array_cg_dwf_w.h: Integration of newst DWF
	  inverter

2006-09-13 14:14  bjoo

	* other_libs/: Makefile.am, cg-dwf/Makefile.am, cg-dwf/configure:
	  Added cg-dwf

2006-09-13 14:10  bjoo

	* other_libs/cg-dwf/autoconfdir/: config.guess, config.sub: Added
	  extra files

2006-09-13 14:09  bjoo

	* other_libs/cg-dwf/: aclocal.m4, cg-dwf-config-internal.h.in,
	  cg-dwf-config.h, configure.ac: Added .h files to hide autoconf
	  macros in

2006-09-13 13:39  bjoo

	* other_libs/cg-dwf/tests/: qdpc/.gdb_history, xqmp/.gdb_history:
	  Removed .gdb_history files

2006-09-13 13:36  bjoo

	* other_libs/cg-dwf/: AUTHORS, COPYING, INSTALL, Makefile.am,
	  Makefile.original, NEWS, README, acinclude.m4, aclocal.m4,
	  algorithm2e.sty, cg-dwf-config.in, configure, configure.ac,
	  dwf-altivecf.c, dwf-altivecf.h, dwf-bluelightd.c,
	  dwf-bluelightd.h, dwf-bluelightf.c, dwf-bluelightf.h, dwf-ssed.c,
	  dwf-ssed.h, dwf-ssef.c, dwf-ssef.h, dwf-tables.h, dwf.c, dwf.nw,
	  dwf.pdf, interface.nw, interface.pdf, autoconfdir/depcomp,
	  autoconfdir/install-sh, autoconfdir/missing,
	  config/altivecf.conf, config/bluelightd.conf, config/default,
	  config/ssed.conf, config/ssef.conf, tests/bluelight/Makefile,
	  tests/bluelight/README, tests/bluelight/bl.c,
	  tests/bluelight/main.c, tests/qdpc/.DS_Store,
	  tests/qdpc/8-3-16-2-1-altivecf-single,
	  tests/qdpc/8-3-16-2-altivecf-single, tests/qdpc/Makefile,
	  tests/qdpc/cg-solver.c, tests/qdpc/dwf-op.c, tests/qdpc/dwf-run,
	  tests/qdpc/dwf-run-s, tests/qdpc/op-altivecf.res,
	  tests/qdpc/results, tests/qdpc/run-me, tests/xqmp/.gdb_history,
	  tests/xqmp/Makefile, tests/xqmp/README, tests/xqmp/qmp-check.c,
	  tests/xqmp/qmp.c, tests/qdpc/.gdb_history,
	  tests/qdpc/8-3-16-2-1-ssed-single,
	  tests/qdpc/8-3-16-2-1-ssef-single,
	  tests/qdpc/8-3-16-2-ssed-single, tests/qdpc/8-3-16-2-ssef-single,
	  tests/qdpc/README, tests/qdpc/cg-solver1.c,
	  tests/qdpc/op-ssed.res, tests/qdpc/op-ssef.res,
	  tests/qdpc/ssed-test: Imported sources

2006-09-13 13:36  bjoo

	* other_libs/cg-dwf/: AUTHORS, COPYING, INSTALL, Makefile.am,
	  Makefile.original, NEWS, README, acinclude.m4, aclocal.m4,
	  algorithm2e.sty, cg-dwf-config.in, configure, configure.ac,
	  dwf-altivecf.c, dwf-altivecf.h, dwf-bluelightd.c,
	  dwf-bluelightd.h, dwf-bluelightf.c, dwf-bluelightf.h, dwf-ssed.c,
	  dwf-ssed.h, dwf-ssef.c, dwf-ssef.h, dwf-tables.h, dwf.c, dwf.nw,
	  dwf.pdf, interface.nw, interface.pdf, autoconfdir/depcomp,
	  autoconfdir/install-sh, autoconfdir/missing,
	  config/altivecf.conf, config/bluelightd.conf, config/default,
	  config/ssed.conf, config/ssef.conf, tests/bluelight/Makefile,
	  tests/bluelight/README, tests/bluelight/bl.c,
	  tests/bluelight/main.c, tests/qdpc/.DS_Store,
	  tests/qdpc/8-3-16-2-1-altivecf-single,
	  tests/qdpc/8-3-16-2-altivecf-single, tests/qdpc/Makefile,
	  tests/qdpc/cg-solver.c, tests/qdpc/dwf-op.c, tests/qdpc/dwf-run,
	  tests/qdpc/dwf-run-s, tests/qdpc/op-altivecf.res,
	  tests/qdpc/results, tests/qdpc/run-me, tests/xqmp/.gdb_history,
	  tests/xqmp/Makefile, tests/xqmp/README, tests/xqmp/qmp-check.c,
	  tests/xqmp/qmp.c, tests/qdpc/.gdb_history,
	  tests/qdpc/8-3-16-2-1-ssed-single,
	  tests/qdpc/8-3-16-2-1-ssef-single,
	  tests/qdpc/8-3-16-2-ssed-single, tests/qdpc/8-3-16-2-ssef-single,
	  tests/qdpc/README, tests/qdpc/cg-solver1.c,
	  tests/qdpc/op-ssed.res, tests/qdpc/op-ssef.res,
	  tests/qdpc/ssed-test: Initial revision

2006-09-11 15:35  bjoo

	* scripts/test_runners/mpirun_rsh_runner.sh.in: Modified this for
	  mvapich-0.9.8 running

2006-09-09 12:57  tag chroma3-12-0

2006-09-09 12:57  edwards

	* aclocal.m4, configure: Induced changes

2006-09-09 12:55  edwards

	* configure.ac: Changed to 3.12.0

2006-09-09 12:54  edwards

	* NEWS: Info on 3.12.0

2006-09-08 12:33  edwards

	* scripts/test_runners/mpirun_rsh_runner.sh.in: Changed run nodes
	  to qcd6n319 and qcd6n320

2006-09-08 00:34  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Comment out
	  the external field stuff for the moment.

2006-09-07 15:11  edwards

	* lib/meas/inline/inline.h: Added missing include of schrfun.h

2006-09-07 10:02  bjoo

	* lib/actions/ferm/fermacts/stout_utils.cc: Added a (REAL) cast to
	  sqrt(2) to stop BG/L builds complaining about ambiguity in the
	  sqrt

2006-09-07 09:16  bjoo

	* mainprogs/tests/t_stout_state.cc: Updated t_stout_state to stop
	  the nightly failures

2006-09-07 00:24  edwards

	* lib/actions/: ferm/fermacts/ferm_createstate_aggregate_w.cc,
	  ferm/fermacts/ferm_createstate_reader_w.cc,
	  ferm/fermacts/fermacts_aggregate_w.cc,
	  ferm/fermacts/prec_clover_fermact_w.cc,
	  ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  gauge/gaugeacts/gauge_createstate_aggregate.cc,
	  gauge/gaugeacts/gaugeacts_aggregate.cc: Rearranged where
	  ferm_createstate and gauge_createstate are registered.  Removed
	  from clover & dwf code. Now the registrations are properly in the
	  fermact or gaugeact registrations. The old way of having a bool
	  registered within the readers was incorrect.

2006-09-07 00:22  edwards

	* lib/actions/ferm/fermacts/stout_utils.cc: Changed QMP_fprintf to
	  simply fprintf.

2006-09-06 21:26  bjoo

	* lib/: Makefile.am,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  actions/ferm/invert/invcg2_array.cc,
	  actions/gauge/gaugeacts/gauge_createstate_aggregate.cc,
	  actions/gauge/gaugeacts/stout_gaugestate.cc,
	  actions/gauge/gaugeacts/stout_gaugestate.h,
	  actions/gauge/gaugebcs/simple_gaugebc.h: Added stout gaugestate.
	  Deriv doesnt work yet.

2006-09-06 15:05  bjoo

	* aclocal.m4, lib/Makefile.am,
	  lib/actions/ferm/linop/prec_slic_linop_w.cc,
	  lib/update/molecdyn/monomial/fixed_random_ferm_monomial.cc,
	  lib/update/molecdyn/monomial/fixed_random_ferm_monomial.h,
	  mainprogs/tests/t_stout_state.cc: Factored the getQsAndC and
	  getFsAndBs and stout_smear and deriv_recurse functions off into
	  stout_utils.h and stout_utils.cc  and added template parameters
	  to the stout_fermstate for eventual use in chiral fermions.
	  Checked things still work and they do. Next move is to introduce
	  a stout gauge state

2006-09-06 14:59  bjoo

	* lib/actions/ferm/fermacts/: stout_fermstate_w.cc,
	  stout_fermstate_w.h, stout_utils.cc, stout_utils.h: Moved most of
	  the stouting functions into stout_utils.h and cc from here. Also
	  template<T,P,Q> ified the whole thing so that eventually we can
	  use stouting in DWF

2006-09-06 10:31  edwards

	* lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h: Added
	  sanity check on length of monomial group versus the number of
	  step sizes.

2006-09-06 09:41  bjoo

	* tests/t_leapfrog/: t_leapfrog.fixed_X_action_stout.out.xml,
	  t_leapfrog.prec_clover_stout.out.xml: New regression test output

2006-09-06 09:38  bjoo

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Reworked
	  debugging output

2006-09-06 09:18  bjoo

	* lib/actions/ferm/fermacts/: stout_fermstate_w.cc,
	  stout_fermstate_w.h: Added extra filtering onto stout fermact for
	  corner cases

2006-09-05 23:43  edwards

	* lib/actions/ferm/qprop/: asqtad_cps_wrapper_qprop.h,
	  asqtad_qprop.h, dwf_qpropt_w.h, dwf_quarkprop4_w.h,
	  nef_quarkprop4_w.h, qprop.h, qprop_w.h, quarkprop4_multi_w.h,
	  quarkprop4_s.h, quarkprop4_w.h: Added emacs controls.

2006-09-02 22:26  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Changed how
	  corner case is handled. Now there is a flag set and the corner
	  case code is called if various conditions are met. The problems
	  seem to be that c1 can be moderately large (0.0125) but have
	  c0abs/c0max=1 within precision causing theta to go to nan. So, we
	  now check for the closeness of c0abs-c0max only if the small c1
	  case is not met.

2006-09-02 20:11  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Bug fix!! There
	  was a b1[2].real() that should have been should have been imag().

2006-09-01 15:36  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Changed cutoff on
	  corner case from 1.0e-4 to 4.0e-3. With the previous value I
	  still ran into nan's. Also, Colin Morningstart used this new
	  value.

2006-08-31 16:03  bjoo

	* tests/t_leapfrog/: t_leapfrog.fixed_X_action_stout.out.xml,
	  t_leapfrog.prec_clover_stout.ini.xml,
	  t_leapfrog.prec_clover_stout.out.xml: Added new regressions to
	  stout force

2006-08-31 12:40  bjoo

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Patched for when
	  c0 and c1 are small. Now works for unit gauge too

2006-08-30 21:31  bjoo

	* lib/util/gauge/eesu3.cc: Added a missing 0

2006-08-30 00:59  edwards

	* tests/t_leapfrog/t_leapfrog.fixed_X_action_stout.out.xml: Updated
	  test with new binary.

2006-08-29 23:18  tag chroma3-11-2

2006-08-29 23:18  edwards

	* aclocal.m4, configure: Induced changes

2006-08-29 23:16  edwards

	* configure.ac: Changed to 3.11.2

2006-08-29 23:16  edwards

	* NEWS: More info on 3.11.2

2006-08-29 23:15  edwards

	* NEWS: Info on 3.11.2

2006-08-29 22:57  edwards

	* lib/meas/inline/hadron/inline_hadspec_w.cc: Changed hadspec to
	  check for the presence of DisplacementType, and if not present
	  assume it is NONE.

2006-08-29 22:56  edwards

	* lib/io/qprop_io.cc: Changed backwards compatibility support for
	  disp_length and disp_dir to now write out the SIMPLE_DISPLACEMENT
	  group.

2006-08-29 22:10  edwards

	* lib/util/ft/sftmom.cc: Technically a bug fix. The test for a
	  zero_offset should only be in directions not in the fourier
	  transform. E.g., there was a missing test of mu==decay_dir.

2006-08-29 21:44  edwards

	* lib/io/qprop_io.cc: Small bug fix. The path to "FermionAction" in
	  ChromaProp in versions 4 thu 6 needed "/FermionAction".

2006-08-29 11:58  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Turned off
	  debugging.

2006-08-29 11:51  edwards

	* scripts/test_runners/mpirun_rsh_runner.sh.in: Changed machine
	  names.

2006-08-28 17:44  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Put in a fix for
	  a check of theta. However, still left in some debugging that
	  should be removed. Set cutoff to 1.0e-6.

2006-08-26 01:51  edwards

	* lib/meas/gfix/polar_dec.h: Doxygen fix.

2006-08-26 01:50  edwards

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  lwldslash_base_array_w.cc, lwldslash_base_array_w.h,
	  lwldslash_base_w.cc, lwldslash_base_w.h, polynomial_op.h,
	  unprec_hamberwu_linop_w.cc, unprec_parwilson_linop_w.cc,
	  unprec_w12_linop_w.cc, unprec_wilson_linop_w.cc: Doxygen fixes.

2006-08-26 01:44  edwards

	* lib/: linearop.h, actions/ferm/linop/clover_term_base_w.h:
	  Doxygen fixes.

2006-08-26 01:42  edwards

	* lib/actions/ferm/linop/: polprec_op.h, polynomial_op.h: Fixed
	  doxygen comments

2006-08-26 01:40  edwards

	* lib/: linearop.h, state.h: Fixed doxygen comments.

2006-08-25 22:13  edwards

	* mainprogs/tests/t_leapfrog.cc: Added some START_CODE/END_CODE

2006-08-25 22:12  edwards

	* mainprogs/main/: chroma.cc, hmc.cc, purgaug.cc: Added some
	  START_CODE/END_CODE.

2006-08-25 22:08  edwards

	* lib/: actions/ferm/fermbcs/schroedinger_fermbc_w.h,
	  actions/ferm/fermbcs/simple_fermbc.h,
	  actions/ferm/fermbcs/twisted_fermbc_w.h,
	  actions/ferm/linop/lwldslash_array_pab_w.cc,
	  actions/ferm/linop/lwldslash_array_sse_w.cc,
	  actions/ferm/linop/lwldslash_array_w.cc,
	  actions/ferm/linop/lwldslash_base_w.cc,
	  actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  actions/ferm/linop/prec_slic_linop_w.cc,
	  actions/ferm/linop/prec_wilson_linop_w.cc,
	  actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  actions/ferm/linop/unprec_wilson_linop_w.cc,
	  actions/gauge/gaugeacts/aniso_spectrum_gaugeact.cc,
	  actions/gauge/gaugeacts/lw_1loop_gaugeact.cc,
	  actions/gauge/gaugeacts/lw_tree_gaugeact.cc,
	  actions/gauge/gaugeacts/pg_gaugeact.cc,
	  actions/gauge/gaugeacts/plaq_gaugeact.cc,
	  actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.cc,
	  actions/gauge/gaugeacts/rbc_gaugeact.cc,
	  actions/gauge/gaugeacts/rect_gaugeact.cc,
	  actions/gauge/gaugeacts/rg_gaugeact.cc,
	  actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.cc,
	  actions/gauge/gaugeacts/wilson_gaugeact.cc,
	  update/molecdyn/hamiltonian/abs_hamiltonian.h,
	  update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  update/molecdyn/hmc/abs_hmc.h,
	  update/molecdyn/hmc/global_metropolis_accrej.cc,
	  update/molecdyn/hmc/global_metropolis_accrej.h,
	  update/molecdyn/hmc/lcm_hmc.h,
	  update/molecdyn/integrator/abs_integrator.h,
	  update/molecdyn/integrator/integrator_aggregate.cc,
	  update/molecdyn/integrator/integrator_aggregate.h,
	  update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  update/molecdyn/integrator/lcm_integrator_leaps.h,
	  update/molecdyn/integrator/lcm_minimum_norm2_integrator.h,
	  update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc,
	  update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h,
	  update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc,
	  update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h,
	  update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc,
	  update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h,
	  update/molecdyn/integrator/lcm_sexton_weingarten.cc,
	  update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  update/molecdyn/integrator/lcm_sw_min_mixed.cc,
	  update/molecdyn/integrator/lcm_sw_min_mixed.h,
	  update/molecdyn/integrator/md_integrator_factory.h,
	  update/molecdyn/monomial/fixed_random_ferm_monomial.cc,
	  update/molecdyn/monomial/genapprox.cc,
	  update/molecdyn/monomial/monomial_aggregate_w.cc,
	  update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h,
	  update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc,
	  update/molecdyn/monomial/prec_logdet_ee_monomial_w.h,
	  update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc,
	  update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h,
	  update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h,
	  update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  update/molecdyn/predictor/circular_buffer.h,
	  update/molecdyn/predictor/last_solution_predictor.h,
	  update/molecdyn/predictor/linear_extrap_predictor.cc,
	  update/molecdyn/predictor/linear_extrap_predictor.h,
	  update/molecdyn/predictor/lu_solve.cc,
	  update/molecdyn/predictor/lu_solve.h,
	  update/molecdyn/predictor/mre_extrap_predictor.cc,
	  update/molecdyn/predictor/mre_extrap_predictor.h,
	  update/molecdyn/predictor/predictor_aggregate.cc,
	  update/molecdyn/predictor/zero_guess_predictor.cc,
	  update/molecdyn/predictor/zero_guess_predictor.h: Removed
	  dosisms. Added missing START_CODE/END_CODE. Did some indentation.

2006-08-25 19:56  edwards

	* lib/: actions/ferm/linop/clover_term_base_w.cc,
	  actions/ferm/linop/clover_term_qdp_w.cc,
	  actions/ferm/linop/prec_clover_linop_w.cc, util/gauge/reunit.cc,
	  util/gauge/sun_proj.cc, util/gauge/sun_proj.h,
	  util/gauge/sunfill.cc, util/gauge/sunfill.h,
	  util/gauge/taproj.cc, util/gauge/taproj.h: More doxygen comments,
	  adding missing, START_CODE/END_CODE, and indentation.

2006-08-25 19:46  edwards

	* lib/util/gauge/: conjgauge.h, constgauge.h, eesu2.h, eesu3.h,
	  eeu1.h, expm12.h, expmat.h, expsu3.cc, gauge.h, gauge_s.h,
	  gauge_startup.cc, hotst.h, rgauge.h, shift2.cc, shift2.h,
	  stag_phases_s.cc, stag_phases_s.h, su2extract.h, sunfill.h,
	  taproj.h, unit_check.cc, unit_check.h, weak_field.h: Removed
	  dosisms.

2006-08-25 16:24  edwards

	* tests/: hmc/hmc.prec_wilson.out.xml, purgaug/purgaug.out.xml,
	  purgaug/purgaug.sfnonpt.out.xml: Updated regression tests for new
	  plaquette output.

2006-08-25 15:28  edwards

	* lib/meas/: glue/mesplq.h, inline/glue/inline_plaquette.cc: Added
	  plane_plaq to output of inline measurement.

2006-08-25 13:15  edwards

	* lib/update/molecdyn/monomial/: gauge_monomial.h,
	  one_flavor_rat_monomial_w.h, prec_logdet_ee_monomial_w.h,
	  two_flavor_hasenbusch_monomial_w.h, two_flavor_monomial_w.h:
	  Added START_CODE() and END_CODE().

2006-08-24 17:16  tag chroma3-11-1

2006-08-24 17:16  edwards

	* NEWS: Info on 3.11.1

2006-08-24 17:10  edwards

	* aclocal.m4, configure: Induced changes

2006-08-24 17:08  edwards

	* configure.ac: Changed to 3.11.1

2006-08-24 17:07  edwards

	* tests/: chroma/eig/ritz_Hw-v1.out.xml,
	  chroma/gfix/coulgauge/coulgauge.out.xml,
	  chroma/glue/fuzwilp/fuzwilp.out.xml,
	  chroma/glue/wilslp/wilslp.out.xml,
	  chroma/hadron/bar3ptfn/bar3ptfn.out.xml,
	  chroma/hadron/building_blocks/bb.out.xml,
	  chroma/hadron/hadspec/hadspec.out.xml,
	  chroma/hadron/make_source/dilute.out.xml,
	  chroma/hadron/make_source/make_source.out.xml,
	  chroma/hadron/make_source/source-deriv.out.xml,
	  chroma/hadron/make_source/source-displace.out.xml,
	  chroma/hadron/mesonspec/mesonspec.out.xml,
	  chroma/hadron/mres/mres.out.xml,
	  chroma/hadron/noisy_building_blocks/nbb.out.xml,
	  chroma/hadron/propagator/prec_clover.out.xml,
	  chroma/hadron/propagator/prec_dwf.out.xml,
	  chroma/hadron/propagator/prec_ht_contfrac5d.out.xml,
	  chroma/hadron/propagator/prec_ovext.out.xml,
	  chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  chroma/hadron/propagator/prec_parwilson.out.xml,
	  chroma/hadron/propagator/prec_wilson-smearing.out.xml,
	  chroma/hadron/propagator/prec_wilson-twisted.out.xml,
	  chroma/hadron/propagator/prec_wilson.out.xml,
	  chroma/hadron/propagator/prec_zolo_nef.out.xml,
	  chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  chroma/hadron/propagator/unprec_clover.out.xml,
	  chroma/hadron/propagator/unprec_dwftransf.out.xml,
	  chroma/hadron/propagator/unprec_hamberwu.out.xml,
	  chroma/hadron/propagator/unprec_ovext.out.xml,
	  chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  chroma/hadron/propagator/unprec_zolo_nef.out.xml,
	  chroma/hadron/seqsource/seqsource-baryon.out.xml,
	  chroma/hadron/seqsource/seqsource-meson.out.xml,
	  chroma/hadron/seqsource/seqsource-photon.out.xml,
	  chroma/hadron/sink_smear/sink-deriv.out.xml,
	  chroma/hadron/sink_smear/sink-displace.out.xml,
	  chroma/hadron/sink_smear/sink_smearing.out.xml,
	  chroma/hadron/spectrum/spectrum.out.xml,
	  chroma/hadron/spectrumOct/spectrumOct-v11.out.xml,
	  chroma/hadron/stoch_baryon/stoch_baryon.out.xml,
	  chroma/hadron/stoch_meson/stoch_meson.out.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.out.xml,
	  chroma/io/nersc_read_obj/nersc_read_obj.out.xml,
	  chroma/io/nersc_write_obj/nersc_write_obj.out.xml,
	  chroma/io/qio_read_obj/qio_read_obj.out.xml,
	  chroma/io/qio_write_obj/qio_write_obj.out.xml,
	  chroma/io/szin_read_obj/szin_read_obj.out.xml,
	  chroma/io/szin_write_obj/szin_write_obj.out.xml,
	  chroma/schrfun/schrfun.out.xml,
	  chroma/smear/link_smear/link_smear.out.xml,
	  hmc/hmc.prec_wilson.out.xml, purgaug/purgaug.out.xml,
	  purgaug/purgaug.sfnonpt.out.xml, spectrum_s/regres.pl,
	  spectrum_s/spectrum_s.ini.xml, spectrum_s/spectrum_s.out.xml,
	  spectrum_s/spectrum_s.xml, spectrum_s/spectrum_s_reg.xml,
	  spectrum_s/spectrum_s_reg_test_output.xml,
	  spectrum_s/spectrum_s_test_output.xml,
	  t_leapfrog/t_leapfrog.aniso_spectrum.out.xml,
	  t_leapfrog/t_leapfrog.fixed_X_action_stout.out.xml,
	  t_leapfrog/t_leapfrog.lw.sfnonpt.out.xml,
	  t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml,
	  t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml,
	  t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.out.xml,
	  t_leapfrog/t_leapfrog.prec_1flav_dwf.out.xml,
	  t_leapfrog/t_leapfrog.prec_1flav_wilson.out.xml,
	  t_leapfrog/t_leapfrog.prec_2flav_clover.out.xml,
	  t_leapfrog/t_leapfrog.prec_2flav_clover.sfnonpt.out.xml,
	  t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.out.xml,
	  t_leapfrog/t_leapfrog.prec_clover_stout.out.xml,
	  t_leapfrog/t_leapfrog.prec_contfrac.out.xml,
	  t_leapfrog/t_leapfrog.prec_dwf.out.xml,
	  t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.out.xml,
	  t_leapfrog/t_leapfrog.prec_parwilson.out.xml,
	  t_leapfrog/t_leapfrog.prec_wilson.out.xml,
	  t_leapfrog/t_leapfrog.rect_gaugeact.out.xml,
	  t_leapfrog/t_leapfrog.rect_gaugeact_1.out.xml,
	  t_leapfrog/t_leapfrog.rect_gaugeact_aniso.out.xml,
	  t_leapfrog/t_leapfrog.rect_gaugeact_c1t0.out.xml,
	  t_leapfrog/t_leapfrog.rect_gaugeact_omit2linkT.out.xml,
	  t_leapfrog/t_leapfrog.two_plaq_spatial_gaugeact.out.xml,
	  t_leapfrog/t_leapfrog.unprec_clover.out.xml,
	  t_leapfrog/t_leapfrog.unprec_dwf.out.xml,
	  t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.out.xml,
	  t_leapfrog/t_leapfrog.unprec_wilson.out.xml: Regenerated all
	  canonical outputs because of the change of output from the
	  plaquette measurement. Also, the newest QDP now has more
	  precision on double output.

2006-08-24 17:04  edwards

	* lib/meas/: glue/mesplq.cc, glue/polylp.cc, glue/polylp.h,
	  inline/glue/inline_polylp.cc: Rearranged plaquette measurement a
	  bit. Have added measurement of all possible planes. Added an
	  overloading of polylp.

2006-08-24 00:19  edwards

	* tests/chroma/hadron/: spectrum/spectrum.metric.xml,
	  spectrumOct/spectrumOct-v11.metric.xml: Changed pion tests to use
	  complex.

2006-08-23 23:18  edwards

	* lib/meas/glue/block.cc: Removed redundant calc of u_dble.

2006-08-23 23:14  edwards

	* lib/meas/glue/block.cc: Small code tidies.

2006-08-23 23:14  edwards

	* lib/util/gauge/shift2.h: Added doxygen comments.

2006-08-23 22:37  edwards

	* lib/Makefile.am: Added in block, fuzglue, polycor, gluecor.

2006-08-23 22:34  edwards

	* lib/util/gauge/: shift2.cc, shift2.h: A power of 2 shift of a
	  gauge field.

2006-08-23 22:34  edwards

	* lib/meas/smear/ape_smear.cc: Moved shift to
	  chroma/lib/util/gauge.

2006-08-23 22:33  edwards

	* lib/meas/glue/: block.cc, block.h, fuzglue.cc, fuzglue.h,
	  gluecor.cc, gluecor.h, polycor.cc, polycor.h: Converted from
	  szin.

2006-08-21 03:32  edwards

	* lib/actions/ferm/fermacts/prec_clover_fermact_w.cc: Removed all
	  remnants of Stout hacks.

2006-08-20 16:13  edwards

	* tests/t_leapfrog/t_leapfrog.prec_2flav_clover-stout3d.ini.xml:
	  Removed since replaced by another file.

2006-08-19 15:29  tag chroma3-11-0

2006-08-19 15:29  flemingg

	* NEWS, configure, configure.ac, lib/meas/hadron/hybmeson_w.cc,
	  lib/meas/hadron/mesons_w.cc,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_hadspec_w.cc,
	  lib/meas/inline/hadron/inline_mesonspec_w.cc,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.cc,
	  lib/meas/inline/hadron/inline_spectrumOct_w.cc,
	  lib/meas/inline/hadron/inline_spectrum_w.cc,
	  lib/util/ft/sftmom.cc, lib/util/ft/sftmom.h,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.out.xml,
	  tests/chroma/hadron/building_blocks/bb.dat.xml,
	  tests/chroma/hadron/building_blocks/bb.out.xml,
	  tests/chroma/hadron/hadspec/hadspec.out.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.out.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.dat_0.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.dat_1.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.out.xml,
	  tests/chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml,
	  tests/chroma/hadron/spectrum/spectrum.out.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.out.xml: Changed
	  the interface of the slow Fourier transform (SftMom) class to
	  allow for any lattice point to be chosen as the spatial origin.
	  Previously, this meant that the origin was always implicitly
	  (0,0,0,0), which lead to various phase problems.  One example is
	  2pt correlation functions between a point source not at the
	  origin and a sink at non-zero momentum: the overall phase depends
	  upon the location of the source.  Using the new interface, the
	  phase can be made independent of the location of the source by
	  choosing the origin of the Fourier transform to be the location
	  of the source.  Several things remain to be fixed:   (1)
	  sequential sources at non-zero sink momentum,   (2) building
	  blocks with link paths which cross boundaries,   (3) baryonic
	  sequential sources where t_source > t_sink,	    i.e. the
	  boundary is between the source and sink.

2006-08-18 17:51  tag chroma3-10-5

2006-08-18 17:51  tag pre-chroma3-11-0

2006-08-18 17:51  bjoo

	* lib/update/molecdyn/monomial/fixed_random_ferm_monomial.cc: Added
	  regressions for stout states

2006-08-18 17:50  bjoo

	* tests/t_leapfrog/regres.pl: Added the stout smearing to the
	  t_leapfrog regressions

2006-08-18 17:39  bjoo

	* tests/t_leapfrog/: t_leapfrog.fixed_X_action_stout.ini.xml,
	  t_leapfrog.fixed_X_action_stout.metric.xml,
	  t_leapfrog.fixed_X_action_stout.out.xml,
	  t_leapfrog.prec_clover_stout.ini.xml,
	  t_leapfrog.prec_clover_stout.metric.xml,
	  t_leapfrog.prec_clover_stout.out.xml: Output and metric files

2006-08-18 17:16  edwards

	* lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc: Removed
	  unneeded dependence on stout_fermstate.

2006-08-18 16:17  bjoo

	* lib/actions/ferm/fermacts/: stout_fermstate_params.cc,
	  stout_fermstate_w.cc: Checked corner case where thin link is unit
	  gauge, or where rho_munu=0. No longer produces NaNs but still not
	  quite right for unit gauge. Rho munu case is instead done by not
	  smearing in that direction at all

2006-08-18 12:03  edwards

	* aclocal.m4, configure: Induced changes

2006-08-18 12:02  edwards

	* configure.ac: Changed to 3.10.4

2006-08-18 11:59  edwards

	* NEWS: Info on 3.10.4

2006-08-18 11:51  edwards

	* lib/: actions/ferm/fermacts/ferm_createstate_aggregate_s.cc,
	  actions/ferm/fermacts/ferm_createstate_aggregate_w.cc,
	  actions/ferm/fermacts/ferm_createstate_reader_s.cc,
	  actions/ferm/fermacts/ferm_createstate_reader_w.cc,
	  actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/fermbcs/fermbcs_aggregate_s.cc,
	  actions/ferm/fermbcs/fermbcs_aggregate_w.cc,
	  actions/ferm/fermbcs/fermbcs_reader_s.cc,
	  actions/ferm/fermbcs/fermbcs_reader_s.h,
	  actions/ferm/fermbcs/fermbcs_reader_w.cc,
	  actions/ferm/invert/multi_syssolver_mdagm_aggregate.cc,
	  actions/ferm/invert/syssolver_linop_aggregate.cc,
	  actions/ferm/invert/syssolver_mdagm_aggregate.cc,
	  actions/ferm/invert/syssolver_polyprec_aggregate.cc,
	  actions/ferm/linop/llincomb.h,
	  actions/ferm/qprop/nef_quarkprop4_w.h,
	  actions/ferm/qprop/quarkprop4_s.cc,
	  actions/gauge/gaugeacts/gauge_createstate_aggregate.cc,
	  actions/gauge/gaugeacts/gaugeacts_aggregate.cc,
	  actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  meas/inline/hadron/inline_polar_source_w.cc: Removed dos-isms.

2006-08-17 16:56  tag chroma3-10-4

2006-08-17 16:56  bjoo

	* mainprogs/tests/: t_leapfrog.cc, t_stout_state.cc: OPtimized and
	  bugfixed

2006-08-17 16:50  bjoo

	* tests/t_leapfrog/: t_leapfrog.fixed_X_action_stout.ini.xml,
	  t_leapfrog.prec_clover_stout.ini.xml: Test .ini files for
	  t_leapfrog with stout states

2006-08-17 16:45  bjoo

	* lib/actions/ferm/fermacts/: fermacts_w.h,
	  stout_fermstate_params.cc, stout_fermstate_w.cc,
	  stout_fermstate_w.h: Optimised stout_fermstate fixed bug with
	  orthog dir

2006-08-17 13:16  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.metric.xml,
	  purgaug.out.xml: Updated again.

2006-08-16 21:47  edwards

	* mainprogs/main/purgaug.cc: Overhauled how update number is used
	  and warmups. Also changed how checkpoints are written.

2006-08-16 21:42  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.out.xml,
	  purgaug.sfnonpt.out.xml: Updated

2006-08-16 13:10  bjoo

	* lib/: Makefile.am, handle.h,
	  actions/ferm/fermacts/ferm_createstate_aggregate_w.cc,
	  actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/fermacts/prec_slic_fermact_w.cc,
	  actions/ferm/fermacts/prec_slic_fermact_w.h,
	  actions/ferm/fermacts/stout_fermstate_w.cc,
	  actions/ferm/fermacts/stout_fermstate_w.h,
	  actions/ferm/linop/prec_slic_linop_w.cc,
	  actions/ferm/linop/prec_slic_linop_w.h,
	  meas/hadron/simple_baryon_operator_w.cc,
	  update/molecdyn/integrator/lcm_integrator_leaps.cc: Added SLIC
	  fermions

2006-08-16 11:44  edwards

	* tests/regres.pl: Turned regression tests back on.

2006-08-15 17:54  tag chroma3-10-3

2006-08-15 17:54  bjoo

	* NEWS, configure: Added to news about v3.10.3 and made note in
	  NEWS	about the meaning of nontrivialP() changing for FermBCs

2006-08-15 17:48  bjoo

	* configure.ac: Moved version tag to 3.10.3

2006-08-15 17:45  bjoo

	* lib/: fermbc.h, actions/ferm/fermacts/stout_fermstate_w.cc,
	  actions/ferm/fermacts/stout_fermstate_w.h,
	  actions/ferm/fermbcs/simple_fermbc.h: Hacked stout_fermstate to
	  handle SF, PERIODIC, ANTIPERIODIC and DIRICHLET boundaries.
	  TWISTED is not yet expected to work as its modif() operation is
	  not its own inverse

2006-08-15 11:40  bjoo

	* mainprogs/tests/t_stout_state.cc: Merge complete. Stout links
	  work fine for NONPERT SF boundaries, and also for periodic and
	  hopefully zero boundaries. Still worried about antiperiodic ones
	  and possibly twisted ones

2006-08-15 09:17  bjoo

	* aclocal.m4, lib/Makefile.am, lib/fermbc.h, lib/state.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/stout_fermstate_w.cc,
	  lib/actions/ferm/fermacts/stout_fermstate_w.h,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/util/gauge/expmat.cc, lib/util/gauge/expmat.h,
	  lib/util/gauge/reunit.cc, lib/util/gauge/reunit.h,
	  lib/util/gauge/taproj.cc, lib/util/gauge/taproj.h,
	  mainprogs/tests/t_leapfrog.cc, mainprogs/tests/t_stout_state.cc,
	  tests/regres.pl: Just merging in some stout stuff, update patches
	  and other minor things. No label. Needs regression run

2006-08-15 09:09  bjoo

	* lib/update/molecdyn/monomial/: fixed_random_ferm_monomial.cc,
	  fixed_random_ferm_monomial.h, monomial_aggregate_w.cc,
	  two_flavor_monomial_w.h: Added a monomial to do a simple action
	  of 2 Re Tr (UX) where X is a fixed SU(3) field

2006-08-13 15:34  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.h: Removed
	  StoutFermState on getFsAndBs. Causes gcc4 to complain.

2006-08-13 15:30  edwards

	* lib/actions/ferm/fermacts/: stout_fermstate_w.cc,
	  stout_fermstate_w.h: Removed the extraneous "const" on a "const
	  bool" argument.

2006-08-12 21:11  bjoo

	* lib/actions/ferm/fermacts/: stout_fermstate_w.cc,
	  stout_fermstate_w.h: Now scales as dt**2 over a traj of length 1.
	  Hooray! Now just need to worry about bc-s

2006-08-11 14:12  edwards

	* lib/Makefile.am: Removed obsolete inline ape, hyp and stout
	  smear.

2006-08-11 14:11  edwards

	* lib/meas/: inline/smear/inline_ape_smear.cc,
	  inline/smear/inline_ape_smear.h,
	  inline/smear/inline_hyp_smear.cc,
	  inline/smear/inline_hyp_smear.h,
	  inline/smear/inline_smear_aggregate.cc,
	  inline/smear/inline_stout_smear.cc,
	  inline/smear/inline_stout_smear.h, inline/smear/smear.h,
	  smear/stout_link_smearing.cc, smear/stout_link_smearing.h,
	  smear/stout_smear.cc, smear/stout_smear.h: Removed obsolete
	  inline versions of ape, hyp and stout smear in favor of link
	  smear. Added a smear_dirs to stout_smear

2006-08-11 14:10  edwards

	* tests/chroma/smear/: ape_smear/ape_smear.ini.xml,
	  ape_smear/ape_smear.out.xml, hyp_smear/hyp_smear_v4.ini.xml,
	  hyp_smear/hyp_smear_v4.out.xml,
	  stout_smear/stout_smear_v2.ini.xml,
	  stout_smear/stout_smear_v2.out.xml: Removed obsolete tests. Now
	  uses link_smear instead.

2006-08-11 14:10  edwards

	* tests/chroma/smear/link_smear/: link_smear.ini.xml,
	  link_smear.out.xml: Updated tests for new version of stout_smear

2006-08-11 12:13  edwards

	* lib/meas/smear/: ape_smear.cc, ape_smear.h, fuzz_smear.cc,
	  fuzz_smear.h, hyp_smear.cc, hyp_smear.h, hyp_smear3d.cc,
	  hyp_smear3d.h, laplacian.cc, laplacian.h,
	  quark_displacement_factory.h, quark_smearing_factory.h,
	  stout_smear.cc, stout_smear.h, wvfkind.h: Added doxygen comments
	  and some indentation.

2006-08-11 11:23  edwards

	* aclocal.m4, configure: Induced changes

2006-08-11 11:23  edwards

	* configure.ac: Changed to 3.10.2

2006-08-07 14:16  edwards

	* tests/t_stout_state/t_stout_state.out.xml: Fixed output.

2006-08-07 14:13  edwards

	* lib/actions/ferm/fermacts/: stout_fermstate_params.cc,
	  stout_fermstate_params.h: Added sm_fact.

2006-08-07 14:09  edwards

	* tests/t_stout_state/: t_stout_state.ini.xml,
	  t_stout_state.out.xml: Change in params.

2006-08-07 00:06  edwards

	* mainprogs/tests/t_stout_state.cc: Fix. Seems to actually work!

2006-08-07 00:06  edwards

	* tests/t_stout_state/: t_stout_state.ini.xml,
	  t_stout_state.out.xml, t_stout_state.xml.ini: New input and
	  output.

2006-08-06 23:40  edwards

	* lib/actions/ferm/fermacts/: stout_fermstate_params.cc,
	  stout_fermstate_params.h: Added default constructor.

2006-08-06 23:38  edwards

	* mainprogs/tests/t_stout_state.cc: Changed fat_force to fat_force2

2006-08-06 23:36  edwards

	* mainprogs/tests/Makefile.am: Moved some t_stout_state,
	  t_aniso_gaugeact and t_gauge_force up to CHECK_PROGRAMS

2006-08-06 12:40  edwards

	* mainprogs/tests/t_stout_state.cc: Now compiles. However, the use
	  of an UnprecWilsonLinOp is rather pointless since no gauge fields
	  are actually inside there. We want to test just the state deriv.

2006-08-06 11:57  edwards

	* lib/actions/gauge/gaugeacts/gaugeacts.h: Added
	  simple_gaugestate.h

2006-08-06 11:57  edwards

	* mainprogs/tests/t_gauge_force.cc: Compiles with new interface.

2006-08-05 19:31  edwards

	* mainprogs/main/chroma.cc: Changed printing of linkage.

2006-08-05 19:30  edwards

	* mainprogs/: tests/t_leapfrog.cc, main/hmc.cc: Added printing of
	  linkage.

2006-08-05 19:29  edwards

	* mainprogs/main/chroma.cc: Oops - little fix in printing linkage.

2006-08-05 19:28  edwards

	* mainprogs/main/chroma.cc: Added a check of linkage

2006-08-04 19:56  edwards

	* tests/t_leapfrog/t_leapfrog.prec_2flav_clover-stout3d.ini.xml:
	  Added tests

2006-08-04 19:56  edwards

	* tests/chroma/hadron/propagator/prec_clover-stout3d.ini.xml: More
	  tests.

2006-08-04 19:54  edwards

	* lib/actions/ferm/fermacts/prec_clover_fermact_w.cc: Added some
	  funny test code.

2006-08-04 19:52  edwards

	* lib/actions/ferm/fermacts/stout_fermstate_w.cc: Bug fixes and
	  lots of checking. Still not quite correct, but getting there.

2006-08-03 17:58  edwards

	* tests/chroma/hadron/propagator/prec_clover-stout3d.ini.xml: Stout
	  param file

2006-08-03 17:14  edwards

	* lib/actions/ferm/fermacts/: stout_fermstate_params.cc,
	  stout_fermstate_params.h, stout_fermstate_w.cc,
	  stout_fermstate_w.h: Changed interface to use a createfermstate.
	  Move initialization of params off to a params struct.

2006-08-03 17:13  edwards

	* lib/actions/ferm/fermacts/prec_clover_fermact_w.cc: Added
	  probably unnecessary linking of createfermstate.

2006-08-03 17:12  edwards

	* lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.cc: Added
	  create stout fermstate

2006-08-03 14:58  edwards

	* aclocal.m4: Induced changes.

2006-08-03 14:55  edwards

	* lib/actions/ferm/fermacts/: stout_fermstate_w.cc,
	  stout_fermstate_w.h: New version of stout codes.

2006-08-03 14:54  edwards

	* lib/actions/ferm/fermacts/extfield_fermstate_w.cc: Had to comment
	  out the code.

2006-08-03 14:54  edwards

	* lib/Makefile.am: Added new fermstate for stout and some commented
	  out flic files.

2006-08-02 00:10  edwards

	* lib/actions/ferm/fermacts/: stout_fermstate_params.cc,
	  stout_fermstate_params.h: Stout params.

2006-08-01 11:58  edwards

	* NEWS: Info on 3.10.1 and 3.10.2

2006-07-22 15:36  tag chroma3-10-2

2006-07-22 15:36  edwards

	* lib/meas/inline/eig/inline_eigbnds.cc: Added more profiling.

2006-07-22 15:35  edwards

	* tests/chroma/eig/eigbnds-v1.out.xml: UPdated output.

2006-07-22 13:44  edwards

	* lib/meas/inline/eig/: inline_eigbnds.cc, inline_eigbnds.h: Added
	  xml file writing.

2006-07-22 13:34  edwards

	* lib/meas/inline/eig/inline_eigbnds.cc: Bug fix. Limit profiling
	  to the subset over which the operator is defined.

2006-07-21 20:55  bjoo

	* mainprogs/tests/t_leapfrog.cc: Added hooks to time aniso spectrum
	  gaugeacts part - this is harmless and should just print 0 for
	  other actions

2006-07-21 20:54  bjoo

	* lib/actions/gauge/gaugeacts/:
	  plaq_plus_spatial_two_plaq_gaugeact.cc,
	  plaq_plus_spatial_two_plaq_gaugeact.h, rect_gaugeact.cc,
	  rect_gaugeact.h: Added timing for forces and swapped a few calls
	  to map more optimally onto faster QDP++ functions

2006-07-21 16:47  edwards

	* tests/chroma/eig/eigbnds-v1.out.xml: Updated output.

2006-07-21 16:42  edwards

	* lib/meas/inline/eig/inline_eigbnds.cc: Added printing of
	  eigenvector profile.

2006-07-21 14:53  edwards

	*
	  lib/actions/gauge/gaugeacts/plaq_plus_spatial_two_plaq_gaugeact.h:
	  Changed tDir() to always return aniso.t_dir.

2006-07-21 14:40  tag chroma3-10-1

2006-07-21 14:40  bjoo

	* aclocal.m4, lib/Makefile.am: Induced changes

2006-07-21 14:39  bjoo

	* lib/actions/gauge/gaugeacts/: aniso_spectrum_gaugeact.cc,
	  aniso_spectrum_gaugeact.h, gaugeacts.h, gaugeacts_aggregate.cc,
	  plaq_plus_spatial_two_plaq_gaugeact.cc, rect_gaugeact.cc,
	  spatial_two_plaq_gaugeact.cc: New ANiso Gaugeact passes
	  regressions for old one.

2006-07-21 14:35  bjoo

	* mainprogs/tests/: Makefile.am, t_aniso_gaugeact.cc: Checks gauge
	  actions for consistency

2006-07-21 10:58  bjoo

	* lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc,
	  plaq_plus_spatial_two_plaq_gaugeact.cc,
	  plaq_plus_spatial_two_plaq_gaugeact.h: Added a combined plaquette
	  plus spatial two plaquette term gives a 20-25% speed improvement

2006-07-20 22:33  edwards

	* tests/t_leapfrog/regres.pl: Changed regression to point to
	  aniso_spectrum

2006-07-20 22:31  edwards

	* tests/chroma/hadron/propagator/prec_dwf.out.xml: Updated
	  regression test.

2006-07-20 16:28  edwards

	* lib/actions/ferm/fermacts/: extfield.h, extfield_fermstate_w.cc:
	  Initial version.

2006-07-20 16:23  edwards

	* aclocal.m4: Induce changs.

2006-07-20 16:21  edwards

	* lib/actions/gauge/gaugeacts/: aniso_spectrum_gaugeact.cc,
	  aniso_spectrum_gaugeact.h: Changed u0s and u0t to u_s and u_t.

2006-07-20 16:21  edwards

	* tests/t_leapfrog/: t_leapfrog.aniso_spectrum.ini.xml,
	  t_leapfrog.aniso_spectrum.metric.xml,
	  t_leapfrog.aniso_spectrum.out.xml,
	  t_leapfrog.morningstar_peardon_aniso.ini.xml,
	  t_leapfrog.morningstar_peardon_aniso.metric.xml,
	  t_leapfrog.morningstar_peardon_aniso.out.xml: Switched
	  morningstar_peardon to aniso_spectrum. Updated output.

2006-07-20 16:08  edwards

	* tests/chroma/hadron/propagator/prec_clover_extfield.ini.xml:
	  Added external field clover.

2006-07-20 16:07  edwards

	* lib/Makefile.am: Added external field version of clover. Added
	  aniso_spectrum_gaugeact.

2006-07-20 16:06  edwards

	* lib/actions/ferm/: fermacts/extfield_aggregate_w.cc,
	  fermacts/extfield_aggregate_w.h, fermacts/extfield_factory_w.h,
	  fermacts/extfield_fermstate_w.h,
	  fermacts/fermacts_aggregate_w.cc,
	  fermacts/prec_clover_extfield_fermact_w.cc,
	  fermacts/prec_clover_extfield_fermact_w.h,
	  linop/prec_clover_extfield_linop_w.cc,
	  linop/prec_clover_extfield_linop_w.h: Added external field
	  version of clover.

2006-07-20 16:06  edwards

	* lib/actions/ferm/linop/: clover_term_qdp_w.cc,
	  clover_term_qdp_w.h: Removed & from create call.

2006-07-20 16:05  edwards

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Added norm.

2006-07-20 15:53  edwards

	* lib/actions/gauge/gaugeacts/: aniso_spectrum_gaugeact.cc,
	  aniso_spectrum_gaugeact.h, gaugeacts_aggregate.cc,
	  mp_gaugeact.cc, mp_gaugeact.h: Moved MP to AnisoSpectrum.

2006-07-20 14:40  edwards

	* lib/actions/gauge/gaugeacts/: aniso_spectrum_gaugeact.cc,
	  aniso_spectrum_gaugeact.h: First version (incorrect params) of
	  Morningstar/Peardon gaugeact.

2006-07-20 14:36  bjoo

	* tests/t_leapfrog/regres.pl: Added Morningstar Peardon test

2006-07-20 14:27  bjoo

	* tests/t_leapfrog/: t_leapfrog.morningstar_peardon_aniso.ini.xml,
	  t_leapfrog.morningstar_peardon_aniso.metric.xml,
	  t_leapfrog.morningstar_peardon_aniso.out.xml: Regression tests
	  form morningstar peardon type gaugeaction

2006-07-20 14:24  bjoo

	* lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc,
	  mp_gaugeact.cc, mp_gaugeact.h: mp_gaugeact works

2006-07-20 14:03  bjoo

	* lib/Makefile.am: Added mp gaugeact stuff

2006-07-20 14:03  bjoo

	* lib/actions/gauge/gaugeacts/: mp_gaugeact.cc, mp_gaugeact.h:
	  First stab at a  Morningstar-Peardon Gauge Action

2006-07-20 11:58  bjoo

	* tests/t_leapfrog/regres.pl: added regression

2006-07-20 11:56  bjoo

	* lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc: Added two
	  plaq spatial gaugeact to aggregate

2006-07-20 11:52  bjoo

	* lib/actions/gauge/gaugeacts/: plaq_gaugeact.cc, plaq_gaugeact.h:
	  Modified PlaqGaugeact to be able to take separate spatial and
	  temporal plaq coeffs

2006-07-20 11:14  bjoo

	* tests/t_leapfrog/regres.pl: Added 2 plaq spatial gaugeact test

2006-07-20 11:03  bjoo

	* tests/t_leapfrog/: t_leapfrog.two_plaq_spatial_gaugeact.ini.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.metric.xml,
	  t_leapfrog.two_plaq_spatial_gaugeact.out.xml: Test files for 2
	  plaq spatial gauge act

2006-07-20 11:00  bjoo

	* lib/actions/gauge/gaugeacts/spatial_two_plaq_gaugeact.cc: Two
	  Plaq Spatial Now Conserves energy as dt\^2

2006-07-19 17:42  bjoo

	* lib/actions/gauge/gaugeacts/: spatial_two_plaq_gaugeact.cc,
	  spatial_two_plaq_gaugeact.h: Doesn't work yet versions of
	  SpatialTwoPlaqGaugeAct

2006-07-19 13:20  bjoo

	* aclocal.m4: Induced changes

2006-07-19 13:19  bjoo

	* lib/Makefile.am: Added spatial_two_plaq_gaugeact

2006-07-18 22:28  bjoo

	* lib/actions/gauge/gaugeacts/rect_gaugeact.cc: Added anisotropy

2006-07-18 22:22  bjoo

	* tests/t_leapfrog/regres.pl: Removed fake_aniso

2006-07-18 22:15  bjoo

	* tests/t_leapfrog/: t_leapfrog.rect_gaugeact_aniso.ini.xml,
	  t_leapfrog.rect_gaugeact_aniso.metric.xml,
	  t_leapfrog.rect_gaugeact_aniso.out.xml: Aniso version

2006-07-18 21:56  bjoo

	* tests/t_leapfrog/: t_leapfrog.rect_gaugeact_omit2linkT.ini.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.metric.xml,
	  t_leapfrog.rect_gaugeact_omit2linkT.out.xml: omit loops of length
	  2 in time - has to agree with the case where time is not ommitted
	  but has coeff 0. It does

2006-07-18 21:48  bjoo

	* tests/t_leapfrog/: t_leapfrog.rect_gaugeact_c1t0.ini.xml,
	  t_leapfrog.rect_gaugeact_c1t0.metric.xml,
	  t_leapfrog.rect_gaugeact_c1t0.out.xml: Set c1t to zero but not
	  omit it

2006-07-18 21:42  bjoo

	* tests/t_leapfrog/: t_leapfrog.rect_gaugeact_1.ini.xml,
	  t_leapfrog.rect_gaugeact_1.metric.xml,
	  t_leapfrog.rect_gaugeact_1.out.xml: Regression files for rect
	  gaugeact with fake anisotropy. It is anisotropic but the
	  anisotropic coefficients are 1 and all links are used

2006-07-17 16:23  tag chroma3-10-0

2006-07-17 16:23  edwards

	* aclocal.m4, configure: Induced changes

2006-07-17 16:22  edwards

	* lib/: Makefile.am, meas/hadron/curcor3_w.cc,
	  meas/hadron/curcor3_w.h: Added a non-functioning curcor3 .

2006-07-17 16:21  edwards

	* configure.ac: Changed to 3.10.0

2006-07-17 16:21  edwards

	* NEWS: Info on 3.10.0

2006-07-17 16:19  edwards

	* lib/meas/inline/hadron/: inline_spectrum_w.cc,
	  inline_spectrum_w.h: Added BlkMax and BlkAccu.

2006-07-17 16:19  edwards

	* tests/chroma/hadron/spectrum/spectrum.out.xml: Updated.

2006-07-17 16:15  edwards

	* tests/chroma/hadron/spectrum/: spectrum.ini.xml,
	  spectrum.out.xml: Changed to version 13 on input and have new
	  BlkMax and BlkAccu flags.

2006-07-16 15:13  edwards

	* tests/hmc/hmc.prec_wilson.out.xml: Uses a more sensible floating
	  point output.

2006-07-16 14:20  edwards

	* tests/hmc/hmc.prec_wilson.out.xml: Updated output.

2006-07-15 17:41  edwards

	* mainprogs/main/hmc.cc: Added timing output

2006-07-14 16:33  bjoo

	* lib/actions/gauge/gaugeacts/: rect_gaugeact.cc, rect_gaugeact.h:
	  First cut at anisotropy. Passes isotropic regressions, but screws
	  up for actual anisotropy it seems when looking at energy
	  conservation

2006-07-14 16:21  bjoo

	* tests/t_leapfrog/: t_leapfrog.rect_gaugeact.ini.xml,
	  t_leapfrog.rect_gaugeact.metric.xml,
	  t_leapfrog.rect_gaugeact.out.xml: Test file for isotropic
	  rectangle gauge act

2006-07-12 00:55  edwards

	* lib/meas/inline/eig/: inline_eigbnds.cc, inline_eigbnds.h:
	  Changed to use GroupXML_t for ferm_act. This fixes some path
	  problem when used under hmc.cc

2006-07-11 00:21  tag chroma3-9-0

2006-07-11 00:21  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.out.xml,
	  purgaug.sfnonpt.ini.xml, purgaug.sfnonpt.out.xml: Changed WILSLP
	  frequency to 1.

2006-07-11 00:18  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.out.xml,
	  purgaug.sfnonpt.ini.xml, purgaug.sfnonpt.out.xml: Fixed to new
	  form of Wilson loops.

2006-07-11 00:08  edwards

	* NEWS: Info on 3.9.0

2006-07-11 00:06  edwards

	* aclocal.m4, configure: Induced changes

2006-07-11 00:06  edwards

	* configure.ac: Changed to 3.9.0

2006-07-11 00:04  edwards

	* tests/chroma/hadron/hadspec/hadspec.metric.xml: Fixed to work.

2006-07-11 00:04  edwards

	* tests/regres.pl: New regressions.

2006-07-10 23:54  edwards

	* tests/chroma/hadron/mesonspec/mesonspec.out.xml: Updated some.

2006-07-10 23:51  edwards

	* lib/meas/inline/hadron/: inline_hadspec_w.cc, inline_hadspec_w.h:
	  Changed to new input/output versions.

2006-07-10 23:51  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Added a const to
	  readAllSinks.

2006-07-10 23:50  edwards

	* lib/Makefile.am: Added mesons2_w.{h,cc}

2006-07-10 23:49  edwards

	* tests/chroma/hadron/hadspec/: hadspec.ini.xml, hadspec.out.xml:
	  New form of output.

2006-07-10 15:53  edwards

	* lib/meas/hadron/: mesons2_w.h, mesons2_w.cc: A complex version.

2006-07-10 15:52  edwards

	* tests/chroma/hadron/spectrum/: spectrum-v12.ini.xml,
	  spectrum-v12.out.xml: Removed these

2006-07-10 15:52  edwards

	* tests/chroma/hadron/spectrum/regres.pl: Removed -v12

2006-07-10 15:51  edwards

	* tests/chroma/hadron/spectrum/: spectrum-v12.metric.xml,
	  spectrum.ini.xml, spectrum.metric.xml, spectrum.out.xml: Moved
	  from -v12 to just spectrum

2006-07-10 15:44  edwards

	* lib/meas/inline/hadron/: inline_mesonspec_w.cc,
	  inline_mesonspec_w.h: Changed to use a "factor" instead of
	  PLUS/MINUS.

2006-07-10 15:44  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Turned on
	  hadspec.

2006-07-10 15:43  edwards

	* lib/meas/inline/hadron/: inline_hadspec_w.cc, inline_hadspec_w.h:
	  First working version.

2006-07-10 15:18  edwards

	* tests/chroma/hadron/hadspec/: hadspec.ini.xml, hadspec.out.xml:
	  Switched to HADRON_SPECTRUM for task name.

2006-07-10 15:17  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.out.xml: Changed from "operation" to "factor"

2006-07-10 15:04  edwards

	* lib/meas/inline/glue/: inline_wilslp.cc, inline_wilslp.h: Added
	  GaugeBC reading.

2006-07-10 15:03  edwards

	* tests/chroma/hadron/hadspec/: hadspec.ini.xml,
	  hadspec.metric.xml, hadspec.out.xml, regres.pl: First versions.

2006-07-10 14:31  edwards

	* tests/chroma/glue/wilslp/: wilslp.ini.xml, wilslp.metric.xml,
	  wilslp.out.xml: Added test of nontrivial gaugebcs

2006-07-10 14:27  edwards

	* tests/chroma/glue/wilslp/: wilslp.ini.xml, wilslp.out.xml: Now
	  use gaugebc

2006-07-10 13:05  tag chroma3-8-2

2006-07-10 13:05  edwards

	* NEWS: Info on 3.8.2

2006-07-10 13:03  edwards

	* aclocal.m4, configure: Induced changes

2006-07-10 13:03  edwards

	* configure.ac: Changed to 3.8.2

2006-07-08 00:34  edwards

	* lib/meas/glue/wilslp.cc: Another small fix to handle t_dir not in
	  the j_decay direction.

2006-07-06 15:51  tag chroma3-8-1

2006-07-06 15:51  edwards

	* tests/chroma/glue/wilslp/wilslp.ini.xml: Changed to include
	  wils_loop1

2006-07-06 13:53  edwards

	* aclocal.m4, configure: Induced changes

2006-07-06 13:50  edwards

	* configure.ac: Changed to 3.8.1

2006-07-06 13:49  edwards

	* NEWS: Infon on 3.8.1

2006-07-06 13:44  edwards

	* tests/chroma/glue/wilslp/wilslp.out.xml: Turned on wils_loop1

2006-07-06 13:43  edwards

	* tests/chroma/glue/wilslp/wilslp.out.xml: Updated output

2006-07-05 15:22  edwards

	* lib/meas/glue/wilslp.cc: Fixes to support asymmetric lattice
	  sizes (note, I mean asymmetric and not necessarily anisotropic).

2006-07-04 13:00  tag chroma3-8-0

2006-07-04 13:00  edwards

	* NEWS: Info on 3.8.0

2006-07-03 23:29  edwards

	* mainprogs/main/wallformfac.cc: Fixed source_type to new
	  conventions.

2006-07-03 23:25  edwards

	* lib/actions/ferm/qprop/: prec_dwf_qprop_array_altivec_w.cc,
	  prec_dwf_qprop_array_altivec_w.h, prec_dwf_qprop_array_sse_w.cc:
	  Fixed to use SysSolverCGParams internally.

2006-07-03 22:56  edwards

	* tests/chroma/hadron/: bar3ptfn/bar3ptfn.out.xml,
	  building_blocks/bb.out.xml, mesonspec/mesonspec.out.xml,
	  seqsource/seqsource-baryon.out.xml,
	  seqsource/seqsource-meson.out.xml,
	  seqsource/seqsource-photon.out.xml,
	  sink_smear/sink-deriv.out.xml, sink_smear/sink-displace.out.xml,
	  sink_smear/sink_smearing.out.xml,
	  stoch_meson/stoch_meson.out.xml: Updated/fixed regression output.

2006-07-03 22:55  edwards

	* lib/: io/qprop_io.cc, io/qprop_io.h,
	  meas/inline/hadron/inline_bar3ptfn_w.cc,
	  meas/inline/hadron/inline_building_blocks_w.cc,
	  meas/inline/hadron/inline_hadspec_w.cc,
	  meas/inline/hadron/inline_make_source_ferm_w.cc,
	  meas/inline/hadron/inline_make_source_w.cc,
	  meas/inline/hadron/inline_mesonspec_w.cc,
	  meas/inline/hadron/inline_mres_w.cc,
	  meas/inline/hadron/inline_mres_w.h,
	  meas/inline/hadron/inline_multi_propagator_w.cc,
	  meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  meas/inline/hadron/inline_propagator_ferm_w.cc,
	  meas/inline/hadron/inline_propagator_w.cc,
	  meas/inline/hadron/inline_qqqNucNuc_w.cc,
	  meas/inline/hadron/inline_seqsource_w.cc,
	  meas/inline/hadron/inline_sink_smear_w.cc,
	  meas/inline/hadron/inline_spectrumOct_w.cc,
	  meas/inline/hadron/inline_spectrumQll.cc,
	  meas/inline/hadron/inline_spectrum_w.cc,
	  meas/inline/hadron/inline_stoch_baryon_w.cc,
	  meas/inline/hadron/inline_stoch_meson_w.cc,
	  meas/inline/schrfun/inline_sfpcac_w.cc,
	  update/molecdyn/monomial/one_flavor_rat_monomial5d_params_w.cc,
	  update/molecdyn/monomial/one_flavor_rat_monomial5d_params_w.h,
	  update/molecdyn/monomial/one_flavor_rat_monomial_params_w.cc,
	  update/molecdyn/monomial/one_flavor_rat_monomial_params_w.h,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc,
	  update/molecdyn/monomial/prec_logdet_ee_monomial_w.h,
	  update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc,
	  update/molecdyn/monomial/two_flavor_hasenbusch_monomial_params_w.cc,
	  update/molecdyn/monomial/two_flavor_hasenbusch_monomial_params_w.h,
	  update/molecdyn/monomial/two_flavor_monomial_params_w.cc,
	  update/molecdyn/monomial/two_flavor_monomial_params_w.h,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc:
	  Converted usage of  source/source_type, fermact, sink/sink_type
	  to using GroupXML_t. Converted all monomials to use GroupXML_t as
	  well.

2006-07-03 12:27  edwards

	* tests/: spectrum_s/spectrum_s_reg_test_output.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.out.xml: New output format.

2006-07-03 12:25  edwards

	* tests/chroma/schrfun/schrfun.out.xml: New output format for
	  InvertParam.

2006-07-03 11:26  edwards

	* lib/fermact.h, lib/invtype.h, lib/polyfermact.h, lib/syssolver.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.cc,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1.h,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2.h,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/invert/invcg2_array.h,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/invert/minvcg_array.cc,
	  lib/actions/ferm/invert/multi_syssolver_cg_params.cc,
	  lib/actions/ferm/invert/multi_syssolver_cg_params.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_aggregate.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_aggregate.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.cc,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/multi_syssolver_mdagm_factory.h,
	  lib/actions/ferm/invert/syssolver_cg_params.cc,
	  lib/actions/ferm/invert/syssolver_cg_params.h,
	  lib/actions/ferm/invert/syssolver_linop.h,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_linop_aggregate.h,
	  lib/actions/ferm/invert/syssolver_linop_cg.cc,
	  lib/actions/ferm/invert/syssolver_linop_cg.h,
	  lib/actions/ferm/invert/syssolver_linop_cg_array.cc,
	  lib/actions/ferm/invert/syssolver_linop_cg_array.h,
	  lib/actions/ferm/invert/syssolver_linop_factory.h,
	  lib/actions/ferm/invert/syssolver_mdagm.h,
	  lib/actions/ferm/invert/syssolver_mdagm_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_aggregate.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_cg.h,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_array.cc,
	  lib/actions/ferm/invert/syssolver_mdagm_cg_array.h,
	  lib/actions/ferm/invert/syssolver_mdagm_factory.h,
	  lib/actions/ferm/invert/syssolver_polyprec.h,
	  lib/actions/ferm/invert/syssolver_polyprec_aggregate.cc,
	  lib/actions/ferm/invert/syssolver_polyprec_aggregate.h,
	  lib/actions/ferm/invert/syssolver_polyprec_cg.cc,
	  lib/actions/ferm/invert/syssolver_polyprec_cg.h,
	  lib/actions/ferm/invert/syssolver_polyprec_factory.h,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h,
	  lib/actions/ferm/qprop/asqtad_qprop.cc,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/prec_staggered_qprop.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/staggered_qprop.cc, lib/io/param_io.cc,
	  lib/io/param_io.h, lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  lib/io/xml_group_reader.cc, lib/io/xml_group_reader.h,
	  lib/io/enum_io/enum_invtype_io.cc,
	  lib/io/enum_io/enum_invtype_io.h, lib/io/enum_io/enum_io.h,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/hadron_s/inline_spectrum_s.cc,
	  lib/meas/inline/hadron_s/inline_spectrum_s.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_params_w.cc,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_params_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_params_w.cc,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_params_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_params_w.cc,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_params_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_params_w.cc,
	  lib/update/molecdyn/monomial/two_flavor_monomial_params_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h,
	  mainprogs/tests/t_disc_loop_s.cc, mainprogs/tests/t_dwf4d.cc,
	  mainprogs/tests/t_dwflocality.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_prec_nef.cc, mainprogs/tests/t_precact_4d.cc,
	  mainprogs/tests/t_precact_5d.cc,
	  mainprogs/tests/t_precact_sse.cc,
	  mainprogs/tests/t_propagator_fuzz_baryon_s.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_nrqcd.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_twisted.cc,
	  mainprogs/tests/t_propagator_w.cc: Changed FermionAction API to
	  produce system solver classes. No longer have a fixed InvertParam
	  set. Removed old inverter enum and support. Have default creation
	  for inverters to solve M*psi=chi, MdagM*psi=chi, and multi-shift
	  support. Some older files still have explicit calls to CG solver.

2006-07-03 11:22  edwards

	* tests/chroma/hadron/: bar3ptfn/bar3ptfn.out.xml,
	  building_blocks/bb.out.xml, make_source/dilute.out.xml,
	  make_source/make_source.out.xml,
	  make_source/source-deriv.out.xml,
	  make_source/source-displace.out.xml, mesonspec/mesonspec.out.xml,
	  mres/mres.out.xml, noisy_building_blocks/nbb.out.xml,
	  propagator/prec_clover.out.xml, propagator/prec_dwf.out.xml,
	  propagator/prec_ht_contfrac5d.out.xml,
	  propagator/prec_ovext.out.xml,
	  propagator/prec_ovlap_contfrac5d.out.xml,
	  propagator/prec_parwilson.out.xml,
	  propagator/prec_wilson-smearing.out.xml,
	  propagator/prec_wilson-twisted.out.xml,
	  propagator/prec_wilson.out.xml, propagator/prec_zolo_nef.out.xml,
	  propagator/unprec-ovlap-zolo4d.out.xml,
	  propagator/unprec-zolo-ev-multi.out.xml,
	  propagator/unprec_clover.out.xml,
	  propagator/unprec_dwftransf.out.xml,
	  propagator/unprec_hamberwu.out.xml,
	  propagator/unprec_ovext.out.xml,
	  propagator/unprec_ovlap_contfrac5d.out.xml,
	  propagator/unprec_zolo_nef.out.xml,
	  seqsource/seqsource-baryon.out.xml,
	  seqsource/seqsource-meson.out.xml,
	  seqsource/seqsource-photon.out.xml,
	  sink_smear/sink-deriv.out.xml, sink_smear/sink-displace.out.xml,
	  sink_smear/sink_smearing.out.xml, spectrum/spectrum-v12.out.xml,
	  spectrumOct/spectrumOct-v11.out.xml,
	  stoch_baryon/stoch_baryon.out.xml,
	  stoch_meson/stoch_meson.out.xml: Updated all tests for new
	  InvertParam output

2006-07-03 11:21  edwards

	* configure: Induced changes

2006-07-03 11:17  edwards

	* lib/Makefile.am: Added new inverter supports.

2006-07-03 11:15  edwards

	* aclocal.m4: Induced changes

2006-07-03 11:15  edwards

	* configure.ac: Changed to 3.8.0

2006-07-03 11:12  tag chroma3-7-4

2006-07-03 11:12  edwards

	* aclocal.m4, configure: Induced changes

2006-07-03 11:11  edwards

	* configure.ac: Change to 3.7.4

2006-07-03 11:10  edwards

	* NEWS: Info on 3.7.4

2006-06-21 16:44  bjoo

	* aclocal.m4: Induced changes

2006-06-21 16:44  bjoo

	* lib/Makefile.am: Added Hasenbusch related files for 5d

2006-06-21 16:42  bjoo

	* lib/update/molecdyn/monomial/: monomial_aggregate_w.cc,
	  prec_constdet_two_flavor_hasenbusch_monomial5d_w.cc,
	  prec_constdet_two_flavor_hasenbusch_monomial5d_w.h,
	  two_flavor_hasenbusch_monomial5d_w.h,
	  unprec_two_flavor_hasenbusch_monomial5d_w.cc,
	  unprec_two_flavor_hasenbusch_monomial5d_w.h: dded 5D hasenbusch
	  term. This is EXPERIMENTAL and UNTESTED but at least it builds.

2006-06-21 14:37  bjoo

	*
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial5d_w.h:
	  Initial header file for two flavor 5D hasenbusch

2006-06-17 14:31  tag chroma3-7-3

2006-06-17 14:31  edwards

	* lib/meas/inline/smear/: inline_ape_smear.cc, inline_ape_smear.h:
	  Fixed BlkAccu again from int to Real.

2006-06-17 14:30  edwards

	* tests/chroma/smear/ape_smear/: ape_smear.ini.xml,
	  ape_smear.out.xml, ape_smear_v2.ini.xml, ape_smear_v2.out.xml:
	  Replaced old input with new input.

2006-06-17 14:25  edwards

	* lib/meas/: inline/smear/inline_hyp_smear.h,
	  smear/ape_link_smearing.cc, smear/ape_link_smearing.h,
	  smear/hyp_link_smearing.cc, smear/hyp_link_smearing.h: Added
	  BlkMax and BlkAccu to input params.

2006-06-17 14:24  edwards

	* tests/chroma/smear/link_smear/: link_smear.ini.xml,
	  link_smear.out.xml: Updated tests.

2006-06-17 14:21  edwards

	* tests/chroma/smear/: hyp_smear/hyp_smear_v4.ini.xml,
	  hyp_smear/hyp_smear_v4.out.xml, link_smear/link_smear.ini.xml,
	  link_smear/link_smear.out.xml: Updated tests.

2006-06-17 13:50  edwards

	* aclocal.m4, configure: Induced changes

2006-06-17 13:49  edwards

	* configure.ac: Info on 3.7.3

2006-06-17 13:49  edwards

	* NEWS: Info on 3.7.3.

2006-06-17 13:47  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Bug fix. Didn't
	  have the correct "_2" for the source/sink labels in the xml
	  output.

2006-06-13 16:22  bjoo

	* lib/meas/inline/smear/inline_hyp_smear.cc: Replaced clock with
	  StopWatch

2006-06-13 16:16  bjoo

	* lib/update/molecdyn/monomial/: two_flavor_polyprec_monomial_w.h,
	  two_flavor_polynomial_monomial_w.h, two_flavor_monomial_w.h,
	  two_flavor_monomial5d_w.h, two_flavor_hasenbusch_monomial_w.h,
	  one_flavor_rat_monomial_w.h, one_flavor_rat_monomial5d_w.h: Added
	  #include<typeinfo> to catch bad cast exception

2006-06-13 16:15  bjoo

	* mainprogs/tests/t_lwldslash_sse.cc: Stripped clock added stop
	  watch

2006-06-13 16:14  bjoo

	* mainprogs/tests/t_lwldslash_array.cc: Stripped clock and added
	  StopWatch

2006-06-13 16:13  bjoo

	* other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c:
	  Changed C plusplus comments to C  comments

2006-06-13 14:19  bjoo

	* lib/meas/inline/io/default_gauge_field.cc: Added
	  #include<typeinfo> to enable bad_cast exceptions

2006-06-13 14:18  bjoo

	* lib/io/szin_io.cc: Reworked timing functions here

2006-06-13 14:16  bjoo

	* lib/io/milc_io.cc: Added time.h header file here - to make it
	  compile on the XT3

2006-06-13 14:16  bjoo

	* lib/actions/ferm/linop/polynomial_op.h: Replaced int
	  bits[maxBits] with multi1d<int> bits(maxBits). Got rid of GNUism.
	  Now compiles on Xt3

2006-06-11 23:39  tag chroma3-7-2

2006-06-11 23:39  edwards

	* aclocal.m4, configure: Induced changes

2006-06-11 23:38  edwards

	* configure.ac: Changed to 3.7.2

2006-06-11 23:38  edwards

	* NEWS: Info on 3.7.2

2006-06-11 23:37  edwards

	* lib/meas/inline/smear/inline_link_smear.h: Changed Params::write
	  to Params::writeXML.

2006-06-11 23:37  edwards

	* lib/meas/inline/smear/inline_link_smear.cc: Bug fix. Need the
	  correct name for the link_smear path object creation.

2006-06-11 23:36  edwards

	* tests/chroma/smear/link_smear/link_smear.out.xml: Updated.

2006-06-11 22:14  tag chroma3-7-1

2006-06-11 22:14  edwards

	* install_scripts/cygwin/config_chroma_parscalar-single.sh: Enabled
	  runner.

2006-06-11 22:13  edwards

	* lib/meas/: hadron/group_baryon_operator_w.cc,
	  hadron/group_baryon_operator_w.h,
	  hadron/simple_baryon_operator_w.cc,
	  hadron/simple_baryon_operator_w.h,
	  inline/smear/inline_link_smear.cc,
	  inline/smear/inline_link_smear.h, sinks/pt_sink_smearing.h,
	  sinks/sh_sink_smearing.h, smear/link_smearing_factory.cc,
	  smear/link_smearing_factory.h, smear/quark_source_sink.h,
	  sources/pt_source_const.cc, sources/pt_source_smearing.h,
	  sources/sh_source_const.cc, sources/sh_source_smearing.h: Removed
	  all use of "linkSmear". Removed link_smearing_factory.cc . This
	  bit of code is problematic with the current qdp++.

2006-06-11 22:10  edwards

	* configure: Induced changes

2006-06-11 22:08  edwards

	* lib/Makefile.am: Removed link_smearing_factory.cc

2006-06-11 22:03  edwards

	* aclocal.m4: Induced changes

2006-06-11 22:02  edwards

	* NEWS: Info on 3.7.1

2006-06-11 22:01  edwards

	* configure.ac: Changed to 3.7.1

2006-06-11 16:28  tag chroma3-7-0

2006-06-11 16:28  edwards

	* lib/actions/ferm/qprop/: prec_dwf_qprop_array_altivec_w.cc,
	  prec_dwf_qprop_array_altivec_w.h, prec_dwf_qprop_array_sse_w.cc,
	  prec_dwf_qprop_array_sse_w.h: Commented out first constructor,
	  now save the EO/Prec linop that is passed and now computes the
	  residual in the code.

2006-06-11 16:22  edwards

	* tests/chroma/hadron/propagator/: prec_dwf.ini.xml,
	  prec_dwf.out.xml: Changed number of retries.

2006-06-11 15:42  edwards

	* NEWS: Info on 3.7.0

2006-06-11 15:39  edwards

	* tests/chroma/hadron/propagator/: prec_dwf.ini.xml,
	  prec_dwf.out.xml: Turned on numRetries=3

2006-06-11 15:11  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc:
	  Compilation fix.

2006-06-11 14:45  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc: Another
	  small compilation fix.

2006-06-11 11:23  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h: Compilation
	  fix (use "A" instead of "A_" for argument).

2006-06-11 02:31  edwards

	* aclocal.m4, configure: Induced changes

2006-06-11 02:30  edwards

	* configure, configure.ac, lib/fermact.h, lib/syssolver.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.h,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/prec_staggered_qprop.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h, lib/io/qprop_io.cc,
	  lib/io/qprop_io.h, lib/meas/hadron/ks_local_loops.cc,
	  lib/meas/inline/hadron/inline_propagator_ferm_w.cc,
	  lib/meas/inline/hadron/inline_propagator_w.cc,
	  lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc,
	  lib/meas/inline/hadron_s/util_compute_singlet_ps.cc,
	  lib/meas/schrfun/sfpcac_w.cc, mainprogs/main/cfgtransf.cc,
	  mainprogs/tests/t_disc_loop_s.cc,
	  mainprogs/tests/t_dwflocality.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_precact_4d.cc, mainprogs/tests/t_precact_5d.cc,
	  mainprogs/tests/t_propagator_fuzz_baryon_s.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_twisted.cc,
	  mainprogs/tests/t_propagator_w.cc, tests/regres.pl,
	  tests/chroma/eig/eigbnds-v1.out.xml,
	  tests/chroma/eig/ritz_Hw-v1.out.xml,
	  tests/chroma/gfix/coulgauge/coulgauge.out.xml,
	  tests/chroma/glue/fuzwilp/fuzwilp.out.xml,
	  tests/chroma/glue/wilslp/wilslp.out.xml,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.ini.xml,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.out.xml,
	  tests/chroma/hadron/building_blocks/bb.ini.xml,
	  tests/chroma/hadron/building_blocks/bb.out.xml,
	  tests/chroma/hadron/make_source/dilute.out.xml,
	  tests/chroma/hadron/make_source/make_source.out.xml,
	  tests/chroma/hadron/make_source/source-deriv.out.xml,
	  tests/chroma/hadron/make_source/source-displace.out.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.ini.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.out.xml,
	  tests/chroma/hadron/mres/mres.ini.xml,
	  tests/chroma/hadron/mres/mres.out.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.dat_0.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.dat_1.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.ini.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.metric.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.out.xml,
	  tests/chroma/hadron/noisy_building_blocks/regres.pl,
	  tests/chroma/hadron/propagator/prec_clover.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover.out.xml,
	  tests/chroma/hadron/propagator/prec_dwf.ini.xml,
	  tests/chroma/hadron/propagator/prec_dwf.out.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/prec_ovext.ini.xml,
	  tests/chroma/hadron/propagator/prec_ovext.out.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.ini.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-smearing.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-smearing.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ferm.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson.out.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.ini.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.out.xml,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.ini.xml,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.ini.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  tests/chroma/hadron/propagator/unprec_clover.ini.xml,
	  tests/chroma/hadron/propagator/unprec_clover.out.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.ini.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.out.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.ini.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.out.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.ini.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.out.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.ini.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.out.xml,
	  tests/chroma/hadron/qqbar/qqbar.ini.xml,
	  tests/chroma/hadron/qqq/qqq.ini.xml,
	  tests/chroma/hadron/qqqNucNuc/qqqNucNuc.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-derivmeson.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-photon.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-photon.out.xml,
	  tests/chroma/hadron/sink_smear/sink-deriv.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-deriv.out.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.out.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.ini.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.out.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.ini.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.out.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.ini.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.out.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll-v1.ini.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll-v2.ini.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll-v3.ini.xml,
	  tests/chroma/hadron/stoch_baryon/create_chroma_xml_small_eo.csh,
	  tests/chroma/hadron/stoch_baryon/stoch_baryon.ini.xml,
	  tests/chroma/hadron/stoch_baryon/stoch_baryon.out.xml,
	  tests/chroma/hadron/stoch_meson/create_chroma_xml_small_eo.csh,
	  tests/chroma/hadron/stoch_meson/stoch_meson.ini.xml,
	  tests/chroma/hadron/stoch_meson/stoch_meson.out.xml,
	  tests/chroma/hadron_s/spectrum_s/spectrum_s.out.xml,
	  tests/chroma/io/nersc_read_obj/nersc_read_obj.out.xml,
	  tests/chroma/io/nersc_write_obj/nersc_write_obj.out.xml,
	  tests/chroma/io/qio_read_obj/qio_read_obj.out.xml,
	  tests/chroma/io/qio_write_obj/qio_write_obj.out.xml,
	  tests/chroma/io/szin_read_obj/szin_read_obj.out.xml,
	  tests/chroma/io/szin_write_obj/szin_write_obj.out.xml,
	  tests/chroma/schrfun/schrfun.ini.xml,
	  tests/chroma/schrfun/schrfun.out.xml,
	  tests/chroma/smear/link_smear/link_smear.out.xml,
	  tests/purgaug/purgaug.ini.xml, tests/purgaug/purgaug.out.xml,
	  tests/purgaug/purgaug.sfnonpt.ini.xml,
	  tests/purgaug/purgaug.sfnonpt.out.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_parwilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_clover.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.out.xml: Change in
	  interface. The quarkProp routines now all take a "numRetries"
	  variable for the number of times to call the qprop routine. The
	  propagator regression tests have all been up to version 10 to
	  read this new variable.  The SystemSolver routines now all return
	  a  SystemSolverResults_t  struct instead of an int of "n_count" .
	  A residual of the unpreconditioned system of equations for the
	  qprop and qpropT is computed.

2006-06-11 00:21  edwards

	* scripts/regenerate.csh: added path

2006-06-11 00:08  edwards

	* scripts/regenerate.csh: Regenerate script

2006-06-11 00:05  edwards

	* tests/: regenerate.csh, chroma/regenerate.csh: Removed.

2006-06-11 00:02  edwards

	* scripts/regenerate.csh: Regeneration script

2006-06-11 00:02  edwards

	* tests/chroma/regenerate.csh: Generate chroma

2006-06-10 23:46  edwards

	* tests/regres.pl: Added more regressions.

2006-06-10 23:46  edwards

	* tests/regenerate.csh: Regenerator script.

2006-06-10 12:38  edwards

	* tests/chroma/glue/wilslp/: wilslp.metric.xml, wilslp.out.xml:
	  Update to match new output format.

2006-06-10 12:37  edwards

	* tests/chroma/glue/wilslp/wilslp.ini.xml: Added t_dir

2006-06-10 12:30  edwards

	* lib/meas/: glue/wilslp.cc, inline/glue/inline_wilslp.cc,
	  inline/glue/inline_wilslp.h: Changed output format of wilslp.

2006-06-10 12:29  edwards

	* lib/meas/inline/smear/: inline_ape_smear.cc, inline_ape_smear.h,
	  inline_hyp_smear.cc, inline_hyp_smear.h: Put in BlkMax and
	  BlkAccu now as params.

2006-06-10 12:28  edwards

	* lib/meas/: sources/pt_source_const.cc, sources/pt_source_const.h,
	  sources/pt_source_smearing.cc, sources/pt_source_smearing.h,
	  sources/sh_source_const.cc, sources/sh_source_const.h,
	  sources/sh_source_smearing.cc, sources/sh_source_smearing.h,
	  sinks/pt_sink_smearing.cc, sinks/pt_sink_smearing.h,
	  sinks/sh_sink_smearing.cc, sinks/sh_sink_smearing.h: Put back in
	  quark_smear_first/last flag.

2006-06-10 12:28  edwards

	* lib/meas/smear/: link_smearing_aggregate.cc,
	  link_smearing_aggregate.h, quark_displacement_aggregate.cc,
	  quark_displacement_aggregate.h, quark_smearing_aggregate.cc,
	  quark_smearing_aggregate.h: Added null XML group function.

2006-06-10 12:26  edwards

	* lib/meas/hadron/hadseqsrc_w.h: Removed obsolete hadseqsrc_w.h

2006-06-10 12:23  edwards

	* tests/chroma/hadron/: make_source/make_source.ini.xml,
	  make_source/make_source.out.xml,
	  make_source/source-displace.ini.xml,
	  make_source/source-displace.out.xml,
	  sink_smear/sink-displace.ini.xml,
	  sink_smear/sink-displace.out.xml,
	  sink_smear/sink_smearing.out.xml: Put back in
	  quark_smear_first/last flag.

2006-06-08 23:14  tag chroma3-6-2

2006-06-08 23:14  edwards

	* aclocal.m4, configure: Induced changes

2006-06-08 23:14  edwards

	* NEWS: Info on 3.6.2

2006-06-08 23:12  edwards

	* configure.ac: Changed to 3.6.2

2006-06-08 23:12  edwards

	* tests/chroma/hadron/mesonspec/mesonspec.out.xml: Updated.

2006-06-07 17:29  bjoo

	* scripts/regres_report_to_html.xsl: Added stylesheet to transform
	  report XML

2006-06-07 16:51  bjoo

	* scripts/: check_regres_runner.pl, create_regres_runner.pl: Script
	  to create a jobsworth of tests and another to check the results

2006-06-06 15:06  kostas

	* lib/actions/ferm/fermacts/poly_cheb_fermact_w.cc: called the
	  constructor that make's the bit reversal ordered lpoly

2006-06-06 15:02  kostas

	* lib/actions/ferm/linop/polynomial_op.h: Added bit reversal
	  ordering into the polynomial operator...

2006-06-04 18:24  edwards

	* tests/chroma/hadron/mres/mres.metric.xml: Bumped up relative
	  error.

2006-06-03 17:10  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Changed to avoid
	  making a copy of the quark propagator.

2006-06-03 11:24  edwards

	* tests/chroma/hadron/mres/mres.metric.xml: Increase tolerance to
	  2.0e-5 . The parscalar-single-gcc4 results seem to differ a
	  smidgeon in the last reported digit causing the xcheck to fail.

2006-06-01 11:10  edwards

	* scripts/run_chroma_xmldiff.pl: Put a /dev/null in the script.
	  This precludes anybody redirecting.

2006-05-30 18:09  bjoo

	* lib/actions/ferm/linop/clover_term_qdp_w.h: Fixed the extra
	  qualification in get clover term. It wasnt the const but the
	  fully qualified function name in the .h file

2006-05-30 17:09  bjoo

	* other_libs/intel_sse_wilson_dslash/src/:
	  parscalar/32bit/dslash/sse_su3dslash_w.c,
	  scalar/32bit/dslash/sse_su3dslash_w.c: Removed two align
	  directives that interfered with strict checking done by GCC4.1.1

2006-05-30 16:05  edwards

	* lib/actions/ferm/linop/: clover_term_base_w.h,
	  clover_term_qdp_w.cc, clover_term_qdp_w.h: Removed const
	  qualifier on return in getCloverCoeff.

2006-05-30 15:56  edwards

	* lib/actions/ferm/linop/: unprec_hamberwu_linop_w.h,
	  unprec_w12_linop_w.h: Small compilation bug fix.

2006-05-26 16:37  edwards

	* tests/chroma/io/qio_write_obj/: qio_write_obj.ini.xml,
	  qio_write_obj.out.xml: Added double precision test.

2006-05-26 01:03  tag chroma3-6-1

2006-05-26 01:03  edwards

	* NEWS: Info on 3.6.1

2006-05-26 01:02  edwards

	* INSTALL.ibm: Obsolete.

2006-05-26 01:00  edwards

	* aclocal.m4, configure: Induced changes

2006-05-26 01:00  edwards

	* configure.ac: Changed to 3.6.1

2006-05-26 00:59  edwards

	* lib/meas/inline/hadron/: inline_mesonspec_w.cc,
	  inline_mesonspec_w.h: Changed ordering of g5*adj(prop_2)*g5 and
	  sink spin insertion.

2006-05-26 00:58  edwards

	* tests/chroma/hadron/mesonspec/mesonspec.out.xml: Updated again.

2006-05-26 00:52  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.out.xml: New version of input and output.

2006-05-25 22:00  tag intel_sse_dslash1-3-6

2006-05-25 22:00  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2006-05-25 21:59  edwards

	* other_libs/intel_sse_wilson_dslash/NEWS: Info on 1.3.6

2006-05-25 21:56  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Small bug fix.
	  In the 64bit SSE wilson dslash there was an call to QMP_wait that
	  didn't check for "total_comm". So, this would fail on
	  parscalar-single.

2006-05-25 17:07  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c:
	  Bug fix. Added missing test of total_comm around a QMP_wait call.

2006-05-25 14:47  edwards

	* tests/chroma/hadron_s/spectrum_s/spectrum_s.out.xml: Updated.

2006-05-24 17:24  tag chroma3-6-0

2006-05-24 17:24  edwards

	* NEWS: Info on 3.6.0

2006-05-24 17:20  tag chroma3-5-1

2006-05-24 17:20  edwards

	* NEWS: Info on 3.5.1

2006-05-24 17:18  edwards

	* configure: Induced changes.

2006-05-24 17:14  edwards

	* aclocal.m4: Induced changes.

2006-05-24 17:13  edwards

	* configure.ac: Changed to 3.6.0

2006-05-24 17:10  edwards

	* lib/Makefile.am: Added xml_group_reader and new spin insertion
	  routines.

2006-05-24 17:09  edwards

	* lib/meas/: hadron/no_spin_insertion.cc,
	  hadron/no_spin_insertion.h, hadron/simple_spin_insertion_w.cc,
	  hadron/simple_spin_insertion_w.h, hadron/spin_insertion.h,
	  hadron/spin_insertion_aggregate.cc,
	  hadron/spin_insertion_aggregate.h,
	  hadron/spin_insertion_factory.h,
	  inline/hadron/inline_mesonspec_w.cc,
	  inline/hadron/inline_mesonspec_w.h: Overhauled mesonspect to (1)
	  write complex output and (2) use new spin insertions. Now one
	  passes in a list of pairs of quark props along with the
	  source/sink spin insertions to perform and the operation on
	  accumulating onto the target correlation function.

2006-05-24 17:08  edwards

	* lib/meas/smear/: deriv_quark_displacement_w.cc,
	  deriv_quark_displacement_w.h: Added simple nabla, D and B
	  derivatives.

2006-05-24 17:07  edwards

	* lib/io/: xml_group_reader.cc, xml_group_reader.h: Convenience
	  function for snarfing a group and and a type tag.

2006-05-24 17:06  edwards

	* tests/chroma/hadron/mesonspec/mesonspec.metric.xml: Fixed up
	  metric for complex output.

2006-05-24 15:21  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.out.xml: New format.

2006-05-24 12:26  egregory

	* tests/spectrum_s/spectrum_s_reg.xml: removed troublesome rhos
	  from test

2006-05-24 12:25  egregory

	* tests/spectrum_s/spectrum_s_reg_test_output.xml: removed
	  troublesome rhos frmo test

2006-05-24 02:31  kostas

	* lib/actions/ferm/invert/invcg2_array.cc: added reporting of true
	  residual

2006-05-23 14:11  edwards

	* lib/io/enum_io/: enum_plusminus_io.cc, enum_plusminus_io.h: Added
	  plusminus io.

2006-05-23 14:11  edwards

	* lib/Makefile.am: Added enum_plusminus_io.{h,cc}

2006-05-23 12:36  egregory

	* tests/spectrum_s/spectrum_s_reg_test_output.xml: updated test
	  output

2006-05-23 12:35  egregory

	* lib/meas/hadron/pion_sing_s.cc: fixed bug in shift

2006-05-23 12:34  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: made bool
	  do_stoch_conn_corr	  = false the default.
	  ----------------------------------------------------------------------

2006-05-23 12:01  edwards

	* tests/chroma/hadron/stoch_baryon/stoch_baryon.out.xml: Updated
	  output.

2006-05-23 11:54  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: Fix number of
	  pops.

2006-05-23 11:46  edwards

	* tests/chroma/hadron/stoch_baryon/:
	  create_chroma_xml_small_eo.csh, stoch_baryon.ini.xml,
	  stoch_baryon.out.xml: New output format.

2006-05-23 00:39  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc: Use single
	  or double precision depending on how qdp is compiled.

2006-05-22 10:45  edwards

	* install_scripts/jlab/config_chroma_scalar.sh: Modified for new
	  jlab use

2006-05-21 00:49  edwards

	* lib/meas/hadron/group_baryon_operator_w.cc: Improved reading of a
	  complex from the coefficients file.

2006-05-21 00:40  edwards

	* lib/meas/: hadron/group_baryon_operator_w.cc,
	  hadron/group_baryon_operator_w.h,
	  hadron/simple_baryon_operator_w.cc,
	  hadron/simple_baryon_operator_w.h,
	  inline/hadron/inline_stoch_baryon_w.cc,
	  inline/hadron/inline_stoch_baryon_w.h: New baryon_operator
	  format. Reads smearing within operator tags. The inline version
	  no longer handles any smearing.

2006-05-21 00:39  edwards

	* lib/Makefile.am: Added no link_smearing

2006-05-21 00:38  edwards

	* tests/chroma/hadron/stoch_baryon/:
	  create_chroma_xml_small_eo.csh, stoch_baryon.ini.xml,
	  stoch_baryon.out.xml: New baryon_operator format.

2006-05-20 00:23  edwards

	* lib/meas/sources/: sh_source_const.cc, sh_source_const.h,
	  sh_source_smearing.cc, sh_source_smearing.h: Reverted to version
	  2 and removed quark_smear_first/last flag.

2006-05-20 00:23  edwards

	* lib/meas/sinks/: sh_sink_smearing.cc, sh_sink_smearing.h:
	  Reverted to version 2 and removed quark_smear_last/first flag.

2006-05-20 00:22  edwards

	* tests/chroma/hadron/make_source/: make_source.ini.xml,
	  make_source.out.xml, source-displace.ini.xml,
	  source-displace.out.xml: Reverted source to version 2.

2006-05-20 00:22  edwards

	* tests/chroma/hadron/sink_smear/: sink-displace.ini.xml,
	  sink-displace.out.xml: Reverted source & sink versions to 2.

2006-05-19 17:34  edwards

	* lib/meas/smear/: link_smearing_aggregate.cc, no_link_smearing.cc,
	  no_link_smearing.h: Added no link smearing

2006-05-19 11:10  edwards

	* configure: Induced changes.

2006-05-19 11:05  edwards

	* lib/meas/smear/: no_quark_smearing.cc, no_quark_smearing.h,
	  quark_smearing_aggregate.cc: Added NoQuarkSmearing

2006-05-19 11:02  edwards

	* aclocal.m4: Induced changes.

2006-05-19 10:57  edwards

	* configure.ac: Bumped to 3.5.1

2006-05-19 10:56  edwards

	* lib/Makefile.am: Added missing include files.

2006-05-18 22:22  edwards

	* install_scripts/cygwin/config_chroma_scalar.sh: Updated for test
	  runner.

2006-05-18 21:17  tag chroma3-5-0

2006-05-18 21:17  edwards

	* aclocal.m4, configure: Induced changes.

2006-05-18 21:16  edwards

	* NEWS: Info on 3.5.0

2006-05-18 21:14  edwards

	* configure.ac: Changed to 3.5.0

2006-05-18 17:15  tag intel_sse_dslash1-3-5

2006-05-18 17:15  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/:
	  32bit/dslash/sse_su3dslash_w.c, 64bit/dslash/sse_su3dslash_w.c:
	  Even more loosening of restrictions on valid subgrid sizes. The
	  code only expects that there be at least 2 subgrid sites after
	  checkerboarding. There apparently is another restriction that the
	  original problem size can't be 1 in any direction.

2006-05-18 17:10  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2006-05-18 17:10  edwards

	* other_libs/intel_sse_wilson_dslash/NEWS: Info on 1.3.5

2006-05-18 17:08  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Changed to 1.3.5

2006-05-18 14:32  kostas

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_spectrumQll.cc,
	  tests/chroma/hadron/spectrumQll/spectrumQll-v1.ini.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll-v2.ini.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll-v3.ini.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll.dat.xml,
	  tests/chroma/hadron/spectrumQll/spectrumQll.out.xml: fixed up Qll
	  and added sample input and output

2006-05-18 14:28  tag intel_sse_dslash1-3-4

2006-05-18 14:28  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2006-05-18 14:27  edwards

	* other_libs/intel_sse_wilson_dslash/: configure.ac, NEWS: Changed
	  to 1.3.4

2006-05-18 14:23  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2006-05-18 14:22  edwards

	* other_libs/intel_sse_wilson_dslash/NEWS: Info on 1.3.2

2006-05-18 14:21  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Changed to 1.3.2

2006-05-18 14:21  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/:
	  32bit/dslash/sse_su3dslash_w.c, 64bit/dslash/sse_su3dslash_w.c:
	  Loosened restrictions on problem size.

2006-05-18 14:03  kostas

	* aclocal.m4, lib/Makefile.am, lib/meas/hadron/barQll_w.cc,
	  lib/meas/hadron/barQll_w.h, lib/meas/hadron/hadron_w.h,
	  lib/meas/hadron/mesQl_w.cc, lib/meas/hadron/mesQl_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_spectrumQll.cc: fixed up Qll

2006-05-17 16:19  edwards

	* tests/chroma/hadron/stoch_baryon/regres.pl: Fixed to call baryon
	  test.

2006-05-17 16:18  edwards

	* tests/chroma/hadron/seqsource/: regres.pl,
	  seqsource-photon.ini.xml, seqsource-photon.metric.xml,
	  seqsource-photon.out.xml: Added photon.

2006-05-17 15:24  tag chroma3-4-3

2006-05-17 15:24  bjoo

	* configure.ac, configure: Added --ranlib --ar features to config
	  script

2006-05-17 15:15  bjoo

	* chroma-config.in: Added --ranlib --ar features to config script

2006-05-17 11:04  bjoo

	* NEWS: Amended News for Amened MPIRUN RSH runner

2006-05-17 10:56  bjoo

	* scripts/test_runners/mpirun_rsh_runner.sh.in: Hardwired two nodes
	  here

2006-05-17 10:42  bjoo

	* aclocal.m4, NEWS, configure.ac: Induced Changes

2006-05-17 10:42  bjoo

	* configure: v 3.4.2 Configure

2006-05-17 10:35  bjoo

	* scripts/test_runners/trivial_runner.sh.in: Typo in shell
	  invocation

2006-05-17 10:28  bjoo

	* scripts/test_runners/: mpirun_rsh_runner.sh.in,
	  trivial_runner.sh.in: Testcase Runners for mvapich_rsh and
	  trivial

2006-05-16 10:42  edwards

	* docs/notes/: three_point.eps, pion_three_point.eps: Added missing
	  file.

2006-05-15 15:54  edwards

	* lib/meas/hadron/: photon_seqsrc_w.cc, photon_seqsrc_w.h: Added
	  POINT_SPLIT_PHOTON.

2006-05-15 14:44  edwards

	* tests/chroma/hadron/seqsource/seqsource-photon.out.xml: Canonical
	  version.

2006-05-14 23:20  edwards

	* lib/meas/hadron/: group_baryon_operator_w.cc,
	  group_baryon_operator_w.h: Separating off some routines for
	  further generalization.

2006-05-14 15:41  edwards

	* tests/chroma/hadron/stoch_baryon/stoch_baryon.out.xml: More
	  updates.

2006-05-14 15:39  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: Removed more
	  debugging.

2006-05-14 15:38  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: Fixed timing.

2006-05-14 15:34  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: Turned on all 6
	  permutations. Removed debugging.

2006-05-14 15:28  edwards

	* tests/chroma/hadron/stoch_baryon/: stoch_baryon.ini.xml,
	  stoch_baryon.out.xml: Updated.

2006-05-14 15:27  edwards

	* tests/chroma/hadron/stoch_baryon/create_chroma_xml_small_eo.csh:
	  Changed input.

2006-05-14 15:26  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: New debugging.
	  Removed copies of sources and solns.

2006-05-14 15:24  edwards

	* tests/chroma/hadron/stoch_baryon/create_chroma_xml_small_eo.csh:
	  New input.

2006-05-14 15:17  edwards

	* lib/meas/hadron/group_baryon_operator_w.h: Now have a disp_dir
	  and disp_len in coeff struct.

2006-05-14 15:17  edwards

	* lib/meas/hadron/group_baryon_operator_w.cc: Bug fixes. Need to
	  rotate to Dirac basis. Also, had a nasty indexing error on spin
	  -= 1. Not sure array ops are such a nice thing.

2006-05-11 23:42  edwards

	* tests/chroma/hadron/stoch_baryon/:
	  create_chroma_xml_small_eo.csh, stoch_baryon.ini.xml,
	  stoch_baryon.out.xml: Switched to new BaryonOperator input in
	  STOCH_BARYON.

2006-05-11 23:38  edwards

	* lib/meas/: hadron/baryon_operator.cc, hadron/baryon_operator.h,
	  hadron/baryon_operator_aggregate_w.cc,
	  hadron/baryon_operator_aggregate_w.h,
	  hadron/baryon_operator_factory_w.h,
	  hadron/group_baryon_operator_w.cc,
	  hadron/group_baryon_operator_w.h,
	  hadron/simple_baryon_operator_w.cc,
	  hadron/simple_baryon_operator_w.h,
	  inline/hadron/inline_stoch_baryon_w.cc,
	  inline/hadron/inline_stoch_baryon_w.h: New baryon operator
	  support. The stoch_baryon task now calls this thing. Not ready
	  yet - smearing not properly handled.

2006-05-11 23:36  edwards

	* lib/Makefile.am: New baryon operator support.

2006-05-11 18:55  tag chroma3-4-1

2006-05-11 18:55  edwards

	* aclocal.m4, configure: Induced changes.

2006-05-11 18:54  edwards

	* NEWS: Info on 3.4.1.

2006-05-11 18:53  edwards

	* configure.ac: Changed to 3.4.1

2006-05-10 17:59  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: Added a
	  functional baryon_contract routine.

2006-05-10 00:52  tag chroma3-4-0

2006-05-10 00:52  edwards

	* NEWS: Info on 3.4.0

2006-05-10 00:49  edwards

	* tests/chroma/hadron/propagator/: prec_dwf.ini.xml,
	  prec_dwf.out.xml: Turned on obsvP

2006-05-10 00:48  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_w.cc,
	  prec_dwf_fermact_array_w.h, prec_kno_fermact_array_w.cc,
	  prec_kno_fermact_array_w.h, prec_nef_fermact_array_w.cc,
	  prec_nef_fermact_array_w.h, prec_zolo_nef_fermact_array_w.cc,
	  prec_zolo_nef_fermact_array_w.h, unprec_dwf_fermact_array_w.cc,
	  unprec_dwf_fermact_array_w.h, unprec_nef_fermact_array_w.cc,
	  unprec_nef_fermact_array_w.h, unprec_zolo_nef_fermact_array_w.cc,
	  unprec_zolo_nef_fermact_array_w.h: Fixed quarkProp calls to have
	  the bleeping "const" qualifier at the end.  Otherwise, this is
	  considered a "new" func and my overrides are not used.

2006-05-10 00:02  kostas

	* lib/meas/hadron/: mesQl_w.cc, mesQl_w.h: added Ql spectrum

2006-05-09 23:59  kostas

	* lib/meas/hadron/: barQll_w.cc, barQll_w.h: added baryon Qll

2006-05-09 23:58  kostas

	* lib/meas/inline/hadron/: inline_spectrumQll.cc,
	  inline_spectrumQll.h: added inline_spectrumQll

2006-05-09 17:47  edwards

	* lib/meas/inline/hadron/inline_stoch_baryon_w.cc: Fixed writing
	  orderings_size,.

2006-05-09 16:59  edwards

	* tests/chroma/hadron/stoch_baryon/stoch_baryon.out.xml: Removed
	  evenodd

2006-05-09 16:34  edwards

	* aclocal.m4, configure: Induced changes.

2006-05-09 16:33  edwards

	* configure.ac: Changed to version 3.4.0

2006-05-09 16:33  edwards

	* mainprogs/main/: Makefile.am, stoch_meson.cc: Removed stoch_meson
	  main program.

2006-05-09 16:32  edwards

	* lib/Makefile.am: Added inline stoch_meson and inline stoch_baryon

2006-05-09 16:32  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_stoch_baryon_w.cc, inline_stoch_baryon_w.h,
	  inline_stoch_meson_w.cc, inline_stoch_meson_w.h: New stoch_meson
	  and stoch_baryon measurements.

2006-05-09 16:31  edwards

	* tests/: regres.pl, stoch_meson/create_chroma_xml.csh,
	  stoch_meson/create_chroma_xml_eo.csh,
	  stoch_meson/stoch_meson.eo.ini.xml,
	  stoch_meson/stoch_meson.ini.xml, stoch_meson/stoch_meson.out.xml:
	  New chroma regression tests. Removed old stoch_meson main program
	  tests.

2006-05-09 16:29  edwards

	* tests/chroma/hadron/stoch_baryon/:
	  create_chroma_xml_small_eo.csh, regres.pl, stoch_baryon.ini.xml,
	  stoch_baryon.metric.xml, stoch_baryon.out.xml: New regression
	  tests.

2006-05-09 13:47  edwards

	* tests/regres.pl: Added regression test of stoch_meson in chroma.

2006-05-09 13:47  edwards

	* tests/chroma/hadron/stoch_meson/: create_chroma_xml_small_eo.csh,
	  regres.pl, stoch_meson.ini.xml, stoch_meson.metric.xml,
	  stoch_meson.out.xml: New regression tests.

2006-05-09 11:09  tag chroma3-3-0

2006-05-09 11:09  edwards

	* NEWS: Info on 3.3.0

2006-05-09 11:08  edwards

	* configure: Induced changes.

2006-05-09 10:19  edwards

	* tests/chroma/hadron/sink_smear/: sink-displace.ini.xml,
	  sink-displace.out.xml: Changed input version.

2006-05-05 23:09  edwards

	* lib/meas/: sinks/sh_sink_smearing.cc, sources/sh_source_const.cc,
	  sources/sh_source_smearing.cc: Made ordering required. Fixed
	  writers to be v3.

2006-05-05 11:58  edwards

	* tests/chroma/hadron/sink_smear/: sink-displace.ini.xml,
	  sink-displace.out.xml: Updated source and sink smearing for new
	  params.

2006-05-05 01:23  edwards

	* tests/chroma/hadron/make_source/: make_source.ini.xml,
	  make_source.out.xml, source-displace.ini.xml,
	  source-displace.out.xml: Added quark_smear_lastP flag.

2006-05-05 01:22  edwards

	* lib/meas/sources/: sh_source_const.cc, sh_source_smearing.cc,
	  sh_source_smearing.h: Rearranged where quark_smear_lastP is read.
	  Now is optional.

2006-05-05 00:19  edwards

	* lib/meas/: sinks/sh_sink_smearing.cc, sinks/sh_sink_smearing.h,
	  sources/sh_source_const.cc, sources/sh_source_const.h: Added a
	  quark_smear_order flag to determine the order of smearing versus
	  displacement.

2006-05-04 23:10  edwards

	* configure.ac: Changed to 3.3.0

2006-05-04 23:08  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn.ini.xml,
	  bar3ptfn.out.xml: New input and output format.

2006-05-04 23:07  edwards

	* lib/meas/: hadron/formfac_w.cc, hadron/formfac_w.h,
	  inline/hadron/inline_bar3ptfn_w.cc,
	  inline/hadron/inline_bar3ptfn_w.h: Added an extra gamma_insertion
	  similar to building_blocks.

2006-05-02 10:13  edwards

	* README: Updated.

2006-05-01 16:19  kostas

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc: fixed
	  an other typo due to porting in chroma 3.0

2006-05-01 12:06  kostas

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc: added
	  timing and status checking in the altivec inverter

2006-05-01 11:27  kostas

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h: fixed
	  altivec bugs introduced in vs 3.0

2006-04-26 23:08  tag chroma3-2-1

2006-04-26 23:08  edwards

	* NEWS: Info on 3.2.1

2006-04-26 22:36  edwards

	* mainprogs/main/stoch_meson.cc: Added some comments.

2006-04-26 22:35  edwards

	* lib/meas/inline/io/: inline_io_aggregate.cc,
	  inline_nersc_read_obj.cc, inline_nersc_read_obj.h,
	  inline_snarf_obj.cc, inline_snarf_obj.h, io.h: Removed snarf -
	  it's been superceded. Added nersc reader.

2006-04-26 22:34  edwards

	* lib/Makefile.am: Added nersc reader task.

2006-04-26 22:31  edwards

	* aclocal.m4, configure: Induced changes.

2006-04-26 22:29  edwards

	* tests/regres.pl: Added more regression tests.

2006-04-26 22:28  edwards

	* configure.ac: Changed to 3.2.1

2006-04-26 22:28  edwards

	* tests/chroma/io/nersc_read_obj/: nersc_read_obj.ini.xml,
	  nersc_read_obj.metric.xml, nersc_read_obj.out.xml, regres.pl:
	  More regression tests.

2006-04-26 21:53  edwards

	* tests/chroma/io/: nersc_write_obj/nersc_write_obj.metric.xml,
	  nersc_write_obj/regres.pl,
	  qio_write_obj/qio_write_obj.metric.xml, qio_write_obj/regres.pl,
	  szin_write_obj/regres.pl,
	  szin_write_obj/szin_write_obj.metric.xml: New regression tests

2006-04-26 16:55  edwards

	* tests/chroma/io/: nersc_write_obj/nersc_write_obj.ini.xml,
	  nersc_write_obj/nersc_write_obj.out.xml,
	  qio_read_obj/qio_read_obj.out.xml,
	  qio_write_obj/qio_write_obj.ini.xml,
	  qio_write_obj/qio_write_obj.out.xml,
	  szin_read_obj/szin_read_obj.ini.xml,
	  szin_read_obj/szin_read_obj.out.xml,
	  szin_write_obj/szin_write_obj.ini.xml,
	  szin_write_obj/szin_write_obj.out.xml: Removed SNARF

2006-04-26 16:48  edwards

	* tests/chroma/io/qio_read_obj/: qio_read_obj.ini.xml,
	  qio_read_obj.out.xml: Bypass snarf.

2006-04-25 23:45  edwards

	* tests/chroma/schrfun/schrfun.out.xml: New version. Yuk, it costs
	  twice as much, but I need the generality of arbitrary direction
	  support.

2006-04-25 23:42  edwards

	* lib/meas/sources/walfil_w.cc: Amounts to only indenting the code.

2006-04-25 23:41  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Removed j_decay limitation. Code
	  now solves for *all* spin components thus twice the needed work.
	  However, it now uses a general spin projector thus allowing it to
	  *easily* work for arbitrary directions.  That's life.

2006-04-25 23:36  edwards

	* lib/meas/schrfun/sfpcac_w.cc: More cleanups. Still same cost.
	  Checked the code works by comparing old to new output.

2006-04-25 22:55  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Changed some of the really
	  confusing usages of quark_prop_f and quark_prop_b to be now the
	  same as the current quark_propagator.

2006-04-25 22:06  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Some small cleanups.

2006-04-25 16:28  edwards

	* mainprogs/main/Makefile.am: Moved stoch_meson to bin programs

2006-04-25 16:27  edwards

	* tests/stoch_meson/create_chroma_xml.csh: Added missing gauge_id

2006-04-25 16:26  edwards

	* aclocal.m4, configure: Induced changes.

2006-04-25 16:26  edwards

	* tests/stoch_meson/stoch_meson.ini.xml: Updated.

2006-04-25 16:24  edwards

	* lib/meas/sources/: pt_source_const.cc, pt_source_smearing.cc,
	  pt_source_smearing.h, sh_source_const.cc, sh_source_smearing.cc,
	  sh_source_smearing.h: Updated smearing routines to be version 2.
	  Made the writers also write version 2.

2006-04-22 17:35  edwards

	* mainprogs/main/purgaug.cc: Rearranged output file names.

2006-04-22 16:52  edwards

	* lib/meas/inline/glue/inline_polylp.cc: Removed debugging output.

2006-04-18 23:35  tag chroma3-2-0

2006-04-18 23:35  edwards

	* lib/meas/inline/io/default_gauge_field.cc: Removed debugging
	  output.

2006-04-18 23:34  edwards

	* lib/meas/inline/glue/inline_plaquette.cc: Removed debugging
	  comment.

2006-04-18 23:32  edwards

	* mainprogs/main/purgaug.cc: Toughened error handling on input xml.

2006-04-18 23:00  edwards

	* tests/regres.pl: More regression tests.

2006-04-18 22:59  edwards

	* tests/chroma/schrfun/: regres.pl, schrfun.metric.xml,
	  schrfun.out.xml: New regression tests.

2006-04-18 22:37  edwards

	* aclocal.m4, configure: Induced changes.

2006-04-18 22:36  edwards

	* tests/purgaug/: purgaug.sfnonpt.ini.xml,
	  purgaug.sfnonpt.metric.xml, purgaug.sfnonpt.out.xml: New tests.

2006-04-18 22:36  edwards

	* tests/purgaug/regres.pl: More tests

2006-04-18 22:31  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.out.xml: Switched to
	  using gauge action.

2006-04-18 22:30  edwards

	* mainprogs/main/purgaug.cc: Switch to using a proper gauge action
	  factory method. Still is forced to be the WilsonGaugeAct.
	  However, now a gaugeact is actually used - wasn't before.

2006-04-18 22:29  edwards

	* lib/actions/gauge/gaugeacts/: lw_tree_gaugeact.cc,
	  lw_tree_gaugeact.h, plaq_gaugeact.cc, plaq_gaugeact.h,
	  rect_gaugeact.h, wilson_gaugeact.cc: Changed to using a param
	  struct. Now the plaq_gaugact properly supports anisotropy, but
	  the LW does **NOT** properly support aniso.

2006-04-18 22:28  edwards

	* lib/update/molecdyn/monomial/gauge_monomial.cc: Minutae.

2006-04-18 22:28  edwards

	* lib/update/heatbath/: heatbath.h, su3_hb_sweep.cc,
	  su3_hb_sweep.h, u_staple.cc, u_staple.h: Removed su3_hb_sweep and
	  u_staple

2006-04-18 22:28  edwards

	* lib/update/heatbath/: mciter.cc, mciter.h: Switched to using
	  WilsonGaugeAct.

2006-04-18 22:27  edwards

	* lib/Makefile.am: Removed u_staple.{h,cc} and su3_hb_sweep.{h,cc}.
	  The functionality of u_staple has been moved to  plaq_gaugact.cc

2006-04-18 22:26  edwards

	* lib/io/aniso_io.cc: Changed to if the read anisoP is false, it
	  resets the struct to its default state (constructor).

2006-04-18 22:24  edwards

	* tests/t_leapfrog/: regres.pl, t_leapfrog.lw.sfnonpt.ini.xml,
	  t_leapfrog.lw.sfnonpt.metric.xml, t_leapfrog.lw.sfnonpt.out.xml,
	  t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_dwf.out.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.ini.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.out.xml,
	  t_leapfrog.prec_wilson.ini.xml, t_leapfrog.prec_wilson.out.xml:
	  Updated regression tests.

2006-04-18 13:22  edwards

	* NEWS: Infon on 3.2.0

2006-04-18 13:20  edwards

	* configure.ac: Changed to 3.2.0

2006-04-17 10:17  bjoo

	* install_scripts/QCDOC/ED_qcdocfe/: README, make_all.sh,
	  make_functions.sh: Recent QCDOC build scripts

2006-04-15 23:38  edwards

	* README: Small change.

2006-04-15 23:34  edwards

	* tests/:
	  multi_propagator/multi_propagator_zolo4_v5.linux-scalar-intel.xml,
	  multi_propagator/multi_propagator_zolo4_v5.xml.ini,
	  multi_propagator_comp/collect_multi_propcomp_szinev.linux-scalar-intel.xml,
	  multi_propagator_comp/collect_propcomp.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_c0.xml.ini,
	  multi_propagator_comp/multi_propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_c1.xml.ini,
	  multi_propagator_comp/multi_propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_c2.xml.ini,
	  multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.xml.ini,
	  multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.xml.ini,
	  multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.linux-scalar-intel.xml,
	  multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.xml.ini,
	  multi_propagator_comp/run.sh,
	  multi_propagator_comp/run_szinev.sh,
	  propagator_comp/propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  propagator_comp/propagator_comp_zolo4_c0.xml.ini,
	  propagator_comp/propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  propagator_comp/propagator_comp_zolo4_c1.xml.ini,
	  propagator_comp/propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  propagator_comp/propagator_comp_zolo4_c2.xml.ini,
	  propagator_comp/propagator_comp_zolo4_szinev_c0.xml.ini,
	  propagator_comp/propagator_comp_zolo5_c0.linux-scalar-intel.xml,
	  propagator_comp/propagator_comp_zolo5_c0.xml.ini,
	  propagator_comp/propagator_comp_zolo5_c1.linux-scalar-intel.xml,
	  propagator_comp/propagator_comp_zolo5_c1.xml.ini,
	  propagator_comp/propagator_comp_zolo5_c2.linux-scalar-intel.xml,
	  propagator_comp/propagator_comp_zolo5_c2.xml.ini,
	  propagator_comp/propagator_comp_zolo5_szinev_c0.xml.ini,
	  propagator_comp/run_zolo4.sh, propagator_comp/run_zolo5.sh:
	  Cleaned out.

2006-04-15 23:29  edwards

	* tests/: m_res4d/mres4_tanh.xml.ini,
	  m_res4d/mres4_zolo_nef.xml.ini,
	  m_res4d/prop_CONTFRAC_BORICI.xml.ini,
	  m_res4d/prop_NEF_BORICI.linux-scalar-intel.xml,
	  m_res4d/prop_NEF_BORICI.xml.ini,
	  m_res4d/t_mres_4d.linux-scalar-intel.xml,
	  propagator_w/INPUT_W.xml, propagator_w/t_propagator_w.xml,
	  propagator_w/t_propagator_w_METRIC.xml: Removed.

2006-04-15 23:21  tag chroma3-1-1

2006-04-15 23:21  edwards

	* aclocal.m4, configure: Induced changes.

2006-04-15 23:19  edwards

	* configure.ac: Fixed run command.

2006-04-15 23:07  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Changed normalization.

2006-04-15 23:06  edwards

	* lib/: io/enum_io/enum_cfgtype_io.cc,
	  io/enum_io/enum_cfgtype_io.h, util/gauge/gauge_startup.cc: Added
	  CLASSICAL_SF

2006-04-15 00:01  edwards

	* install_scripts/jlab/config_chroma_scalar.sh: Install paths are
	  changing

2006-04-14 23:59  edwards

	* NEWS: Info on 3.1.1

2006-04-14 23:58  edwards

	* configure: Induced change.

2006-04-14 23:57  edwards

	* configure.ac: Added writing a RUN command for make xcheck

2006-04-14 23:56  edwards

	* aclocal.m4: Induced changes.

2006-04-14 23:55  edwards

	* Makefile.am: Added the run script to xcheck

2006-04-14 23:54  edwards

	* scripts/run_chroma_xmldiff.pl: Now uses a run script

2006-04-14 14:44  edwards

	* tests/regres.pl: Added bar3ptfn

2006-04-14 14:43  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn.metric.xml,
	  bar3ptfn.out.xml, regres.pl: New regression tests.

2006-04-14 11:18  edwards

	* tests/regres.pl: Rearranged order of tests

2006-04-14 11:17  edwards

	* tests/regres.pl: New regression tests.

2006-04-13 15:25  edwards

	* tests/chroma/io/: qio_read_obj/qio_read_obj.ini.xml,
	  qio_read_obj/qio_read_obj.metric.xml,
	  qio_read_obj/qio_read_obj.out.xml, qio_read_obj/regres.pl,
	  szin_read_obj/regres.pl, szin_read_obj/szin_read_obj.ini.xml,
	  szin_read_obj/szin_read_obj.metric.xml,
	  szin_read_obj/szin_read_obj.out.xml: More regression tests.

2006-04-13 11:07  edwards

	* tests/chroma/schrfun/: schrfun.ini.xml, schrfun.out.xml:
	  Normalization changes.

2006-04-12 12:50  edwards

	* tests/chroma/schrfun/: schrfun.ini.xml, schrfun.out.xml: Appears
	  to work

2006-04-11 21:28  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Bug fixes.

2006-04-11 13:24  edwards

	* lib/actions/gauge/gaugebcs/schr_gaugebc_params.cc: Added missing
	  default constructor.

2006-04-11 12:25  tag chroma3-1-0

2006-04-11 12:25  edwards

	* aclocal.m4, configure: Induced changes.

2006-04-11 00:18  edwards

	* NEWS, lib/meas/inline/eig/inline_eigbnds.cc,
	  lib/meas/inline/eig/inline_ritz_H_w.cc,
	  lib/meas/inline/gfix/inline_coulgauge.cc,
	  lib/meas/inline/glue/inline_fuzwilp.cc,
	  lib/meas/inline/glue/inline_fuzwilp.h,
	  lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_polylp.cc,
	  lib/meas/inline/glue/inline_wilslp.cc,
	  lib/meas/inline/glue/inline_wilslp.h,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_hadspec_w.cc,
	  lib/meas/inline/hadron/inline_make_source_ferm_w.cc,
	  lib/meas/inline/hadron/inline_make_source_w.cc,
	  lib/meas/inline/hadron/inline_mesonspec_w.cc,
	  lib/meas/inline/hadron/inline_mres_w.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/hadron/inline_multipole_w.cc,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_propagator_ferm_w.cc,
	  lib/meas/inline/hadron/inline_propagator_w.cc,
	  lib/meas/inline/hadron/inline_qqbar_w.cc,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.cc,
	  lib/meas/inline/hadron/inline_qqq_w.cc,
	  lib/meas/inline/hadron/inline_seqsource_w.cc,
	  lib/meas/inline/hadron/inline_sink_smear_w.cc,
	  lib/meas/inline/hadron/inline_spectrumOct_w.cc,
	  lib/meas/inline/hadron/inline_spectrum_w.cc,
	  lib/meas/inline/hadron_s/inline_spectrum_s.cc,
	  lib/meas/inline/io/default_gauge_field.cc,
	  lib/meas/inline/io/default_gauge_field.h,
	  lib/meas/inline/smear/inline_ape_smear.cc,
	  lib/meas/inline/smear/inline_hyp_smear.cc,
	  lib/meas/inline/smear/inline_link_smear.cc,
	  lib/meas/inline/smear/inline_stout_smear.cc,
	  tests/chroma/eig/eigbnds-v1.ini.xml,
	  tests/chroma/eig/ritz_Hw-v1.ini.xml,
	  tests/chroma/eig/ritz_Hw-v1.out.xml,
	  tests/chroma/gfix/coulgauge/coulgauge.ini.xml,
	  tests/chroma/gfix/coulgauge/coulgauge.out.xml,
	  tests/chroma/glue/fuzwilp/fuzwilp.ini.xml,
	  tests/chroma/glue/fuzwilp/fuzwilp.out.xml,
	  tests/chroma/glue/wilslp/wilslp.ini.xml,
	  tests/chroma/glue/wilslp/wilslp.out.xml,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.ini.xml,
	  tests/chroma/hadron/building_blocks/bb.ini.xml,
	  tests/chroma/hadron/building_blocks/bb.out.xml,
	  tests/chroma/hadron/make_source/dilute.ini.xml,
	  tests/chroma/hadron/make_source/dilute.out.xml,
	  tests/chroma/hadron/make_source/make_source.ini.xml,
	  tests/chroma/hadron/make_source/make_source.out.xml,
	  tests/chroma/hadron/make_source/source-deriv.ini.xml,
	  tests/chroma/hadron/make_source/source-deriv.out.xml,
	  tests/chroma/hadron/make_source/source-displace.ini.xml,
	  tests/chroma/hadron/make_source/source-displace.out.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.ini.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.out.xml,
	  tests/chroma/hadron/mres/mres.ini.xml,
	  tests/chroma/hadron/mres/mres.out.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover.out.xml,
	  tests/chroma/hadron/propagator/prec_dwf.ini.xml,
	  tests/chroma/hadron/propagator/prec_dwf.out.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/prec_ovext.ini.xml,
	  tests/chroma/hadron/propagator/prec_ovext.out.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.ini.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-smearing.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ferm.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson.out.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.ini.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.out.xml,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.ini.xml,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.ini.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  tests/chroma/hadron/propagator/unprec_clover.ini.xml,
	  tests/chroma/hadron/propagator/unprec_clover.out.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.ini.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.out.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.ini.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.out.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.ini.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.out.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.ini.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.out.xml,
	  tests/chroma/hadron/qqbar/qqbar.ini.xml,
	  tests/chroma/hadron/qqq/qqq.ini.xml,
	  tests/chroma/hadron/qqqNucNuc/qqqNucNuc.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-derivmeson.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-photon.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-deriv.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-deriv.out.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.out.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.ini.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.out.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.ini.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.out.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.ini.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.out.xml,
	  tests/chroma/hadron_s/spectrum_s/spectrum_s.ini.xml,
	  tests/chroma/hadron_s/spectrum_s/spectrum_s.out.xml,
	  tests/chroma/smear/ape_smear/ape_smear_v2.ini.xml,
	  tests/chroma/smear/hyp_smear/hyp_smear_v4.ini.xml,
	  tests/chroma/smear/link_smear/link_smear.ini.xml,
	  tests/chroma/smear/link_smear/link_smear.out.xml,
	  tests/chroma/smear/stout_smear/stout_smear_v2.ini.xml,
	  tests/hmc/hmc.prec_wilson.ini.xml,
	  tests/hmc/hmc.prec_wilson.out.xml, tests/purgaug/purgaug.ini.xml,
	  tests/purgaug/purgaug.out.xml,
	  tests/spectrum_s/spectrum_s_reg.xml,
	  tests/spectrum_s/spectrum_s_reg_test_output.xml: Changed default
	  behavior of all inlines to now require an explicit
	  "NamedObject/gauge_id"  to be specified. No longer is there a
	  default gauge field implicitly assumed.

2006-04-11 00:16  edwards

	* lib/meas/schrfun/sfpcac_w.cc: Small cleanup of output.

2006-04-10 23:02  edwards

	* lib/actions/ferm/qprop/prec_fermact_qprop_array.cc: Removed
	  debugging.

2006-04-10 20:42  edwards

	* tests/chroma/schrfun/: schrfun.ini.xml, schrfun.out.xml: Tests
	  not quite ready.

2006-04-10 20:40  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_2flav_clover.sfnonpt.ini.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.out.xml: Shortened test.

2006-04-10 19:48  edwards

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_2flav_clover.sfnonpt.ini.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.out.xml: Updated and fixed
	  name of SF regression test

2006-04-10 17:23  edwards

	* configure, aclocal.m4: Induced changes.

2006-04-10 17:22  edwards

	* configure.ac: Changed to 3.1.0

2006-04-10 17:22  edwards

	* lib/Makefile.am: Added schroedinger code.

2006-04-10 17:21  edwards

	* lib/actions/gauge/gaugebcs/schr_sf_gaugebc.cc: Removed ifdef'd
	  code

2006-04-10 17:21  edwards

	* lib/actions/ferm/fermbcs/: schr_chromomag_fermbc_w.h,
	  schr_coupling_fermbc_w.h, schr_dirich_fermbc_w.h,
	  schr_nonpert_fermbc_w.h, schr_sf_fermbc_w.cc, schr_sf_fermbc_w.h,
	  schr_triv_fermbc_w.h, schroedinger_fermbc_w.h: Added some more
	  functions.

2006-04-10 17:20  edwards

	* lib/actions/ferm/fermacts/clover_fermact_params_w.cc: Added some
	  spaces.

2006-04-10 17:18  edwards

	* lib/meas/schrfun/: schrfun.h, sfcurcor_w.cc, sfcurcor_w.h,
	  sfpcac_w.cc, sfpcac_w.h: New measurements.

2006-04-10 17:17  edwards

	* lib/meas/inline/: inline_aggregate.cc,
	  schrfun/inline_schrfun_aggregate.cc,
	  schrfun/inline_schrfun_aggregate.h, schrfun/inline_sfpcac_w.cc,
	  schrfun/inline_sfpcac_w.h, schrfun/schrfun.h: Added schroedinger
	  functional measurements

2006-04-10 17:16  edwards

	* lib/meas/inline/hadron/inline_polar_source_w.cc: Start of
	  polarizability

2006-04-10 17:16  edwards

	* lib/meas/inline/hadron/: inline_propagator_w.cc,
	  inline_propagator_w.h: Removed some dangling ";"

2006-04-10 17:14  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Cleaned up

2006-04-10 17:06  edwards

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_2flav_clover.sfnonpt.ini.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.metric.xml,
	  t_leapfrog.prec_2flav_clover.sfnonpt.out.xml: Added new sf
	  nonpert test.

2006-04-06 16:14  edwards

	* lib/Makefile.am: Added gamma insertion/displacement.

2006-04-06 16:14  edwards

	* lib/meas/smear/: gamma_displacement_w.cc, gamma_displacement_w.h,
	  quark_displacement_aggregate.cc: Added gamma type of
	  insertion/displacement.

2006-04-05 11:30  tag chroma3-0-1

2006-04-05 11:30  edwards

	* lib/actions/ferm/linop/lwldslash_array_pab_w.cc: Added missing
	  empty constructor (which really is empty).

2006-04-04 16:29  edwards

	* aclocal.m4, configure: Induced changes.

2006-04-04 16:29  edwards

	* NEWS: Info on 3.0.1

2006-04-04 16:28  edwards

	* configure.ac: Changed to 3.0.1

2006-04-04 16:25  edwards

	* lib/actions/ferm/linop/lwldslash_w_pab.cc: Fixed typo. Changed a
	  "u_" to "state->getLinks()".

2006-04-04 11:29  edwards

	* lib/actions/ferm/linop/lwldslash_array_pab_w.h: Added missing
	  getFermBC and fbc !!

2006-04-04 11:24  edwards

	* lib/Makefile.am: Added missing create_state.h

2006-04-03 13:06  edwards

	* lib/Makefile.am: Added missing boundcond.h

2006-04-03 13:03  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h: Fix. Had
	  missing "Array" on EvenOddPrecConstDetLinOp.

2006-04-03 12:58  edwards

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_array_pab_w.h, lwldslash_array_sse_w.cc,
	  lwldslash_array_w.cc: Added missing FermState inits to pab
	  version. Tried to make all these codes look more alike.

2006-04-03 02:07  tag chroma3-0-0

2006-04-03 02:07  edwards

	* mainprogs/tests/t_dwflocality.cc: Fixed to use SystemSolverArray.

2006-04-03 00:58  edwards

	* AUTHORS, COPYING, INSTALL, INSTALL.ibm, Makefile.am, NEWS,
	  README, TODO, acinclude.m4, chroma-config.in, configure,
	  PBS/spectrum/README, PBS/spectrum/bin/parse_baryons.pl,
	  PBS/spectrum/bin/parse_qqq.pl, PBS/spectrum/bin/parse_qs.pl,
	  PBS/spectrum/lib/Parse_groups.pm,
	  PBS/spectrum/scripts/create_pbs.pl,
	  PBS/spectrum/scripts/create_pbs.pl-template,
	  PBS/spectrum/scripts/parse_qqq.pl,
	  PBS/spectrum/scripts/parse_qs.pl,
	  PBS/spectrum/scripts/run_complete_job.pl,
	  PBS/spectrum/scripts/run_complete_job.sh,
	  PBS/spectrum/scripts/run_qqq.sh,
	  PBS/spectrum/scripts/run_qqq_spectrum.sh,
	  PBS/spectrum/scripts/smear_tune_submit.sh, config/config.guess,
	  config/config.sub, config/depcomp, config/install-sh,
	  config/missing, config/mkinstalldirs, docs/Makefile.am,
	  docs/chromadoc, docs/chromadoc.in, docs/faq.txt, docs/manual.tex,
	  docs/tutorial.html, docs/notes/anisoHQ.tex,
	  docs/notes/baryon_3pt.tex, docs/notes/chiral.tex,
	  docs/notes/chroma_gamma_matrices.tex, docs/notes/deltanotes.tex,
	  docs/notes/force.tex, docs/notes/gamma_conventions.tex,
	  docs/notes/hmc.tex, docs/notes/meson_corr_construct.tex,
	  docs/notes/meson_sequential_source.tex, docs/notes/multicg.tex,
	  docs/notes/o3_to_u1.tex, docs/notes/overlap_5dim.tex,
	  docs/notes/overlap_proj_hmc.tex, docs/notes/pinotes_v2.tex,
	  docs/notes/rossi_basis_v2.tex, docs/notes/trunc_ov_5d.tex,
	  install_scripts/LIVERPOOL/Makefile_link,
	  install_scripts/LIVERPOOL/get_chroma.csh,
	  install_scripts/LIVERPOOL/install_chroma.sh,
	  install_scripts/NERSC/configure_chroma.sh,
	  install_scripts/QCDOC/CU_qcdochost0/README,
	  install_scripts/QCDOC/CU_qcdochost0/configure_chroma.sh,
	  install_scripts/QCDOC/CU_qcdochost0/configure_chroma_no_pab_dslash.sh,
	  install_scripts/cygwin/config_chroma_parscalar-single.sh,
	  install_scripts/cygwin/config_chroma_scalar.sh,
	  install_scripts/jlab/build.csh,
	  install_scripts/jlab/build2m-intel.csh,
	  install_scripts/jlab/build2m.csh,
	  install_scripts/jlab/build3g.csh,
	  install_scripts/jlab/build_some.csh,
	  install_scripts/jlab/build_some_k2.6.csh,
	  install_scripts/jlab/config_chroma_parscalar-gigE-double.sh,
	  install_scripts/jlab/config_chroma_parscalar-gigE.sh,
	  install_scripts/jlab/config_chroma_parscalar-gm-double.sh,
	  install_scripts/jlab/config_chroma_parscalar-gm.sh,
	  install_scripts/jlab/config_chroma_parscalar-single.sh,
	  install_scripts/jlab/config_chroma_scalar.sh,
	  install_scripts/jlab/install_some.csh,
	  install_scripts/jlab/install_some_all.csh, lib/boundcond.h,
	  lib/chroma.h, lib/chroma_config.h,
	  lib/chroma_config_internal.h.in, lib/chromabase.h,
	  lib/chromainc.h, lib/common_declarations.h, lib/create_state.h,
	  lib/eo_prec_linop.h, lib/fermact.h, lib/fermbc.h, lib/funcmap.h,
	  lib/gaugeact.h, lib/gaugebc.h, lib/handle.h, lib/invtype.h,
	  lib/lib.h, lib/linearop.h, lib/lmdagm.h, lib/named_obj.h,
	  lib/objfactory.h, lib/objfunctor.h, lib/polyfermact.h,
	  lib/polylinop.h, lib/prec_constdet_linop.h,
	  lib/prec_logdet_linop.h, lib/primitives.h, lib/singleton.h,
	  lib/state.h, lib/syssolver.h, lib/tpreclinop.h, lib/typeinfo.h,
	  lib/typelist.h, lib/typemanip.h, lib/typetraits.h,
	  lib/actions/actions.h, lib/actions/boson/boson.h,
	  lib/actions/boson/operator/klein_gord.cc,
	  lib/actions/boson/operator/klein_gord.h, lib/actions/ferm/ferm.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/bigfloat.h,
	  lib/actions/ferm/fermacts/clover_fermact_params_w.cc,
	  lib/actions/ferm/fermacts/clover_fermact_params_w.h,
	  lib/actions/ferm/fermacts/eigen_state.h,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_s.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_s.h,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_aggregate_w.h,
	  lib/actions/ferm/fermacts/ferm_createstate_factory_s.h,
	  lib/actions/ferm/fermacts/ferm_createstate_factory_w.h,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_s.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_s.h,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_w.cc,
	  lib/actions/ferm/fermacts/ferm_createstate_reader_w.h,
	  lib/actions/ferm/fermacts/fermact_factory_w.h,
	  lib/actions/ferm/fermacts/fermacts.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.h,
	  lib/actions/ferm/fermacts/fermacts_s.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/overlap_state.cc,
	  lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.h,
	  lib/actions/ferm/fermacts/ovext_constant_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_constant_strategy.h,
	  lib/actions/ferm/fermacts/ovext_neuberger_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_neuberger_strategy.h,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy.h,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.cc,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/periodic_fermstate.h,
	  lib/actions/ferm/fermacts/periodic_fermstate_s.cc,
	  lib/actions/ferm/fermacts/periodic_fermstate_s.h,
	  lib/actions/ferm/fermacts/periodic_fermstate_w.cc,
	  lib/actions/ferm/fermacts/periodic_fermstate_w.h,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.cc,
	  lib/actions/ferm/fermacts/poly_cheb_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_stout_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_stout_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_stout_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_stout_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/remez.h,
	  lib/actions/ferm/fermacts/remez_coeff.h,
	  lib/actions/ferm/fermacts/remez_gmp.cc,
	  lib/actions/ferm/fermacts/remez_gmp.h,
	  lib/actions/ferm/fermacts/remez_stub.h,
	  lib/actions/ferm/fermacts/simple_fermstate.h,
	  lib/actions/ferm/fermacts/simple_fermstate_s.cc,
	  lib/actions/ferm/fermacts/simple_fermstate_s.h,
	  lib/actions/ferm/fermacts/simple_fermstate_w.cc,
	  lib/actions/ferm/fermacts/simple_fermstate_w.h,
	  lib/actions/ferm/fermacts/stag_fermact_s.cc,
	  lib/actions/ferm/fermacts/stag_fermact_s.h,
	  lib/actions/ferm/fermacts/stout_fermact_params.cc,
	  lib/actions/ferm/fermacts/stout_fermact_params.h,
	  lib/actions/ferm/fermacts/stout_state.cc,
	  lib/actions/ferm/fermacts/stout_state.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_hamberwu_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_w12_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_w12_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/wilson_fermact_params_w.cc,
	  lib/actions/ferm/fermacts/wilson_fermact_params_w.h,
	  lib/actions/ferm/fermacts/zolotarev.h,
	  lib/actions/ferm/fermacts/zolotarev_coeffs.cc,
	  lib/actions/ferm/fermbcs/fermbc_factory_s.h,
	  lib/actions/ferm/fermbcs/fermbc_factory_w.h,
	  lib/actions/ferm/fermbcs/fermbcs.h,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_s.cc,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_s.h,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_w.cc,
	  lib/actions/ferm/fermbcs/fermbcs_aggregate_w.h,
	  lib/actions/ferm/fermbcs/fermbcs_reader_s.cc,
	  lib/actions/ferm/fermbcs/fermbcs_reader_s.h,
	  lib/actions/ferm/fermbcs/fermbcs_reader_w.cc,
	  lib/actions/ferm/fermbcs/fermbcs_reader_w.h,
	  lib/actions/ferm/fermbcs/periodic_fermbc.h,
	  lib/actions/ferm/fermbcs/periodic_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/periodic_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_chromomag_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_chromomag_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_coupling_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_coupling_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_dirich_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_fermbc_params_w.cc,
	  lib/actions/ferm/fermbcs/schr_fermbc_params_w.h,
	  lib/actions/ferm/fermbcs/schr_nonpert_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_nonpert_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_sf_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_sf_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schr_triv_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/schr_triv_fermbc_w.h,
	  lib/actions/ferm/fermbcs/schroedinger_fermbc_w.h,
	  lib/actions/ferm/fermbcs/simple_fermbc.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_s.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc_s.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.h,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.h,
	  lib/actions/ferm/invert/inv_borici_w.cc,
	  lib/actions/ferm/invert/inv_borici_w.h,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.cc,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.h,
	  lib/actions/ferm/invert/inv_minres_array.cc,
	  lib/actions/ferm/invert/inv_minres_array.h,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.h,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.h,
	  lib/actions/ferm/invert/inv_rel_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_sumr.h,
	  lib/actions/ferm/invert/invbicg.cc,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab.h,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/invert/invbicgstab_array.h,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1.h,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg1_array.h,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2.h,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/invert/invcg2_array.h,
	  lib/actions/ferm/invert/invcg2_timing_hacks.cc,
	  lib/actions/ferm/invert/invcg2_timing_hacks.h,
	  lib/actions/ferm/invert/invert.h,
	  lib/actions/ferm/invert/invmr.cc,
	  lib/actions/ferm/invert/invmr.h,
	  lib/actions/ferm/invert/invsumr.cc,
	  lib/actions/ferm/invert/invsumr.h,
	  lib/actions/ferm/invert/minv_rel_cg.cc,
	  lib/actions/ferm/invert/minv_rel_cg.h,
	  lib/actions/ferm/invert/minv_rel_sumr.cc,
	  lib/actions/ferm/invert/minv_rel_sumr.h,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/invert/minvcg.h,
	  lib/actions/ferm/invert/minvcg_array.cc,
	  lib/actions/ferm/invert/minvcg_array.h,
	  lib/actions/ferm/invert/minvsumr.cc,
	  lib/actions/ferm/invert/minvsumr.h,
	  lib/actions/ferm/linop/asq_dsl_s.cc,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/asqtad_dslash.h,
	  lib/actions/ferm/linop/asqtad_linop_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/asqtad_mdagm_s.cc,
	  lib/actions/ferm/linop/asqtad_mdagm_s.h,
	  lib/actions/ferm/linop/clover_term_base_w.cc,
	  lib/actions/ferm/linop/clover_term_base_w.h,
	  lib/actions/ferm/linop/clover_term_qdp_w.cc,
	  lib/actions/ferm/linop/clover_term_qdp_w.h,
	  lib/actions/ferm/linop/clover_term_w.h,
	  lib/actions/ferm/linop/dslash_array_w.h,
	  lib/actions/ferm/linop/dslash_w.h,
	  lib/actions/ferm/linop/dwffld_w.cc,
	  lib/actions/ferm/linop/dwffld_w.h,
	  lib/actions/ferm/linop/fat7_links_s.cc,
	  lib/actions/ferm/linop/improvement_terms_s.h,
	  lib/actions/ferm/linop/lDeltaLs_w.cc,
	  lib/actions/ferm/linop/lDeltaLs_w.h,
	  lib/actions/ferm/linop/ldumul_w.cc,
	  lib/actions/ferm/linop/lg5Rherm_w.h,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.cc,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.h,
	  lib/actions/ferm/linop/lg5eps_w.cc,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/lgherm_w.h,
	  lib/actions/ferm/linop/linop.h, lib/actions/ferm/linop/linop_s.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/llincomb.h,
	  lib/actions/ferm/linop/lopscl.h,
	  lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovddag_double_pass_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.h,
	  lib/actions/ferm/linop/lwldslash_array_sse_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_sse_w.h,
	  lib/actions/ferm/linop/lwldslash_array_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_w.h,
	  lib/actions/ferm/linop/lwldslash_base_array_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_array_w.h,
	  lib/actions/ferm/linop/lwldslash_base_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_w.h,
	  lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/naik_term_s.cc,
	  lib/actions/ferm/linop/overlapbu_linop_w.cc,
	  lib/actions/ferm/linop/overlapbu_linop_w.h,
	  lib/actions/ferm/linop/ovlap_contfrac5d_w.h,
	  lib/actions/ferm/linop/partrat.h,
	  lib/actions/ferm/linop/polprec_op.h,
	  lib/actions/ferm/linop/polynomial_op.h,
	  lib/actions/ferm/linop/prec_clover_linop_w.cc,
	  lib/actions/ferm/linop/prec_clover_linop_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_clover_linop_w.cc,
	  lib/actions/ferm/linop/unprec_clover_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  lib/actions/ferm/linop/unprec_hamberwu_linop_w.cc,
	  lib/actions/ferm/linop/unprec_hamberwu_linop_w.h,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_w12_linop_w.cc,
	  lib/actions/ferm/linop/unprec_w12_linop_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.h,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h,
	  lib/actions/ferm/qprop/asqtad_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_qprop.h,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.h,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/prec_staggered_qprop.h,
	  lib/actions/ferm/qprop/qprop.h, lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.h,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  lib/actions/gauge/gauge.h,
	  lib/actions/gauge/gaugeacts/gauge_createstate_aggregate.cc,
	  lib/actions/gauge/gaugeacts/gauge_createstate_aggregate.h,
	  lib/actions/gauge/gaugeacts/gauge_createstate_factory.h,
	  lib/actions/gauge/gaugeacts/gaugeact_factory.h,
	  lib/actions/gauge/gaugeacts/gaugeacts.h,
	  lib/actions/gauge/gaugeacts/gaugeacts_aggregate.cc,
	  lib/actions/gauge/gaugeacts/gaugeacts_aggregate.h,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/simple_gaugestate.cc,
	  lib/actions/gauge/gaugeacts/simple_gaugestate.h,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.h,
	  lib/actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_aggregate.h,
	  lib/actions/gauge/gaugebcs/gaugebc_factory.h,
	  lib/actions/gauge/gaugebcs/gaugebcs.h,
	  lib/actions/gauge/gaugebcs/periodic_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/periodic_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_chromomag_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_chromomag_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_coupling_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_coupling_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_dirich_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_gaugebc_params.cc,
	  lib/actions/gauge/gaugebcs/schr_gaugebc_params.h,
	  lib/actions/gauge/gaugebcs/schr_nonpert_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_nonpert_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_sf_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_sf_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schr_triv_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schr_triv_gaugebc.h,
	  lib/actions/gauge/gaugebcs/schroedinger_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/schroedinger_gaugebc.h,
	  lib/actions/gauge/gaugebcs/simple_gaugebc.cc,
	  lib/actions/gauge/gaugebcs/simple_gaugebc.h,
	  lib/init/chroma_init.cc, lib/init/chroma_init.h,
	  lib/io/aniso_io.cc, lib/io/aniso_io.h, lib/io/cfgtype_io.cc,
	  lib/io/cfgtype_io.h, lib/io/cppacs_io.cc, lib/io/cppacs_io.h,
	  lib/io/eigen_io.cc, lib/io/eigen_io.h, lib/io/follana_io_s.cc,
	  lib/io/follana_io_s.h, lib/io/gauge_io.cc, lib/io/gauge_io.h,
	  lib/io/hamiltonian_io.cc, lib/io/hamiltonian_io.h,
	  lib/io/inline_io.cc, lib/io/inline_io.h, lib/io/io.h,
	  lib/io/io_s.h, lib/io/io_w.h, lib/io/kyugauge_io.cc,
	  lib/io/kyugauge_io.h, lib/io/kyuqprop_io.cc,
	  lib/io/kyuqprop_io.h, lib/io/milc_io.cc, lib/io/milc_io.h,
	  lib/io/monomial_io.cc, lib/io/monomial_io.h,
	  lib/io/overlap_state_info.cc, lib/io/overlap_state_info.h,
	  lib/io/param_io.cc, lib/io/param_io.h, lib/io/qprop_io.cc,
	  lib/io/qprop_io.h, lib/io/readcppacs.cc, lib/io/readcppacs.h,
	  lib/io/readmilc.cc, lib/io/readmilc.h, lib/io/readszin.cc,
	  lib/io/readszin.h, lib/io/readszinferm_w.cc,
	  lib/io/readszinferm_w.h, lib/io/readszinqprop_w.cc,
	  lib/io/readszinqprop_w.h, lib/io/smearing_io.cc,
	  lib/io/smearing_io.h, lib/io/szin_io.cc, lib/io/szin_io.h,
	  lib/io/writemilc.cc, lib/io/writemilc.h, lib/io/writeszin.cc,
	  lib/io/writeszin.h, lib/io/writeszinqprop_w.cc,
	  lib/io/writeszinqprop_w.h, lib/io/xmllog_io.h,
	  lib/io/enum_io/enum_cfgtype_io.cc,
	  lib/io/enum_io/enum_cfgtype_io.h,
	  lib/io/enum_io/enum_coeffs_io.cc,
	  lib/io/enum_io/enum_coeffs_io.h,
	  lib/io/enum_io/enum_eigenvectype_io.cc,
	  lib/io/enum_io/enum_eigenvectype_io.h,
	  lib/io/enum_io/enum_fermtype_io.cc,
	  lib/io/enum_io/enum_fermtype_io.h,
	  lib/io/enum_io/enum_gaugeacttype_io.cc,
	  lib/io/enum_io/enum_gaugeacttype_io.h,
	  lib/io/enum_io/enum_gaugebc_io.cc,
	  lib/io/enum_io/enum_gaugebc_io.h,
	  lib/io/enum_io/enum_heatbathtype_io.cc,
	  lib/io/enum_io/enum_heatbathtype_io.h,
	  lib/io/enum_io/enum_inner_solver_type_io.cc,
	  lib/io/enum_io/enum_inner_solver_type_io.h,
	  lib/io/enum_io/enum_invtype_io.cc,
	  lib/io/enum_io/enum_invtype_io.h, lib/io/enum_io/enum_io.h,
	  lib/io/enum_io/enum_md_integrator_type_io.cc,
	  lib/io/enum_io/enum_md_integrator_type_io.h,
	  lib/io/enum_io/enum_proptype_io.cc,
	  lib/io/enum_io/enum_proptype_io.h,
	  lib/io/enum_io/enum_qdpvolfmt_io.cc,
	  lib/io/enum_io/enum_qdpvolfmt_io.h,
	  lib/io/enum_io/enum_quarkspintype_io.cc,
	  lib/io/enum_io/enum_quarkspintype_io.h,
	  lib/io/enum_io/enum_simplebctype_io.cc,
	  lib/io/enum_io/enum_simplebctype_io.h,
	  lib/io/enum_io/enum_srcsnktype_io.cc,
	  lib/io/enum_io/enum_srcsnktype_io.h,
	  lib/io/enum_io/enum_stochsrc_io.cc,
	  lib/io/enum_io/enum_stochsrc_io.h,
	  lib/io/enum_io/enum_type_map.h,
	  lib/io/enum_io/enum_wavetype_io.cc,
	  lib/io/enum_io/enum_wavetype_io.h,
	  lib/io/enum_io/enum_wvfkind_io.cc,
	  lib/io/enum_io/enum_wvfkind_io.h, lib/meas/meas.h,
	  lib/meas/eig/eig.h, lib/meas/eig/eig_s.h,
	  lib/meas/eig/eig_spec.cc, lib/meas/eig/eig_spec.h,
	  lib/meas/eig/eig_spec_array.cc, lib/meas/eig/eig_spec_array.h,
	  lib/meas/eig/eig_w.h, lib/meas/eig/gramschm.cc,
	  lib/meas/eig/gramschm.h, lib/meas/eig/gramschm_array.cc,
	  lib/meas/eig/gramschm_array.h, lib/meas/eig/ischiral_w.cc,
	  lib/meas/eig/ischiral_w.h, lib/meas/eig/ritz.cc,
	  lib/meas/eig/ritz.h, lib/meas/eig/ritz_array.cc,
	  lib/meas/eig/ritz_array.h, lib/meas/eig/sn_jacob.cc,
	  lib/meas/eig/sn_jacob.h, lib/meas/eig/sn_jacob_array.cc,
	  lib/meas/eig/sn_jacob_array.h, lib/meas/gfix/axgauge.cc,
	  lib/meas/gfix/axgauge.h, lib/meas/gfix/coulgauge.cc,
	  lib/meas/gfix/coulgauge.h, lib/meas/gfix/gfix.h,
	  lib/meas/gfix/grelax.cc, lib/meas/gfix/grelax.h,
	  lib/meas/gfix/polar_dec.cc, lib/meas/gfix/polar_dec.h,
	  lib/meas/gfix/rot_colvec.cc, lib/meas/gfix/rot_colvec.h,
	  lib/meas/glue/block.cc, lib/meas/glue/cool.cc,
	  lib/meas/glue/fuzwilp.cc, lib/meas/glue/fuzwilp.h,
	  lib/meas/glue/glue.h, lib/meas/glue/gluecor.cc,
	  lib/meas/glue/mesfield.cc, lib/meas/glue/mesfield.h,
	  lib/meas/glue/meslate.cc, lib/meas/glue/mesplq.cc,
	  lib/meas/glue/mesplq.h, lib/meas/glue/mesq.cc,
	  lib/meas/glue/polycor.cc, lib/meas/glue/polylp.cc,
	  lib/meas/glue/polylp.h, lib/meas/glue/qactden.cc,
	  lib/meas/glue/qnaive.cc, lib/meas/glue/qtopcor.cc,
	  lib/meas/glue/topol.cc, lib/meas/glue/wilslp.cc,
	  lib/meas/glue/wilslp.h, lib/meas/hadron/BuildingBlocks_w.cc,
	  lib/meas/hadron/BuildingBlocks_w.h, lib/meas/hadron/D_j_w.cc,
	  lib/meas/hadron/D_j_w.h, lib/meas/hadron/DjDk_w.cc,
	  lib/meas/hadron/DjDk_w.h, lib/meas/hadron/barcomp_w.cc,
	  lib/meas/hadron/barcomp_w.h, lib/meas/hadron/barhqlq_w.cc,
	  lib/meas/hadron/barhqlq_w.h, lib/meas/hadron/barseqsrc_w.cc,
	  lib/meas/hadron/barseqsrc_w.h, lib/meas/hadron/barspinmat_w.cc,
	  lib/meas/hadron/barspinmat_w.h, lib/meas/hadron/baryon_s.cc,
	  lib/meas/hadron/baryon_s.h, lib/meas/hadron/baryon_w.cc,
	  lib/meas/hadron/baryon_w.h, lib/meas/hadron/curcor2_w.cc,
	  lib/meas/hadron/curcor2_w.h,
	  lib/meas/hadron/derivmesonseqsrc_w.cc,
	  lib/meas/hadron/derivmesonseqsrc_w.h,
	  lib/meas/hadron/enum_loops_s.h, lib/meas/hadron/formfac_w.cc,
	  lib/meas/hadron/formfac_w.h, lib/meas/hadron/hadron.h,
	  lib/meas/hadron/hadron_corr_s.h, lib/meas/hadron/hadron_s.h,
	  lib/meas/hadron/hadron_seqsource.cc,
	  lib/meas/hadron/hadron_seqsource.h, lib/meas/hadron/hadron_w.h,
	  lib/meas/hadron/hadseqsrc_w.h, lib/meas/hadron/hybmeson_w.cc,
	  lib/meas/hadron/hybmeson_w.h, lib/meas/hadron/ks_local_loops.cc,
	  lib/meas/hadron/ks_local_loops.h, lib/meas/hadron/loops_s.h,
	  lib/meas/hadron/loops_w.cc, lib/meas/hadron/loops_w.h,
	  lib/meas/hadron/mescomp_w.cc, lib/meas/hadron/mescomp_w.h,
	  lib/meas/hadron/mesons_w.cc, lib/meas/hadron/mesons_w.h,
	  lib/meas/hadron/mesonseqsrc_w.cc,
	  lib/meas/hadron/mesonseqsrc_w.h,
	  lib/meas/hadron/mesphas_follana_s.cc,
	  lib/meas/hadron/mesphas_follana_s.h,
	  lib/meas/hadron/mesphas_s.cc, lib/meas/hadron/mesphas_s.h,
	  lib/meas/hadron/multipole_w.cc, lib/meas/hadron/multipole_w.h,
	  lib/meas/hadron/photon_seqsrc_w.cc,
	  lib/meas/hadron/photon_seqsrc_w.h,
	  lib/meas/hadron/pion_local_s.cc, lib/meas/hadron/pion_local_s.h,
	  lib/meas/hadron/pion_sing_s.cc, lib/meas/hadron/pion_sing_s.h,
	  lib/meas/hadron/pions_s.cc, lib/meas/hadron/pions_s.h,
	  lib/meas/hadron/pseudoscalar_loops_s.cc,
	  lib/meas/hadron/pseudoscalar_loops_s.h,
	  lib/meas/hadron/pseudoscalar_stoch_conn_s.cc,
	  lib/meas/hadron/pseudoscalar_stoch_conn_s.h,
	  lib/meas/hadron/qqbar_w.cc, lib/meas/hadron/qqbar_w.h,
	  lib/meas/hadron/qqq_w.cc, lib/meas/hadron/qqq_w.h,
	  lib/meas/hadron/scalar_loops_s.cc,
	  lib/meas/hadron/scalar_loops_s.h,
	  lib/meas/hadron/seqpiontest_w.cc,
	  lib/meas/hadron/seqpiontest_w.h,
	  lib/meas/hadron/seqsource_aggregate_w.cc,
	  lib/meas/hadron/seqsource_aggregate_w.h,
	  lib/meas/hadron/seqsource_factory_w.h,
	  lib/meas/hadron/stag_propShift_s.cc,
	  lib/meas/hadron/stag_propShift_s.h,
	  lib/meas/hadron/stag_scalars_s.cc,
	  lib/meas/hadron/stag_scalars_s.h, lib/meas/hadron/stoch_conn_s.h,
	  lib/meas/hadron/stoch_var.cc, lib/meas/hadron/stoch_var.h,
	  lib/meas/hadron/vector_meson_s.cc,
	  lib/meas/hadron/vector_meson_s.h,
	  lib/meas/hadron/wall_qprop_w.cc, lib/meas/hadron/wall_qprop_w.h,
	  lib/meas/hadron/walldeltaff_w.cc,
	  lib/meas/hadron/walldeltaff_w.h,
	  lib/meas/hadron/walldeltapff_w.cc,
	  lib/meas/hadron/walldeltapff_w.h, lib/meas/hadron/wallff_w.cc,
	  lib/meas/hadron/wallff_w.h, lib/meas/hadron/wallnuclff_w.cc,
	  lib/meas/hadron/wallnuclff_w.h, lib/meas/hadron/wallpionff_w.cc,
	  lib/meas/hadron/wallpionff_w.h, lib/meas/hadron/wallrhoff_w.cc,
	  lib/meas/hadron/wallrhoff_w.h, lib/meas/hadron/wallrhopiff_w.cc,
	  lib/meas/hadron/wallrhopiff_w.h,
	  lib/meas/inline/abs_inline_measurement.h,
	  lib/meas/inline/abs_inline_measurement_factory.h,
	  lib/meas/inline/inline.h, lib/meas/inline/inline_aggregate.cc,
	  lib/meas/inline/inline_aggregate.h,
	  lib/meas/inline/make_xml_file.cc,
	  lib/meas/inline/make_xml_file.h, lib/meas/inline/eig/eig.h,
	  lib/meas/inline/eig/inline_eig_aggregate.cc,
	  lib/meas/inline/eig/inline_eig_aggregate.h,
	  lib/meas/inline/eig/inline_eigbnds.cc,
	  lib/meas/inline/eig/inline_eigbnds.h,
	  lib/meas/inline/eig/inline_ritz_H_w.cc,
	  lib/meas/inline/eig/inline_ritz_H_w.h,
	  lib/meas/inline/gfix/gfix.h,
	  lib/meas/inline/gfix/inline_coulgauge.cc,
	  lib/meas/inline/gfix/inline_coulgauge.h,
	  lib/meas/inline/gfix/inline_gfix_aggregate.cc,
	  lib/meas/inline/gfix/inline_gfix_aggregate.h,
	  lib/meas/inline/glue/glue.h,
	  lib/meas/inline/glue/inline_fuzwilp.cc,
	  lib/meas/inline/glue/inline_fuzwilp.h,
	  lib/meas/inline/glue/inline_glue_aggregate.cc,
	  lib/meas/inline/glue/inline_glue_aggregate.h,
	  lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_plaquette.h,
	  lib/meas/inline/glue/inline_polylp.cc,
	  lib/meas/inline/glue/inline_polylp.h,
	  lib/meas/inline/glue/inline_wilslp.cc,
	  lib/meas/inline/glue/inline_wilslp.h,
	  lib/meas/inline/hadron/hadron.h,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.cc,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.h,
	  lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_hadron_aggregate.h,
	  lib/meas/inline/hadron/inline_hadspec_w.cc,
	  lib/meas/inline/hadron/inline_hadspec_w.h,
	  lib/meas/inline/hadron/inline_make_source_ferm_w.cc,
	  lib/meas/inline/hadron/inline_make_source_ferm_w.h,
	  lib/meas/inline/hadron/inline_make_source_w.cc,
	  lib/meas/inline/hadron/inline_make_source_w.h,
	  lib/meas/inline/hadron/inline_mesonspec_w.cc,
	  lib/meas/inline/hadron/inline_mesonspec_w.h,
	  lib/meas/inline/hadron/inline_mres_w.cc,
	  lib/meas/inline/hadron/inline_mres_w.h,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.h,
	  lib/meas/inline/hadron/inline_multipole_w.cc,
	  lib/meas/inline/hadron/inline_multipole_w.h,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.h,
	  lib/meas/inline/hadron/inline_propagator_ferm_w.cc,
	  lib/meas/inline/hadron/inline_propagator_ferm_w.h,
	  lib/meas/inline/hadron/inline_propagator_w.cc,
	  lib/meas/inline/hadron/inline_propagator_w.h,
	  lib/meas/inline/hadron/inline_qpropadd_w.cc,
	  lib/meas/inline/hadron/inline_qpropadd_w.h,
	  lib/meas/inline/hadron/inline_qpropqio_w.cc,
	  lib/meas/inline/hadron/inline_qpropqio_w.h,
	  lib/meas/inline/hadron/inline_qqbar_w.cc,
	  lib/meas/inline/hadron/inline_qqbar_w.h,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.cc,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.h,
	  lib/meas/inline/hadron/inline_qqq_w.cc,
	  lib/meas/inline/hadron/inline_qqq_w.h,
	  lib/meas/inline/hadron/inline_seqsource_w.cc,
	  lib/meas/inline/hadron/inline_seqsource_w.h,
	  lib/meas/inline/hadron/inline_sink_smear_w.cc,
	  lib/meas/inline/hadron/inline_sink_smear_w.h,
	  lib/meas/inline/hadron/inline_spectrumOct_w.cc,
	  lib/meas/inline/hadron/inline_spectrumOct_w.h,
	  lib/meas/inline/hadron/inline_spectrum_w.cc,
	  lib/meas/inline/hadron/inline_spectrum_w.h,
	  lib/meas/inline/hadron_s/hadron_s.h,
	  lib/meas/inline/hadron_s/inline_hadron_aggregate_s.cc,
	  lib/meas/inline/hadron_s/inline_hadron_aggregate_s.h,
	  lib/meas/inline/hadron_s/inline_spectrum_s.cc,
	  lib/meas/inline/hadron_s/inline_spectrum_s.h,
	  lib/meas/inline/hadron_s/util_baryon_s.cc,
	  lib/meas/inline/hadron_s/util_compute_8_pions_s.cc,
	  lib/meas/inline/hadron_s/util_compute_8_scalars_s.cc,
	  lib/meas/inline/hadron_s/util_compute_8_vectors_s.cc,
	  lib/meas/inline/hadron_s/util_compute_meson_s.cc,
	  lib/meas/inline/hadron_s/util_compute_meson_s.h,
	  lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc,
	  lib/meas/inline/hadron_s/util_compute_quark_prop_s.h,
	  lib/meas/inline/hadron_s/util_compute_singlet_ps.cc,
	  lib/meas/inline/io/default_gauge_field.cc,
	  lib/meas/inline/io/default_gauge_field.h,
	  lib/meas/inline/io/inline_erase_obj.cc,
	  lib/meas/inline/io/inline_erase_obj.h,
	  lib/meas/inline/io/inline_gaussian_obj.cc,
	  lib/meas/inline/io/inline_gaussian_obj.h,
	  lib/meas/inline/io/inline_io_aggregate.cc,
	  lib/meas/inline/io/inline_io_aggregate.h,
	  lib/meas/inline/io/inline_list_obj.cc,
	  lib/meas/inline/io/inline_list_obj.h,
	  lib/meas/inline/io/inline_nersc_write_obj.cc,
	  lib/meas/inline/io/inline_nersc_write_obj.h,
	  lib/meas/inline/io/inline_qio_read_obj.cc,
	  lib/meas/inline/io/inline_qio_read_obj.h,
	  lib/meas/inline/io/inline_qio_write_erase_obj.cc,
	  lib/meas/inline/io/inline_qio_write_erase_obj.h,
	  lib/meas/inline/io/inline_qio_write_obj.cc,
	  lib/meas/inline/io/inline_qio_write_obj.h,
	  lib/meas/inline/io/inline_snarf_obj.cc,
	  lib/meas/inline/io/inline_snarf_obj.h,
	  lib/meas/inline/io/inline_szin_read_obj.cc,
	  lib/meas/inline/io/inline_szin_read_obj.h,
	  lib/meas/inline/io/inline_szin_write_obj.cc,
	  lib/meas/inline/io/inline_szin_write_obj.h,
	  lib/meas/inline/io/inline_xml_write_obj.cc,
	  lib/meas/inline/io/inline_xml_write_obj.h,
	  lib/meas/inline/io/io.h, lib/meas/inline/io/named_objmap.h,
	  lib/meas/inline/io/qio_read_obj_funcmap.cc,
	  lib/meas/inline/io/qio_read_obj_funcmap.h,
	  lib/meas/inline/io/qio_write_obj_funcmap.cc,
	  lib/meas/inline/io/qio_write_obj_funcmap.h,
	  lib/meas/inline/io/szin_read_obj_funcmap.cc,
	  lib/meas/inline/io/szin_read_obj_funcmap.h,
	  lib/meas/inline/io/szin_write_obj_funcmap.cc,
	  lib/meas/inline/io/szin_write_obj_funcmap.h,
	  lib/meas/inline/io/xml_write_obj_funcmap.cc,
	  lib/meas/inline/io/xml_write_obj_funcmap.h,
	  lib/meas/inline/smear/inline_ape_smear.cc,
	  lib/meas/inline/smear/inline_ape_smear.h,
	  lib/meas/inline/smear/inline_hyp_smear.cc,
	  lib/meas/inline/smear/inline_hyp_smear.h,
	  lib/meas/inline/smear/inline_link_smear.cc,
	  lib/meas/inline/smear/inline_link_smear.h,
	  lib/meas/inline/smear/inline_smear_aggregate.cc,
	  lib/meas/inline/smear/inline_smear_aggregate.h,
	  lib/meas/inline/smear/inline_stout_smear.cc,
	  lib/meas/inline/smear/inline_stout_smear.h,
	  lib/meas/inline/smear/smear.h, lib/meas/pbp/mespbg5p_w.cc,
	  lib/meas/pbp/mespbp_s.cc, lib/meas/pbp/mespbp_w.cc,
	  lib/meas/pbp/ovpbg5p_w.cc, lib/meas/pbp/pbg5p_w.cc,
	  lib/meas/pbp/pbp.h, lib/meas/pbp/stagpbp_s.cc,
	  lib/meas/schrfun/schrfun.h, lib/meas/schrfun/sfcurcor_w.cc,
	  lib/meas/schrfun/sfpcac_w.cc, lib/meas/sinks/pt_sink_smearing.cc,
	  lib/meas/sinks/pt_sink_smearing.h,
	  lib/meas/sinks/sh_sink_smearing.cc,
	  lib/meas/sinks/sh_sink_smearing.h,
	  lib/meas/sinks/sink_smearing_aggregate.cc,
	  lib/meas/sinks/sink_smearing_aggregate.h,
	  lib/meas/sinks/sink_smearing_factory.h, lib/meas/sinks/sinks.h,
	  lib/meas/smear/ape_link_smearing.cc,
	  lib/meas/smear/ape_link_smearing.h, lib/meas/smear/ape_smear.cc,
	  lib/meas/smear/ape_smear.h,
	  lib/meas/smear/deriv_quark_displacement_w.cc,
	  lib/meas/smear/deriv_quark_displacement_w.h,
	  lib/meas/smear/displacement.cc, lib/meas/smear/displacement.h,
	  lib/meas/smear/fuzz_smear.cc, lib/meas/smear/fuzz_smear.h,
	  lib/meas/smear/gaus_quark_smearing.cc,
	  lib/meas/smear/gaus_quark_smearing.h,
	  lib/meas/smear/gaus_smear.cc, lib/meas/smear/gaus_smear.h,
	  lib/meas/smear/hyp_link_smearing.cc,
	  lib/meas/smear/hyp_link_smearing.h, lib/meas/smear/hyp_smear.cc,
	  lib/meas/smear/hyp_smear.h, lib/meas/smear/hyp_smear3d.cc,
	  lib/meas/smear/hyp_smear3d.h, lib/meas/smear/jacobi_smear.cc,
	  lib/meas/smear/laplacian.cc, lib/meas/smear/laplacian.h,
	  lib/meas/smear/link_smearing.h,
	  lib/meas/smear/link_smearing_aggregate.cc,
	  lib/meas/smear/link_smearing_aggregate.h,
	  lib/meas/smear/link_smearing_factory.cc,
	  lib/meas/smear/link_smearing_factory.h,
	  lib/meas/smear/no_quark_displacement.cc,
	  lib/meas/smear/no_quark_displacement.h,
	  lib/meas/smear/quark_displacement.h,
	  lib/meas/smear/quark_displacement_aggregate.cc,
	  lib/meas/smear/quark_displacement_aggregate.h,
	  lib/meas/smear/quark_displacement_factory.h,
	  lib/meas/smear/quark_smearing.h,
	  lib/meas/smear/quark_smearing_aggregate.cc,
	  lib/meas/smear/quark_smearing_aggregate.h,
	  lib/meas/smear/quark_smearing_factory.h,
	  lib/meas/smear/quark_source_sink.h,
	  lib/meas/smear/simple_quark_displacement.cc,
	  lib/meas/smear/simple_quark_displacement.h,
	  lib/meas/smear/sink_smear2.cc, lib/meas/smear/sink_smear2.h,
	  lib/meas/smear/smear.h, lib/meas/smear/stout_link_smearing.cc,
	  lib/meas/smear/stout_link_smearing.h,
	  lib/meas/smear/stout_smear.cc, lib/meas/smear/stout_smear.h,
	  lib/meas/smear/wupp_smear.cc, lib/meas/smear/wvfkind.h,
	  lib/meas/sources/d_src_w.cc, lib/meas/sources/d_src_w.h,
	  lib/meas/sources/dilute_gauss_src_s.cc,
	  lib/meas/sources/dilute_gauss_src_s.h,
	  lib/meas/sources/dilutezN_source_const.cc,
	  lib/meas/sources/dilutezN_source_const.h,
	  lib/meas/sources/maksrc2_w.cc, lib/meas/sources/p_src_w.cc,
	  lib/meas/sources/p_src_w.h,
	  lib/meas/sources/partwall_source_const.cc,
	  lib/meas/sources/partwall_source_const.h,
	  lib/meas/sources/pt_source_const.cc,
	  lib/meas/sources/pt_source_const.h,
	  lib/meas/sources/pt_source_smearing.cc,
	  lib/meas/sources/pt_source_smearing.h,
	  lib/meas/sources/rndz2wall_source_const.cc,
	  lib/meas/sources/rndz2wall_source_const.h,
	  lib/meas/sources/sh_source_const.cc,
	  lib/meas/sources/sh_source_const.h,
	  lib/meas/sources/sh_source_smearing.cc,
	  lib/meas/sources/sh_source_smearing.h,
	  lib/meas/sources/source_const_aggregate.cc,
	  lib/meas/sources/source_const_aggregate.h,
	  lib/meas/sources/source_const_factory.h,
	  lib/meas/sources/source_construction.h,
	  lib/meas/sources/source_smearing_aggregate.cc,
	  lib/meas/sources/source_smearing_aggregate.h,
	  lib/meas/sources/source_smearing_factory.h,
	  lib/meas/sources/sources.h, lib/meas/sources/sources_s.h,
	  lib/meas/sources/sources_w.h, lib/meas/sources/srcfil.cc,
	  lib/meas/sources/srcfil.h, lib/meas/sources/srcsnktype.h,
	  lib/meas/sources/walfil_s.cc, lib/meas/sources/walfil_s.h,
	  lib/meas/sources/walfil_w.cc, lib/meas/sources/walfil_w.h,
	  lib/meas/sources/wall_source_const.cc,
	  lib/meas/sources/wall_source_const.h,
	  lib/meas/sources/wavetype.h, lib/meas/sources/z2_src.cc,
	  lib/meas/sources/z2_src.h, lib/meas/sources/zN_src.cc,
	  lib/meas/sources/zN_src.h, lib/meas/trln/pade_trln_w.cc,
	  lib/meas/trln/trln.h, lib/update/update.h,
	  lib/update/heatbath/hb_params.h, lib/update/heatbath/heatbath.h,
	  lib/update/heatbath/mciter.cc, lib/update/heatbath/mciter.h,
	  lib/update/heatbath/mciter32.cc, lib/update/heatbath/mciter32.h,
	  lib/update/heatbath/monte.cc, lib/update/heatbath/monte.h,
	  lib/update/heatbath/su2_hb_update.cc,
	  lib/update/heatbath/su2_hb_update.h,
	  lib/update/heatbath/su3_hb_sweep.cc,
	  lib/update/heatbath/su3_hb_sweep.h, lib/update/heatbath/su3hb.cc,
	  lib/update/heatbath/su3hb.h, lib/update/heatbath/su3over.cc,
	  lib/update/heatbath/su3over.h, lib/update/heatbath/u_staple.cc,
	  lib/update/heatbath/u_staple.h,
	  lib/update/molecdyn/field_state.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/hamiltonian/abs_hamiltonian.h,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  lib/update/molecdyn/hamiltonian/hamiltonian.h,
	  lib/update/molecdyn/hmc/abs_hmc.h,
	  lib/update/molecdyn/hmc/global_metropolis_accrej.cc,
	  lib/update/molecdyn/hmc/global_metropolis_accrej.h,
	  lib/update/molecdyn/hmc/hmc.h, lib/update/molecdyn/hmc/lcm_hmc.h,
	  lib/update/molecdyn/integrator/abs_integrator.h,
	  lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/integrator_aggregate.h,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.h,
	  lib/update/molecdyn/integrator/md_integrator_factory.h,
	  lib/update/molecdyn/monomial/abs_monomial.h,
	  lib/update/molecdyn/monomial/gauge_monomial.cc,
	  lib/update/molecdyn/monomial/gauge_monomial.h,
	  lib/update/molecdyn/monomial/genapprox.cc,
	  lib/update/molecdyn/monomial/genapprox.h,
	  lib/update/molecdyn/monomial/monomial.h,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.cc,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.h,
	  lib/update/molecdyn/monomial/monomial_factory.h,
	  lib/update/molecdyn/monomial/monomial_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_params_w.cc,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_params_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_params_w.cc,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_params_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_params_w.cc,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_params_w.h,
	  lib/update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_params_w.cc,
	  lib/update/molecdyn/monomial/two_flavor_monomial_params_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h,
	  lib/update/molecdyn/old/clovdsduf_w.cc,
	  lib/update/molecdyn/old/dsdu.cc,
	  lib/update/molecdyn/old/dsduf_s.cc,
	  lib/update/molecdyn/old/dsduf_w.cc,
	  lib/update/molecdyn/old/hamilton.h,
	  lib/update/molecdyn/old/hybrid.cc,
	  lib/update/molecdyn/old/hybrid.h,
	  lib/update/molecdyn/old/molecdyn.h,
	  lib/update/molecdyn/old/ovdsduf_w.cc,
	  lib/update/molecdyn/old/polydsduf_s.cc,
	  lib/update/molecdyn/old/polydsduf_w.cc,
	  lib/update/molecdyn/old/ratdsduf_s.cc,
	  lib/update/molecdyn/old/ratdsduf_w.cc,
	  lib/update/molecdyn/old/stdsduf_s.cc,
	  lib/update/molecdyn/old/triacntr_w.cc,
	  lib/update/molecdyn/old/wils_hamsys_w.h,
	  lib/update/molecdyn/old/wldsduf_w.cc,
	  lib/update/molecdyn/old/wlhdsduf_w.cc,
	  lib/update/molecdyn/old/mese/clmesferm_w.cc,
	  lib/update/molecdyn/old/mese/mese.cc,
	  lib/update/molecdyn/old/mese/mesferm_w.cc,
	  lib/update/molecdyn/old/mese/mesmom.cc,
	  lib/update/molecdyn/old/mese/ratmesferm_s.cc,
	  lib/update/molecdyn/old/mese/ratmesferm_w.cc,
	  lib/update/molecdyn/old/mese/wlmesferm_w.cc,
	  lib/update/molecdyn/old/noise/frmnse_w.cc,
	  lib/update/molecdyn/old/noise/polyfrmnse_s.cc,
	  lib/update/molecdyn/old/noise/polyfrmnse_w.cc,
	  lib/update/molecdyn/old/noise/ratfrmnse_s.cc,
	  lib/update/molecdyn/old/noise/ratfrmnse_w.cc,
	  lib/update/molecdyn/old/noise/wlfrmnse_w.cc,
	  lib/update/molecdyn/old/step/camptrj.cc,
	  lib/update/molecdyn/old/step/endoftrj.cc,
	  lib/update/molecdyn/old/step/hybtrj.cc,
	  lib/update/molecdyn/old/step/interpol.cc,
	  lib/update/molecdyn/old/step/leapp.cc,
	  lib/update/molecdyn/old/step/leappmx.cc,
	  lib/update/molecdyn/old/step/leapu.cc,
	  lib/update/molecdyn/old/step/refrsh.cc,
	  lib/update/molecdyn/old/step/rhybtrj.cc,
	  lib/update/molecdyn/predictor/chrono_predictor.h,
	  lib/update/molecdyn/predictor/chrono_predictor_factory.h,
	  lib/update/molecdyn/predictor/circular_buffer.h,
	  lib/update/molecdyn/predictor/last_solution_predictor.cc,
	  lib/update/molecdyn/predictor/last_solution_predictor.h,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.h,
	  lib/update/molecdyn/predictor/lu_solve.cc,
	  lib/update/molecdyn/predictor/lu_solve.h,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.h,
	  lib/update/molecdyn/predictor/predictor.h,
	  lib/update/molecdyn/predictor/predictor_aggregate.cc,
	  lib/update/molecdyn/predictor/predictor_aggregate.h,
	  lib/update/molecdyn/predictor/zero_guess_predictor.cc,
	  lib/update/molecdyn/predictor/zero_guess_predictor.h,
	  lib/util/util.h, lib/util/ferm/antisymtensor.cc,
	  lib/util/ferm/antisymtensor.h, lib/util/ferm/diractodr.cc,
	  lib/util/ferm/diractodr.h, lib/util/ferm/eigeninfo.h,
	  lib/util/ferm/etensor.cc, lib/util/ferm/etensor.h,
	  lib/util/ferm/ferm.h, lib/util/ferm/ferm_s.h,
	  lib/util/ferm/ferm_w.h, lib/util/ferm/gammasgn_w.cc,
	  lib/util/ferm/gammasgn_w.h, lib/util/ferm/paulitodr.cc,
	  lib/util/ferm/paulitodr.h, lib/util/ferm/symtensor.cc,
	  lib/util/ferm/symtensor.h, lib/util/ferm/tdiractodr.cc,
	  lib/util/ferm/tdiractodr.h, lib/util/ferm/transf.cc,
	  lib/util/ferm/transf.h, lib/util/ft/ft.h, lib/util/ft/sftmom.cc,
	  lib/util/ft/sftmom.h, lib/util/gauge/conjgauge.cc,
	  lib/util/gauge/conjgauge.h, lib/util/gauge/constgauge.cc,
	  lib/util/gauge/constgauge.h, lib/util/gauge/eesu2.cc,
	  lib/util/gauge/eesu2.h, lib/util/gauge/eesu3.cc,
	  lib/util/gauge/eesu3.h, lib/util/gauge/eeu1.cc,
	  lib/util/gauge/eeu1.h, lib/util/gauge/expm12.cc,
	  lib/util/gauge/expm12.h, lib/util/gauge/expmat.cc,
	  lib/util/gauge/expmat.h, lib/util/gauge/expsu3.cc,
	  lib/util/gauge/expsu3.h, lib/util/gauge/gauge.h,
	  lib/util/gauge/gauge_s.h, lib/util/gauge/gauge_startup.cc,
	  lib/util/gauge/gauge_startup.h, lib/util/gauge/hotst.cc,
	  lib/util/gauge/hotst.h, lib/util/gauge/reunit.cc,
	  lib/util/gauge/reunit.h, lib/util/gauge/rgauge.cc,
	  lib/util/gauge/rgauge.h, lib/util/gauge/stag_phases_s.cc,
	  lib/util/gauge/stag_phases_s.h, lib/util/gauge/su2extract.cc,
	  lib/util/gauge/su2extract.h, lib/util/gauge/su3proj.cc,
	  lib/util/gauge/su3proj.h, lib/util/gauge/sun_proj.cc,
	  lib/util/gauge/sun_proj.h, lib/util/gauge/sunfill.cc,
	  lib/util/gauge/sunfill.h, lib/util/gauge/taproj.cc,
	  lib/util/gauge/taproj.h, lib/util/gauge/unit_check.cc,
	  lib/util/gauge/unit_check.h, lib/util/gauge/weak_field.cc,
	  lib/util/gauge/weak_field.h, lib/util/info/info.h,
	  lib/util/info/printgeom.cc, lib/util/info/printgeom.h,
	  lib/util/info/proginfo.cc, lib/util/info/proginfo.h,
	  mainprogs/Makefile.am, mainprogs/mainprogs.h,
	  mainprogs/main/ExampleBuildingBlocks.cc,
	  mainprogs/main/Makefile.am, mainprogs/main/cfgtransf.cc,
	  mainprogs/main/chroma.cc,
	  mainprogs/main/collect_multi_propcomp.cc,
	  mainprogs/main/collect_propcomp.cc, mainprogs/main/hmc.cc,
	  mainprogs/main/main.h, mainprogs/main/make_seeds.cc,
	  mainprogs/main/multi_propagator_comp.cc,
	  mainprogs/main/propagator_comp.cc, mainprogs/main/purgaug.cc,
	  mainprogs/main/qpropadd.cc, mainprogs/main/qpropgfix.cc,
	  mainprogs/main/qpropqio.cc, mainprogs/main/qproptransf.cc,
	  mainprogs/main/qproptrev.cc, mainprogs/main/spectrum_s.cc,
	  mainprogs/main/stoch_meson.cc, mainprogs/main/wallformfac.cc,
	  mainprogs/tests/INPUT_W.xml,
	  mainprogs/tests/INPUT_t_propagator_twisted.xml,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/invcg2_prec_wilson.cc,
	  mainprogs/tests/invcg2_prec_wilson.h,
	  mainprogs/tests/invcg2_timing_hacks_2.cc,
	  mainprogs/tests/invcg2_timing_hacks_2.h,
	  mainprogs/tests/invcg2_timing_hacks_3.cc,
	  mainprogs/tests/invcg2_timing_hacks_3.h,
	  mainprogs/tests/t_ape_smear.cc, mainprogs/tests/t_bicgstab.cc,
	  mainprogs/tests/t_circular_buffer.cc,
	  mainprogs/tests/t_conslinop.cc, mainprogs/tests/t_disc_loop_s.cc,
	  mainprogs/tests/t_dslashm.cc, mainprogs/tests/t_dwf4d.cc,
	  mainprogs/tests/t_dwflinop.cc, mainprogs/tests/t_dwflocality.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_follana_io_s.cc,
	  mainprogs/tests/t_follana_pion_s.cc,
	  mainprogs/tests/t_formfac.cc, mainprogs/tests/t_fuzwilp.cc,
	  mainprogs/tests/t_fuzwilp.out.test,
	  mainprogs/tests/t_g5eps_bj.cc, mainprogs/tests/t_gauge_force.cc,
	  mainprogs/tests/t_gfix.cc, mainprogs/tests/t_hamiltonian.cc,
	  mainprogs/tests/t_hamsys.cc, mainprogs/tests/t_hamsys_ferm.cc,
	  mainprogs/tests/t_hmc_pg.cc, mainprogs/tests/t_hypsmear.cc,
	  mainprogs/tests/t_invborici.cc,
	  mainprogs/tests/t_invert3_precwilson.cc,
	  mainprogs/tests/t_invert4_precwilson.cc,
	  mainprogs/tests/t_invrelcg.cc, mainprogs/tests/t_io.cc,
	  mainprogs/tests/t_leapfrog.cc, mainprogs/tests/t_lower_tests.cc,
	  mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_array.cc,
	  mainprogs/tests/t_lwldslash_pab.cc,
	  mainprogs/tests/t_lwldslash_sse.cc,
	  mainprogs/tests/t_mesons_w.cc, mainprogs/tests/t_mesplq.cc,
	  mainprogs/tests/t_mres_4d.cc, mainprogs/tests/t_msumr.cc,
	  mainprogs/tests/t_neflinop.cc, mainprogs/tests/t_ov_pbp.cc,
	  mainprogs/tests/t_overbu.cc, mainprogs/tests/t_ovlap5d_bj.cc,
	  mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_ovlap_double_pass.cc,
	  mainprogs/tests/t_prec_contfrac.cc,
	  mainprogs/tests/t_prec_nef.cc,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_prec_wilson_force.cc,
	  mainprogs/tests/t_precact_4d.cc, mainprogs/tests/t_precact_5d.cc,
	  mainprogs/tests/t_precact_sse.cc, mainprogs/tests/t_preccfz.cc,
	  mainprogs/tests/t_preccfz_opt.cc, mainprogs/tests/t_precdwf.cc,
	  mainprogs/tests/t_precnef.cc,
	  mainprogs/tests/t_propagator_fuzz_baryon_s.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_nrqcd.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_twisted.cc,
	  mainprogs/tests/t_propagator_w.cc,
	  mainprogs/tests/t_read_eigen.cc, mainprogs/tests/t_rel_gmresr.cc,
	  mainprogs/tests/t_remez.cc, mainprogs/tests/t_ritz.cc,
	  mainprogs/tests/t_ritz5d_KS.cc, mainprogs/tests/t_ritz_KS.cc,
	  mainprogs/tests/t_seqsource.cc, mainprogs/tests/t_spprod.cc,
	  mainprogs/tests/t_stout_state.cc, mainprogs/tests/t_su3.cc,
	  mainprogs/tests/t_sumr.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_wilson_force.cc,
	  mainprogs/tests/t_wilslp.cc, mainprogs/tests/t_wlinvcg.cc,
	  mainprogs/tests/tests.h, other_libs/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/AUTHORS,
	  other_libs/intel_sse_wilson_dslash/COPYING,
	  other_libs/intel_sse_wilson_dslash/INSTALL,
	  other_libs/intel_sse_wilson_dslash/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/NEWS,
	  other_libs/intel_sse_wilson_dslash/README,
	  other_libs/intel_sse_wilson_dslash/acinclude.m4,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure,
	  other_libs/intel_sse_wilson_dslash/configure.ac,
	  other_libs/intel_sse_wilson_dslash/config/config.guess,
	  other_libs/intel_sse_wilson_dslash/config/config.sub,
	  other_libs/intel_sse_wilson_dslash/config/depcomp,
	  other_libs/intel_sse_wilson_dslash/config/install-sh,
	  other_libs/intel_sse_wilson_dslash/config/missing,
	  other_libs/intel_sse_wilson_dslash/config/mkinstalldirs,
	  other_libs/intel_sse_wilson_dslash/examples/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/examples/rannyu.c,
	  other_libs/intel_sse_wilson_dslash/examples/rannyu.h,
	  other_libs/intel_sse_wilson_dslash/examples/t_dslash.c,
	  other_libs/intel_sse_wilson_dslash/examples/t_wnxtwlcg.c,
	  other_libs/intel_sse_wilson_dslash/examples/test.h,
	  other_libs/intel_sse_wilson_dslash/include/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/include/sse32.h,
	  other_libs/intel_sse_wilson_dslash/include/sse64.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_align.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_config.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_config_internal.h.in,
	  other_libs/intel_sse_wilson_dslash/lib/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/lib/out,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/nopad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/nopad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/p4_pad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/p4_pad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/scalar/shift_tables.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/32bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/32bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/64bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/64bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/nopad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/nopad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/p4_pad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/p4_pad/qdp_packer.cc,
	  scripts/README_buildtest.sh, scripts/build.sh,
	  scripts/build_include_headers.pl,
	  scripts/build_libchroma_sources.pl, scripts/config.pl,
	  scripts/formfact_pion.pl, scripts/link.pl,
	  scripts/makemake_chroma.sh, scripts/makemake_qdp.sh,
	  scripts/makemake_qmp.sh, scripts/run_chroma_xmldiff.pl,
	  scripts/run_xmldiff.pl, scripts/strip_bar3ptfn.pl,
	  scripts/strip_spectrum_w.pl, scripts/wallformfac_delta.pl,
	  scripts/wallformfac_nucl.pl, scripts/wallformfac_pion.pl,
	  scripts/wallformfac_rhopi.pl, tests/gfix.cfg1,
	  tests/gtransf.lime1, tests/regres.pl, tests/test_purgaug.cfg1,
	  tests/cfgtransf/gfix.ini,
	  tests/cfgtransf/gfix.linux-scalar-intel.xml,
	  tests/chroma/chroma_simple.xml.ini,
	  tests/chroma/eig/eigbnds-v1.ini.xml,
	  tests/chroma/eig/eigbnds-v1.out.xml, tests/chroma/eig/regres.pl,
	  tests/chroma/eig/ritz_Hw-v1.ini.xml,
	  tests/chroma/eig/ritz_Hw-v1.metric.xml,
	  tests/chroma/eig/ritz_Hw-v1.out.xml,
	  tests/chroma/gfix/coulgauge/coulgauge.ini.xml,
	  tests/chroma/gfix/coulgauge/coulgauge.metric.xml,
	  tests/chroma/gfix/coulgauge/coulgauge.out.xml,
	  tests/chroma/gfix/coulgauge/regres.pl,
	  tests/chroma/glue/fuzwilp/fuzwilp.ini.xml,
	  tests/chroma/glue/fuzwilp/fuzwilp.metric.xml,
	  tests/chroma/glue/fuzwilp/fuzwilp.out.xml,
	  tests/chroma/glue/fuzwilp/regres.pl,
	  tests/chroma/glue/wilslp/regres.pl,
	  tests/chroma/glue/wilslp/wilslp.ini.xml,
	  tests/chroma/glue/wilslp/wilslp.metric.xml,
	  tests/chroma/glue/wilslp/wilslp.out.xml,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.ini.xml,
	  tests/chroma/hadron/bar3ptfn/bar3ptfn.out.xml,
	  tests/chroma/hadron/building_blocks/bb-v2.dat.xml,
	  tests/chroma/hadron/building_blocks/bb.dat.xml,
	  tests/chroma/hadron/building_blocks/bb.ini.xml,
	  tests/chroma/hadron/building_blocks/bb.metric.xml,
	  tests/chroma/hadron/building_blocks/bb.out.xml,
	  tests/chroma/hadron/building_blocks/regres.pl,
	  tests/chroma/hadron/make_source/dilute.ini.xml,
	  tests/chroma/hadron/make_source/dilute.metric.xml,
	  tests/chroma/hadron/make_source/dilute.out.xml,
	  tests/chroma/hadron/make_source/make_source.ini.xml,
	  tests/chroma/hadron/make_source/make_source.metric.xml,
	  tests/chroma/hadron/make_source/make_source.out.xml,
	  tests/chroma/hadron/make_source/regres.pl,
	  tests/chroma/hadron/make_source/source-deriv.ini.xml,
	  tests/chroma/hadron/make_source/source-deriv.metric.xml,
	  tests/chroma/hadron/make_source/source-deriv.out.xml,
	  tests/chroma/hadron/make_source/source-displace.ini.xml,
	  tests/chroma/hadron/make_source/source-displace.metric.xml,
	  tests/chroma/hadron/make_source/source-displace.out.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.ini.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.metric.xml,
	  tests/chroma/hadron/mesonspec/mesonspec.out.xml,
	  tests/chroma/hadron/mesonspec/regres.pl,
	  tests/chroma/hadron/mres/mres.ini.xml,
	  tests/chroma/hadron/mres/mres.metric.xml,
	  tests/chroma/hadron/mres/mres.out.xml,
	  tests/chroma/hadron/mres/regres.pl,
	  tests/chroma/hadron/noisy_building_blocks/nbb.dat_0.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.dat_1.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.ini.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb.out.xml,
	  tests/chroma/hadron/propagator/prec_clover.ini.xml,
	  tests/chroma/hadron/propagator/prec_clover.metric.xml,
	  tests/chroma/hadron/propagator/prec_clover.out.xml,
	  tests/chroma/hadron/propagator/prec_dwf.ini.xml,
	  tests/chroma/hadron/propagator/prec_dwf.metric.xml,
	  tests/chroma/hadron/propagator/prec_dwf.out.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.metric.xml,
	  tests/chroma/hadron/propagator/prec_ht_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/prec_ovext.ini.xml,
	  tests/chroma/hadron/propagator/prec_ovext.metric.xml,
	  tests/chroma/hadron/propagator/prec_ovext.out.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.metric.xml,
	  tests/chroma/hadron/propagator/prec_ovlap_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.ini.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.metric.xml,
	  tests/chroma/hadron/propagator/prec_parwilson.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-smearing.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-smearing.metric.xml,
	  tests/chroma/hadron/propagator/prec_wilson-smearing.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.metric.xml,
	  tests/chroma/hadron/propagator/prec_wilson-twisted.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ferm.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ferm.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson.metric.xml,
	  tests/chroma/hadron/propagator/prec_wilson.out.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.ini.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.metric.xml,
	  tests/chroma/hadron/propagator/prec_zolo_nef.out.xml,
	  tests/chroma/hadron/propagator/regres.pl,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.ini.xml,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.metric.xml,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.ini.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.metric.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  tests/chroma/hadron/propagator/unprec_clover.ini.xml,
	  tests/chroma/hadron/propagator/unprec_clover.metric.xml,
	  tests/chroma/hadron/propagator/unprec_clover.out.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.ini.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.metric.xml,
	  tests/chroma/hadron/propagator/unprec_dwftransf.out.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.ini.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.metric.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu.out.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.ini.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.metric.xml,
	  tests/chroma/hadron/propagator/unprec_ovext.out.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.ini.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.metric.xml,
	  tests/chroma/hadron/propagator/unprec_ovlap_contfrac5d.out.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.ini.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.metric.xml,
	  tests/chroma/hadron/propagator/unprec_zolo_nef.out.xml,
	  tests/chroma/hadron/qqbar/qqbar.ini.xml,
	  tests/chroma/hadron/qqbar/qqbar.out.xml,
	  tests/chroma/hadron/qqq/qqq.ini.xml,
	  tests/chroma/hadron/qqq/qqq.out.xml,
	  tests/chroma/hadron/qqqNucNuc/qqqNucNuc.ini.xml,
	  tests/chroma/hadron/qqqNucNuc/qqqNucNuc.out.xml,
	  tests/chroma/hadron/seqsource/regres.pl,
	  tests/chroma/hadron/seqsource/seqsource-baryon.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.metric.xml,
	  tests/chroma/hadron/seqsource/seqsource-baryon.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-derivmeson.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.metric.xml,
	  tests/chroma/hadron/seqsource/seqsource-meson.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-photon.ini.xml,
	  tests/chroma/hadron/sink_smear/regres.pl,
	  tests/chroma/hadron/sink_smear/sink-deriv.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-deriv.metric.xml,
	  tests/chroma/hadron/sink_smear/sink-deriv.out.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.ini.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.metric.xml,
	  tests/chroma/hadron/sink_smear/sink-displace.out.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.ini.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.metric.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing.out.xml,
	  tests/chroma/hadron/spectrum/regres.pl,
	  tests/chroma/hadron/spectrum/spectrum-v12.ini.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.metric.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.out.xml,
	  tests/chroma/hadron/spectrumOct/regres.pl,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.ini.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.metric.xml,
	  tests/chroma/hadron/spectrumOct/spectrumOct-v11.out.xml,
	  tests/chroma/hadron_s/spectrum_s/regres.pl,
	  tests/chroma/hadron_s/spectrum_s/spectrum_s.ini.xml,
	  tests/chroma/hadron_s/spectrum_s/spectrum_s.metric.xml,
	  tests/chroma/hadron_s/spectrum_s/spectrum_s.out.xml,
	  tests/chroma/io/nersc_write_obj/nersc_write_obj.ini.xml,
	  tests/chroma/io/nersc_write_obj/nersc_write_obj.out.xml,
	  tests/chroma/io/qio_read_obj/qio_read_obj.ini.xml,
	  tests/chroma/io/qio_read_obj/qio_read_obj.out.xml,
	  tests/chroma/io/qio_write_obj/qio_write_obj.ini.xml,
	  tests/chroma/io/qio_write_obj/qio_write_obj.out.xml,
	  tests/chroma/io/szin_read_obj/szin_read_obj.ini.xml,
	  tests/chroma/io/szin_read_obj/szin_read_obj.out.xml,
	  tests/chroma/io/szin_write_obj/szin_write_obj.ini.xml,
	  tests/chroma/io/szin_write_obj/szin_write_obj.out.xml,
	  tests/chroma/smear/ape_smear/ape_smear_v2.ini.xml,
	  tests/chroma/smear/ape_smear/ape_smear_v2.out.xml,
	  tests/chroma/smear/hyp_smear/hyp_smear_v4.ini.xml,
	  tests/chroma/smear/hyp_smear/hyp_smear_v4.out.xml,
	  tests/chroma/smear/link_smear/link_smear.ini.xml,
	  tests/chroma/smear/link_smear/link_smear.metric.xml,
	  tests/chroma/smear/link_smear/link_smear.out.xml,
	  tests/chroma/smear/link_smear/regres.pl,
	  tests/chroma/smear/stout_smear/stout_smear_v2.ini.xml,
	  tests/chroma/smear/stout_smear/stout_smear_v2.out.xml,
	  tests/heatbath/b5.6_xi1_4_4_4_4,
	  tests/hmc/dbw2_bp764_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  tests/hmc/hmc.prec_1flav_dwf.xml.ini,
	  tests/hmc/hmc.prec_1flav_stout_dwf.xml.ini,
	  tests/hmc/hmc.prec_1flav_wilson.xml.ini,
	  tests/hmc/hmc.prec_3flav_dwf.xml.ini,
	  tests/hmc/hmc.prec_contfrac.xml.ini,
	  tests/hmc/hmc.prec_dwf.xml.ini,
	  tests/hmc/hmc.prec_mixed_wilson.xml.ini,
	  tests/hmc/hmc.prec_parwilson.ini.xml,
	  tests/hmc/hmc.prec_parwilson.xml.ini,
	  tests/hmc/hmc.prec_stout_dwf.xml.ini,
	  tests/hmc/hmc.prec_stout_wilson.xml.ini,
	  tests/hmc/hmc.prec_wilson.ini.xml,
	  tests/hmc/hmc.prec_wilson.metric.xml,
	  tests/hmc/hmc.prec_wilson.out.xml,
	  tests/hmc/hmc.prec_wilson.xml.ini,
	  tests/hmc/hmc.unprec_stout_dwf.xml.ini,
	  tests/hmc/hmc.unprec_stout_wilson.xml.ini,
	  tests/hmc/hmctest.in.xml,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6.xml.ini,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6_bjoo.xml.ini,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  tests/hmc/iw_b2p2_8_16_cfz_Nf3_m0p03_ls8_dt0p005.ini.xml,
	  tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini, tests/hmc/regres.pl,
	  tests/m_res4d/mres4_tanh.xml.ini,
	  tests/m_res4d/mres4_zolo_nef.xml.ini,
	  tests/m_res4d/prop_CONTFRAC_BORICI.xml.ini,
	  tests/m_res4d/prop_NEF_BORICI.linux-scalar-intel.xml,
	  tests/m_res4d/prop_NEF_BORICI.xml.ini,
	  tests/m_res4d/t_mres_4d.linux-scalar-intel.xml,
	  tests/multi_propagator/multi_propagator_zolo4_v5.linux-scalar-intel.xml,
	  tests/multi_propagator/multi_propagator_zolo4_v5.xml.ini,
	  tests/multi_propagator_comp/collect_multi_propcomp_szinev.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/collect_propcomp.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c0.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c1.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c2.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.xml.ini,
	  tests/multi_propagator_comp/run.sh,
	  tests/multi_propagator_comp/run_szinev.sh,
	  tests/parwilson/CP_PACS.config,
	  tests/parwilson/INPUT_t_propagator_twisted.xml,
	  tests/parwilson/t_propagator_twisted.xml,
	  tests/prec_twoflav_wilson_monomial/t_prec_twoflav_wilson_monomial.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c1.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c2.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_szinev_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c0.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c1.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c1.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c2.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c2.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_szinev_c0.xml.ini,
	  tests/propagator_comp/run_zolo4.sh,
	  tests/propagator_comp/run_zolo5.sh,
	  tests/propagator_w/INPUT_W.xml,
	  tests/propagator_w/t_propagator_w.xml,
	  tests/propagator_w/t_propagator_w_METRIC.xml,
	  tests/purgaug/purgaug.ini.xml, tests/purgaug/purgaug.metric.xml,
	  tests/purgaug/purgaug.out.xml, tests/purgaug/regres.pl,
	  tests/purgaug/w_plaq.xsl, tests/qpropadd/qpropadd_v1.xml.ini,
	  tests/qpropgfix/qpropgfix_v1.linux-scalar-intel.xml,
	  tests/qpropgfix/qpropgfix_v1.xml.ini,
	  tests/qproptransf/prop.xml.ini,
	  tests/qproptransf/prop_milc_102.xml.ini,
	  tests/qproptransf/qtransf_seqprop_v1.xml.ini,
	  tests/qproptransf/qtransf_seqprop_v2.linux-scalar-intel.xml,
	  tests/qproptransf/qtransf_seqprop_v2.xml.ini,
	  tests/qproptransf/seqprop.xml.ini,
	  tests/qproptransf/seqsrc.xml.ini,
	  tests/qproptransf/seqsrc_milc_102.xml.ini,
	  tests/qproptrev/qproptrev_v1.xml.ini, tests/spectrum_s/regres.pl,
	  tests/spectrum_s/spectrum_s.metric.xml,
	  tests/spectrum_s/spectrum_s.xml,
	  tests/spectrum_s/spectrum_s_reg.xml,
	  tests/spectrum_s/spectrum_s_reg_test_output.xml,
	  tests/spectrum_s/spectrum_s_test_output.xml,
	  tests/stoch_meson/create_chroma_xml.csh,
	  tests/stoch_meson/create_chroma_xml_eo.csh,
	  tests/stoch_meson/stoch_meson.eo.ini.xml,
	  tests/stoch_meson/stoch_meson.ini.xml,
	  tests/stoch_meson/stoch_meson.out.xml,
	  tests/t_ape_smear/t_ape_smear.linux-scalar-intel.xml,
	  tests/t_asqtad_prop/DATA, tests/t_asqtad_prop/DATA_v2,
	  tests/t_asqtad_prop/DISC_DATA_v2,
	  tests/t_asqtad_prop/DISC_XMLDAT.reference,
	  tests/t_asqtad_prop/INPUT_t_propagator_fuzz_s,
	  tests/t_asqtad_prop/XMLDAT.reference,
	  tests/t_asqtad_prop/t_disc_loop_s.xml,
	  tests/t_asqtad_prop/t_disc_loop_s_METRIC.xml,
	  tests/t_asqtad_prop/t_nersc.cfg,
	  tests/t_asqtad_prop/t_propagator_fuzz_s.xml,
	  tests/t_asqtad_prop/t_propagator_fuzz_s_METRIC.xml,
	  tests/t_asqtad_prop/t_propagator_s.xml,
	  tests/t_asqtad_prop/t_propagator_s_METRIC.xml,
	  tests/t_dwf4d/t_dwf4d.xml.ini,
	  tests/t_dwf4d/t_dwf4d_ovdwf_v1.linux-scalar-intel.xml,
	  tests/t_dwf4d/t_dwf4d_ovdwf_v1.xml.ini,
	  tests/t_g5eps_bj/t_g5eps_bj.xml.ini,
	  tests/t_gmresr/t_rel_gmresr.xml.ini,
	  tests/t_hamiltonian/t_hamiltonian.xml.ini,
	  tests/t_leapfrog/regres.pl,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.metric.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.ini.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.metric.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_minimal_norm_2nd_qpq_integrator_mts.ini.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.ini.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.metric.xml,
	  tests/t_leapfrog/t_leapfrog.parwilson_pqp_integrator_mts.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_hasenbusch_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_parwilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_parwilson.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_parwilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.prec_polynomial_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.metric.xml,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_clover.ini.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_clover.metric.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_clover.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.ini.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.metric.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.metric.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.out.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.metric.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.out.xml,
	  tests/t_lwldslash_sse/input.xml,
	  tests/t_lwldslash_sse/t_lwldslash_array_input.xml,
	  tests/t_msumr/t_msumr.xml.ini,
	  tests/t_msumr/t_msumr.xml.linux-scalar-intel,
	  tests/t_ov_pbp/DATA, tests/t_ov_pbp/README,
	  tests/t_ovlap5d_bj/DATA.ini,
	  tests/t_ovlap5d_bj/t_ovlap5d.xml.out, tests/t_ovlap_bj/DATA,
	  tests/t_ovlap_bj/eigenvector.xml,
	  tests/t_ovlap_bj/eigenvector_000,
	  tests/t_ovlap_bj/eigenvector_001,
	  tests/t_ovlap_bj/eigenvector_002,
	  tests/t_ovlap_bj/eigenvector_003,
	  tests/t_ovlap_bj/eigenvector_004,
	  tests/t_ovlap_bj/eigenvector_005,
	  tests/t_ovlap_bj/eigenvector_006,
	  tests/t_ovlap_bj/eigenvector_007,
	  tests/t_ovlap_bj/eigenvector_008,
	  tests/t_ovlap_bj/eigenvector_009,
	  tests/t_ovlap_bj/eigenvector_010,
	  tests/t_ovlap_bj/eigenvector_011, tests/t_ovlap_bj/t_ovlap.xml,
	  tests/t_prec_contfrac/t_prec_contfrac.xml.ini,
	  tests/t_precact/t_prec_nef.xml.ini,
	  tests/t_precact/t_precact.clover.ini.xml,
	  tests/t_precact/t_precact.prec_contfrac.xml.ini,
	  tests/t_precact/t_precact.prec_dwf.xml.ini,
	  tests/t_precact/t_precact.prec_ht_contfrac.xml.ini,
	  tests/t_precact/t_precact.prec_zolo_nef.xml.ini,
	  tests/t_ritz/DATA_rest_read, tests/t_ritz/README,
	  tests/t_ritz/t_ritz.xml.in, tests/t_ritz/t_ritz.xml.out,
	  tests/t_ritz/t_ritz5d_KS.xml.in,
	  tests/t_ritz/t_ritz5d_KS.xml.out, tests/t_ritz/t_ritz_KS.xml.in,
	  tests/t_ritz/t_ritz_KS.xml.out,
	  tests/t_stout_state/t_stout_state.xml.ini,
	  tests/t_sumr/t_sumr.xml.ini,
	  tests/t_unit_tests/t_lower_tests.xml,
	  tests/t_unit_tests/t_lower_tests_METRIC.xml,
	  tests/unprec_twoflav_wilson_monomial/t_unprec_twoflav_wilson_monomial.xml.ini,
	  tests/wallformfac/make_source_pt_v5.linux-scalar-intel.xml,
	  tests/wallformfac/make_source_wl_v5.linux-scalar-intel.xml,
	  tests/wallformfac/prop_pt_v6.linux-scalar-intel.xml,
	  tests/wallformfac/prop_wl_v6.linux-scalar-intel.xml,
	  tests/wallformfac/spectrum_pt_v10.linux-scalar-intel.xml,
	  tests/wallformfac/spectrum_wl_v10.linux-scalar-intel.xml,
	  tests/wallformfac/test_wallformfac_v1.csh,
	  tests/wallformfac/test_wallformfac_v2.csh,
	  tests/wallformfac/test_wallformfac_v3.csh,
	  tests/wallformfac/test_wallformfac_zolo4d_v1.csh,
	  tests/wallformfac/wallformfac_v1.linux-scalar-intel.xml: Major
	  overhaul of fermion and gauge action interface. Basically, all
	  fermacts and gaugeacts now carry out	<T,P,Q>  template
	  parameters. These are the fermion type, the "P" - conjugate
	  momenta, and "Q" - generalized coordinates in the sense of
	  Hamilton's equations. The fermbc's have been rationalized to
	  never be over multi1d<T>. The "createState" within the
	  FermionAction is now fixed meaning the "u" fields are now from
	  the coordinate type. There are now "ConnectState" that derive
	  into FermState<T,P,Q> and GaugeState<P,Q>.

2006-04-03 00:51  edwards

	* aclocal.m4: Induced changes.

2006-04-03 00:51  edwards

	* lib/Makefile.am: Added new fermstate and gaugestate stuff.

2006-04-03 00:50  edwards

	* configure.ac: Changed to version 3.0

2006-03-28 00:12  edwards

	* lib/meas/inline/io/default_gauge_field.cc: Added check of
	  default_gauge_field  before reset.

2006-03-28 00:11  edwards

	* lib/named_obj.h: Added check of id.

2006-03-24 17:26  tag chroma2-15-3

2006-03-24 17:26  edwards

	* lib/meas/inline/io/szin_read_obj_funcmap.cc: Removed debugging.

2006-03-24 17:18  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-24 17:17  edwards

	* NEWS: Info on 2.15.3

2006-03-24 17:17  edwards

	* configure.ac: Changed to 2.15.3

2006-03-24 17:16  edwards

	* lib/: funcmap.h, meas/inline/io/default_gauge_field.cc,
	  meas/inline/io/inline_gaussian_obj.cc,
	  meas/inline/io/inline_qio_read_obj.cc,
	  meas/inline/io/inline_qio_write_erase_obj.cc,
	  meas/inline/io/inline_qio_write_obj.cc,
	  meas/inline/io/inline_szin_read_obj.cc,
	  meas/inline/io/inline_szin_write_obj.cc,
	  meas/inline/io/inline_xml_write_obj.cc,
	  meas/inline/io/qio_read_obj_funcmap.cc,
	  meas/inline/io/qio_read_obj_funcmap.h,
	  meas/inline/io/qio_write_obj_funcmap.cc,
	  meas/inline/io/qio_write_obj_funcmap.h,
	  meas/inline/io/szin_read_obj_funcmap.cc,
	  meas/inline/io/szin_read_obj_funcmap.h,
	  meas/inline/io/szin_write_obj_funcmap.cc,
	  meas/inline/io/szin_write_obj_funcmap.h,
	  meas/inline/io/xml_write_obj_funcmap.cc,
	  meas/inline/io/xml_write_obj_funcmap.h: OOoohh, a nasty one. Put
	  a disambiguator on the funcmap to force the multiple funcmaps to
	  be a different type. The point is void (*)(string, string) used
	  in the XML writer, SZIN reader/writer, QIO reader/writer are all
	  the same types. The funcmap therefore is the same type for all
	  these different readers/writers. That's bad. If we had a Class,
	  then that would be a unique type disambiguator. So, we invent
	  some kludgy Trait disambiguator (normally just a struct buried in
	  a namespace) to aide as the disambiguator on the template
	  parameters.

2006-03-21 14:19  tag chroma2-15-2

2006-03-21 14:19  edwards

	* tests/chroma/hadron/propagator/unprec_zolo_nef.metric.xml: Lower
	  accuracy of tests.

2006-03-21 14:14  edwards

	* lib/: actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  util/gauge/gauge_startup.h: Narrow down some includes within
	  enum_io. Now must pick up cfgtype_io.h

2006-03-21 14:13  edwards

	* lib/Makefile.am: Added cfgtype_io

2006-03-21 14:13  edwards

	* lib/io/: cfgtype_io.cc, cfgtype_io.h, eigen_io.h, io.h,
	  param_io.cc, param_io.h: Split off cfg_t to its own file. Tried
	  to narrow down includes from enum_io

2006-03-21 14:11  edwards

	* lib/io/: hamiltonian_io.h, monomial_io.h: Added doxygen comments.

2006-03-21 14:00  edwards

	* NEWS: Info on 2.15.2

2006-03-21 13:32  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-21 13:31  edwards

	* NEWS: Info on 2.15.2

2006-03-21 13:29  edwards

	* configure.ac: Changed to version 2.15.2

2006-03-21 13:28  edwards

	* lib/meas/smear/deriv_quark_displacement_w.cc: Bug fixes! Was
	  missing lots of Gamma(4)*Gamma(5) at the end of loops.

2006-03-21 10:48  edwards

	* tests/chroma/hadron/propagator/unprec_zolo_nef.out.xml: Updated
	  test.

2006-03-21 10:46  edwards

	* tests/chroma/hadron/propagator/unprec_zolo_nef.ini.xml: Changed
	  RsdCG.

2006-03-20 23:46  edwards

	* tests/propagator/: propagator_ovdwf_v7.linux-scalar-intel.xml,
	  propagator_prec_dwf_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_contfrac5d_tanh_b1c1_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_contfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_partfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_partfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_partfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_unprec_ht_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  propagator_unprec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_unprec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_unprec_tanh_nef_v7.linux-scalar-intel.xml,
	  propagator_v7.linux-scalar-intel.xml,
	  propagator_zolo4d_v7.linux-scalar-intel.xml,
	  propagator_zolo_dwftransf4d_v7.linux-scalar-intel.xml,
	  propagator_ovdwf_v7.xml.ini, propagator_prec_dwf_v7.xml.ini,
	  propagator_prec_ht_contfrac5d_tanh_b1c1_v7.xml.ini,
	  propagator_prec_ht_contfrac5d_tanh_v7.xml.ini,
	  propagator_prec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  propagator_prec_ht_contfrac5d_zolo_v7.xml.ini,
	  propagator_prec_ht_partfrac5d_tanh_v7.xml.ini,
	  propagator_prec_ht_partfrac5d_zolo_b1c1_v7.xml.ini,
	  propagator_prec_ht_partfrac5d_zolo_v7.xml.ini,
	  propagator_prec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  propagator_prec_ovlap_contfrac5d_zolo_v7.xml.ini,
	  propagator_prec_tanh_nef_v7.xml.ini,
	  propagator_prec_zolo_nef_b1c1_v7.xml.ini,
	  propagator_prec_zolo_nef_v7.xml.ini,
	  propagator_unprec_ht_contfrac5d_tanh_v7.xml.ini,
	  propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  propagator_unprec_ht_contfrac5d_zolo_v7.xml.ini,
	  propagator_unprec_ovext_v7.xml.ini,
	  propagator_unprec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  propagator_unprec_tanh_nef_v7.xml.ini, propagator_v7.xml.ini,
	  propagator_zolo4d_v7.xml.ini,
	  propagator_zolo_dwftransf4d_v7.xml.ini: Removed old inputs.

2006-03-20 23:45  tag chroma2-15-1

2006-03-20 23:45  edwards

	* NEWS: Info on 2.15.1

2006-03-20 23:43  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-20 23:43  edwards

	* configure.ac: Changed to 2.15.1

2006-03-20 23:42  edwards

	* lib/actions/ferm/fermacts/:
	  prec_ht_contfrac5d_fermact_array_w.cc,
	  prec_ht_contfrac5d_fermact_array_w.h,
	  prec_kno_fermact_array_w.cc, prec_kno_fermact_array_w.h,
	  prec_ovlap_contfrac5d_fermact_array_w.cc,
	  prec_ovlap_contfrac5d_fermact_array_w.h,
	  prec_zolo_nef_fermact_array_w.cc,
	  prec_zolo_nef_fermact_array_w.h,
	  unprec_zolo_nef_fermact_array_w.cc,
	  unprec_zolo_nef_fermact_array_w.h: Removed use of overlap_state
	  and instead use the default createState.

2006-03-20 22:47  edwards

	* tests/chroma/hadron/propagator/: prec_ovext.ini.xml,
	  prec_ovext.metric.xml, prec_ovext.out.xml, regres.pl,
	  unprec_ovext.ini.xml, unprec_ovext.metric.xml,
	  unprec_ovext.out.xml: More regression tests.

2006-03-20 22:31  edwards

	* tests/chroma/hadron/propagator/: regres.pl,
	  unprec_dwftransf.ini.xml, unprec_dwftransf.metric.xml,
	  unprec_dwftransf.out.xml: More regression tests.

2006-03-20 22:18  edwards

	* tests/chroma/hadron/propagator/: prec_zolo_nef.ini.xml,
	  prec_zolo_nef.out.xml, regres.pl, unprec_zolo_nef.ini.xml,
	  unprec_zolo_nef.metric.xml, unprec_zolo_nef.out.xml: Updated and
	  added more regression tests.

2006-03-20 22:14  edwards

	* tests/chroma/hadron/propagator/: prec_zolo_nef.ini.xml,
	  prec_zolo_nef.metric.xml, prec_zolo_nef.out.xml, regres.pl: More
	  regression tests.

2006-03-20 22:09  edwards

	* tests/chroma/hadron/propagator/: prec_clover.ini.xml,
	  prec_clover.out.xml, prec_dwf.ini.xml, prec_dwf.out.xml,
	  prec_ht_contfrac5d.ini.xml, prec_ht_contfrac5d.metric.xml,
	  prec_ht_contfrac5d.out.xml, prec_ovlap_contfrac5d.ini.xml,
	  prec_ovlap_contfrac5d.metric.xml, prec_ovlap_contfrac5d.out.xml,
	  prec_parwilson.ini.xml, prec_parwilson.out.xml,
	  prec_wilson-smearing.ini.xml, prec_wilson-smearing.out.xml,
	  prec_wilson-twisted.ini.xml, prec_wilson-twisted.out.xml,
	  prec_wilson.ferm.ini.xml, prec_wilson.ini.xml,
	  prec_wilson.out.xml, regres.pl, unprec-ovlap-zolo4d.ini.xml,
	  unprec-ovlap-zolo4d.out.xml, unprec-zolo-ev-multi.out.xml,
	  unprec_clover.ini.xml, unprec_clover.out.xml,
	  unprec_hamberwu.ini.xml, unprec_hamberwu.out.xml,
	  unprec_ovlap_contfrac5d.ini.xml,
	  unprec_ovlap_contfrac5d.metric.xml,
	  unprec_ovlap_contfrac5d.out.xml: Updated and added more
	  regression tests.

2006-03-20 12:44  edwards

	* lib/eo_prec_linop.h: Added doxygen comments.

2006-03-20 00:58  tag chroma2-15-0

2006-03-20 00:58  edwards

	* tests/chroma/hadron/propagator/: prec_wilson-smearing.ini.xml,
	  prec_wilson-smearing.metric.xml, prec_wilson-smearing.out.xml,
	  regres.pl: Added new smearing tests.

2006-03-20 00:51  edwards

	* NEWS: Info on 2.15.0

2006-03-20 00:48  edwards

	* tests/chroma/hadron/propagator/: prec_wilson-twisted.ini.xml,
	  prec_wilson-twisted.out.xml: Fixed again.

2006-03-20 00:46  edwards

	* tests/spectrum_s/spectrum_s_reg_test_output.xml: Updated
	  regression test using new default gauge field.

2006-03-20 00:31  edwards

	* tests/chroma/hadron_s/: spectrum_s/spectrum_s.out.xml,
	  spectrum_s.ini.xml: Updated.

2006-03-20 00:27  edwards

	* tests/chroma/: hadron/qqbar/qqbar.ini.xml,
	  hadron/qqbar/qqbar.out.xml, hadron/qqq/qqq.ini.xml,
	  hadron/qqq/qqq.out.xml, smear/link_smear/link_smear.out.xml:
	  Updated.

2006-03-20 00:21  edwards

	* tests/chroma/hadron/: make_source/dilute.out.xml,
	  make_source/make_source.ini.xml, make_source/make_source.out.xml,
	  make_source/source-deriv.out.xml,
	  make_source/source-displace.ini.xml,
	  make_source/source-displace.out.xml, mesonspec/mesonspec.out.xml,
	  mres/mres.ini.xml, mres/mres.out.xml: Updated.

2006-03-20 00:11  edwards

	* tests/chroma/hadron/building_blocks/: bb.dat.xml, bb.ini.xml,
	  bb.out.xml: Updated to new sources.

2006-03-20 00:09  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn.ini.xml,
	  bar3ptfn.out.xml: Updated

2006-03-19 23:58  edwards

	* tests/chroma/hadron/seqsource/: seqsource-baryon-v1.ini.xml,
	  seqsource-baryon-v1.metric.xml, seqsource-baryon-v1.out.xml:
	  renamed

2006-03-19 23:57  edwards

	* tests/chroma/hadron/building_blocks/: bb.dat.xml, bb.ini.xml,
	  bb.out.xml: Updated.

2006-03-19 23:53  edwards

	* tests/chroma/hadron/noisy_building_blocks/: nbb-v1.dat_0.xml,
	  nbb-v1.dat_1.xml, nbb.dat_0.xml, nbb.dat_1.xml, nbb.out.xml:
	  Updated.

2006-03-19 23:50  edwards

	* tests/chroma/hadron/: seqsource/regres.pl,
	  seqsource/seqsource-baryon.ini.xml,
	  seqsource/seqsource-baryon.metric.xml,
	  seqsource/seqsource-baryon.out.xml,
	  seqsource/seqsource-derivmeson-v2.ini.xml,
	  seqsource/seqsource-derivmeson.ini.xml,
	  seqsource/seqsource-meson-v1.ini.xml,
	  seqsource/seqsource-meson-v1.metric.xml,
	  seqsource/seqsource-meson-v1.out.xml,
	  seqsource/seqsource-meson.ini.xml,
	  seqsource/seqsource-meson.metric.xml,
	  seqsource/seqsource-meson.out.xml,
	  seqsource/seqsource-photon-v2.ini.xml,
	  seqsource/seqsource-photon.ini.xml, sink_smear/regres.pl,
	  sink_smear/sink-deriv.out.xml, sink_smear/sink-displace.out.xml,
	  sink_smear/sink_smearing-v5.ini.xml,
	  sink_smear/sink_smearing-v5.metric.xml,
	  sink_smear/sink_smearing-v5.out.xml,
	  sink_smear/sink_smearing.ini.xml,
	  sink_smear/sink_smearing.metric.xml,
	  sink_smear/sink_smearing.out.xml, spectrum/spectrum-v12.out.xml,
	  spectrumOct/spectrumOct-v11.out.xml: Updated tests.

2006-03-19 23:41  edwards

	* tests/chroma/hadron/: building_blocks/bb-v2.dat.xml,
	  building_blocks/bb-v2.ini.xml, building_blocks/bb-v2.metric.xml,
	  building_blocks/bb-v2.out.xml, building_blocks/bb.ini.xml,
	  building_blocks/bb.metric.xml, building_blocks/bb.out.xml,
	  building_blocks/regres.pl, mesonspec/mesonspec.out.xml,
	  mres/mres-v1.ini.xml, mres/mres-v1.metric.xml,
	  mres/mres-v1.out.xml, mres/mres.ini.xml, mres/mres.metric.xml,
	  mres/mres.out.xml, mres/regres.pl,
	  noisy_building_blocks/nbb-v1.ini.xml,
	  noisy_building_blocks/nbb-v1.out.xml,
	  noisy_building_blocks/nbb.ini.xml,
	  noisy_building_blocks/nbb.out.xml, qqq/qqq-v4.ini.xml,
	  qqq/qqq-v4.out.xml, qqq/qqq.ini.xml, qqq/qqq.out.xml,
	  qqqNucNuc/qqqNucNuc-v1.ini.xml, qqqNucNuc/qqqNucNuc-v1.out.xml,
	  qqqNucNuc/qqqNucNuc.ini.xml, qqqNucNuc/qqqNucNuc.out.xml: Updated
	  tests.

2006-03-19 23:29  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn-v6.ini.xml,
	  bar3ptfn-v6.out.xml, bar3ptfn.ini.xml, bar3ptfn.out.xml: Moved
	  around files.

2006-03-19 23:25  edwards

	* tests/chroma/hadron/: make_source/make_source-v6.ini.xml,
	  make_source/make_source-v6.metric.xml,
	  make_source/make_source-v6.out.xml,
	  make_source/make_source.ini.xml,
	  make_source/make_source.metric.xml,
	  make_source/make_source.out.xml, make_source/regres.pl,
	  qqbar/qqbar-v4.ini.xml, qqbar/qqbar-v4.out.xml,
	  qqbar/qqbar.ini.xml, qqbar/qqbar.out.xml: Moved around files.

2006-03-19 23:24  edwards

	* tests/chroma/hadron/propagator/: prec_clover-v9.ini.xml,
	  prec_clover-v9.metric.xml, prec_clover-v9.out.xml,
	  prec_dwf-v9.ini.xml, prec_dwf-v9.metric.xml, prec_dwf-v9.out.xml,
	  prec_parwilson-v9.ini.xml, prec_parwilson-v9.metric.xml,
	  prec_parwilson-v9.out.xml, prec_wilson-twisted-v9.ini.xml,
	  prec_wilson-twisted-v9.metric.xml,
	  prec_wilson-twisted-v9.out.xml, prec_wilson-v9.ferm.ini.xml,
	  prec_wilson-v9.ferm.out.xml, prec_wilson-v9.ini.xml,
	  prec_wilson-v9.metric.xml, prec_wilson-v9.out.xml,
	  unprec-ovlap-zolo4d-v9.ini.xml,
	  unprec-ovlap-zolo4d-v9.metric.xml,
	  unprec-ovlap-zolo4d-v9.out.xml, unprec-zolo-ev-multi-v8.ini.xml,
	  unprec-zolo-ev-multi-v8.metric.xml,
	  unprec-zolo-ev-multi-v8.out.xml, unprec_clover-v9.ini.xml,
	  unprec_clover-v9.metric.xml, unprec_clover-v9.out.xml,
	  unprec_hamberwu-v9.ini.xml, unprec_hamberwu-v9.metric.xml,
	  unprec_hamberwu-v9.out.xml: Moved around filenames.

2006-03-19 23:23  edwards

	* tests/chroma/: eig/ritz_Hw-v1.out.xml,
	  gfix/coulgauge/coulgauge.out.xml,
	  hadron/make_source/dilute.out.xml,
	  hadron/make_source/make_source-v6.out.xml,
	  hadron/make_source/source-deriv.out.xml,
	  hadron/make_source/source-displace.out.xml,
	  hadron/propagator/prec_clover.ini.xml,
	  hadron/propagator/prec_clover.metric.xml,
	  hadron/propagator/prec_clover.out.xml,
	  hadron/propagator/prec_dwf.ini.xml,
	  hadron/propagator/prec_dwf.metric.xml,
	  hadron/propagator/prec_dwf.out.xml,
	  hadron/propagator/prec_parwilson.ini.xml,
	  hadron/propagator/prec_parwilson.metric.xml,
	  hadron/propagator/prec_parwilson.out.xml,
	  hadron/propagator/prec_wilson-twisted.ini.xml,
	  hadron/propagator/prec_wilson-twisted.metric.xml,
	  hadron/propagator/prec_wilson-twisted.out.xml,
	  hadron/propagator/prec_wilson.ferm.ini.xml,
	  hadron/propagator/prec_wilson.ferm.out.xml,
	  hadron/propagator/prec_wilson.ini.xml,
	  hadron/propagator/prec_wilson.metric.xml,
	  hadron/propagator/prec_wilson.out.xml,
	  hadron/propagator/regres.pl,
	  hadron/propagator/unprec-ovlap-zolo4d.ini.xml,
	  hadron/propagator/unprec-ovlap-zolo4d.metric.xml,
	  hadron/propagator/unprec-ovlap-zolo4d.out.xml,
	  hadron/propagator/unprec-zolo-ev-multi.ini.xml,
	  hadron/propagator/unprec-zolo-ev-multi.metric.xml,
	  hadron/propagator/unprec-zolo-ev-multi.out.xml,
	  hadron/propagator/unprec_clover.ini.xml,
	  hadron/propagator/unprec_clover.metric.xml,
	  hadron/propagator/unprec_clover.out.xml,
	  hadron/propagator/unprec_hamberwu.ini.xml,
	  hadron/propagator/unprec_hamberwu.metric.xml,
	  hadron/propagator/unprec_hamberwu.out.xml: Updates of tests.

2006-03-19 23:22  edwards

	* mainprogs/main/: chroma.cc, hmc.cc, purgaug.cc, qpropqio.cc,
	  spectrum_s.cc: Switched over inline measurements to pushing the
	  gauge field into a default NamedObject buffer.

2006-03-19 23:22  edwards

	* lib/meas/inline/: abs_inline_measurement.h,
	  abs_inline_measurement_factory.h, inline.h,
	  eig/inline_eigbnds.cc, eig/inline_eigbnds.h,
	  eig/inline_ritz_H_w.cc, eig/inline_ritz_H_w.h,
	  gfix/inline_coulgauge.cc, gfix/inline_coulgauge.h,
	  glue/inline_fuzwilp.cc, glue/inline_fuzwilp.h,
	  glue/inline_plaquette.cc, glue/inline_plaquette.h,
	  glue/inline_polylp.cc, glue/inline_polylp.h,
	  glue/inline_wilslp.cc, glue/inline_wilslp.h,
	  hadron/inline_bar3ptfn_w.cc, hadron/inline_bar3ptfn_w.h,
	  hadron/inline_building_blocks_w.cc,
	  hadron/inline_building_blocks_w.h, hadron/inline_hadspec_w.cc,
	  hadron/inline_hadspec_w.h, hadron/inline_make_source_ferm_w.cc,
	  hadron/inline_make_source_ferm_w.h,
	  hadron/inline_make_source_w.cc, hadron/inline_make_source_w.h,
	  hadron/inline_mesonspec_w.cc, hadron/inline_mesonspec_w.h,
	  hadron/inline_mres_w.cc, hadron/inline_mres_w.h,
	  hadron/inline_multi_propagator_w.cc,
	  hadron/inline_multi_propagator_w.h, hadron/inline_multipole_w.cc,
	  hadron/inline_multipole_w.h,
	  hadron/inline_noisy_building_blocks_w.cc,
	  hadron/inline_noisy_building_blocks_w.h,
	  hadron/inline_propagator_ferm_w.cc,
	  hadron/inline_propagator_ferm_w.h, hadron/inline_propagator_w.cc,
	  hadron/inline_propagator_w.h, hadron/inline_qpropadd_w.cc,
	  hadron/inline_qpropadd_w.h, hadron/inline_qpropqio_w.cc,
	  hadron/inline_qpropqio_w.h, hadron/inline_qqbar_w.cc,
	  hadron/inline_qqbar_w.h, hadron/inline_qqqNucNuc_w.cc,
	  hadron/inline_qqqNucNuc_w.h, hadron/inline_qqq_w.cc,
	  hadron/inline_qqq_w.h, hadron/inline_seqsource_w.cc,
	  hadron/inline_seqsource_w.h, hadron/inline_sink_smear_w.cc,
	  hadron/inline_sink_smear_w.h, hadron/inline_spectrumOct_w.cc,
	  hadron/inline_spectrumOct_w.h, hadron/inline_spectrum_w.cc,
	  hadron/inline_spectrum_w.h, hadron_s/inline_spectrum_s.cc,
	  hadron_s/inline_spectrum_s.h, io/default_gauge_field.cc,
	  io/default_gauge_field.h, io/inline_erase_obj.cc,
	  io/inline_erase_obj.h, io/inline_gaussian_obj.cc,
	  io/inline_gaussian_obj.h, io/inline_list_obj.cc,
	  io/inline_list_obj.h, io/inline_nersc_write_obj.cc,
	  io/inline_nersc_write_obj.h, io/inline_qio_read_obj.cc,
	  io/inline_qio_read_obj.h, io/inline_qio_write_erase_obj.cc,
	  io/inline_qio_write_erase_obj.h, io/inline_qio_write_obj.cc,
	  io/inline_qio_write_obj.h, io/inline_snarf_obj.cc,
	  io/inline_snarf_obj.h, io/inline_szin_read_obj.cc,
	  io/inline_szin_read_obj.h, io/inline_szin_write_obj.cc,
	  io/inline_szin_write_obj.h, io/inline_xml_write_obj.cc,
	  io/inline_xml_write_obj.h, io/io.h, smear/inline_ape_smear.cc,
	  smear/inline_ape_smear.h, smear/inline_hyp_smear.cc,
	  smear/inline_hyp_smear.h, smear/inline_link_smear.cc,
	  smear/inline_link_smear.h, smear/inline_stout_smear.cc,
	  smear/inline_stout_smear.h: Switched inline measurements from
	  gauge field argument to reading an optional default gauge field.

2006-03-19 23:21  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc: Moved in
	  obsolete read of ChiralParam from lib/io/param_io.h

2006-03-19 23:20  edwards

	* lib/io/: param_io.cc, param_io.h: Cleaned out the ChiralParam
	  stuff and moved to prec-dwf fermact.

2006-03-19 23:18  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-19 23:17  edwards

	* lib/Makefile.am: Added default_gauge_field.{h,cc}

2006-03-19 23:17  edwards

	* configure.ac: Changed to 2.15.0 .

2006-03-17 11:59  tag chroma2-14-0

2006-03-17 11:59  edwards

	* lib/actions/ferm/fermbcs/schr_sf_fermbc_w.h: Ooops. Removed
	  explicit SchrSFFermBC  stuck in front of initBnd().

2006-03-16 21:07  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-16 21:06  edwards

	* configure.ac: Changed to 2.14.0

2006-03-16 21:05  edwards

	* lib/update/molecdyn/monomial/: one_flavor_rat_monomial5d_w.h,
	  one_flavor_rat_monomial_w.h, two_flavor_hasenbusch_monomial_w.h,
	  two_flavor_monomial5d_w.h, two_flavor_polynomial_monomial_w.h,
	  two_flavor_polyprec_monomial_w.h: Added modifyF to all heatbaths
	  to account for BC's.

2006-03-16 21:05  edwards

	* scripts/run_chroma_xmldiff.pl: Changed formatting of output -
	  want the Conclusions to show up more nicely.

2006-03-16 20:39  edwards

	* lib/update/molecdyn/monomial/two_flavor_monomial_w.h: Put in
	  required modifyF in heatbath but also have unwanted fermbc.zero()
	  call in dsdq.

2006-03-16 20:38  edwards

	* NEWS: Info on 2.14.0

2006-03-16 12:20  edwards

	* lib/Makefile.am: Added schroedinger_fermbc_w.h

2006-03-15 22:00  edwards

	* lib/actions/ferm/fermbcs/: fermbc_factory_s.h,
	  fermbc_factory_w.h, fermbcs.h, fermbcs_aggregate_s.h,
	  fermbcs_aggregate_w.cc, fermbcs_aggregate_w.h,
	  fermbcs_reader_s.h, fermbcs_reader_w.h, periodic_fermbc.h,
	  periodic_fermbc_w.h, schr1link_fermbc_w.cc, schr1link_fermbc_w.h,
	  schr2link_fermbc_w.cc, schr2link_fermbc_w.h,
	  schr_chromomag_fermbc_w.cc, schr_chromomag_fermbc_w.h,
	  schr_coupling_fermbc_w.cc, schr_coupling_fermbc_w.h,
	  schr_dirich_fermbc_w.cc, schr_dirich_fermbc_w.h,
	  schr_fermbc_params.cc, schr_fermbc_params.h,
	  schr_fermbc_params_w.cc, schr_fermbc_params_w.h,
	  schr_nonpert_fermbc_w.cc, schr_nonpert_fermbc_w.h,
	  schr_sf_fermbc_w.cc, schr_sf_fermbc_w.h, schr_triv_fermbc_w.cc,
	  schr_triv_fermbc_w.h, schroedinger_fermbc_w.h, simple_fermbc.h,
	  simple_fermbc_s.h, simple_fermbc_w.h, twisted_fermbc_w.h: Added a
	  slew of new schroedinger fermbcs. Changed doxygen group name from
	  "fermbc" to "fermbcs" to be more like gaugebcs name. Removed
	  obsolete schr1link_*.{h,cc} files.

2006-03-15 21:59  edwards

	* lib/actions/gauge/gaugebcs/: schr_chromomag_gaugebc.h,
	  schr_coupling_gaugebc.h, schr_dirich_gaugebc.h,
	  schr_nonpert_gaugebc.h, schr_triv_gaugebc.h,
	  schroedinger_gaugebc.cc, schroedinger_gaugebc.h: Unprotected
	  lSFmask() and SFBndFld() functions

2006-03-15 21:58  edwards

	* lib/Makefile.am: Added a slew of schroedinger functional fermbcs

2006-03-15 21:57  edwards

	* lib/gaugebc.h: Changed dummy argument name - just for
	  informational purposes.

2006-03-15 21:57  edwards

	* lib/fermbc.h: Added a zero() function

2006-03-15 21:56  edwards

	* tests/chroma/hadron_s/spectrum_s/spectrum_s.out.xml: Updated
	  tests yet again.

2006-03-15 10:43  edwards

	* tests/chroma/hadron_s/spectrum_s/spectrum_s.out.xml: Updated
	  regression test.

2006-03-14 14:40  mcneile

	* tests/spectrum_s/spectrum_s_reg_test_output.xml: Updated output
	  to fix regression test failure.

2006-03-13 23:55  edwards

	* lib/meas/inline/io/: inline_io_aggregate.cc,
	  inline_xml_write_obj.cc, inline_xml_write_obj.h,
	  xml_write_obj_funcmap.cc, xml_write_obj_funcmap.h: Added XML
	  writers.

2006-03-13 23:54  edwards

	* lib/io/enum_io/enum_io.h: Obsolesced gaugebc_io

2006-03-13 23:54  edwards

	* lib/io/enum_io/enum_gaugebc_io.h: Deprecated enum_gaugebc_io

2006-03-13 23:53  edwards

	* lib/actions/ferm/fermbcs/: schr_fermbc_params.cc,
	  schr_fermbc_params.h: Removed schrfuntype and enum_gaugebc_io

2006-03-13 23:53  edwards

	* lib/gaugebc.h: Removed include of enum_gaugebc_io.h

2006-03-13 23:51  edwards

	* lib/Makefile.am: Added schr chromomag and dirich. Removed
	  enum_gaugebc_io.*

2006-03-13 23:49  edwards

	* lib/actions/gauge/gaugebcs/: gaugebc_aggregate.cc, gaugebcs.h,
	  schr_chromomag_gaugebc.cc, schr_chromomag_gaugebc.h,
	  schr_dirich_gaugebc.cc, schr_dirich_gaugebc.h,
	  schr_gaugebc_params.h: More gaugebc stuff.

2006-03-13 10:25  edwards

	* lib/actions/ferm/fermbcs/fermbcs.h: Commented out schroedinger
	  includes

2006-03-13 09:56  egregory

	* lib/meas/hadron/pseudoscalar_stoch_conn_s.cc: added brief
	  documentation

2006-03-13 09:43  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: added call to
	  function ks_local_loops_and_stoch_conn() and related
	  infrastructure

2006-03-13 09:40  egregory

	* lib/meas/hadron/pseudoscalar_stoch_conn_s.cc: code for 4-link
	  taste-singlet pseudoscalar connected correlator measurements.

2006-03-13 09:39  egregory

	* lib/meas/hadron/pseudoscalar_stoch_conn_s.h: class for 4-link
	  pseudoscalar tatse sinbglet stochastic connected correlator
	  measurement.

2006-03-13 09:37  egregory

	* lib/meas/hadron/stoch_conn_s.h: class for stochastic connected
	  correlators measurements

2006-03-13 09:35  egregory

	* lib/meas/hadron/ks_local_loops.h:  added prototype for
	  ks_local_loops_and_stoch_conn()

2006-03-13 09:34  egregory

	* lib/meas/hadron/ks_local_loops.cc: added function
	  ks_local_loops_and_stoch_conn() to do diagnostic stochastic
	  connected correlators of 4-link taste-singlet pion.

2006-03-13 09:32  egregory

	* lib/meas/hadron/hadron_s.h: added include for
	  pseudoscalar_stoch_conn_s.h

2006-03-13 09:28  egregory

	* lib/Makefile.am: added 3 lines relevant to stochastic connected
	  correlators

2006-03-13 00:19  edwards

	* lib/actions/: ferm/fermbcs/fermbcs_aggregate_w.cc,
	  gauge/gaugebcs/gaugebc_aggregate.cc, gauge/gaugebcs/gaugebcs.h,
	  gauge/gaugebcs/schr1link_gaugebc.cc,
	  gauge/gaugebcs/schr1link_gaugebc.h,
	  gauge/gaugebcs/schr2link_gaugebc.cc,
	  gauge/gaugebcs/schr2link_gaugebc.h,
	  gauge/gaugebcs/schr_coupling_gaugebc.cc,
	  gauge/gaugebcs/schr_coupling_gaugebc.h,
	  gauge/gaugebcs/schr_gaugebc_params.cc,
	  gauge/gaugebcs/schr_gaugebc_params.h,
	  gauge/gaugebcs/schr_nonpert_gaugebc.cc,
	  gauge/gaugebcs/schr_nonpert_gaugebc.h,
	  gauge/gaugebcs/schr_sf_gaugebc.cc,
	  gauge/gaugebcs/schr_sf_gaugebc.h,
	  gauge/gaugebcs/schr_triv_gaugebc.cc,
	  gauge/gaugebcs/schr_triv_gaugebc.h,
	  gauge/gaugebcs/schroedinger_gaugebc.cc,
	  gauge/gaugebcs/schroedinger_gaugebc.h: Removed schr1link and
	  schr2link gauge stuff. Commented out for now the same stuff in
	  fermions (will replace with something else).	Added new
	  schr_{sf,triv,nonpert,coupling}_gaugebc.{h,cc} .  Seems to work -
	  at least t_leapfrog conserves energy.  Had a big revelation -
	  none of the integrator, monomials, hamilt.  should know about the
	  gaugebc stuff. That's all handled with the createState and now
	  the dsdu in the gaugeact and soon the linops impose their BC.

2006-03-13 00:16  edwards

	* lib/gaugebc.h: Removed stuff that was never exposed or needed.

2006-03-13 00:15  edwards

	* lib/Makefile.am: Removed schr1link and schr2link gauge bc stuff.
	  Added schr_{coupling,triv,sf,nonpert}_gaugebc.h Commented out
	  usage of schr{1,2}link in ferm stuff for now.

2006-03-13 00:13  edwards

	* lib/actions/gauge/gaugeacts/: pg_gaugeact.cc, plaq_gaugeact.cc,
	  rect_gaugeact.cc: Added what is now determined to be a missing
	  getGaugeBC().zero(ds_u) at the end of each  dsdu  call. This is
	  the missing piece to impose the gauge BC.

2006-03-11 15:25  edwards

	* lib/gaugebc.h: Changed comments.

2006-03-08 17:47  tag chroma2-13-4

2006-03-08 17:47  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-08 17:45  edwards

	* lib/meas/: sinks/sh_sink_smearing.cc, sources/sh_source_const.cc:
	  Added diagnostic output

2006-03-08 17:45  edwards

	* lib/actions/ferm/: fermacts/clover_fermact_params_w.cc,
	  fermacts/clover_fermact_params_w.h, linop/prec_clover_linop_w.cc,
	  linop/unprec_clover_linop_w.cc: Backed out clover support for
	  external field strength. It's breaking something - causing
	  inversions to fail in parallel. BTW, the current code wouldn't
	  work under HMC.

2006-03-08 17:43  edwards

	* NEWS, configure.ac: Changed to 2.13.4

2006-03-06 17:14  tag chroma2-13-3

2006-03-06 17:14  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Bug fix.

2006-03-06 17:13  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.metric.xml, mesonspec.out.xml: Updated regression test.

2006-03-06 16:30  edwards

	* configure: Induced changes,

2006-03-06 16:29  edwards

	* aclocal.m4: Induced changes.

2006-03-06 16:28  edwards

	* configure.ac: Changed to 2.13.3

2006-03-06 16:28  edwards

	* NEWS: Info on 2.13.3

2006-03-06 16:22  edwards

	* lib/meas/inline/hadron/: inline_mesonspec_w.cc,
	  inline_mesonspec_w.h: Changed to use an array of sink smeared
	  props.

2006-03-06 16:22  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.out.xml: Changed input to use an array of sink smeared
	  props

2006-03-03 02:37  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.metric.xml, mesonspec.out.xml: Updated test.

2006-03-03 02:32  tag chroma2-13-2

2006-03-03 02:32  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Bug fix - fixed
	  POINT_SINK

2006-03-03 02:26  edwards

	* tests/chroma/hadron/make_source/make_source-v6.out.xml: Fixed
	  regression test to match input.

2006-03-02 21:51  edwards

	* lib/actions/ferm/linop/unprec_clover_linop_w.cc: Small bug fix in
	  nFlops.

2006-03-02 21:37  edwards

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  prec_clover_linop_w.cc, unprec_clover_linop_w.cc,
	  unprec_wilson_linop_w.cc, unprec_wilson_linop_w.h: Added flop
	  counts.

2006-03-02 21:36  edwards

	* aclocal.m4, configure: Induced changes.

2006-03-02 21:35  edwards

	* NEWS: More infon on 2.13.2

2006-03-02 21:34  edwards

	* configure.ac: Changed to 2.13.2

2006-03-02 21:34  edwards

	* NEWS: Info on 2.13.2

2006-03-02 17:24  edwards

	* lib/Makefile.am: Added partwall_source_const.{h,c}

2006-03-02 17:24  edwards

	* tests/chroma/hadron/make_source/make_source-v6.ini.xml,
	  tests/chroma/hadron/make_source/make_source-v6.metric.xml,
	  tests/chroma/hadron/make_source/make_source-v6.out.xml,
	  lib/meas/sources/partwall_source_const.cc,
	  lib/meas/sources/partwall_source_const.h,
	  lib/meas/sources/source_const_aggregate.cc: Added partial wall
	  source.

2006-03-02 16:27  edwards

	* tests/chroma/hadron/make_source/: make_source-v6.ini.xml,
	  make_source-v6.metric.xml, make_source-v6.out.xml: Added wall
	  sources.

2006-03-02 12:38  edwards

	* lib/meas/hadron/photon_seqsrc_w.cc: Added printout of omega.

2006-03-01 15:14  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Added new push
	  level.

2006-03-01 13:58  bjoo

	* lib/actions/ferm/: fermacts/clover_fermact_params_w.cc,
	  fermacts/clover_fermact_params_w.h, linop/prec_clover_linop_w.cc,
	  linop/unprec_clover_linop_w.cc: Added optional External Field
	  strength to prec and unprec clover fermact params and linops

2006-02-28 16:46  edwards

	* tests/chroma/hadron/mesonspec/mesonspec.metric.xml: Updated
	  paths.

2006-02-28 16:46  edwards

	* tests/chroma/hadron/mesonspec/mesonspec.out.xml: Updated test.

2006-02-28 16:40  edwards

	* lib/meas/inline/hadron/inline_mesonspec_w.cc: Changed output
	  version.

2006-02-28 16:20  edwards

	* tests/regres.pl: New regression test.

2006-02-28 16:18  edwards

	* tests/chroma/hadron/mesonspec/: mesonspec.ini.xml,
	  mesonspec.metric.xml, mesonspec.out.xml, regres.pl: New
	  regression tests.

2006-02-28 15:55  edwards

	* lib/Makefile.am: Added inline_mesonspec_w

2006-02-28 15:55  edwards

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_mesonspec_w.cc, inline_mesonspec_w.h: Added
	  inline_mesonspec

2006-02-28 14:59  edwards

	* lib/meas/inline/hadron/inline_hadspec_w.cc: Changed xml tag name.

2006-02-28 08:06  mcneile

	* tests/regres.pl: I have put back the staggered code test.

2006-02-28 05:41  mcneile

	* tests/spectrum_s/: spectrum_s_reg.xml,
	  spectrum_s_reg_test_output.xml: These are the new test cases.

2006-02-28 05:40  mcneile

	* tests/spectrum_s/regres.pl: I have changed the test so that a
	  DISORDERED configuration is used

2006-02-27 12:09  bjoo

	* lib/update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc,
	  mainprogs/tests/t_leapfrog.cc, tests/regres.pl: Added regression
	  tests

2006-02-27 12:06  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.metric.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.out.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.out.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.metric.xml,
	  t_leapfrog.parwilson_pqp_integrator_mts.out.xml,
	  t_leapfrog.parwilson_qpq_integrator_mts.ini.xml,
	  t_leapfrog.prec_2flav_clover_ee_oo.metric.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_order_qpq_integrator_mts.metric.xml:
	  Made regres tests for clover ee oo and for Carstens new MTS
	  integrators

2006-02-27 11:37  edwards

	* scripts/build.sh: Updated mailing addresses and finishmail
	  message.

2006-02-27 10:34  bjoo

	* lib/: Makefile.am, update/molecdyn/integrator/integrator.h,
	  update/molecdyn/integrator/integrator_aggregate.cc,
	  update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.cc,
	  update/molecdyn/integrator/lcm_minimum_norm2_integrator_mts.h,
	  update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.cc,
	  update/molecdyn/integrator/lcm_minimum_norm2_qpq_integrator_mts.h,
	  update/molecdyn/integrator/lcm_pqp_leapfrog_mts.cc,
	  update/molecdyn/integrator/lcm_pqp_leapfrog_mts.h: Automade
	  Makefile.ins - added Carstens XML files

2006-02-27 10:32  bjoo

	* tests/hmc/hmc.prec_parwilson.ini.xml: Added Carsten's HMC file

2006-02-27 10:31  bjoo

	* tests/t_leapfrog/:
	  t_leapfrog.parwilson_minimal_norm_2nd_order_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_minimal_norm_2nd_qpq_integrator_mts.ini.xml,
	  t_leapfrog.parwilson_qpq_integrator_mts.ini.xml: Added input
	  files for MTS integrators

2006-02-27 00:51  tag chroma2-13-1

2006-02-27 00:51  edwards

	* tests/: chroma/glue/fuzwilp/fuzwilp.ini.xml,
	  chroma/glue/fuzwilp/fuzwilp.metric.xml,
	  chroma/glue/fuzwilp/fuzwilp.out.xml,
	  chroma/glue/fuzwilp/regres.pl, regres.pl: New regression tests.

2006-02-27 00:25  edwards

	* NEWS: Info on 2.13.1

2006-02-27 00:21  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-27 00:18  edwards

	* configure.ac: Changed to version 2.13.1

2006-02-26 17:45  edwards

	* lib/meas/inline/io/qio_write_obj_funcmap.cc: Added staggered prop
	  writers.

2006-02-26 17:04  edwards

	* tests/: regres.pl, chroma/hadron_s/spectrum_s/regres.pl,
	  chroma/hadron_s/spectrum_s/spectrum_s.ini.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.metric.xml,
	  chroma/hadron_s/spectrum_s/spectrum_s.out.xml: Added spectrum_s
	  tests.

2006-02-26 16:42  edwards

	* tests/chroma/hadron_s/spectrum_s.ini.xml: Added staggered input.

2006-02-26 16:41  edwards

	* lib/meas/inline/: inline_aggregate.cc, hadron_s/hadron_s.h,
	  hadron_s/inline_hadron_aggregate.h,
	  hadron_s/inline_hadron_aggregate_s.cc,
	  hadron_s/inline_hadron_aggregate_s.h: Added
	  inline_hadron_aggregate_s.{h,cc}. Now include staggered
	  measurements.

2006-02-26 16:40  edwards

	* lib/meas/inline/hadron_s/: util_compute_8_pions_s.cc,
	  util_compute_8_scalars_s.cc, util_compute_8_vectors_s.cc,
	  util_compute_meson_s.cc, util_compute_quark_prop_s.cc,
	  util_compute_singlet_ps.cc: Commented out include of fermbcs.h -
	  not needed.

2006-02-26 16:37  edwards

	* lib/Makefile.am: Renamed and added new
	  inline_hadron_aggregate_s.{h,cc}

2006-02-26 16:18  edwards

	* lib/meas/hadron/scalar_loops_s.cc: Put TimeSliceFunc in an
	  anonymous namespace. This avoids colliding with
	  chroma/lib/util/ft/sftmom.cc . However, really this stag. code
	  should use the phases stuff to simply their life.

2006-02-26 16:17  edwards

	* lib/util/ft/sftmom.cc: Put TimeSliceFunc in an anonymous
	  namespace.

2006-02-26 15:13  edwards

	* lib/: Makefile.am, actions/ferm/fermbcs/fermbcs.h: Added
	  periodic_fermbc.h

2006-02-26 10:47  mcneile

	* mainprogs/tests/t_fuzwilp.cc: I have just fixed a typo

2006-02-26 09:43  mcneile

	* lib/meas/glue/fuzwilp.cc: I have fixed a typo in the file.

2006-02-26 09:31  mcneile

	* mainprogs/tests/t_fuzwilp.cc: I have added the additional
	  parameter that Alan wanted.

2006-02-26 09:17  mcneile

	* lib/meas/inline/glue/: inline_fuzwilp.cc, inline_fuzwilp.h: I
	  have added a cut off parameter to stop the computation of Wilson
	  loops at long time tange.

2006-02-26 09:11  mcneile

	* lib/meas/glue/: fuzwilp.h, fuzwilp.cc: This is a check in for
	  Alan Irving. A cut off is introduced for the computation of
	  Wilson loops, This stops the code spending a lot of time
	  computing stuff that is too noisy to be useful.

2006-02-25 23:32  tag chroma2-13-0

2006-02-25 23:32  edwards

	* tests/chroma/gfix/coulgauge/regres.pl: New regression test.

2006-02-25 23:30  edwards

	* tests/: chroma/gfix/coulgauge/coulgauge.ini.xml,
	  chroma/gfix/coulgauge/coulgauge.metric.xml,
	  chroma/gfix/coulgauge/coulgauge.out.xml, regres.pl: New
	  regression tests.

2006-02-25 23:19  edwards

	* lib/meas/inline/gfix/inline_coulgauge.cc: Bug fix. Changed name
	  to COULOMB_GAUGEFIX.

2006-02-25 22:47  edwards

	* lib/: fermbc.h, gaugebc.h,
	  actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  actions/ferm/fermacts/poly_cheb_fermact_w.cc,
	  actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_stout_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_stout_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  actions/ferm/fermacts/unprec_hamberwu_fermact_w.cc,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_stout_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_stout_fermact_w.cc,
	  actions/ferm/fermacts/unprec_w12_fermact_w.cc,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermbcs/fermbcs.h,
	  actions/ferm/fermbcs/fermbcs_aggregate_s.cc,
	  actions/ferm/fermbcs/fermbcs_aggregate_s.h,
	  actions/ferm/fermbcs/fermbcs_aggregate_w.cc,
	  actions/ferm/fermbcs/fermbcs_aggregate_w.h,
	  actions/ferm/fermbcs/fermbcs_reader_s.cc,
	  actions/ferm/fermbcs/fermbcs_reader_s.h,
	  actions/ferm/fermbcs/fermbcs_reader_w.cc,
	  actions/ferm/fermbcs/fermbcs_reader_w.h,
	  actions/ferm/fermbcs/fermbcs_s.cc,
	  actions/ferm/fermbcs/fermbcs_s.h,
	  actions/ferm/fermbcs/fermbcs_w.cc,
	  actions/ferm/fermbcs/fermbcs_w.h,
	  actions/ferm/fermbcs/periodic_fermbc.h,
	  actions/ferm/fermbcs/periodic_fermbc_w.cc,
	  actions/ferm/fermbcs/periodic_fermbc_w.h,
	  actions/ferm/fermbcs/schr1link_fermbc_w.cc,
	  actions/ferm/fermbcs/schr1link_fermbc_w.h,
	  actions/ferm/fermbcs/schr2link_fermbc_w.cc,
	  actions/ferm/fermbcs/schr2link_fermbc_w.h,
	  actions/ferm/fermbcs/schr_fermbc_params.cc,
	  actions/ferm/fermbcs/schr_fermbc_params.h,
	  actions/ferm/fermbcs/schroedinger_fermbc_w.h,
	  actions/ferm/fermbcs/simple_fermbc.h,
	  actions/ferm/fermbcs/simple_fermbc_w.cc,
	  actions/ferm/fermbcs/simple_fermbc_w.h,
	  actions/ferm/fermbcs/twisted_fermbc_w.cc,
	  actions/ferm/fermbcs/twisted_fermbc_w.h,
	  actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  actions/gauge/gaugebcs/gaugebc_periodic.cc,
	  actions/gauge/gaugebcs/gaugebc_periodic.h,
	  actions/gauge/gaugebcs/gaugebc_schroedinger.cc,
	  actions/gauge/gaugebcs/gaugebc_schroedinger.h,
	  actions/gauge/gaugebcs/gaugebc_simple.cc,
	  actions/gauge/gaugebcs/gaugebc_simple.h,
	  actions/gauge/gaugebcs/gaugebcs.h,
	  actions/gauge/gaugebcs/periodic_gaugebc.cc,
	  actions/gauge/gaugebcs/periodic_gaugebc.h,
	  actions/gauge/gaugebcs/schr1link_gaugebc.cc,
	  actions/gauge/gaugebcs/schr1link_gaugebc.h,
	  actions/gauge/gaugebcs/schr2link_gaugebc.cc,
	  actions/gauge/gaugebcs/schr2link_gaugebc.h,
	  actions/gauge/gaugebcs/schr_gaugebc_params.cc,
	  actions/gauge/gaugebcs/schr_gaugebc_params.h,
	  actions/gauge/gaugebcs/schroedinger_gaugebc.h,
	  actions/gauge/gaugebcs/simple_gaugebc.cc,
	  actions/gauge/gaugebcs/simple_gaugebc.h: Rearrangement of fermbcs
	  and gaugebcs. Split off SchrFermBC and SchrGaugeBC along with
	  Simple and Periodic varieties and pushed them down into the resp.
	  fermbcs and gaugebcs directories. The top level fermbc.h and
	  gaugebc.h are now only the base classes.  Renamed all gaugebc
	  files to be consistent with the fermbc and fermact filenames.
	  Start of true Schroedinger functional support.

2006-02-25 22:45  edwards

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: Changed include of
	  fermbcs to simple_fermbc_s.h

2006-02-25 22:43  edwards

	* lib/Makefile.am: Reorg of gaugebcs and fermbcs

2006-02-25 22:42  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-25 22:41  edwards

	* configure.ac: Changed to 2.13.0

2006-02-25 22:41  edwards

	* NEWS: Info on 2.13.0

2006-02-25 22:35  tag chroma2-12-1

2006-02-25 22:35  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-25 22:34  edwards

	* NEWS: Info on 2.12.1

2006-02-25 22:34  edwards

	* configure.ac: Changed to 2.12.1

2006-02-25 22:33  edwards

	* NEWS: Info on 2.12.0

2006-02-25 22:31  edwards

	* README: Info on chroma version 2.12

2006-02-25 17:48  bjoo

	* lib/Makefile.am,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.cc,
	  lib/update/molecdyn/monomial/monomial_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_logdet_ee_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.ini.xml,
	  tests/t_leapfrog/t_leapfrog.prec_2flav_clover_ee_oo.out.xml: Made
	  EOPREC_CONSTDER monomial take clover but treat it as constdet.
	  Added clover EE monomial

2006-02-25 14:47  edwards

	* lib/actions/gauge/gaugebcs/: gaugebc_factory.h,
	  gaugebc_periodic.cc, gaugebc_periodic.h, gaugebc_schroedinger.cc,
	  gaugebc_schroedinger.h, gaugebc_simple.cc, gaugebc_simple.h:
	  Added doxygen comments.

2006-02-24 06:06  mcneile

	* tests/regres.pl: I am temporarilty removing the staggered test
	  while we deal with the gauge config issue.

2006-02-23 16:00  edwards

	* lib/Makefile.am: Added inline_coulgauge and inline_gfix

2006-02-23 15:58  edwards

	* lib/meas/inline/: inline_aggregate.cc, gfix/gfix.h,
	  gfix/inline_coulgauge.cc, gfix/inline_coulgauge.h,
	  gfix/inline_gfix_aggregate.cc, gfix/inline_gfix_aggregate.h,
	  smear/inline_stout_smear.cc: Added gauge fixing measurements.

2006-02-23 11:01  bjoo

	* NEWS: Oops in the NEws

2006-02-23 10:46  tag chroma2-12-0

2006-02-23 10:46  bjoo

	* NEWS: New NEWS

2006-02-23 10:45  bjoo

	* configure, configure.ac: Increased version number in configure.ac

2006-02-23 10:44  bjoo

	* NEWS, lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi-v8.metric.xml:
	  XML Magic in Multi qprop

2006-02-22 21:38  bjoo

	* lib/meas/inline/eig/inline_ritz_H_w.cc,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  tests/chroma/eig/ritz_Hw-v1.ini.xml,
	  tests/chroma/eig/ritz_Hw-v1.metric.xml,
	  tests/chroma/eig/ritz_Hw-v1.out.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi-v8.ini.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi-v8.out.xml:
	  Fixed XML hither and yon

2006-02-22 18:48  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/eigen_state.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/meas/inline/eig/inline_ritz_H_w.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/io/qio_read_obj_funcmap.cc,
	  lib/meas/inline/io/qio_write_obj_funcmap.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  lib/util/ferm/eigeninfo.h, tests/regres.pl,
	  tests/chroma/eig/regres.pl, tests/chroma/eig/ritz_Hw-v1.ini.xml,
	  tests/chroma/eig/ritz_Hw-v1.metric.xml,
	  tests/chroma/eig/ritz_Hw-v1.out.xml,
	  tests/chroma/hadron/propagator/regres.pl,
	  tests/chroma/hadron/propagator/unprec-ovlap-zolo4d-v9.out.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi-v8.ini.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi-v8.metric.xml,
	  tests/chroma/hadron/propagator/unprec-zolo-ev-multi-v8.out.xml:
	  Added new Zolotarev stuff with Ritz and Multi-mass and added
	  regresssions for these

2006-02-22 11:27  streuer

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: Merged Makefile.ins and other local
	  edits resulting from inline Ritz

2006-02-22 11:23  streuer

	* lib/util/ferm/eigeninfo.h: added data structure for
	  eigenvectors/values

2006-02-22 11:22  streuer

	* lib/Makefile.am: Added Ritz stuff to Makefile.am

2006-02-22 11:09  streuer

	* lib/meas/inline/eig/: eig.h, inline_eig_aggregate.cc,
	  inline_ritz_H_w.cc, inline_ritz_H_w.h: added first attempt to
	  inline ritz measurement

2006-02-22 00:23  bjoo

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_multi_propagator_w.cc, inline_propagator_w.cc: Modified to
	  really use state info

2006-02-21 23:36  tag chroma2-11-0

2006-02-21 23:36  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-21 23:34  edwards

	* lib/Makefile.am: Added quark_displacement stuff.

2006-02-21 23:34  edwards

	* lib/meas/: sinks/pt_sink_smearing.cc, sinks/pt_sink_smearing.h,
	  sinks/sh_sink_smearing.cc, sinks/sh_sink_smearing.h,
	  sources/deriv_sh_source_const_w.cc,
	  sources/deriv_sh_source_const_w.h, sources/pt_source_const.cc,
	  sources/pt_source_const.h, sources/pt_source_smearing.cc,
	  sources/pt_source_smearing.h, sources/sh_source_const.cc,
	  sources/sh_source_const.h, sources/sh_source_smearing.cc,
	  sources/sh_source_smearing.h, sources/source_const_aggregate.cc:
	  Got rid of deriv_sh_source/sink stuff. Have generalized
	  "displacements" in sources and sinks to be a factory
	  "Displacement". The derivatives are just another displacement.

2006-02-21 23:32  edwards

	* NEWS: Info on 2.11.0

2006-02-21 23:30  edwards

	* configure.ac: Changed to 2.11.0

2006-02-21 23:29  edwards

	* tests/chroma/hadron/make_source/: source-displace.ini.xml,
	  source-displace.out.xml: Updated tests.

2006-02-21 23:22  edwards

	* tests/chroma/hadron/sink_smear/: sink-displace.ini.xml,
	  sink-displace.out.xml: Updated test

2006-02-21 23:13  edwards

	* tests/regres.pl: Fixed path

2006-02-21 22:27  edwards

	* lib/meas/smear/deriv_quark_displacement_w.cc: Fixed up deriv. for
	  isign.

2006-02-21 22:27  edwards

	* lib/meas/smear/quark_displacement_aggregate.cc: Added no quark
	  displacement

2006-02-21 22:27  edwards

	* lib/meas/smear/: no_quark_displacement.cc,
	  no_quark_displacement.h: No quark displacement.

2006-02-21 22:24  edwards

	* tests/chroma/hadron/make_source/: deriv-source.ini.xml,
	  deriv-source.metric.xml, deriv-source.out.xml, regres.pl,
	  source-deriv.ini.xml, source-deriv.metric.xml,
	  source-deriv.out.xml, source-displace.ini.xml,
	  source-displace.metric.xml, source-displace.out.xml: Updated
	  regression tests.

2006-02-21 22:23  edwards

	* tests/: chroma/hadron/sink_smear/regres.pl,
	  chroma/hadron/sink_smear/sink-deriv.ini.xml,
	  chroma/hadron/sink_smear/sink-deriv.metric.xml,
	  chroma/hadron/sink_smear/sink-deriv.out.xml,
	  chroma/hadron/sink_smear/sink-displace.ini.xml,
	  chroma/hadron/sink_smear/sink-displace.metric.xml,
	  chroma/hadron/sink_smear/sink-displace.out.xml,
	  chroma/hadron/sink_smear/sink_smearing-v5.metric.xml,
	  chroma/hadron/sink_smear/sink_smearing-v5.out.xml, regres.pl: New
	  regression tests.

2006-02-21 10:43  mcneile

	* tests/regres.pl: I have added a test for the staggered spectrum
	  code.

2006-02-21 10:10  mcneile

	* tests/spectrum_s/: regres.pl, spectrum_s.metric.xml: We are
	  starting to put the staggered stuff into the regression testing
	  framework.

2006-02-21 01:45  edwards

	* lib/meas/smear/: deriv_quark_displacement_w.cc,
	  deriv_quark_displacement_w.h, quark_displacement.h,
	  quark_displacement_aggregate.cc, quark_displacement_aggregate.h,
	  quark_displacement_factory.h, simple_quark_displacement.cc,
	  simple_quark_displacement.h: New displacement routines.

2006-02-20 18:19  egregory

	* tests/spectrum_s/spectrum_s_test_output.xml: test output for
	  testing spectrum_s

2006-02-20 17:51  edwards

	* lib/meas/sources/deriv_sh_source_const_w.cc: Added missing
	  template.

2006-02-20 16:32  edwards

	* lib/meas/sources/: deriv_sh_source_const_w.cc,
	  deriv_sh_source_const_w.h: Grrh. Fixed more doxygen comments.

2006-02-20 16:20  edwards

	* lib/meas/sources/: deriv_sh_source_const_w.cc,
	  deriv_sh_source_const_w.h: Fixed doxygen comments.

2006-02-20 15:43  edwards

	* tests/chroma/glue/wilslp/wilslp.metric.xml: New metric file.

2006-02-20 15:42  edwards

	* lib/meas/inline/glue/: inline_fuzwilp.cc, inline_fuzwilp.h: Added
	  doxygen comments.

2006-02-20 15:42  edwards

	* lib/meas/sources/: deriv_sh_source_const_w.cc,
	  deriv_sh_source_const_w.h: Fixed sources.

2006-02-20 15:41  edwards

	* tests/chroma/hadron/make_source/: deriv-source.ini.xml,
	  deriv-source.metric.xml, deriv-source.out.xml, regres.pl: New
	  derivative soruces.

2006-02-20 12:59  edwards

	* tests/chroma/hadron/make_source/deriv-source.ini.xml: New input
	  file.

2006-02-20 12:50  edwards

	* lib/Makefile.am: Added deriv_sh_source_const.{h,cc}

2006-02-20 12:50  edwards

	* lib/meas/sources/: deriv_sh_source_const_w.cc,
	  deriv_sh_source_const_w.h, source_const_aggregate.cc: Fixing
	  derivative sources.

2006-02-20 12:38  edwards

	* tests/regres.pl: New regression tests.

2006-02-20 12:37  edwards

	* tests/chroma/glue/wilslp/: regres.pl, wilslp.ini.xml,
	  wilslp.out.xml: New inputs and regression tests. I don't like the
	  output format, however.  Need to change.

2006-02-20 11:48  edwards

	* install_scripts/cygwin/config_chroma_parscalar-single.sh: New
	  install file.

2006-02-20 09:50  egregory

	* tests/spectrum_s/spectrum_s.xml: changed the path to the test
	  config t_nersc.cfg so it does not have top be copied.

2006-02-20 09:47  egregory

	* lib/meas/inline/hadron_s/util_compute_8_vectors_s.cc: added
	  missing xml pop and changed the tag

2006-02-20 09:47  egregory

	* lib/meas/inline/hadron_s/util_compute_8_scalars_s.cc: added
	  missing xml pop

2006-02-20 09:46  egregory

	* lib/meas/inline/hadron_s/util_compute_8_pions_s.cc: added a
	  missing  xml pop

2006-02-20 09:45  egregory

	* mainprogs/main/spectrum_s.cc:
	  added xml_out.close() to try to fix the lack of carraige return
	  at the end of the file. Didnt fix it.

2006-02-19 16:20  mcneile

	* mainprogs/main/Makefile.am: I have added spectrum_s to the
	  programs that install

2006-02-19 00:22  edwards

	* lib/meas/sources/: deriv_sh_source_const_w.cc,
	  deriv_sh_source_const_w.h: First version.

2006-02-17 07:46  bjoo

	* tests/t_leapfrog/t_leapfrog.prec_2flav_clover.out.xml: Replaced
	  controlfile for prec 2flav clover

2006-02-16 21:10  tag chroma2-10-1

2006-02-16 21:10  edwards

	* NEWS: Info on 2.10.1

2006-02-16 21:07  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc: Added
	  timings.

2006-02-16 21:05  edwards

	* tests/t_leapfrog/t_leapfrog.prec_2flav_clover.out.xml: Updated
	  canonical output.

2006-02-16 19:13  edwards

	* lib/actions/ferm/fermacts/remez_stub.h: Improved diagnostic
	  message.

2006-02-16 17:33  kostas

	* lib/actions/ferm/linop/polynomial_op.h: fixed some of the force
	  bugs

2006-02-16 16:03  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-16 16:02  edwards

	* lib/: chromabase.h, actions/ferm/fermacts/remez.h,
	  actions/ferm/linop/clover_term_w.h,
	  actions/ferm/linop/dslash_array_w.h,
	  actions/ferm/linop/dslash_w.h,
	  actions/ferm/linop/ovlap_contfrac5d_w.h,
	  actions/ferm/qprop/dwf_qpropt_w.h, io/szin_io.cc,
	  util/info/proginfo.cc: Pulled out chroma_config.h from
	  chromabase.h . Moved the chroma_config.h include into only the
	  files that require it.

2006-02-16 16:02  edwards

	* configure.ac: Changed to 2.10.1 . Hopefully, the chroma_config.h
	  file has been pulled out of the major dependencies. Thus, all the
	  lib won't recompile by changing the version number.

2006-02-16 15:18  edwards

	* lib/meas/eig/eig.h: Removed unused ifdefs

2006-02-16 14:03  bjoo

	* lib/actions/ferm/linop/clover_term_base_w.cc: Hopefully more
	  optimal clover term

2006-02-15 22:09  tag chroma2-10-0

2006-02-15 22:09  edwards

	* tests/chroma/hadron/seqsource/seqsource-photon-v2.ini.xml:
	  Changed name and momentum.

2006-02-15 22:05  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-15 22:03  edwards

	* NEWS: Info on 2.10.0

2006-02-15 22:02  edwards

	* configure.ac: Changed to 2.10.0

2006-02-15 22:01  edwards

	* tests/hmc/: hmc.prec_wilson.ini.xml, hmc.prec_wilson.out.xml:
	  Updated to new naming scheme.

2006-02-15 22:00  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_wilson.ini.xml,
	  t_leapfrog.prec_1flav_wilson.out.xml,
	  t_leapfrog.prec_2flav_clover.ini.xml,
	  t_leapfrog.prec_contfrac.ini.xml, t_leapfrog.prec_dwf.ini.xml,
	  t_leapfrog.prec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.prec_hasenbusch_wilson.out.xml,
	  t_leapfrog.prec_parwilson.ini.xml,
	  t_leapfrog.prec_polynomial_wilson.ini.xml,
	  t_leapfrog.prec_wilson.ini.xml, t_leapfrog.prec_wilson.out.xml,
	  t_leapfrog.unprec_clover.ini.xml,
	  t_leapfrog.unprec_clover.out.xml, t_leapfrog.unprec_dwf.ini.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.unprec_hasenbusch_wilson.out.xml,
	  t_leapfrog.unprec_wilson.ini.xml,
	  t_leapfrog.unprec_wilson.out.xml: Updated monomials to new naming
	  scheme. Updated the outputs.

2006-02-15 21:59  edwards

	* lib/update/molecdyn/monomial/: gauge_monomial.cc,
	  gauge_monomial.h, prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  prec_constdet_one_flavor_rat_monomial5d_w.h,
	  prec_constdet_one_flavor_rat_monomial_w.cc,
	  prec_constdet_one_flavor_rat_monomial_w.h,
	  prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  prec_constdet_two_flavor_monomial5d_w.cc,
	  prec_constdet_two_flavor_monomial5d_w.h,
	  prec_constdet_two_flavor_monomial_w.cc,
	  prec_constdet_two_flavor_monomial_w.h,
	  prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  prec_logdet_two_flavor_monomial_w.cc,
	  prec_logdet_two_flavor_monomial_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h,
	  unprec_two_flavor_hasenbusch_monomial_w.cc,
	  unprec_two_flavor_hasenbusch_monomial_w.h,
	  unprec_two_flavor_monomial5d_w.cc,
	  unprec_two_flavor_monomial5d_w.h,
	  unprec_two_flavor_monomial_w.cc, unprec_two_flavor_monomial_w.h:
	  Changed runtime naming convention for monomials. Now the "name"
	  is just for the concrete monomial which fires up via a factory
	  the desired fermact. The fermact or gaugeact is no longer in the
	  name.

2006-02-15 21:41  tag chroma2-9-2

2006-02-15 21:41  edwards

	* NEWS: Info on 2.9.2

2006-02-15 21:33  bjoo

	* tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.metric.xml:
	  ./t_leapfrog.prec_1flav_dwf.metric.xml

2006-02-15 21:29  bjoo

	* lib/prec_logdet_linop.h: Fixed this up as needed

2006-02-15 21:27  bjoo

	* lib/Makefile.am: Added logdet 2 flav monomials

2006-02-15 21:26  bjoo

	* lib/update/molecdyn/monomial/: monomial_aggregate_w.cc,
	  monomial_w.h, prec_logdet_two_flavor_monomial_w.cc,
	  prec_logdet_two_flavor_monomial_w.h, two_flavor_monomial_w.h:
	  Added monomial for prec_2flav_logdet

2006-02-15 21:24  bjoo

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  clover_term_base_w.h, clover_term_qdp_w.cc, clover_term_qdp_w.h,
	  prec_clover_linop_w.cc, prec_clover_linop_w.h: Reworked clover
	  forces. Fixed triancntr. Made prec_clover_linop work

2006-02-15 21:23  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_2flav_clover.ini.xml,
	  t_leapfrog.prec_2flav_clover.metric.xml,
	  t_leapfrog.prec_2flav_clover.out.xml: Prec clover leapfrog
	  regression tests

2006-02-15 00:45  edwards

	* tests/t_leapfrog/: regres.pl, t_leapfrog.prec_contfrac.ini.xml,
	  t_leapfrog.prec_contfrac.metric.xml,
	  t_leapfrog.prec_contfrac.out.xml,
	  t_leapfrog.prec_contfrac.xml.ini: More regression tests.

2006-02-15 00:41  edwards

	* tests/t_leapfrog/: regres.pl, t_leapfrog.prec_1flav_dwf.ini.xml,
	  t_leapfrog.prec_1flav_dwf.metric.xml,
	  t_leapfrog.prec_1flav_dwf.out.xml,
	  t_leapfrog.prec_1flav_dwf.xml.ini, t_leapfrog.unprec_dwf.ini.xml,
	  t_leapfrog.unprec_dwf.metric.xml, t_leapfrog.unprec_dwf.out.xml,
	  t_leapfrog.unprec_dwf.xml.ini: More regression tests.

2006-02-15 00:27  edwards

	* lib/Makefile.am: Added gaugeacts_aggregate.{h,cc}

2006-02-15 00:26  tag chroma2-9-1

2006-02-15 00:26  edwards

	* NEWS: Info on 2.9.1

2006-02-15 00:24  edwards

	* lib/actions/gauge/gaugeacts/: gaugeacts_aggregate.cc,
	  gaugeacts_aggregate.h: New aggegrates.

2006-02-14 23:53  edwards

	* lib/actions/ferm/fermacts/fermact_factory_w.h: Changed chromabase
	  to fermact.h since that's the guy really needed.

2006-02-14 18:15  kostas

	* lib/actions/ferm/linop/polynomial_op.h: fixed derivative bugs

2006-02-14 18:05  kostas

	* lib/actions/ferm/linop/: polprec_op.h, polynomial_op.h: made
	  deriv a const for polynomial operators

2006-02-14 10:51  edwards

	* tests/hmc/hmc.prec_wilson.metric.xml: Changed from checking
	  deltaH to deltaKE and deltaPE

2006-02-13 20:52  edwards

	* lib/meas/hadron/seqsource_aggregate_w.cc: Added new seqsources.

2006-02-13 17:28  edwards

	* tests/chroma/hadron/seqsource/seqsource-photon-v2.ini.xml: Photon
	  seq. src input file.

2006-02-13 17:27  edwards

	* lib/meas/hadron/photon_seqsrc_w.cc: Changed A0-PHOTON to
	  PION-PHOTON.

2006-02-13 16:33  edwards

	* lib/meas/hadron/photon_seqsrc_w.cc: A much better way to setup
	  the sink.

2006-02-13 15:47  edwards

	* lib/meas/hadron/: photon_seqsrc_w.cc, photon_seqsrc_w.h: First
	  version.

2006-02-13 15:46  edwards

	* lib/Makefile.am: Added photon_seqsrc_w.{h,cc}

2006-02-13 10:38  edwards

	* tests/hmc/hmc.prec_wilson.metric.xml: Changed accuracy.

2006-02-12 23:50  edwards

	* tests/regres.pl: Added hmc regression tests.

2006-02-12 23:50  edwards

	* tests/hmc/: hmc.prec_wilson.ini.xml, hmc.prec_wilson.metric.xml,
	  hmc.prec_wilson.out.xml, regres.pl: New regression tests.

2006-02-12 21:10  bjoo

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  clover_term_base_w.h: Factored out loop code

2006-02-12 20:31  bjoo

	* tests/t_leapfrog/: regres.pl, t_leapfrog.unprec_clover.ini.xml,
	  t_leapfrog.unprec_clover.metric.xml,
	  t_leapfrog.unprec_clover.out.xml: Added unprec clover regression
	  test

2006-02-12 20:20  bjoo

	* lib/actions/ferm/linop/: clover_term_base_w.cc,
	  clover_term_base_w.h, clover_term_qdp_w.cc, clover_term_qdp_w.h,
	  lwldslash_base_w.cc, unprec_clover_linop_w.cc: Pseudofermionic
	  clover force added. The even even part is still yet to come

2006-02-12 20:18  bjoo

	* lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc:
	  Added Clover Monomial

2006-02-11 23:39  edwards

	* tests/chroma/hadron/seqsource/seqsource-derivmeson-v2.ini.xml:
	  Start of new input file.

2006-02-11 23:39  edwards

	* lib/meas/hadron/derivmesonseqsrc_w.cc: Missed a registration.

2006-02-11 16:23  edwards

	* lib/meas/hadron/derivmesonseqsrc_w.cc: More doxygen comments.

2006-02-11 16:18  edwards

	* lib/meas/hadron/: derivmesonseqsrc_w.cc, derivmesonseqsrc_w.h:
	  Finally all compiles.

2006-02-11 16:18  edwards

	* lib/util/ferm/: antisymtensor.cc, etensor.cc, symtensor.cc: Added
	  sanity checks.

2006-02-11 12:23  edwards

	* lib/util/ferm/antisymtensor.cc: Changed comments.

2006-02-11 12:22  edwards

	* lib/util/ferm/symtensor.cc: Changed 1.0 to 1.

2006-02-11 12:22  edwards

	* lib/util/ferm/: etensor.cc, etensor.h: Antisym tensor used in E
	  representation

2006-02-11 12:22  edwards

	* lib/Makefile.am: Added etensor.{h,cc}

2006-02-10 23:37  edwards

	* lib/meas/hadron/derivmesonseqsrc_w.cc: A few more piddly changes.

2006-02-10 21:34  edwards

	* lib/meas/hadron/: derivmesonseqsrc_w.cc, derivmesonseqsrc_w.h:
	  Yeah, it at least compiles.

2006-02-09 23:21  edwards

	* tests/t_leapfrog/t_leapfrog.prec_polynomial_wilson.ini.xml:
	  Changed input

2006-02-09 21:51  tag chroma2-9-0

2006-02-09 21:51  edwards

	* lib/meas/hadron/: derivmesonseqsrc_w.cc, derivmesonseqsrc_w.h:
	  Start of derivative sequential sources.

2006-02-09 21:49  edwards

	* aclocal.m4, configure: Induced changes.

2006-02-09 21:48  edwards

	* NEWS: Info on 2.9.0

2006-02-09 21:48  edwards

	* configure.ac: Changed to 2.9.0.

2006-02-09 21:45  edwards

	* lib/update/molecdyn/monomial/: monomial_aggregate_w.cc,
	  prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  prec_constdet_two_flavor_polynomial_monomial_w.h,
	  prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  prec_constdet_two_flavor_polyprec_monomial_w.h,
	  two_flavor_polynomial_monomial_w.h,
	  two_flavor_polyprec_monomial_w.h: Added polynomial variants. Now
	  compile and run but produces NaNs.

2006-02-09 21:45  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  fermacts/poly_cheb_fermact_w.cc, fermacts/poly_cheb_fermact_w.h,
	  linop/polynomial_op.h: Added polynomial variants. Now compile and
	  run, but get NaNs

2006-02-09 21:44  edwards

	* lib/: polyfermact.h, polylinop.h: Polynomial variants.

2006-02-09 21:44  edwards

	* lib/Makefile.am: Added polynomial routines.

2006-02-09 21:42  edwards

	* tests/t_leapfrog/t_leapfrog.prec_polynomial_wilson.ini.xml:
	  Sample input file

2006-02-09 17:29  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Turned off
	  poly stuff.

2006-02-09 17:29  edwards

	* lib/update/molecdyn/monomial/monomial_aggregate_w.cc: Turned off
	  poly stuff

2006-02-09 17:26  edwards

	* lib/: update/molecdyn/monomial/monomial_aggregate_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polynomial_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_polyprec_monomial_w.h,
	  update/molecdyn/monomial/two_flavor_polynomial_monomial_w.h,
	  update/molecdyn/monomial/two_flavor_polyprec_monomial_w.h,
	  actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/fermacts/poly_cheb_fermact_w.cc,
	  actions/ferm/fermacts/poly_cheb_fermact_w.h: First versions.

2006-02-09 14:26  egregory

	* lib/Makefile.am: added entries for
	  meas/inline/hadron_s/util_compute_8_scalars_s.cc
	  meas/inline/hadron_s/util_compute_8_vectors_s.cc

2006-02-09 13:25  egregory

	* tests/spectrum_s/spectrum_s.xml: added gauge fixing params

2006-02-09 13:18  egregory

	* lib/meas/inline/hadron_s/util_compute_8_scalars_s.cc: new file
	  for 8 tastes of scalar mesons

2006-02-09 13:17  egregory

	* lib/meas/inline/hadron_s/util_compute_8_vectors_s.cc: new file
	  for 8 tastes of vectors

2006-02-09 13:14  egregory

	* lib/meas/hadron/ks_local_loops.cc: fixed bad calls to the kilcup
	  version of loops

2006-02-09 13:08  egregory

	* lib/meas/hadron/vector_meson_s.h: changed gauge field u to
	  constant in prototype

2006-02-09 13:08  egregory

	* lib/meas/hadron/stag_scalars_s.h: changed gauge field to const in
	  the prototype

2006-02-09 13:03  egregory

	* lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: formatting

2006-02-09 13:01  egregory

	* lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc: got rid of
	  extraneous diagnostic printf

2006-02-09 12:59  egregory

	* lib/meas/inline/hadron_s/util_compute_meson_s.h: added prototypes
	  for scalar and vector meson calls.

2006-02-09 12:58  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: added gauge fixing
	  parameters

2006-02-09 12:58  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: reorganized again.
	  ensured props are computed before used ! added 8 tastes of
	  scalars and vector mesons, as well as some gauge-fixing params in
	  the input. did some general housecleaning.

2006-02-09 12:54  egregory

	* mainprogs/main/spectrum_s.cc: added coloumb gauge-fixing

2006-02-08 23:59  edwards

	* tests/chroma/hadron/seqsource/: seqsource-baryon-v1.out.xml,
	  seqsource-meson-v1.out.xml: Updated regression tests putting
	  j_decay and t_source back into PropSource_t xml writing.

2006-02-08 23:59  edwards

	* tests/chroma/hadron/building_blocks/bb-v2.out.xml: Updated
	  regression output to reflect bug in NUCL_U_POL.

2006-02-08 23:50  edwards

	* lib/io/qprop_io.cc: Turned back on printing of j_decay and
	  t_source in PropSource_t

2006-02-08 23:43  edwards

	* lib/meas/hadron/derivmesonseqsrc_w.cc: Hooked in more create
	  functions.

2006-02-08 23:43  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Replaced __func__ with string
	  names since __func__ is now uninteresting.

2006-02-08 22:50  edwards

	* lib/Makefile.am: Added derivmesonseqsrc_w.{h,cc}

2006-02-08 22:50  edwards

	* lib/meas/hadron/: derivmesonseqsrc_w.cc, derivmesonseqsrc_w.h:
	  Initial version that compiles.

2006-02-08 21:30  tag pre-7-chroma2-9-0

2006-02-08 21:30  edwards

	* lib/meas/hadron/: hadron_w.h, hadseqsrc_w.cc,
	  seqsrc_funcmap_w.cc, seqsrc_funcmap_w.h: Obsolete and removed.

2006-02-08 21:25  edwards

	* lib/: io/qprop_io.cc, io/qprop_io.h, meas/hadron/barseqsrc_w.h,
	  meas/hadron/derivmesonseqsrc_w.cc,
	  meas/hadron/derivmesonseqsrc_w.h,
	  meas/hadron/hadron_seqsource.cc, meas/hadron/hadron_seqsource.h,
	  meas/hadron/mesonseqsrc_w.cc, meas/hadron/mesonseqsrc_w.h,
	  meas/hadron/seqsource_aggregate_w.cc,
	  meas/hadron/seqsource_aggregate_w.h,
	  meas/hadron/seqsource_factory_w.h,
	  meas/inline/hadron/inline_bar3ptfn_w.cc,
	  meas/inline/hadron/inline_building_blocks_w.cc,
	  meas/inline/hadron/inline_seqsource_w.cc: Major change in format
	  of seqsource. Now is input driven and has its own input group.
	  Moved away from funcmap to objfactory

2006-02-08 21:25  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Major change in format of
	  seqsource. Now is input driven and has its input. Bug fix in
	  NUCL_U_POL

2006-02-08 21:24  edwards

	* lib/util/ferm/antisymtensor.cc: Changed init to integers

2006-02-08 21:23  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  fermacts/unprec_w12_fermact_w.cc,
	  fermacts/unprec_w12_fermact_w.h, linop/unprec_w12_linop_w.cc,
	  linop/unprec_w12_linop_w.h: Added W12 action

2006-02-08 21:22  edwards

	* lib/actions/ferm/linop/unprec_hamberwu_linop_w.cc: Added doxygen
	  comment.

2006-02-08 21:21  edwards

	* lib/Makefile.am: Added new hadron_sequential source factories and
	  registration. Added unprec W12 action.

2006-02-08 21:19  edwards

	* tests/chroma/hadron/seqsource/: regres.pl, seqsource-v2.ini.xml,
	  seqsource-v2.metric.xml, seqsource-v2.out.xml: Split off
	  regression tests to a meson and baryon file.	There is a bug fix
	  in NUCL_U_POL that is now reflected in the change of the
	  canonical test file.

2006-02-08 21:09  edwards

	* tests/chroma/hadron/seqsource/: seqsource-meson-v1.ini.xml,
	  seqsource-meson-v1.metric.xml, seqsource-meson-v1.out.xml: Fixed
	  test.

2006-02-08 21:02  edwards

	* tests/chroma/hadron/seqsource/: regres.pl,
	  seqsource-baryon-v1.ini.xml, seqsource-baryon-v1.metric.xml,
	  seqsource-baryon-v1.out.xml, seqsource-meson-v1.ini.xml,
	  seqsource-meson-v1.metric.xml, seqsource-meson-v1.out.xml: New
	  regression tests.

2006-02-07 06:55  egregory

	* lib/meas/hadron/loops_s.h: added checkpointing dump call

2006-02-07 06:54  egregory

	* lib/meas/hadron/ks_local_loops.h: fixed the prototypes to have
	  bool argument for checkpointing measurements CV:
	  ----------------------------------------------------------------------
	  CoVS: Enter Log.  Lines beginning with `CVS:' are removed
	  automaticall

2006-02-06 15:27  egregory

	* lib/meas/hadron/ks_local_loops.cc: fixed fill_volume_source
	  function (is passed pointers for indicies now) and calls to g5 x
	  1 pseudoscalar loop with kilcup variance reduction and added a
	  g5xg5 loop for testing purposes (disconnected diagram should be
	  0)

2006-02-06 15:24  egregory

	* lib/meas/hadron/: pseudoscalar_loops_s.cc,
	  pseudoscalar_loops_s.h: added kilcup variance reduction for
	  gamma5 x gamma5 loop

2006-02-06 14:05  kostas

	* lib/actions/ferm/linop/: polprec_op.h, polynomial_op.h: Initial
	  versions of polynomial preconditioners

2006-02-06 13:15  egregory

	* lib/meas/inline/hadron_s/util_compute_meson_s.cc: removed
	  diagnostic printfs

2006-02-06 13:13  egregory

	* lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: minor
	  changes

2006-02-06 13:11  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: some new input
	  parameters, e.g.: loop_checkpoint

2006-02-06 13:10  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: changes mostly
	  reflect prototype/argument changes for PS loops

2006-02-06 13:08  egregory

	* tests/spectrum_s/spectrum_s.xml: added some boolean parameters,
	  but most importantly changes t_srce to 0 0 0 0

2006-02-04 11:48  edwards

	* lib/io/enum_io/: enum_cfgtype_io.cc, enum_coeffs_io.cc,
	  enum_eigenvectype_io.cc, enum_fermtype_io.cc,
	  enum_gaugeacttype_io.cc, enum_gaugebc_io.cc,
	  enum_heatbathtype_io.cc, enum_inner_solver_type_io.cc,
	  enum_invtype_io.cc, enum_md_integrator_type_io.cc,
	  enum_proptype_io.cc, enum_qdpvolfmt_io.cc,
	  enum_simplebctype_io.cc, enum_srcsnktype_io.cc,
	  enum_stochsrc_io.cc, enum_wavetype_io.cc, enum_wvfkind_io.cc:
	  Added doxygen comments.

2006-02-04 11:42  edwards

	* lib/io/enum_io/: enum_cfgtype_io.h, enum_coeffs_io.h,
	  enum_eigenvectype_io.h, enum_fermtype_io.h,
	  enum_gaugeacttype_io.h, enum_gaugebc_io.h,
	  enum_heatbathtype_io.h, enum_inner_solver_type_io.h,
	  enum_invtype_io.h, enum_md_integrator_type_io.h,
	  enum_proptype_io.h, enum_qdpvolfmt_io.h, enum_quarkspintype_io.h,
	  enum_simplebctype_io.h, enum_srcsnktype_io.h, enum_stochsrc_io.h,
	  enum_wavetype_io.h, enum_wvfkind_io.h: Added doxygen comments.

2006-02-04 11:25  edwards

	* lib/io/enum_io/enum_type_map.h: Added doxygen comments.

2006-02-04 11:11  edwards

	* scripts/build.sh: Updated the script

2006-02-04 06:19  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have macroed out a call to
	  ks_loops. The arguments need to be updated.

2006-02-03 09:38  egregory

	* lib/meas/hadron/pions_s.h: changed gauge field to const in
	  argument

2006-02-03 09:36  egregory

	* lib/Makefile.am: added entry for util_compute_8_pions_s.cc

2006-02-03 09:33  egregory

	* lib/meas/inline/hadron_s/util_compute_8_pions_s.cc: added new
	  file for 8 pion tastes

2006-02-03 09:29  egregory

	* lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc: removed
	  extraneous printf

2006-02-03 09:26  egregory

	* lib/meas/inline/hadron_s/util_compute_meson_s.h: changes to
	  accompany changes to util_compute_meson_s.cc

2006-02-03 09:26  egregory

	* lib/meas/inline/hadron_s/util_compute_meson_s.cc: added arguments
	  to explicitly specify type of shift

2006-02-03 09:25  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: added call to 8
	  pseudoscalars

2006-02-02 13:45  edwards

	* lib/update/molecdyn/hmc/global_metropolis_accrej.cc: More doxygen

2006-02-02 13:44  edwards

	* lib/update/molecdyn/hmc/: global_metropolis_accrej.cc,
	  global_metropolis_accrej.h: Added doxygen comments.

2006-02-02 13:39  edwards

	* lib/update/molecdyn/integrator/: integrator_aggregate.h,
	  lcm_integrator_leaps.h, lcm_minimum_norm2_integrator.h,
	  lcm_sexton_weingarten.h, lcm_sw_min_mixed.h: Added some doxygen
	  comments.

2006-02-02 11:46  egregory

	* tests/spectrum_s/spectrum_s.xml: has new parameters

2006-02-02 11:44  egregory

	* lib/meas/hadron/stag_propShift_s.cc: fixed some bugs in the
	  symmetric shifting.

2006-02-02 11:43  egregory

	* lib/meas/hadron/ks_local_loops.h: Added version w/o smearing
	  arguments, to save memory.

2006-02-02 11:42  egregory

	* lib/meas/hadron/ks_local_loops.cc: Added the gaussian dilution
	  schemes.

2006-02-02 11:29  egregory

	* lib/meas/inline/hadron_s/util_compute_singlet_ps.cc: some
	  streamlining, and source-shift compatibility check.

2006-02-02 11:27  egregory

	* lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc: added
	  seperate fuzzing and non-fuzzing versions so can use less memory
	  when not fuzzing. also checks compatability between source type
	  and shift type.

2006-02-02 11:25  egregory

	* lib/meas/inline/hadron_s/util_compute_meson_s.cc: some printfs
	  for debugging. have to remove these when fixed.

2006-02-02 11:23  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: added some new
	  input params to cgo with changes to inline_spectrum_s.cc

2006-02-02 11:22  egregory

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: reorganized for
	  better memory use and better clarity

2006-02-01 09:35  mcneile

	* lib/io/enum_io/enum_stochsrc_io.cc: Updated with Eric's enums.

2006-01-31 09:33  mcneile

	* lib/Makefile.am: I have added Eric's diluted gaussian code.

2006-01-31 09:31  mcneile

	* lib/meas/hadron/enum_loops_s.h: I have added more enums for Eric
	  Gregory's diluted gaussian sources.

2006-01-31 09:29  mcneile

	* lib/meas/sources/: dilute_gauss_src_s.cc, dilute_gauss_src_s.h:
	  Eric Gregory's code to dilute gaussian sources. This uses an
	  older chroma style to that used for the dilute Z2 sources.

2006-01-29 00:23  edwards

	* lib/Makefile.am: Added antisym and symmetric tensor.

2006-01-29 00:21  edwards

	* lib/util/ferm/: antisymtensor.cc, antisymtensor.h, symtensor.cc,
	  symtensor.h: New files.

2006-01-29 00:20  edwards

	* lib/util/ferm/gammasgn_w.cc: Put hidden data in private
	  namespace.

2006-01-29 00:18  edwards

	* tests/chroma/hadron/propagator/: prec_clover-v9.out.xml,
	  unprec_clover-v9.out.xml: Updated regression tests for change of
	  conventions.

2006-01-26 15:04  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Rescale clover
	  coefficient by aniso factor and also 1/2 due to conventions.

2006-01-25 11:50  edwards

	* lib/meas/inline/: inline_aggregate.cc, make_xml_file.cc: Removed
	  dosisms.

2006-01-25 00:54  edwards

	* tests/regres.pl: New bb regression test.

2006-01-25 00:52  edwards

	* tests/chroma/hadron/building_blocks/: bb-v2.dat.xml,
	  bb-v2.ini.xml, bb-v2.metric.xml, bb-v2.out.xml, regres.pl: New
	  regression test.

2006-01-25 00:08  tag pre-6-chroma2-9-0

2006-01-25 00:08  edwards

	* mainprogs/main/hmc.cc: Added simple diagnostic output.

2006-01-20 13:46  bjoo

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Need for fixup hacks
	  resolved. Turns out indices dont need to be transposed for gauge
	  field access only in multi2d since gauge field layout is the same
	  between SZIN and chroma. Apropriate changes made and hack
	  warnings removed

2006-01-17 21:12  tag pre-5-chroma2-9-0

2006-01-17 21:12  bjoo

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: clarified a comment

2006-01-17 21:07  bjoo

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Removed a line of
	  debug info

2006-01-17 20:58  bjoo

	* tests/chroma/hadron/propagator/: prec_clover-v9.out.xml,
	  unprec_clover-v9.out.xml: Updated regression test files to fit
	  changes with new clover term.

2006-01-17 20:53  bjoo

	* lib/actions/ferm/: fermacts/clover_fermact_params_w.cc,
	  linop/clover_term_base_w.h, linop/clover_term_qdp_w.cc,
	  linop/clover_term_qdp_w.h: Hacked Clover until unprec Clover
	  works

2006-01-17 17:03  edwards

	* lib/meas/hadron/baryon_w.cc: Comment change.

2006-01-17 11:01  bjoo

	* lib/: chromabase.h, fermact.h,
	  actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  actions/ferm/fermacts/prec_clover_fermact_w.h,
	  actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h,
	  actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial5d_w.h,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_one_flavor_rat_monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial5d_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_monomial_w.h,
	  update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  update/molecdyn/monomial/two_flavor_monomial_w.h: Rehashed
	  Fermacts to have constDet and logDet. Rehashed Monomials to have
	  constDet monomials use only constDet fermacts.

2006-01-16 00:23  bjoo

	* aclocal.m4: Autoconf fixup

2006-01-15 21:10  bjoo

	* lib/: Makefile.am,
	  update/molecdyn/monomial/monomial_aggregate_w.cc,
	  update/molecdyn/monomial/monomial_w.h,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/prec_constdet_two_flavor_hasenbusch_monomial_w.h,
	  update/molecdyn/monomial/prec_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_hasenbusch_monomial_w.h,
	  update/molecdyn/monomial/two_flavor_hasenbusch_monomial_w.h:
	  Moved prec hasenbusch to prec constdet hasenbusch

2006-01-15 19:58  bjoo

	* tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.xml.ini: Ooops ...
	  now removed

2006-01-15 19:56  bjoo

	* Makefile.am, lib/Makefile.am, mainprogs/main/Makefile.am,
	  tests/regres.pl, tests/chroma/chroma_simple.xml.ini,
	  tests/t_leapfrog/regres.pl: A big commit step 1

2006-01-15 19:33  bjoo

	* lib/update/molecdyn/monomial/: monomial_aggregate_w.cc,
	  monomial_w.h, one_flavor_rat_monomial5d_w.h,
	  one_flavor_rat_monomial_w.h,
	  prec_constdet_one_flavor_rat_monomial5d_w.cc,
	  prec_constdet_one_flavor_rat_monomial5d_w.h,
	  prec_constdet_one_flavor_rat_monomial_w.cc,
	  prec_constdet_one_flavor_rat_monomial_w.h,
	  prec_constdet_two_flavor_monomial5d_w.cc,
	  prec_constdet_two_flavor_monomial5d_w.h,
	  prec_constdet_two_flavor_monomial_w.cc,
	  prec_constdet_two_flavor_monomial_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  prec_two_flavor_monomial5d_w.cc, prec_two_flavor_monomial5d_w.h,
	  prec_two_flavor_monomial_w.cc, prec_two_flavor_monomial_w.h,
	  two_flavor_monomial5d_w.h, two_flavor_monomial_w.h: Moved
	  prec_two_flavor to prec_constdet_two_flavor. Moved
	  prec_one_flavor to prec_constdet_one_flavor

2006-01-15 16:09  bjoo

	* tests/t_leapfrog/: regres.pl,
	  t_leapfrog.prec_1flav_wilson.ini.xml,
	  t_leapfrog.prec_1flav_wilson.metric.xml,
	  t_leapfrog.prec_1flav_wilson.out.xml: Added Preconditioned 1
	  flavour XML files and test case

2006-01-14 01:42  edwards

	* lib/update/molecdyn/monomial/: one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_two_flavor_monomial5d_w.cc, prec_two_flavor_monomial5d_w.h,
	  two_flavor_monomial5d_w.h, unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_two_flavor_monomial5d_w.cc,
	  unprec_two_flavor_monomial5d_w.h: Moved getX() and getXPV() and
	  invert up to base class.

2006-01-14 01:07  tag pre-4-chroma2-9-0

2006-01-14 01:07  edwards

	* lib/update/molecdyn/monomial/: one_flavor_rat_monomial_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h: Pulled getX() function to
	  base class.

2006-01-14 00:56  edwards

	* lib/update/molecdyn/monomial/: prec_two_flavor_monomial_w.cc,
	  prec_two_flavor_monomial_w.h, two_flavor_monomial_w.h,
	  unprec_two_flavor_monomial_w.cc, unprec_two_flavor_monomial_w.h:
	  Pulled getX() and invert() out of eoprec/unprec monom. and pushed
	  up to base TwoFlavorMonomial class.

2006-01-14 00:22  tag pre-3-chroma2-9-0

2006-01-14 00:22  edwards

	* lib/Makefile.am: Added monomial param readers.

2006-01-14 00:22  edwards

	* lib/update/molecdyn/monomial/:
	  one_flavor_rat_monomial5d_params_w.cc,
	  one_flavor_rat_monomial5d_params_w.h,
	  one_flavor_rat_monomial_params_w.cc,
	  one_flavor_rat_monomial_params_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  prec_two_flavor_hasenbusch_monomial_w.cc,
	  prec_two_flavor_hasenbusch_monomial_w.h,
	  prec_two_flavor_monomial5d_w.cc, prec_two_flavor_monomial5d_w.h,
	  prec_two_flavor_monomial_w.cc, prec_two_flavor_monomial_w.h,
	  two_flavor_hasenbusch_monomial_params_w.cc,
	  two_flavor_hasenbusch_monomial_params_w.h,
	  two_flavor_monomial_params_w.cc, two_flavor_monomial_params_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h,
	  unprec_two_flavor_hasenbusch_monomial_w.cc,
	  unprec_two_flavor_hasenbusch_monomial_w.h,
	  unprec_two_flavor_monomial5d_w.cc,
	  unprec_two_flavor_monomial5d_w.h,
	  unprec_two_flavor_monomial_w.cc, unprec_two_flavor_monomial_w.h:
	  Consolidated parameter reading into small units between unprec
	  and prec variants. In the two-flavor monomial case, the params is
	  shared between 4d and 5d as well.

2006-01-13 14:55  tag pre-2-chroma2-9-0

2006-01-13 14:55  edwards

	* install_scripts/jlab/build_some_k2.6.csh: Build stuff

2006-01-12 11:51  bjoo

	* lib/: Makefile.am, actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/fermacts/fermacts_w.h,
	  update/molecdyn/monomial/prec_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_monomial_w.cc,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_hasenbusch_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc: Merged
	  in Roberts recent changes and disabled stouting

2006-01-12 00:45  edwards

	* lib/: fermact.h, lmdagm.h,
	  actions/ferm/fermacts/asqtad_fermact_s.cc,
	  actions/ferm/fermacts/asqtad_fermact_s.h,
	  actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  actions/ferm/fermacts/prec_clover_fermact_w.h,
	  actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/prec_stout_fermact_array_w.h,
	  actions/ferm/fermacts/prec_stout_fermact_w.h,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  actions/ferm/fermacts/stag_fermact_s.h,
	  actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  actions/ferm/fermacts/unprec_hamberwu_fermact_w.cc,
	  actions/ferm/fermacts/unprec_hamberwu_fermact_w.h,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/unprec_stout_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_stout_fermact_w.h,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  actions/ferm/linop/asqtad_mdagm_s.h, actions/ferm/linop/lmdagm.h,
	  actions/ferm/linop/lovddag_double_pass_w.h,
	  actions/ferm/linop/lovddag_w.h, actions/ferm/linop/lovlapms_w.h,
	  meas/inline/eig/inline_eigbnds.cc,
	  update/molecdyn/monomial/prec_one_flavor_rat_monomial5d_w.cc,
	  update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc: A
	  refactoring. Promoted lmdagm to be (finally) a default
	  implementation for all the lMdagM() functions within the
	  fermacts. Changed the lMdagM() fermact calls to a covariant
	  return of DiffLinearOperator<> . This critter now knows how to
	  take a derivative of its held op. Removed all the lMdagM()
	  functions in the derived/concrete fermions. Promoted the overlap
	  lmdagm-ish guys to DiffLinearOperator - this is necessary for
	  HMC.

2006-01-12 00:41  edwards

	* lib/Makefile.am: Moved lmdagm to chroma/lib

2006-01-09 17:37  tag pre-1-chroma-2-9

2006-01-09 17:37  bjoo

	* aclocal.m4, lib/Makefile.am, lib/eo_prec_linop.h, lib/fermact.h,
	  lib/linearop.h, lib/prec_constdet_linop.h,
	  lib/prec_logdet_linop.h,
	  lib/actions/ferm/linop/prec_clover_linop_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  tests/chroma/hadron/building_blocks/bb-v2.dat.xml: Broke out Even
	  odd preconditioning for the now into a separate eo_prec linop.h
	  also created prec_constdet_linop.h and prec_logdet_linop.h and
	  reworked the linear operators. Fermacts and monomials next

2006-01-06 15:13  tag chroma2-8-3

2006-01-06 15:13  edwards

	* NEWS: Info on 2.8.3

2006-01-05 11:34  kostas

	* lib/meas/hadron/: barspinmat_w.cc, barspinmat_w.h: slipped spin
	  up to spin down for the negative parity mixed projector

2006-01-04 15:24  mcneile

	* scripts/: makemake_chroma.sh, makemake_qdp.sh, makemake_qmp.sh:
	  makemake.sh for the chroma qdp++ and qmp modules.  Each one of
	  these files was a script in the subdirectory chroma qdp++ or qmp

2006-01-03 22:39  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2006-01-03 22:18  tag chroma2-8-2

2006-01-03 22:18  edwards

	* NEWS: Info on 2.8.2

2006-01-03 22:17  edwards

	* tests/chroma/hadron/propagator/regres.pl: Turn clover tests back
	  on.

2006-01-03 22:15  edwards

	* aclocal.m4, configure: Induced changes.

2006-01-03 22:15  edwards

	* lib/Makefile.am: Turned clover back on.

2006-01-03 22:10  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Turn clover
	  back on.

2006-01-03 22:09  edwards

	* lib/actions/ferm/linop/clover_term_base_w.h: Added missing
	  abstract func defs (here, I was missing the "=0" on choles and
	  cholesDet.

2006-01-03 22:09  edwards

	* lib/actions/ferm/linop/: clover_term_qdp_w.cc,
	  clover_term_qdp_w.h: Added default constructor.

2006-01-03 16:18  tag chroma2-8-1

2006-01-03 16:18  edwards

	* mainprogs/main/Makefile.am: Rearranged chroma and hmc builds.

2006-01-03 15:47  edwards

	* NEWS: Info on 2.8.1

2006-01-03 10:57  bjoo

	* other_libs/intel_sse_wilson_dslash/src/parscalar/:
	  32bit/dslash/sse_su3dslash_w.c, 64bit/dslash/sse_su3dslash_w.c:
	  Refined lattice size checks in parscalar code to allow 1 in the x
	  direction for single node - fake parscalar - builds

2006-01-03 09:45  bjoo

	* tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.metric.xml:
	  Oops forgot to add this metric

2006-01-03 09:28  bjoo

	* tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.out.xml:
	  Oops should have added this before

2006-01-03 00:50  bjoo

	* Makefile.am, configure, configure.ac: Autoconf magic to locate
	  xmldiff

2006-01-03 00:49  bjoo

	* scripts/run_chroma_xmldiff.pl: Do It

2006-01-03 00:03  bjoo

	* tests/: chroma/hadron/propagator/regres.pl, t_leapfrog/regres.pl:
	  Fixed the regression test script - it was my own fault - I broke
	  it this morning

2006-01-02 23:02  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/linop/clover_term_base_w.h,
	  scripts/run_chroma_xmldiff.pl,
	  tests/t_leapfrog/t_leapfrog.unprec_hasenbusch_wilson.ini.xml,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.xml.ini: Disabled
	  Clover. Code now builds. I can run individual regressions
	  manually, but make xcheck always fails. I dunno why

2006-01-02 15:50  bjoo

	* lib/update/molecdyn/monomial/: monomial_aggregate_w.cc,
	  monomial_w.h, prec_two_flavor_hasenbusch_monomial_w.cc,
	  prec_two_flavor_hasenbusch_monomial_w.h,
	  two_flavor_hasenbusch_monomial_w.h: Added 4D Wilson Type Unprec
	  and EvenOdd Prec monomials

2006-01-02 15:49  bjoo

	* tests/t_leapfrog/: t_leapfrog.prec_hasenbusch_wilson.ini.xml,
	  t_leapfrog.prec_hasenbusch_wilson.metric.xml,
	  t_leapfrog.prec_hasenbusch_wilson.out.xml: Input output and
	  metric files for even-odd prec hasenbuschery

2006-01-02 15:23  bjoo

	* lib/update/molecdyn/monomial/: monomial_aggregate_w.cc,
	  monomial_w.h, prec_two_flavor_monomial_w.h,
	  two_flavor_hasenbusch_monomial_w.h, two_flavor_monomial_w.h,
	  unprec_two_flavor_hasenbusch_monomial_w.cc,
	  unprec_two_flavor_hasenbusch_monomial_w.h,
	  unprec_two_flavor_monomial_w.cc, unprec_two_flavor_monomial_w.h:
	  Added unpreconditioned Hasenbusch Monomial

2006-01-02 15:19  bjoo

	* tests/t_leapfrog/: t_leapfrog.unprec_wilson.ini.xml,
	  t_leapfrog.unprec_wilson.metric.xml,
	  t_leapfrog.unprec_wilson.out.xml: Added regression input, output
	  and metric for unprec wilson. Removed old unprec wilson xml file
	  as it didnt work

2006-01-01 00:16  tag chroma2-8-0

2006-01-01 00:16  edwards

	* configure: Induced changes.

2006-01-01 00:15  edwards

	* aclocal.m4: INduced changes.

2006-01-01 00:14  edwards

	* configure.ac: Changed to 2.8.0

2006-01-01 00:14  edwards

	* NEWS: Info on 2.8.0

2006-01-01 00:12  edwards

	* docs/notes/N_N_5d_ov.tex: Removed stuff

2006-01-01 00:12  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  linop/clover_term_base_w.cc, linop/clover_term_base_w.h,
	  linop/clover_term_qdp_w.cc, linop/clover_term_qdp_w.h,
	  linop/prec_clover_linop_w.cc, linop/prec_clover_linop_w.h: Added
	  clover.

2006-01-01 00:12  edwards

	* tests/t_precact/t_precact.clover.ini.xml: New clover tests.

2006-01-01 00:11  edwards

	* tests/chroma/hadron/propagator/: prec_clover-v9.metric.xml,
	  regres.pl, unprec_clover-v9.metric.xml: Added clover regression
	  tests.

2006-01-01 00:09  edwards

	* tests/chroma/hadron/propagator/: prec_clover-v9.ini.xml,
	  prec_clover-v9.out.xml, unprec_clover-v9.ini.xml,
	  unprec_clover-v9.out.xml: New regression tests

2005-12-30 15:44  kostas

	* lib/Makefile.am, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: fixed automake stuff for altivec

2005-12-30 15:28  kostas

	* aclocal.m4, configure, configure.ac,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_altivec_w.h,
	  other_libs/Makefile.am: added altivec dwf cg inverter. This is a
	  modification of A. Pochinsky's SSE DWF CG

2005-12-30 12:13  bjoo

	* docs/notes/partfrac5D.tex: Removed partfrac5D.tex

2005-12-29 00:43  edwards

	* aclocal.m4, configure: Induced changes.

2005-12-29 00:40  edwards

	* mainprogs/tests/: t_precact.cc, t_precact_4d.cc, t_precact_5d.cc:
	  Split old t_precact.cc into a separate 4d and 5d version.

2005-12-29 00:40  edwards

	* mainprogs/tests/Makefile.am: Moved t_precact.cc to a new
	  t_precact_4d.cc and the newer named t_precact_5d.cc

2005-12-29 00:37  edwards

	* lib/actions/ferm/linop/: clover_term_qdp_w.cc,
	  clover_term_qdp_w.h, prec_clover_linop_w.cc,
	  unprec_clover_linop_w.cc: Several fixes. The derivative is not
	  working yet.

2005-12-29 00:36  edwards

	* lib/actions/ferm/fermacts/unprec_clover_fermact_w.h: Added
	  doxygen comment.

2005-12-29 00:36  edwards

	* lib/actions/ferm/fermacts/: prec_clover_fermact_w.cc,
	  prec_clover_fermact_w.h: Some fixes to get working.

2005-12-28 22:46  kostas

	* lib/io/writeszin.cc: fixed writeSzinTrunc precision bug

2005-12-27 20:33  kostas

	* tests/chroma/hadron/qqqNucNuc/: qqqNucNuc-v1.ini.xml,
	  qqqNucNuc-v1.out.xml: sample xml input for qqqNucNuc

2005-12-27 16:36  kostas

	* lib/meas/inline/hadron/: inline_hadron_aggregate.cc,
	  inline_qqqNucNuc_w.cc, inline_qqqNucNuc_w.h: implemented named
	  object stuff in qqqNucNuc

2005-12-27 15:41  kostas

	* aclocal.m4, lib/Makefile.am, lib/meas/hadron/hadron_w.h,
	  lib/meas/hadron/qqbar_w.cc, lib/meas/hadron/qqbar_w.h,
	  lib/meas/hadron/qqq_w.cc, lib/meas/hadron/qqq_w.h,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.cc,
	  lib/meas/inline/hadron/inline_qqqNucNuc_w.h: added NPLQCD code

2005-12-27 15:38  edwards

	* tests/chroma/hadron/: spectrum/spectrum-v12.metric.xml,
	  spectrumOct/spectrumOct-v11.metric.xml: Weakened accuracy tests.

2005-12-27 15:32  tag chroma2-7-4

2005-12-27 15:32  edwards

	* NEWS: INfo on 2.7.4

2005-12-26 16:03  edwards

	* tests/chroma/hadron/mres/mres-v1.metric.xml: Slightly weakened
	  metric tests.

2005-12-26 15:25  edwards

	* tests/chroma/hadron/mres/: mres-v1.ini.xml, mres-v1.out.xml:
	  Updated tests.

2005-12-26 15:19  edwards

	* lib/meas/hadron/barhqlq_w.cc: Fixed a call of lambdaNaive2pt.
	  Also multiply back in goofy factor of 4 normalization in CgmNR
	  usage.

2005-12-25 13:43  tag chroma2-7-3

2005-12-25 13:43  edwards

	* NEWS: Info on 2.7.3

2005-12-25 13:41  edwards

	* tests/: regres.pl, chroma/smear/link_smear/link_smear.metric.xml,
	  chroma/smear/link_smear/regres.pl: Added link smearing
	  regression.

2005-12-25 13:29  edwards

	* tests/: regres.pl, chroma/hadron/mres/mres-v1.ini.xml,
	  chroma/hadron/mres/mres-v1.metric.xml,
	  chroma/hadron/mres/mres-v1.out.xml, chroma/hadron/mres/regres.pl:
	  Now have mres regression tests.

2005-12-25 13:22  edwards

	* tests/chroma/hadron/: propagator/prec_wilson-v9.ferm.ini.xml,
	  propagator/prec_wilson-v9.ferm.out.xml, qqbar/qqbar-v4.ini.xml,
	  qqbar/qqbar-v4.out.xml, qqq/qqq-v4.ini.xml, qqq/qqq-v4.out.xml,
	  sink_smear/sink_smearing-v5.ini.xml,
	  sink_smear/sink_smearing-v5.out.xml: Switched from dirichlet to
	  anit-per. BC in time.

2005-12-25 13:18  edwards

	* tests/chroma/hadron/: spectrum/spectrum-v12.ini.xml,
	  spectrum/spectrum-v12.out.xml,
	  spectrumOct/spectrumOct-v11.ini.xml,
	  spectrumOct/spectrumOct-v11.out.xml: Changed from dirichlet to
	  anti-periodic BC in time.

2005-12-25 01:51  tag chroma2-7-2

2005-12-25 01:51  edwards

	* tests/chroma/hadron/spectrumOct/regres.pl: Fixed directory of
	  tests.

2005-12-25 00:43  edwards

	* NEWS: Info on 2.7.2

2005-12-25 00:41  edwards

	* lib/meas/hadron/barhqlq_w.cc: Updated to use new baryon spin
	  mats. Abstracted out functions.

2005-12-25 00:08  edwards

	* lib/meas/inline/hadron/: inline_spectrumOct_w.cc,
	  inline_spectrumOct_w.h, inline_spectrum_w.cc: Updated for new
	  output.

2005-12-25 00:08  edwards

	* tests/: regres.pl,
	  chroma/hadron/spectrumOct/spectrumOct-v11.metric.xml,
	  chroma/hadron/spectrumOct/spectrumOct-v11.out.xml: New regression
	  tests.

2005-12-24 23:33  edwards

	* tests/chroma/hadron/spectrumOct/: regres.pl,
	  spectrumOct-v11.ini.xml, spectrumOct-v11.metric.xml,
	  spectrumOct-v11.out.xml: Added spectrumOct tests.

2005-12-24 23:32  edwards

	* tests/chroma/hadron/spectrum/spectrum-v12.out.xml: Updated

2005-12-24 16:42  edwards

	* tests/chroma/hadron/spectrum/: spectrum-v12.metric.xml,
	  spectrum-v12.out.xml: Added negative parity.

2005-12-24 16:39  edwards

	* lib/meas/hadron/baryon_w.cc: Added negative parity as output.

2005-12-24 16:20  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barspinmat_w.cc,
	  barspinmat_w.h, baryon_w.cc: Added new barspinmatrices . This is
	  the new home of all the funky baryon spin matrices. Moved
	  barseqsrc and baryon over to the new format.

2005-12-24 16:18  edwards

	* lib/Makefile.am: Added barspinmat_w.{h,cc}

2005-12-24 16:18  edwards

	* tests/chroma/hadron/seqsource/seqsource-v2.out.xml: Changed
	  regression output to match new code output.  NOTE: there is a
	  normalization change in the delta code.

2005-12-24 15:53  edwards

	* tests/chroma/hadron/spectrum/spectrum-v12.out.xml: Updated
	  regression tests.

2005-12-24 11:31  edwards

	* scripts/run_chroma_xmldiff.pl: Moved list of regression dirs to
	  chroma/tests/regres.pl .

2005-12-24 11:30  edwards

	* tests/regres.pl: New top level regression dir.

2005-12-24 11:16  edwards

	* scripts/run_chroma_xmldiff.pl: Added missing comma in do_list.

2005-12-23 19:44  edwards

	* tests/chroma/hadron/spectrum/spectrum-v12.metric.xml: Extended
	  tests.

2005-12-23 19:36  edwards

	* tests/chroma/hadron/spectrum/: regres.pl, spectrum.dat.xml: New
	  regression test.

2005-12-23 19:36  edwards

	* scripts/run_chroma_xmldiff.pl: Added spectrum regression test

2005-12-23 19:34  edwards

	* tests/chroma/hadron/spectrum/: spectrum-v12.ini.xml,
	  spectrum-v12.metric.xml, spectrum-v12.out.xml, spectrum.dat.xml:
	  New regression tests

2005-12-22 17:26  bjoo

	* lib/actions/ferm/linop/lwldslash_array_pab_w.h: Fixed Kostas
	  Unresolved Symbol Problem

2005-12-21 16:56  kostas

	* lib/meas/hadron/barseqsrc_w.cc: added the XIXI axial charge
	  source

2005-12-21 11:18  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Rearranged where the delta stuff
	  resides

2005-12-21 10:38  kostas

	* lib/actions/ferm/qprop/quarkprop4_w.cc: corrected a minus sign
	  when doing the lower componenets

2005-12-21 10:37  kostas

	* lib/meas/hadron/barseqsrc_w.cc: added negative parity sources

2005-12-21 09:50  kostas

	* lib/actions/ferm/linop/lwldslash_w_pab.cc: corrected a typo bug

2005-12-21 00:17  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Simplified nucl cases to
	  construct standard Cg5 and T terms to feed to a generic U and D
	  insertion calculation.

2005-12-21 00:11  edwards

	* tests/chroma/hadron/seqsource/: seqsource-v2.ini.xml,
	  seqsource-v2.metric.xml, seqsource-v2.out.xml: Added
	  NUCL_PATCH_MIXED_NONREL

2005-12-20 22:42  tag chroma2-7-1

2005-12-20 22:42  edwards

	* NEWS: Info on 2.7.1

2005-12-20 15:37  edwards

	* tests/chroma/hadron/seqsource/: seqsource-v2.ini.xml,
	  seqsource-v2.metric.xml, seqsource-v2.out.xml: Updated regression
	  test. Now tests all baryon seqsources.

2005-12-20 15:10  edwards

	* tests/purgaug/: purgaug.metric.xml, regres.pl: More tests.

2005-12-20 14:32  edwards

	* scripts/build.sh: Put in link check. Turned on default mail.

2005-12-20 14:30  edwards

	* lib/actions/ferm/linop/lwldslash_w.cc: Added missing default
	  (empty) constructor.

2005-12-20 14:23  edwards

	* lib/io/writeszin.cc: Now support case of  t_end < t_start. This
	  means walking off the lattice, so no now the code appropriately
	  mods within the boundaries.

2005-12-20 14:23  edwards

	* tests/chroma/io/szin_write_obj/: szin_write_obj.ini.xml,
	  szin_write_obj.out.xml: Update tests.

2005-12-20 10:48  edwards

	* scripts/link.pl: Added link script

2005-12-19 23:09  edwards

	* scripts/build.sh: Short term changes.

2005-12-19 22:22  edwards

	* scripts/run_chroma_xmldiff.pl: Added fixing of absolute paths.

2005-12-19 21:22  edwards

	* scripts/run_chroma_xmldiff.pl: Little changes.

2005-12-19 21:21  edwards

	* Makefile.am, mainprogs/tests/Makefile.am: Moved xcheck to top
	  level Makefile.am

2005-12-19 15:01  edwards

	* mainprogs/tests/Makefile.am: Changed args for xcheck. Need to add
	  staggered tests back into the regression suite.

2005-12-18 23:29  tag chroma2-7-0

2005-12-18 23:29  edwards

	* mainprogs/tests/Makefile.am: MOved t_leapfrog to bin programs.

2005-12-18 23:27  edwards

	* scripts/run_chroma_xmldiff.pl: Uncommented out tests

2005-12-18 21:26  edwards

	* lib/actions/ferm/linop/clover_term_qdp_w.cc: Commented out for
	  the moment.

2005-12-18 18:56  edwards

	* tests/: chroma/hadron/make_source/dilute.metric.xml,
	  chroma/hadron/make_source/make_source-v6.metric.xml,
	  chroma/hadron/seqsource/seqsource-v2.metric.xml,
	  stoch_meson/stoch_meson.eo.ini.xml: New regression tests.

2005-12-18 18:54  edwards

	* scripts/run_chroma_xmldiff.pl: New regression test system.

2005-12-18 18:54  edwards

	* NEWS: Info on 2.7.0

2005-12-18 18:53  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  linop/chlclovms_w.b.cc, linop/choles.cc,
	  linop/clover_term_base_w.cc, linop/clover_term_base_w.h,
	  linop/clover_term_qdp_w.cc, linop/clover_term_qdp_w.h,
	  linop/clover_term_w.h, linop/lclovmpsim_w.cc,
	  linop/lwldslash_array_pab_w.cc, linop/lwldslash_array_pab_w.h,
	  linop/lwldslash_array_sse_w.cc, linop/lwldslash_array_sse_w.h,
	  linop/lwldslash_array_w.cc, linop/lwldslash_array_w.h,
	  linop/lwldslash_base_array_w.cc, linop/lwldslash_base_array_w.h,
	  linop/lwldslash_base_w.cc, linop/lwldslash_base_w.h,
	  linop/lwldslash_w.cc, linop/lwldslash_w.h,
	  linop/lwldslash_w_pab.cc, linop/lwldslash_w_pab.h,
	  linop/lwldslash_w_sse.cc, linop/lwldslash_w_sse.h,
	  linop/makclov_w.cc, linop/prec_clover_linop_w.cc,
	  linop/prec_clover_linop_w.h, linop/prec_dwf_linop_array_w.cc,
	  linop/prec_wilson_linop_w.cc, linop/unprec_clover_linop_w.cc,
	  linop/unprec_clover_linop_w.h, linop/unprec_dwf_linop_array_w.cc,
	  linop/unprec_wilson_linop_w.cc, linop/unprec_wilson_linop_w.h:
	  Overhauled aniso support. Move the init'ing of gauge fields down
	  in the Wilson and WilsonArray dslashes. Start of real clover
	  support. Removed old clover files. New regression test support.

2005-12-18 18:51  edwards

	* tests/: chroma/hadron/make_source/regres.pl,
	  chroma/hadron/propagator/prec_dwf-v9.metric.xml,
	  chroma/hadron/propagator/prec_parwilson-v9.metric.xml,
	  chroma/hadron/propagator/prec_wilson-twisted-v9.metric.xml,
	  chroma/hadron/propagator/prec_wilson-v9.metric.xml,
	  chroma/hadron/propagator/regres.pl,
	  chroma/hadron/propagator/unprec-ovlap-zolo4d-v9.metric.xml,
	  chroma/hadron/propagator/unprec_hamberwu-v9.metric.xml,
	  chroma/hadron/seqsource/regres.pl,
	  chroma/smear/hyp_smear/hyp_smear_v4.ini.xml,
	  t_leapfrog/regres.pl, t_leapfrog/t_leapfrog.prec_dwf.ini.xml,
	  t_leapfrog/t_leapfrog.prec_dwf.metric.xml,
	  t_leapfrog/t_leapfrog.prec_dwf.out.xml,
	  t_leapfrog/t_leapfrog.prec_parwilson.ini.xml,
	  t_leapfrog/t_leapfrog.prec_parwilson.metric.xml,
	  t_leapfrog/t_leapfrog.prec_parwilson.out.xml,
	  t_leapfrog/t_leapfrog.prec_wilson.ini.xml,
	  t_leapfrog/t_leapfrog.prec_wilson.metric.xml,
	  t_leapfrog/t_leapfrog.prec_wilson.out.xml: New regression test
	  files.

2005-12-18 18:48  edwards

	* lib/Makefile.am: Added and removed clover stuff.

2005-12-18 18:47  edwards

	* aclocal.m4, configure: Induced changes.

2005-12-18 18:47  edwards

	* configure.ac: Changed to version 2.7

2005-12-18 18:44  tag chroma2-6-1

2005-12-18 18:44  edwards

	* NEWS: Info on 2.6.1

2005-12-18 16:06  edwards

	* scripts/run_chroma_xmldiff.pl: More changes.

2005-12-18 12:31  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_dwf.ini.xml,
	  t_leapfrog.prec_dwf.out.xml, t_leapfrog.prec_dwf.xml.ini,
	  t_leapfrog.prec_wilson.ini.xml, t_leapfrog.prec_wilson.out.xml,
	  t_leapfrog.prec_wilson.xml.ini: New regression tests.

2005-12-18 12:30  edwards

	* mainprogs/tests/Makefile.am: Moved t_leapfrog back to check
	  programs.

2005-12-18 11:41  edwards

	* tests/purgaug/: purgaug.ini.xml, purgaug.out.xml,
	  purgaug.xml.ini: New regression tests.

2005-12-18 11:31  edwards

	* tests/chroma/chroma_simple.xml.ini: Updated

2005-12-18 11:30  edwards

	* tests/chroma/: eig/eigbnds-v1.ini.xml, eig/eigbnds-v1.out.xml,
	  hadron/bar3ptfn/bar3ptfn-v6.out.xml,
	  hadron/building_blocks/bb-v2.dat.xml,
	  hadron/building_blocks/bb-v2.out.xml,
	  hadron/make_source/dilute.out.xml,
	  hadron/make_source/make_source-v6.out.xml,
	  hadron/mres/mres-v1.out.xml,
	  hadron/noisy_building_blocks/nbb-v1.out.xml,
	  hadron/propagator/prec_dwf-v9.out.xml,
	  hadron/propagator/prec_parwilson-v9.out.xml,
	  hadron/propagator/prec_wilson-twisted-v9.out.xml,
	  hadron/propagator/prec_wilson-v9.ferm.out.xml,
	  hadron/propagator/prec_wilson-v9.out.xml,
	  hadron/propagator/unprec-ovlap-zolo4d-v9.out.xml,
	  hadron/propagator/unprec_hamberwu-v9.out.xml,
	  hadron/qqbar/qqbar-v4.out.xml, hadron/qqq/qqq-v4.out.xml,
	  hadron/seqsource/seqsource-v2.out.xml,
	  hadron/sink_smear/sink_smearing-v5.out.xml,
	  hadron/spectrum/spectrum-v12.out.xml,
	  hadron/spectrum/spectrum.dat.xml,
	  io/nersc_write_obj/nersc_write_obj.ini.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.ini.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.ini.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_read_obj/szin_read_obj.ini.xml,
	  io/szin_read_obj/szin_read_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.ini.xml,
	  io/szin_write_obj/szin_write_obj.out.xml: Updated tests to use
	  WEAK_FIELD instead of a SZIN config.

2005-12-18 11:19  edwards

	* tests/chroma/smear/: ape_smear/ape_smear_v2.ini.xml,
	  ape_smear/ape_smear_v2.out.xml, hyp_smear/hyp_smear_v4.ini.xml,
	  hyp_smear/hyp_smear_v4.out.xml, link_smear/link_smear.ini.xml,
	  link_smear/link_smear.out.xml,
	  stout_smear/stout_smear_v2.ini.xml,
	  stout_smear/stout_smear_v2.out.xml: Updated regression tests.

2005-12-18 11:15  edwards

	* lib/util/gauge/weak_field.cc: Improved (and even fixed)
	  implementation. Now loop over correct su2 embeddings.

2005-12-18 11:00  edwards

	* docs/notes/meson_corr_construct.tex: Added some notes.

2005-12-17 23:27  edwards

	* tests/chroma/hadron/: noisy_building_blocks/nbb-v1.ini.xml,
	  noisy_building_blocks/nbb-v1.out.xml,
	  propagator/prec_wilson-v8.ferm.ini.xml,
	  propagator/prec_wilson-v9.ferm.ini.xml,
	  propagator/prec_wilson-v9.ferm.out.xml, qqbar/qqbar-v4.ini.xml,
	  qqbar/qqbar-v4.out.xml, qqq/qqq-v4.ini.xml, qqq/qqq-v4.out.xml,
	  seqsource/seqsource-v2.ini.xml, seqsource/seqsource-v2.out.xml,
	  sink_smear/sink_smearing-v5.ini.xml,
	  sink_smear/sink_smearing-v5.out.xml,
	  spectrum/spectrum-v12.ini.xml, spectrum/spectrum-v12.out.xml,
	  spectrum/spectrum.dat.xml: Updated regression tests

2005-12-17 23:15  edwards

	* tests/chroma/hadron/: sink_smear/sink_smearing-v5.ini.xml,
	  sink_smear/sink_smearing-v5.out.xml,
	  spectrum/spectrum-v12.ini.xml, spectrum/spectrum-v12.out.xml,
	  spectrum/spectrum.dat.xml: Updated regression tests

2005-12-17 23:14  edwards

	* tests/chroma/hadron/seqsource/: seqsource-v2.ini.xml,
	  seqsource-v2.out.xml: Updated regression tests.

2005-12-17 23:10  edwards

	* tests/chroma/hadron/: noisy_building_blocks/nbb-v1.ini.xml,
	  noisy_building_blocks/nbb-v1.out.xml, qqbar/qqbar-v4.ini.xml,
	  qqbar/qqbar-v4.out.xml, qqq/qqq-v4.ini.xml, qqq/qqq-v4.out.xml:
	  Updated regression tests.

2005-12-17 23:06  edwards

	* tests/chroma/hadron/: make_source/dilute.ini.xml,
	  make_source/make_source-v6.ini.xml,
	  make_source/make_source-v6.out.xml, mres/mres-v1.ini.xml,
	  mres/mres-v1.out.xml: Updated regression tests.

2005-12-17 23:04  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn-v6.ini.xml,
	  bar3ptfn-v6.out.xml: Updated tests

2005-12-17 23:02  edwards

	* tests/chroma/hadron/building_blocks/: bb-v2.dat.xml,
	  bb-v2.ini.xml, bb-v2.out.xml: Updated regression test.

2005-12-17 22:58  edwards

	* tests/chroma/hadron/building_blocks/: bb-v2.dat.xml,
	  bb-v2.ini.xml, bb-v2.out.xml: Updated test.

2005-12-17 22:55  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn-v6.ini.xml,
	  bar3ptfn-v6.out.xml: Updated regression test

2005-12-17 22:51  edwards

	* lib/util/gauge/: gauge_startup.cc, weak_field.cc, weak_field.h:
	  Added weak_field option.

2005-12-17 22:49  edwards

	* lib/: Makefile.am, io/enum_io/enum_cfgtype_io.cc,
	  io/enum_io/enum_cfgtype_io.h: Added weak_field

2005-12-17 22:49  edwards

	* tests/chroma/hadron/propagator/: prec_dwf-v9.ini.xml,
	  prec_dwf-v9.out.xml, prec_parwilson-v9.ini.xml,
	  prec_parwilson-v9.out.xml, prec_wilson-v9.ini.xml,
	  prec_wilson-v9.out.xml, unprec_hamberwu-v9.ini.xml,
	  unprec_hamberwu-v9.out.xml: Updated again tests.

2005-12-17 21:45  edwards

	* lib/util/gauge/constgauge.cc: Removed extraneous u[mu]= at end.

2005-12-17 17:46  edwards

	* lib/util/gauge/constgauge.cc: Resize field.

2005-12-17 17:14  edwards

	* tests/chroma/hadron/propagator/: prec_wilson-twisted-v9.out.xml,
	  unprec_hamberwu-v9.ini.xml, unprec_hamberwu-v9.out.xml: Updated

2005-12-17 16:59  edwards

	* tests/chroma/hadron/propagator/: prec_parwilson-v9.ini.xml,
	  prec_parwilson-v9.out.xml, unprec_hamberwu-v9.ini.xml,
	  unprec_hamberwu-v9.out.xml: More tests.

2005-12-17 16:42  edwards

	* tests/chroma/hadron/propagator/: prec_dwf-v9.ini.xml,
	  prec_dwf-v9.out.xml: Updated test

2005-12-17 16:22  edwards

	* tests/chroma/hadron/propagator/: unprec_hamberwu-v8.ini.xml,
	  unprec_hamberwu-v8.out.xml: Removed

2005-12-17 16:00  edwards

	* tests/chroma/hadron/propagator/: prec_wilson-twisted-v7.ini.xml,
	  prec_wilson-twisted-v7.out.xml, prec_wilson-twisted-v9.ini.xml,
	  prec_wilson-twisted-v9.out.xml: Updated tests.

2005-12-17 15:52  edwards

	* tests/chroma/hadron/propagator/: prec_dwf-v9.ini.xml,
	  prec_dwf-v9.out.xml, unprec-ovlap-zolo4d-v8.ini.xml,
	  unprec-ovlap-zolo4d-v8.out.xml, unprec-ovlap-zolo4d-v9.ini.xml,
	  unprec-ovlap-zolo4d-v9.out.xml, unprec_hamberwu-v9.ini.xml,
	  unprec_hamberwu-v9.out.xml: Updated regression tests.

2005-12-17 14:23  edwards

	* tests/chroma/hadron/propagator/: prec_wilson-v9.ini.xml,
	  prec_wilson-v9.out.xml: Modified regression test - use aniso

2005-12-17 13:51  edwards

	* scripts/run_chroma_xmldiff.pl: New regression test.

2005-12-14 23:04  tag chroma2-6-0

2005-12-14 23:04  edwards

	* mainprogs/main/collect_propcomp.cc,
	  tests/chroma/hadron/propagator/prec_wilson-v7.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-v7.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-v9.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-v9.out.xml: New
	  QuarkSpinType to replace the "bool nonRelProp". Now choices of
	  how to compute quark prop - FULL,UPPER,LOWER.

2005-12-14 23:03  edwards

	* lib/: Makefile.am, fermact.h,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  actions/ferm/qprop/quarkprop4_s.cc,
	  actions/ferm/qprop/quarkprop4_s.h,
	  actions/ferm/qprop/quarkprop4_w.cc,
	  actions/ferm/qprop/quarkprop4_w.h, io/qprop_io.cc, io/qprop_io.h,
	  io/enum_io/enum_coeffs_io.cc, io/enum_io/enum_io.h,
	  io/enum_io/enum_quarkspintype_io.cc,
	  io/enum_io/enum_quarkspintype_io.h,
	  meas/inline/hadron/inline_multi_propagator_w.cc,
	  meas/inline/hadron/inline_propagator_w.cc: Added new
	  QuarkSpinType to replace the "bool nonRelProp". Now there are
	  variants of quark spin props - FULL,UPPER,LOWER.

2005-12-14 23:01  edwards

	* aclocal.m4, configure: Induced changes.

2005-12-14 23:01  edwards

	* configure.ac: Changed to 2.6.0

2005-12-14 23:00  edwards

	* NEWS: Info on 2.6.0

2005-12-14 22:57  edwards

	* tests/chroma/hadron/propagator/prec_dwf-v8.ini.xml: Moved to v9

2005-12-14 22:57  edwards

	* tests/chroma/hadron/propagator/: prec_dwf-v9.ini.xml,
	  prec_dwf-v9.out.xml: Updated regression test

2005-12-11 11:40  edwards

	* lib/meas/glue/: mesfield.cc, mesfield.h: Added doxygen comments.

2005-12-11 11:40  edwards

	* lib/meas/glue/mesplq.h: Indented.

2005-12-09 11:56  edwards

	* NEWS: Info on 2.5.5

2005-12-06 23:24  edwards

	* lib/meas/sources/: dilutezN_source_const.cc, pt_source_const.cc,
	  sh_source_const.cc, wall_source_const.cc: Added missing
	  template<> qualifiers on operator().

2005-12-06 22:59  edwards

	* lib/meas/hadron/: hadron_corr_s.h, loops_s.h: Added dummy return
	  statements to make compiler happy.

2005-12-06 22:51  edwards

	* lib/update/molecdyn/: integrator/abs_integrator.h,
	  integrator/lcm_pqp_leapfrog.h,
	  integrator/lcm_sexton_weingarten.h,
	  integrator/lcm_sw_min_mixed.h, predictor/circular_buffer.h:
	  Changed 'const int' to int.

2005-12-06 15:44  osborn

	* lib/meas/sources/rndz2wall_source_const.cc: Changed random Z_2
	  wall source to use uniform random instead of gaussian.

2005-12-05 23:44  edwards

	* lib/meas/smear/gaus_quark_smearing.cc: Added missing template
	  declaration.

2005-12-03 16:23  edwards

	* lib/Makefile.am: Turned clover stuff back on. Split Wilson and
	  Clover parameter reading to their own files.

2005-12-03 16:19  edwards

	* lib/actions/ferm/: fermacts/clover_fermact_params_w.cc,
	  fermacts/clover_fermact_params_w.h,
	  fermacts/prec_clover_fermact_w.cc,
	  fermacts/prec_clover_fermact_w.h,
	  fermacts/prec_wilson_fermact_w.cc,
	  fermacts/prec_wilson_fermact_w.h,
	  fermacts/unprec_clover_fermact_w.cc,
	  fermacts/unprec_clover_fermact_w.h,
	  fermacts/unprec_wilson_fermact_w.cc,
	  fermacts/unprec_wilson_fermact_w.h,
	  fermacts/wilson_fermact_params_w.cc,
	  fermacts/wilson_fermact_params_w.h, linop/prec_clover_linop_w.cc,
	  linop/prec_clover_linop_w.h, linop/unprec_clover_linop_w.cc,
	  linop/unprec_clover_linop_w.h: Split off parameters to their own
	  file. Start of clover.

2005-12-03 13:47  edwards

	* lib/actions/ferm/linop/: unprec_wilson_linop_w.cc,
	  unprec_wilson_linop_w.h: Removed unneed gauge field copy. Removed
	  old now unused code.

2005-12-03 10:32  edwards

	* tests/stoch_meson/create_chroma_xml_eo.csh: Even-odd site
	  dilution.

2005-12-02 23:20  edwards

	* lib/Makefile.am,
	  tests/chroma/hadron/propagator/unprec_hamberwu-v8.ini.xml,
	  tests/chroma/hadron/propagator/unprec_hamberwu-v8.out.xml: Added
	  unprec Hamber-Wu.

2005-12-02 23:20  edwards

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  fermacts/unprec_hamberwu_fermact_w.cc,
	  fermacts/unprec_hamberwu_fermact_w.h,
	  linop/unprec_hamberwu_linop_w.cc,
	  linop/unprec_hamberwu_linop_w.h: Added unprec Hamber-Wu

2005-11-29 23:51  tag chroma2-5-4

2005-11-29 23:51  edwards

	* NEWS: Info on 2.5.4

2005-11-29 23:48  edwards

	* tests/stoch_meson/: stoch_meson.ini.xml, stoch_meson.out.xml: New
	  input and output format.

2005-11-29 23:47  edwards

	* mainprogs/: main/collect_multi_propcomp.cc,
	  main/collect_propcomp.cc, main/multi_propagator_comp.cc,
	  main/propagator_comp.cc, main/qpropadd.cc, main/qpropgfix.cc,
	  main/qproptrev.cc, main/stoch_meson.cc, main/wallformfac.cc,
	  tests/t_mres_4d.cc, tests/t_seqsource.cc: Changed PropSource_t to
	  PropSourceConst_t and added a new PropSourceSmear_t.	Renamed
	  PropSink_t to PropSinkSmear_t .

2005-11-29 23:46  edwards

	* lib/: io/qprop_io.cc, io/qprop_io.h,
	  meas/inline/hadron/inline_bar3ptfn_w.cc,
	  meas/inline/hadron/inline_building_blocks_w.cc,
	  meas/inline/hadron/inline_make_source_ferm_w.h,
	  meas/inline/hadron/inline_make_source_w.h,
	  meas/inline/hadron/inline_mres_w.cc,
	  meas/inline/hadron/inline_multi_propagator_w.cc,
	  meas/inline/hadron/inline_multipole_w.cc,
	  meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  meas/inline/hadron/inline_propagator_w.cc,
	  meas/inline/hadron/inline_seqsource_w.cc,
	  meas/inline/hadron/inline_seqsource_w.h,
	  meas/inline/hadron/inline_sink_smear_w.cc,
	  meas/inline/hadron/inline_sink_smear_w.h,
	  meas/inline/hadron/inline_spectrumOct_w.cc,
	  meas/inline/hadron/inline_spectrum_w.cc: Changed PropSource_t to
	  PropSourceConst_t and added a new PropSourceSmear_t . The two
	  need to be made distinct.

2005-11-29 23:45  edwards

	* lib/meas/hadron/: barcomp_w.cc, barcomp_w.h: Changed const int to
	  int.

2005-11-29 23:44  tag chroma2-5-3

2005-11-29 23:44  edwards

	* NEWS: Info on 2.5.3

2005-11-27 22:52  edwards

	* tests/chroma/hadron/propagator/prec_dwf-v8.ini.xml: New input
	  file.

2005-11-25 22:10  edwards

	* lib/meas/sources/pt_source_smearing.h: Fixed doxygen comments.

2005-11-24 00:49  edwards

	* tests/stoch_meson/create_chroma_xml.csh: Moved around loop.

2005-11-23 22:56  edwards

	* mainprogs/main/make_seeds.cc: Simple program to produce seeds.

2005-11-23 22:56  edwards

	* mainprogs/main/stoch_meson.cc: Removed unnecessary G5.

2005-11-22 17:03  tag chroma2-5-2

2005-11-22 17:03  edwards

	* tests/stoch_meson/: stoch_meson.ini.xml, stoch_meson.out.xml:
	  Added smearing.

2005-11-22 17:03  edwards

	* tests/stoch_meson/create_chroma_xml.csh: Different seed.

2005-11-22 17:02  edwards

	* mainprogs/main/stoch_meson.cc: Save some on smearing.

2005-11-22 17:02  edwards

	* lib/Makefile.am: New inline_link_smear

2005-11-22 17:01  edwards

	* NEWS: Info on 2.5.2

2005-11-22 17:00  edwards

	* lib/meas/: inline/smear/inline_link_smear.cc,
	  inline/smear/inline_link_smear.h,
	  inline/smear/inline_smear_aggregate.cc, inline/smear/smear.h,
	  smear/link_smearing_factory.cc, smear/link_smearing_factory.h,
	  smear/quark_source_sink.h, sources/pt_source_const.cc,
	  sources/sh_source_const.cc: Added new inline_link_smear. This can
	  replace all the separate inline smearing routines. Made inline
	  link smear use factory. Push group name for link smearing to
	  routines that care.

2005-11-22 16:59  edwards

	* lib/meas/smear/hyp_smear3d.cc: Bug fix I believe. The link in
	  j_decay was not propagated through - it was zero!

2005-11-22 16:58  edwards

	* tests/chroma/smear/link_smear/: link_smear.ini.xml,
	  link_smear.out.xml: New link smearing input/output

2005-11-22 14:16  edwards

	* lib/meas/smear/link_smearing_factory.cc: Added measurement of
	  plaquettes after smearing.

2005-11-22 14:15  edwards

	* lib/meas/inline/smear/: inline_ape_smear.cc,
	  inline_stout_smear.cc: Changed name out Observables group after
	  smearing.

2005-11-22 14:14  edwards

	* tests/chroma/smear/: ape_smear/ape_smear_v2.out.xml,
	  hyp_smear/hyp_smear_v4.out.xml: Updated regression tests.

2005-11-22 14:13  edwards

	* tests/chroma/smear/stout_smear/: stout_smear_v2.ini.xml,
	  stout_smear_v2.out.xml: New input and output format.s

2005-11-22 13:55  edwards

	* lib/meas/smear/stout_link_smearing.cc: Dumb fix.

2005-11-22 13:42  edwards

	* lib/meas/smear/stout_link_smearing.cc: Bug fix. Forgot to
	  overwrite original field.

2005-11-21 16:07  edwards

	* lib/meas/: sinks/pt_sink_smearing.cc, sinks/sh_sink_smearing.cc,
	  sources/pt_source_smearing.cc, sources/sh_source_smearing.cc:
	  Fixed source smearing to be only LatticeFermion (all that is
	  needed for the moment). The sink smearing is both
	  LatticePropagator and LatticeFermion.

2005-11-21 16:07  edwards

	* lib/meas/: sinks/sinks.h, sources/sources.h: Added aggregates to
	  include file.

2005-11-21 16:06  edwards

	* mainprogs/main/stoch_meson.cc: Added source and sink smearing.

2005-11-21 13:33  edwards

	* lib/meas/sources/pt_source_smearing.cc: Changed POINT_SINK to
	  POINT_SOURCE

2005-11-20 21:12  edwards

	* tests/stoch_meson/: create_chroma_xml.csh, stoch_meson.ini.xml,
	  stoch_meson.out.xml: Added color and spin dilution.

2005-11-20 19:24  edwards

	* tests/stoch_meson/: create_chroma_xml.csh, stoch_meson.ini.xml,
	  stoch_meson.out.xml: More changes.

2005-11-20 19:24  edwards

	* mainprogs/main/stoch_meson.cc: Many more changes.

2005-11-20 13:47  tag chroma2-5-1

2005-11-20 13:47  edwards

	* NEWS: Info on 2.5.1.

2005-11-20 13:32  tag chroma2-5-0

2005-11-20 13:32  edwards

	* NEWS: Reverted to 2.5.0

2005-11-20 13:29  edwards

	* lib/meas/hadron/mesons_w.cc: Added parenthesis

2005-11-20 13:28  edwards

	* lib/meas/sources/: dilutez2_source_const.cc,
	  dilutez2_source_const.h, dilutez3_source_const.cc,
	  dilutez3_source_const.h, dilutezN_source_const.cc,
	  dilutezN_source_const.h, source_const_aggregate.cc, sources.h,
	  zN_src.cc, zN_src.h: Removed Z2 in favor of ZN sources.

2005-11-20 13:28  edwards

	* mainprogs/main/stoch_meson.cc: Fixed up.

2005-11-20 13:27  edwards

	* tests/chroma/hadron/: make_source/dilute.ini.xml,
	  propagator/prec_wilson-v7.ferm.ini.xml,
	  propagator/prec_wilson-v8.ferm.ini.xml: New source arrangement.

2005-11-20 13:24  edwards

	* aclocal.m4, configure: Induced changes.

2005-11-20 13:21  edwards

	* configure.ac: Changed to 2.5.0

2005-11-20 13:21  edwards

	* README: Changed to reflect new dependency on qdp 1.18.X

2005-11-20 13:20  edwards

	* lib/Makefile.am: Replaced dilutez2 with dilutezN source. Added
	  zN_src.{h,cc}

2005-11-20 13:20  edwards

	* mainprogs/main/Makefile.am: Added stoch_meson

2005-11-20 13:19  edwards

	* tests/stoch_meson/: create_chroma_xml.csh, stoch_meson.ini.xml,
	  stoch_meson.out.xml: Test of stochastic meson sources.

2005-11-20 13:17  edwards

	* NEWS: Info on 2.5.1.

2005-11-18 16:31  edwards

	* lib/meas/sources/sources.h: New sources.

2005-11-18 16:31  edwards

	* lib/meas/sources/: dilutez3_source_const.cc,
	  dilutez3_source_const.h: First version.

2005-11-18 16:15  edwards

	* mainprogs/main/stoch_meson.cc: First version.

2005-11-18 16:00  edwards

	* docs/notes/: meson_sequential_source.tex, sequential_source.tex:
	  New meson sequential source notes.

2005-11-18 15:59  edwards

	* docs/notes/sequential_source.tex: Meson sequential source notes.

2005-11-17 21:04  edwards

	* lib/meas/smear/stout_link_smearing.cc: Disabled reading of
	  version number.

2005-11-17 17:05  edwards

	* docs/notes/chroma_gamma_matrices.tex: Some sign conventions.

2005-11-16 22:01  tag chroma2-4-3

2005-11-16 22:01  edwards

	* NEWS: Moved to version 2.4.3

2005-11-16 22:01  edwards

	* NEWS: Info on 2.4.4

2005-11-16 17:41  edwards

	* tests/chroma/hadron/propagator/: unprec-ovlap-zolo4d-v8.ini.xml,
	  unprec-ovlap-zolo4d-v8.out.xml: Overlap.

2005-11-16 17:41  edwards

	* tests/chroma/hadron/propagator/prec_wilson-v7.ferm.ini.xml:
	  LatticeFermion input file.

2005-11-16 11:53  edwards

	* lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc: Aggh! Bug
	  fix. Some soul commented out the reading of "H". So, some default
	  value (possibly zero) was always used.

2005-11-15 21:34  edwards

	* lib/meas/: sinks/pt_sink_smearing.cc, sinks/pt_sink_smearing.h,
	  sinks/sh_sink_smearing.cc, sinks/sh_sink_smearing.h,
	  smear/ape_link_smearing.cc, smear/ape_link_smearing.h,
	  smear/gaus_quark_smearing.cc, smear/gaus_quark_smearing.h,
	  smear/hyp_link_smearing.cc, smear/hyp_link_smearing.h,
	  smear/stout_link_smearing.cc, smear/stout_link_smearing.h,
	  sources/dilutez2_source_const.cc,
	  sources/dilutez2_source_const.h, sources/pt_source_const.cc,
	  sources/pt_source_const.h, sources/pt_source_smearing.cc,
	  sources/pt_source_smearing.h, sources/rndz2wall_source_const.cc,
	  sources/rndz2wall_source_const.h, sources/sh_source_const.cc,
	  sources/sh_source_const.h, sources/sh_source_smearing.cc,
	  sources/sh_source_smearing.h, sources/wall_source_const.cc,
	  sources/wall_source_const.h: Simplify names by pushing structs
	  and classes within the Env namespace.

2005-11-15 21:29  edwards

	* lib/meas/inline/hadron/inline_make_source_ferm_w.cc: Added some
	  indentation.

2005-11-15 21:24  edwards

	* NEWS: Info on 2.4.3

2005-11-12 08:13  mcneile

	* install_scripts/LIVERPOOL/Makefile_link: This is an example
	  makefile for linking mainm programs to the installed version of
	  chroma.

2005-11-12 01:36  edwards

	* tests/chroma/hadron/make_source/dilute.ini.xml: Example of a
	  random complex z2 diluted source.

2005-11-12 01:31  edwards

	* lib/: meas/sources/dilutez2_source_const.cc,
	  meas/sources/dilutez2_source_const.h,
	  meas/sources/source_const_aggregate.cc, Makefile.am: Added random
	  complex z2 with dilution.

2005-11-10 13:38  dgr

	* PBS/spectrum/scripts/run_qqq.sh: Changed script to work with
	  newest version of chroma Modified to work on CMU cluster, however
	  it still needs tidying up

2005-11-09 23:55  edwards

	* lib/meas/sources/z2_src.cc: Did some indenting.

2005-11-09 23:54  edwards

	* lib/meas/sources/rndz2wall_source_const.cc: Added missing abort.

2005-11-09 11:13  dgr

	* aclocal.m4, lib/Makefile.am,
	  lib/meas/inline/hadron/inline_qqq_w.cc,
	  lib/util/gauge/conjgauge.cc, lib/util/gauge/conjgauge.h,
	  lib/util/gauge/constgauge.cc, lib/util/gauge/constgauge.h,
	  lib/util/gauge/gauge.h, mainprogs/main/cfgtransf.cc: Added
	  routines to generate a constant background gauge field; fixed bug
	  in Dirac basis conversion in qqq

2005-11-09 11:07  tag chroma2-4-2

2005-11-09 11:07  edwards

	* NEWS: Info on 2.4.2

2005-11-08 16:16  edwards

	* lib/meas/inline/hadron/: hadron.h, inline_hadron_aggregate.cc,
	  inline_make_source_ferm_w.cc, inline_make_source_ferm_w.h,
	  inline_propagator_ferm_w.cc, inline_propagator_ferm_w.h: Added
	  inline_make_source_ferm and inline_propagator_ferm

2005-11-08 16:15  edwards

	* lib/Makefile.am: Added inline_propagator_ferm and
	  inline_make_source_ferm

2005-11-08 14:05  tag chroma2-4-1

2005-11-08 14:05  edwards

	* NEWS: Info on 2.4.1.

2005-11-08 13:51  edwards

	* lib/meas/: sinks/pt_sink_smearing.h, sinks/sh_sink_smearing.cc,
	  sinks/sh_sink_smearing.h, sources/pt_source_smearing.cc,
	  sources/pt_source_smearing.h, sources/sh_source_smearing.cc,
	  sources/sh_source_smearing.h: Some more changes to get to compile
	  and link.

2005-11-08 13:41  edwards

	* lib/meas/: sinks/pt_sink_smearing.h, sinks/sh_sink_smearing.cc,
	  sinks/sh_sink_smearing.h, sources/pt_source_smearing.cc,
	  sources/pt_source_smearing.h, sources/sh_source_smearing.cc,
	  sources/sh_source_smearing.h: Moved create to quark_source_sink
	  base class as a virtual func. Still seem to need a redecl of
	  create() in derived classes.

2005-11-08 13:32  edwards

	* lib/meas/: sinks/pt_sink_smearing.cc, sinks/pt_sink_smearing.h,
	  smear/quark_source_sink.h: Moved create() to base class and gave
	  a default functionality.

2005-11-08 01:42  edwards

	* mainprogs/main/qpropqio.cc: Fixed for new input format.

2005-11-08 01:30  edwards

	* mainprogs/main/collect_propcomp.cc: Moved nrow to outer
	  structure.

2005-11-08 00:44  tag chroma2-4-0

2005-11-08 00:44  edwards

	* NEWS: Info on 2.4.0

2005-11-08 00:40  edwards

	* mainprogs/main/: collect_multi_propcomp.cc, collect_propcomp.cc,
	  qpropgfix.cc, qproptrev.cc, wallformfac.cc: Update to use new
	  source mechanism.

2005-11-08 00:40  edwards

	* tests/chroma/: eig/eigbnds-v1.out.xml,
	  hadron/bar3ptfn/bar3ptfn-v6.ini.xml,
	  hadron/bar3ptfn/bar3ptfn-v6.out.xml,
	  hadron/building_blocks/bb-v2.dat.xml,
	  hadron/building_blocks/bb-v2.ini.xml,
	  hadron/building_blocks/bb-v2.out.xml,
	  hadron/make_source/make_source-sh-v5.ini.xml,
	  hadron/make_source/make_source-sh-v5.out.xml,
	  hadron/make_source/make_source-v6.ini.xml,
	  hadron/make_source/make_source-v6.out.xml,
	  hadron/mres/mres-v1.ini.xml, hadron/mres/mres-v1.out.xml,
	  hadron/noisy_building_blocks/nbb-v1.ini.xml,
	  hadron/noisy_building_blocks/nbb-v1.out.xml,
	  hadron/propagator/prec_wilson-twisted-v7.ini.xml,
	  hadron/propagator/prec_wilson-twisted-v7.out.xml,
	  hadron/propagator/prec_wilson-v7.ini.xml,
	  hadron/propagator/prec_wilson-v7.out.xml,
	  hadron/qqbar/qqbar-v4.ini.xml, hadron/qqbar/qqbar-v4.out.xml,
	  hadron/qqq/qqq-v4.ini.xml, hadron/qqq/qqq-v4.out.xml,
	  hadron/seqsource/seqsource-v2.ini.xml,
	  hadron/seqsource/seqsource-v2.out.xml,
	  hadron/sink_smear/sink_smearing-v4.ini.xml,
	  hadron/sink_smear/sink_smearing-v4.out.xml,
	  hadron/sink_smear/sink_smearing-v5.ini.xml,
	  hadron/sink_smear/sink_smearing-v5.out.xml,
	  hadron/spectrum/spectrum-v12.ini.xml,
	  hadron/spectrum/spectrum-v12.out.xml,
	  hadron/spectrum/spectrum.dat.xml,
	  smear/ape_smear/ape_smear_v2.out.xml,
	  smear/hyp_smear/hyp_smear_v4.out.xml,
	  smear/stout_smear/stout_smear_v2.out.xml: Updated regression
	  tests to use new source constructions.

2005-11-08 00:39  edwards

	* lib/: io/qprop_io.cc, io/qprop_io.h,
	  meas/hadron/walldeltaff_w.cc, meas/hadron/walldeltaff_w.h,
	  meas/hadron/walldeltapff_w.cc, meas/hadron/walldeltapff_w.h,
	  meas/hadron/wallff_w.cc, meas/hadron/wallff_w.h,
	  meas/hadron/wallnuclff_w.cc, meas/hadron/wallnuclff_w.h,
	  meas/hadron/wallpionff_w.cc, meas/hadron/wallpionff_w.h,
	  meas/hadron/wallrhoff_w.cc, meas/hadron/wallrhoff_w.h,
	  meas/hadron/wallrhopiff_w.cc, meas/hadron/wallrhopiff_w.h,
	  meas/inline/hadron/inline_bar3ptfn_w.cc,
	  meas/inline/hadron/inline_hadspec_w.cc,
	  meas/inline/hadron/inline_make_source_w.cc,
	  meas/inline/hadron/inline_make_source_w.h,
	  meas/inline/hadron/inline_mres_w.cc,
	  meas/inline/hadron/inline_multi_propagator_w.cc,
	  meas/inline/hadron/inline_multipole_w.cc,
	  meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  meas/inline/hadron/inline_propagator_w.cc,
	  meas/inline/hadron/inline_qqbar_w.cc,
	  meas/inline/hadron/inline_qqq_w.cc,
	  meas/inline/hadron/inline_seqsource_w.cc,
	  meas/inline/hadron/inline_sink_smear_w.cc,
	  meas/inline/hadron/inline_spectrumOct_w.cc,
	  meas/inline/hadron/inline_spectrum_w.cc: Moved to new source
	  mechanism. Now have factories for sources, sinks, quark
	  smearings, and link smearings.

2005-11-08 00:37  edwards

	* aclocal.m4, configure: Induced changes.

2005-11-08 00:36  edwards

	* configure.ac: Changed to 2.4

2005-11-08 00:35  tag chroma2-3-6

2005-11-08 00:35  edwards

	* NEWS: Info on 2.3.6

2005-11-08 00:33  edwards

	* lib/meas/smear/: hyp_link_smearing.cc, stout_link_smearing.cc:
	  Added writing of LinkSmearingType name

2005-11-08 00:30  edwards

	* lib/meas/smear/: ape_link_smearing.cc, gaus_quark_smearing.cc:
	  Added writing of group name

2005-11-08 00:29  edwards

	* lib/meas/sinks/: pt_sink_smearing.cc, pt_sink_smearing.h,
	  sh_sink_smearing.cc, sh_sink_smearing.h: Added default
	  initialization. Added optional reading of disp_length and dir.
	  Added version numbers.

2005-11-08 00:29  edwards

	* lib/meas/sources/: pt_source_const.cc, pt_source_const.h,
	  pt_source_smearing.cc, pt_source_smearing.h,
	  rndz2wall_source_const.cc, rndz2wall_source_const.h,
	  sh_source_const.cc, sh_source_const.h, sh_source_smearing.cc,
	  sh_source_smearing.h, source_const_aggregate.cc,
	  wall_source_const.cc, wall_source_const.h: Added version numbers.
	  Added optional reading of disp_length and dir.  Added default
	  initialization. Added z2 wall and wall sources.

2005-11-08 00:27  edwards

	* lib/Makefile.am: Added new sources.

2005-11-07 17:46  edwards

	* lib/meas/: sinks/pt_sink_smearing.cc, sinks/pt_sink_smearing.h,
	  sinks/sh_sink_smearing.cc, sinks/sh_sink_smearing.h,
	  sinks/sink_smearing_aggregate.cc,
	  sinks/sink_smearing_aggregate.h, sources/pt_source_const.cc,
	  sources/pt_source_const.h, sources/pt_source_smearing.cc,
	  sources/pt_source_smearing.h, sources/sh_source_const.cc,
	  sources/sh_source_const.h, sources/sh_source_smearing.cc,
	  sources/sh_source_smearing.h, sources/source_const_aggregate.cc,
	  sources/source_const_aggregate.h,
	  sources/source_smearing_aggregate.cc,
	  sources/source_smearing_aggregate.h,
	  smear/gaus_quark_smearing.cc, smear/gaus_quark_smearing.h,
	  smear/quark_smearing_aggregate.cc,
	  smear/quark_smearing_aggregate.h: Rearranged aggregation.

2005-11-07 16:30  edwards

	* lib/Makefile.am: Added back in noisy building blocks.

2005-11-07 16:26  edwards

	* lib/actions/boson/operator/: klein_gord.cc, klein_gord.h: Added
	  lattice fermion version.

2005-11-07 16:23  edwards

	* lib/meas/smear/gaus_quark_smearing.cc: Switch to old gausSmear
	  conventions

2005-11-07 16:23  edwards

	* lib/meas/smear/: gaus_smear.cc, gaus_smear.h: Added lattice
	  fermion version

2005-11-07 16:20  edwards

	* lib/meas/meas.h: Added sinks.h

2005-11-07 16:18  edwards

	* lib/meas/smear/jacobi_smear.cc: Switched args

2005-11-07 16:17  edwards

	* lib/Makefile.am: Lots of new smearing files.

2005-11-07 13:06  edwards

	* lib/meas/smear/link_smearing_aggregate.cc: More smearings.

2005-11-07 13:05  edwards

	* lib/meas/smear/: hyp_link_smearing.cc, hyp_link_smearing.h,
	  stout_link_smearing.cc, stout_link_smearing.h: New smearings.

2005-11-07 13:05  edwards

	* lib/meas/smear/wupp_smear.cc: Reordered arg.

2005-11-07 12:30  edwards

	* lib/meas/inline/smear/inline_hyp_smear.cc: Added missing
	  pop(xml).

2005-11-07 01:40  edwards

	* lib/meas/smear/: ape_link_smearing.cc, ape_link_smearing.h,
	  gaus_quark_smearing.cc, gaus_quark_smearing.h, link_smearing.h,
	  link_smearing_aggregate.cc, link_smearing_aggregate.h,
	  link_smearing_factory.cc, link_smearing_factory.h,
	  quark_smearing.h, quark_smearing_aggregate.cc,
	  quark_smearing_aggregate.h, quark_smearing_factory.h,
	  quark_source_sink.h, smear.h: More updates and smearings.

2005-11-07 01:30  edwards

	* lib/meas/sources/: prop_source_factory_w.h, pt_source_const.cc,
	  pt_source_const.h, pt_source_smearing.cc, pt_source_smearing.h,
	  pt_sourceconst_w.cc, pt_sourceconst_w.h, sh_source_const.cc,
	  sh_source_const.h, sh_source_smearing.cc, sh_source_smearing.h,
	  sh_sourceconst_w.cc, sh_sourceconst_w.h,
	  source_const_aggregate.cc, source_const_aggregate.h,
	  source_const_factory.h, source_smearing_aggregate.cc,
	  source_smearing_aggregate.h, source_smearing_factory.h,
	  sourceconst_aggregate_w.cc, sourceconst_aggregate_w.h, sources.h,
	  sources_s.h, sources_w.h: Rearranged smearing and source
	  construction.

2005-11-07 01:29  edwards

	* lib/meas/sources/: ptsrc_params.cc, ptsrc_params.h,
	  shsrc_params.cc, shsrc_params.h: Removed.

2005-11-07 01:28  edwards

	* lib/meas/sources/source_construction.h: Changed name

2005-11-07 01:28  edwards

	* lib/meas/sources/maksrc2_w.cc: Added comment.

2005-11-07 01:26  edwards

	* lib/meas/sources/: srcsnktype.h, wavetype.h, srcfil.h, d_src_w.h,
	  p_src_w.h: Added doxygen comments.

2005-11-07 01:26  edwards

	* lib/meas/sources/z2_src.h: Indenting and doxygen comments.

2005-11-07 01:24  edwards

	* lib/meas/sinks/: pt_sink_smearing.cc, pt_sink_smearing.h,
	  sh_sink_smearing.cc, sh_sink_smearing.h,
	  sink_smearing_aggregate.cc, sink_smearing_aggregate.h,
	  sink_smearing_factory.h, sinks.h: New sink smearing.

2005-11-04 23:10  tag chroma2-3-5

2005-11-04 23:10  edwards

	* NEWS: Info on 2.3.5

2005-11-02 22:52  edwards

	* mainprogs/main/hmc.cc: Added "hmc" to error print statements.

2005-11-02 15:42  edwards

	* lib/actions/ferm/linop/prec_parwilson_linop_w.cc: Fixed nFlops()

2005-11-02 10:55  tag chroma2-3-4

2005-11-02 10:55  edwards

	* NEWS: Info on 2.3.4

2005-11-02 10:53  edwards

	* mainprogs/main/Makefile.am: Removed propagator_hack_SOURCES.

2005-11-02 10:52  edwards

	* mainprogs/main/propagator_hack.cc: Removed propagator_hack

2005-11-02 10:51  edwards

	* mainprogs/main/Makefile.am: Removed propagator_hack.

2005-11-01 17:00  edwards

	* lib/meas/inline/io/: inline_io_aggregate.cc,
	  inline_szin_read_obj.cc, inline_szin_read_obj.h,
	  szin_read_obj_funcmap.cc, szin_read_obj_funcmap.h: Added szin
	  reading.

2005-11-01 16:59  edwards

	* lib/Makefile.am: Added szin_read_funcmap, and inline_szin_read

2005-11-01 16:59  edwards

	* tests/chroma/io/szin_read_obj/: szin_read_obj.ini.xml,
	  szin_read_obj.out.xml: Test files.

2005-11-01 16:57  edwards

	* lib/io/readszin.cc: Added resize of "u".

2005-11-01 15:31  edwards

	* tests/chroma/io/szin_write_obj/: szin_write_obj.ini.xml,
	  szin_write_obj.out.xml: Added propagator writing.

2005-11-01 09:22  tag chroma2-3-3

2005-11-01 09:22  edwards

	* lib/meas/sources/srcfil.cc: Added missing "const" in staggered
	  srcfil.

2005-10-31 23:49  edwards

	* NEWS: Info on 2.3.3 .

2005-10-31 23:24  edwards

	* lib/meas/: hadron/hadron_w.h, sources/sources_w.h: Moved walfil_w
	  from hadron_w.h to sources_w.h

2005-10-31 23:22  edwards

	* lib/meas/: hadron/hadron.h, sources/sources.h: Moved z2_src and
	  srcfil from hadron.h to sources.h

2005-10-31 23:19  edwards

	* lib/Makefile.am: Moved around z2_src, srcfil and walfil to
	  sources directory.

2005-10-31 23:17  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Some timings for the moment.

2005-10-31 23:15  edwards

	* lib/meas/hadron/ks_local_loops.cc: Moved around z2_src

2005-10-31 23:13  edwards

	* lib/meas/inline/hadron_s/: util_compute_meson_s.cc,
	  util_compute_singlet_ps.cc: Moved around srcfil

2005-10-31 23:11  edwards

	* lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc: Moved
	  around srcfil.h

2005-10-31 23:10  edwards

	* lib/meas/hadron/hadron_s.h: Removed walfil_s.h

2005-10-31 23:10  edwards

	* lib/meas/inline/hadron/inline_make_source_w.cc: Moved around
	  srcfil and walfil

2005-10-31 23:09  edwards

	* lib/meas/sources/sources.h: Added sources_s.h

2005-10-31 23:08  edwards

	* lib/meas/sources/sources_s.h: Added walfil_s.h

2005-10-31 23:05  edwards

	* lib/meas/hadron/: srcfil.cc, srcfil.h, srcfil_s.cc, walfil_s.cc,
	  walfil_s.h, walfil_w.cc, walfil_w.h, z2_src.cc, z2_src.h: Moved
	  to sources directory.

2005-10-31 23:01  edwards

	* lib/meas/hadron/mesonseqsrc_w.cc: Typo - fixed names of
	  mesPion1B1X1SeqSrc and Y1.

2005-10-31 22:22  edwards

	* lib/actions/ferm/invert/invcg2.cc: Added flopcounts

2005-10-31 16:47  edwards

	* lib/meas/hadron/mesonseqsrc_w.cc: Removed harmless(?) duplicate
	  registeration.

2005-10-31 16:43  edwards

	* lib/meas/hadron/mesonseqsrc_w.cc: Bug fix in PION-B1_Y and
	  PION_B1_X .

2005-10-31 16:41  dgr

	* PBS/spectrum/scripts/: create_pbs.pl, run_qqq.sh: Added
	  run_qqq.sh which works with new version of chroma

2005-10-31 16:33  dgr

	* PBS/spectrum/bin/parse_baryons.pl: Now supports the concatenation
	  of several qqq_prop files into a single file

2005-10-30 23:35  edwards

	* lib/actions/ferm/linop/: prec_parwilson_linop_w.cc,
	  prec_parwilson_linop_w.h: Optimized some a new operator().

2005-10-30 22:48  edwards

	* lib/actions/ferm/linop/: lwldslash_base_array_w.cc,
	  lwldslash_base_array_w.h, lwldslash_base_w.cc,
	  lwldslash_base_w.h, prec_parwilson_linop_w.cc,
	  prec_parwilson_linop_w.h: Added nFlops().

2005-10-30 14:37  edwards

	* lib/actions/ferm/linop/prec_wilson_linop_w.cc: Fixed flop counts

2005-10-30 13:37  edwards

	* lib/actions/ferm/linop/: lmdagm.h, prec_dwf_linop_array_w.h,
	  prec_ht_contfrac5d_linop_array_w.h, prec_ovext_linop_array_w.h,
	  prec_ovlap_contfrac5d_linop_base_array_w.h,
	  prec_ovlap_contfrac5d_pv_linop_array_w.h, prec_wilson_linop_w.cc,
	  prec_wilson_linop_w.h: Removed "const" from "const unsigned long"
	  in func decls since the "const" here is meaningless.

2005-10-30 13:37  edwards

	* lib/linearop.h: Removed "const" from "const unsigned long" since
	  the const here is meaningless.

2005-10-28 17:31  edwards

	* lib/meas/smear/: ape_link_smearing.cc, ape_link_smearing.h,
	  link_smearing.h, link_smearing_aggregate.cc,
	  link_smearing_aggregate.h, link_smearing_factory.h: New link
	  smearing

2005-10-28 17:11  tag chroma2-3-2

2005-10-28 17:11  edwards

	* NEWS: Info on 2.3.2

2005-10-28 17:06  edwards

	* lib/meas/sources/: maksrc2_w.cc, prop_source_factory_w.h,
	  pt_sourceconst_w.cc, pt_sourceconst_w.h, ptsrc_params.cc,
	  ptsrc_params.h, sh_sourceconst_w.cc, sh_sourceconst_w.h,
	  shsrc_params.cc, shsrc_params.h, source_construction.h,
	  sourceconst_aggregate_w.cc, sourceconst_aggregate_w.h, srcfil.cc,
	  srcfil.h, walfil_s.cc, walfil_s.h, walfil_w.cc, walfil_w.h,
	  z2_src.cc, z2_src.h: Moving from lib/meas/hadrons to
	  lib/meas/sources. Start of new source construction.

2005-10-27 23:37  edwards

	* tests/:
	  make_source/make_source_point_src_v5.linux-scalar-intel.xml,
	  make_source/make_source_point_src_v5.xml.ini,
	  make_source/make_source_v2.linux-scalar-intel.xml,
	  make_source/make_source_v2.xml.ini,
	  make_source/make_source_v3.linux-scalar-intel.xml,
	  make_source/make_source_v3.xml.ini,
	  make_source/make_source_v4.linux-scalar-intel.xml,
	  make_source/make_source_v4.xml.ini,
	  make_source/make_source_v5.linux-scalar-intel.xml,
	  make_source/make_source_v5.xml.ini,
	  make_source/make_source_wall_v5.linux-scalar-intel.xml,
	  make_source/make_source_wall_v5.xml.ini,
	  seqprop_comp/seqprop_collect_nonrel_v3.linux-scalar-intel.xml,
	  seqprop_comp/seqprop_comp_nonrel_v3.xml.ini,
	  seqprop_comp/seqprop_comp_v3.xml.ini: Functionality moved to
	  chroma/tests/chroma

2005-10-27 23:35  edwards

	* tests/: ExampleBuildingBlocks/examplebb_v1.linux-scalar.xml,
	  ExampleBuildingBlocks/examplebb_v1.xml.ini,
	  qpropqio/qpropqio_v1.xml.ini,
	  seqprop/seqprop_nonrel_v3.linux-scalar-intel.xml,
	  seqprop/seqprop_nonrel_v3.xml.ini,
	  seqprop/seqprop_v1.linux-scalar-intel.xml,
	  seqprop/seqprop_v1.xml.ini,
	  seqprop/seqprop_v2.linux-scalar-intel.xml,
	  seqprop/seqprop_v2.xml.ini,
	  seqprop/seqprop_v3.linux-scalar-intel.xml,
	  seqprop/seqprop_v3.xml.ini,
	  seqsource/prop_seqsource_v6.linux-scalar-intel.xml,
	  seqsource/prop_seqsource_v6.xml.ini,
	  seqsource/seqsource_v1.linux-scalar-intel.xml,
	  seqsource/seqsource_v1.xml.ini, seqsource/t_seqsource.xml.ini,
	  seqsource/test_prop_seqsource_comp_nr_v1.csh,
	  seqsource/test_prop_seqsource_comp_v1.csh,
	  seqsource/test_prop_seqsource_nr_v1.csh,
	  seqsource/test_prop_seqsource_v1.csh,
	  sink_smearing/chroma_sink_smear_v4.linux-scalar-intel.xml,
	  sink_smearing/chroma_sink_smear_v4.xml.ini,
	  sink_smearing/sink_smearing_v4.linux-scalar-intel.xml,
	  sink_smearing/sink_smearing_v4.xml.ini,
	  spectrum_w/spectrum_w_v10.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v10.xml.ini,
	  spectrum_w/spectrum_w_v11.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v11.xml.ini, spectrum_w/spectrum_w_v5.ini,
	  spectrum_w/spectrum_w_v6.ini,
	  spectrum_w/spectrum_w_v6.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v6.linux-scalar.nml.bz2,
	  spectrum_w/spectrum_w_v6.xml.ini,
	  spectrum_w/spectrum_w_v7.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v7.xml.ini,
	  spectrum_w/spectrum_w_v8.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v8.xml.ini,
	  spectrum_w/spectrum_w_v9.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v9.xml.ini,
	  spectrum_w/spectrum_wall_v10.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_wall_v10.xml.ini: Functionality moved to
	  chroma/test/chroma directory.

2005-10-27 23:31  edwards

	* tests/: bar3ptfn/bar3ptfn_nonrel_v7.linux-scalar-intel.dat,
	  bar3ptfn/bar3ptfn_nonrel_v7.linux-scalar-intel.xml,
	  bar3ptfn/bar3ptfn_nonrel_v7.xml.ini, bar3ptfn/bar3ptfn_v3.ini,
	  bar3ptfn/bar3ptfn_v4.ini,
	  bar3ptfn/bar3ptfn_v4.linux-scalar-intel.xml.gz,
	  bar3ptfn/bar3ptfn_v4.linux-scalar.nml.bz2,
	  bar3ptfn/bar3ptfn_v4.xml.ini,
	  bar3ptfn/bar3ptfn_v5.linux-scalar-intel.dat,
	  bar3ptfn/bar3ptfn_v5.linux-scalar-intel.xml,
	  bar3ptfn/bar3ptfn_v5.xml.ini,
	  bar3ptfn/bar3ptfn_v6.linux-scalar-intel.dat,
	  bar3ptfn/bar3ptfn_v6.linux-scalar-intel.xml,
	  bar3ptfn/bar3ptfn_v6.xml.ini, bar3ptfn/test_bar3ptfn_v6.csh,
	  hypsmear/apesmear_v2.xml.ini, hypsmear/chroma_hypsmear4d.xml.ini,
	  hypsmear/example_hypsmear_input_v3.xml,
	  hypsmear/hypsmear_v1.linux-scalar-intel.xml,
	  hypsmear/hypsmear_v1.xml.ini,
	  hypsmear/hypsmear_v2.linux-scalar-intel.xml,
	  hypsmear/hypsmear_v2.xml.ini,
	  hypsmear/hypsmear_v3.linux-scalar-intel.xml,
	  hypsmear/hypsmear_v3.xml.ini: Moved to chroma/tests/chroma
	  directory.

2005-10-27 23:24  edwards

	* tests/qqq_w/: chroma_qqq_v4.xml.ini,
	  chroma_qqq_v4.xml.linux-scalar-intel.xml,
	  qqq_w_v4.linux-scalar-intel.qqq_pt,
	  qqq_w_v4.linux-scalar-intel.qqq_smeared,
	  qqq_w_v4.linux-scalar-intel.xml, qqq_w_v4.xml.ini: Functionality
	  moved to chroma/tests/chroma/hadron/qqq

2005-10-27 17:31  kostas

	* lib/: Makefile.am, meas/inline/hadron/hadron.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_qpropadd_w.cc,
	  meas/inline/hadron/inline_qpropadd_w.h: propagator addition

2005-10-24 21:51  tag chroma2-3-1

2005-10-24 21:51  edwards

	* NEWS: Info on 2.3.1

2005-10-24 21:24  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Commented out
	  multipropagator and hadspec.

2005-10-24 02:28  tag chroma2-3-0

2005-10-24 02:28  edwards

	* configure: Induced changes.

2005-10-24 02:26  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.cc: Added
	  registering of BC's

2005-10-24 02:25  edwards

	* lib/actions/ferm/fermacts/prec_wilson_fermact_w.h: Added doxygen
	  comments.

2005-10-24 02:24  edwards

	* aclocal.m4: Induced changes.

2005-10-24 02:24  edwards

	* NEWS: Info on 2.3.0

2005-10-24 02:23  edwards

	* configure.ac: Changed to 2.3 .

2005-10-24 02:00  tag chroma2-2-3

2005-10-24 02:00  edwards

	* NEWS: Info on 2.2.3

2005-10-24 01:53  edwards

	* lib/actions/ferm/fermbcs/: fermbcs_w.cc, simple_fermbc.h,
	  simple_fermbc_s.cc, simple_fermbc_s.h, simple_fermbc_w.cc,
	  simple_fermbc_w.h: Inserted doxygen comments. Removed APPLE
	  stuff. Forced SIMPLE fermbc stuff to use its own name.

2005-10-24 01:51  edwards

	* lib/actions/ferm/fermbcs/fermbcs_w.h: Inserted doxygen comments.
	  Changed include to "fermbc.h" instead of chromabase.

2005-10-24 01:50  edwards

	* lib/actions/ferm/fermbcs/: fermbc_factory_s.h,
	  fermbc_factory_w.h, twisted_fermbc_w.h, fermbcs_s.h: Inserted
	  doxygen comments.

2005-10-23 23:37  edwards

	* lib/io/enum_io/enum_qdpvolfmt_io.cc: Added PARTFILE.

2005-10-23 16:45  edwards

	* lib/meas/inline/hadron/hadron.h: Commented out multipole.

2005-10-21 15:32  kostas

	* lib/actions/ferm/fermbcs/simple_fermbc_w.cc: fixed the Apple bug

2005-10-21 11:55  flemingg

	* lib/Makefile.am, lib/meas/inline/hadron/hadron.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_noisy_building_blocks_w.h,
	  tests/chroma/hadron/noisy_building_blocks/nbb-v1.dat_0.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb-v1.dat_1.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb-v1.ini.xml,
	  tests/chroma/hadron/noisy_building_blocks/nbb-v1.out.xml: Added
	  new inline measurement "NOISY_BUILDING_BLOCKS" patterned after
	  the "BUILDING_BLOCKS" inline measurement.  They differ in that
	  NoisyBuildingBlocks uses the noisy source of a noisy forward
	  propagator in lieu of the sequential propagator to estimate the
	  trace of a twist two operator.  Some effort could be made to make
	  the routine more bulletproof, e.g. check that the source of the
	  propagator is the source that was passed, etc.
	  'tests/chroma/hadron/noisy_building_blocks' directory has an
	  example XML input file of how the measurement can be used.

2005-10-19 15:34  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Added lots of timings.

2005-10-19 11:36  edwards

	* lib/meas/hadron/hadron_w.h: Commented out multipole_w.h

2005-10-19 00:58  edwards

	* lib/meas/inline/hadron/: inline_bar3ptfn_w.cc,
	  inline_make_source_w.cc, inline_propagator_w.cc,
	  inline_seqsource_w.cc, inline_spectrumOct_w.cc,
	  inline_spectrum_w.cc: Added total time computations.

2005-10-18 22:26  edwards

	* lib/meas/inline/hadron/inline_building_blocks_w.cc: Small bug fix
	  in use of timer.

2005-10-18 21:16  edwards

	* lib/Makefile.am: Commented out multipole code.

2005-10-18 21:15  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Commented out
	  multipole

2005-10-18 21:05  edwards

	* lib/meas/inline/: hadron/inline_hadron_aggregate.cc,
	  eig/inline_eig_aggregate.cc, glue/inline_glue_aggregate.cc,
	  io/inline_io_aggregate.cc, smear/inline_smear_aggregate.cc:
	  Removed dosisms.

2005-10-18 16:10  edwards

	* lib/meas/inline/hadron/inline_building_blocks_w.cc: Added total
	  timer.

2005-10-18 15:47  tag chroma2-2-2

2005-10-18 15:47  edwards

	* install_scripts/cygwin/config_chroma_scalar.sh: Added CFLAGS

2005-10-18 15:46  edwards

	* NEWS: Info on 2.2.2

2005-10-18 14:36  dgr

	* PBS/spectrum/bin/parse_baryons.pl: Corrected various errors in
	  parse_baryons.pl

2005-10-17 10:48  dgr

	* PBS/spectrum/bin/parse_baryons.pl: Added perl scipt that
	  generates ini file for full generalized spectrum run

2005-10-16 09:35  flemingg

	* lib/meas/inline/hadron/inline_make_source_w.cc: For noise
	  sources, state of RNG is preserved in XML output and in source
	  header.

2005-10-15 05:35  mcneile

	* scripts/: README_buildtest.sh, build.sh: Script and README
	  written by: zbigniew sroczynski

2005-10-14 21:35  edwards

	* lib/actions/ferm/fermacts/fermacts_aggregate_w.h: Changed doxygen
	  comment.

2005-10-13 18:07  bjoo

	* lib/actions/ferm/fermacts/stout_state.cc: BUGFIX in
	  stout_State.cc

2005-10-13 14:52  bjoo

	* tests/hmc/: hmc.prec_stout_dwf.xml.ini,
	  hmc.prec_stout_wilson.xml.ini, hmc.unprec_stout_wilson.xml.ini:
	  Added explicit orthog dir param to some stout smeared HMC input
	  files

2005-10-13 14:38  bjoo

	* lib/actions/ferm/fermacts/prec_stout_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_stout_fermact_w.h,
	  lib/actions/ferm/fermacts/stout_fermact_params.cc,
	  lib/actions/ferm/fermacts/stout_fermact_params.h,
	  lib/actions/ferm/fermacts/stout_state.cc,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_w.h,
	  mainprogs/tests/t_stout_state.cc,
	  tests/hmc/hmc.prec_stout_wilson.xml.ini,
	  tests/t_stout_state/t_stout_state.xml.ini: The Stout Smear Test
	  code seems to work

2005-10-12 23:18  tag chroma2-2-1

2005-10-12 23:18  edwards

	* NEWS: Info on 2.2.1

2005-10-12 23:10  edwards

	* lib/util/gauge/gauge_startup.cc: Added generation of file,record
	  xml in cases where they are not read from a file.

2005-10-12 23:09  edwards

	* lib/io/gauge_io.cc: Added checks of file status.

2005-10-12 11:39  dgr

	* PBS/spectrum/lib/Parse_groups.pm: Fixed possible problem with
	  flavour identification: needs careful checking

2005-10-06 23:18  tag LIVTAG_2

2005-10-06 23:18  tag chroma2-2-0

2005-10-06 23:18  edwards

	* aclocal.m4, configure: Induced changes.

2005-10-06 23:17  edwards

	* configure.ac: Changed to 2.2

2005-10-06 14:09  flemingg

	* lib/actions/ferm/qprop/prec_fermact_qprop_array.cc: Fixed a
	  malfeature exposed by GCC 4.0.

2005-10-05 09:27  edwards

	* NEWS: Info on 2.2.0

2005-10-04 15:23  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/prec_stout_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_stout_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_stout_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_stout_fermact_w.h,
	  lib/actions/ferm/fermacts/stout_fermact_params.cc,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_w.h,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  mainprogs/main/hmc.cc, mainprogs/tests/t_stout_state.cc,
	  tests/hmc/hmc.prec_1flav_stout_dwf.xml.ini,
	  tests/hmc/hmc.prec_1flav_wilson.xml.ini,
	  tests/hmc/hmc.prec_stout_dwf.xml.ini,
	  tests/hmc/hmc.prec_stout_wilson.xml.ini,
	  tests/hmc/hmc.unprec_stout_dwf.xml.ini: Added stout for prec4d
	  and unprec 4d and 5d plus also HMC input files

2005-10-02 23:34  edwards

	* TODO: Updated TODO list.

2005-10-02 15:36  bjoo

	* tests/hmc/hmc.unprec_stout_wilson.xml.ini: Test file for
	  stout_wilson

2005-10-02 15:33  bjoo

	* lib/: actions/ferm/fermacts/stout_fermact_params.cc,
	  actions/ferm/fermacts/unprec_stout_fermact_w.cc,
	  actions/ferm/fermacts/unprec_stout_fermact_w.h,
	  update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc: Hacked
	  around XPath expressions so that the Stout smeared ferm act now
	  works in HMC. But still need to check correctness and possibly
	  improve the interface for deciding which directions one smears
	  in. However plumbingwise it is all done

2005-10-01 23:08  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/stout_fermact_params.cc,
	  lib/actions/ferm/fermacts/stout_fermact_params.h,
	  lib/actions/ferm/fermacts/stout_state.cc,
	  lib/actions/ferm/fermacts/stout_state.h,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_stout_fermact_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  mainprogs/tests/t_stout_state.cc: More stout files. Compile but
	  dont work yet

2005-10-01 13:01  edwards

	* lib/meas/inline/hadron/inline_seqsource_w.cc: Changed comment.

2005-09-29 15:06  edwards

	* NEWS: Info on 2.1.0

2005-09-29 11:58  edwards

	* tests/chroma/hadron/building_blocks/: bb-v2.dat.xml,
	  bb-v2.ini.xml, bb-v2.out.xml: Updated tests for new input/output.

2005-09-29 11:57  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Turned off debugging

2005-09-29 11:53  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Updates to interface.

2005-09-29 11:53  edwards

	* lib/meas/: hadron/BuildingBlocks_w.cc, hadron/BuildingBlocks_w.h,
	  inline/hadron/inline_building_blocks_w.cc,
	  inline/hadron/inline_building_blocks_w.h: Changed to support
	  version 3 writing.

2005-09-27 23:24  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/stout_state.cc,
	  lib/actions/ferm/fermacts/stout_state.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_stout_state.cc:
	  Stout State now stoutens links correctly. but still need the
	  force term. I added t_stout_state in mainprogs/tests to test
	  against the existing stoutening routines

2005-09-27 17:16  bjoo

	* lib/state.h, lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/stout_state.cc,
	  lib/actions/ferm/fermacts/stout_state.h,
	  lib/actions/ferm/linop/lwldslash_base_array_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_w.cc,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.cc,
	  lib/meas/smear/stout_smear.cc,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/util/gauge/eesu3.cc,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4: Tidyed up eesu3,
	  added plumbing for state based derivatives wrt thin links. Added
	  skeleton stout_state files but not yet added these latter to
	  Makefile.am

2005-09-26 21:33  tag chroma2-0-4

2005-09-26 21:33  edwards

	* lib/meas/inline/hadron/inline_building_blocks_w.cc: Added
	  printing of flavor.

2005-09-26 21:26  edwards

	* lib/named_obj.h: Removed flush from dump.

2005-09-26 21:19  edwards

	* NEWS: Info on 2.0.4

2005-09-26 21:12  edwards

	* tests/chroma/hadron/spectrum/: spectrum-v12.out.xml,
	  spectrum.dat.xml: Updated again.

2005-09-26 21:11  edwards

	* lib/meas/inline/hadron/: inline_building_blocks_w.cc,
	  inline_building_blocks_w.h: Added required flavor label.

2005-09-26 21:11  edwards

	* lib/meas/inline/hadron/inline_spectrum_w.cc: Added timing.

2005-09-26 21:09  edwards

	* tests/chroma/hadron/building_blocks/: bb-v2.dat.xml,
	  bb-v2.out.xml: Updated again.

2005-09-26 21:05  edwards

	* tests/chroma/hadron/building_blocks/: bb-v2.dat.xml,
	  bb-v2.ini.xml, bb-v2.out.xml: Updated to use Flavor labels

2005-09-26 15:49  tag chroma2-0-3

2005-09-26 15:49  edwards

	* lib/named_obj.h: Changed dump to write to cout instead of cerr.

2005-09-26 15:37  edwards

	* NEWS: Info on 2.0.3

2005-09-26 15:37  edwards

	* lib/meas/inline/io/: inline_erase_obj.cc, inline_erase_obj.h,
	  inline_gaussian_obj.cc, inline_list_obj.cc, inline_list_obj.h:
	  Removed redundant NamedObject params. Fixed some comments.

2005-09-26 15:36  edwards

	* tests/chroma/io/qio_write_obj/: qio_write_obj.ini.xml,
	  qio_write_obj.out.xml: Some more tests.

2005-09-26 01:43  tag chroma2-0-2

2005-09-26 01:43  edwards

	* NEWS: Info on 2.0.2

2005-09-26 01:14  edwards

	* lib/meas/inline/io/: qio_read_obj_funcmap.cc,
	  qio_write_obj_funcmap.cc: Commented out change of precision code
	  in LatticeFermion. Something wobbly in QDP here.

2005-09-26 01:06  tag chroma2-0-1

2005-09-26 01:06  edwards

	* NEWS: Info on 2.0.1

2005-09-26 01:03  edwards

	* tests/chroma/: chroma_twisted_bc_test.xml.ini,
	  hadron/propagator/prec_wilson-twisted-v7.ini.xml,
	  hadron/propagator/prec_wilson-twisted-v7.out.xml: Moved twisted
	  to a subdir. Updated test.

2005-09-26 00:59  edwards

	* tests/chroma/: chroma_eigbnds.xml.ini,
	  chroma_make_source-bb.xml.ini, chroma_make_source-qqq.xml.ini,
	  eig/eigbnds-v1.ini.xml, eig/eigbnds-v1.out.xml: Removed old
	  files. New eigbnds.

2005-09-26 00:55  edwards

	* tests/chroma/hadron/bar3ptfn/: bar3ptfn-v6.ini.xml,
	  bar3ptfn-v6.out.xml: Bar3ptfn input/output.

2005-09-26 00:49  edwards

	* mainprogs/main/chroma.cc: Even tighter checks on XML validity.

2005-09-26 00:48  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h, hadseqsrc_w.cc,
	  hadseqsrc_w.h, mesonseqsrc_w.cc, mesonseqsrc_w.h,
	  seqsrc_funcmap_w.cc, seqsrc_funcmap_w.h: Changed forward props
	  convention. Generalized to allow an array of forward props. The
	  array size must match that expected in the seqsource.

2005-09-26 00:46  edwards

	* lib/meas/inline/hadron/: inline_seqsource_w.cc,
	  inline_seqsource_w.h: Changed forward prop conventions. Now
	  read/pass an array

2005-09-26 00:45  edwards

	* tests/chroma/hadron/: building_blocks/bb-v2.dat.xml,
	  building_blocks/bb-v2.ini.xml, building_blocks/bb-v2.out.xml,
	  seqsource/seqsource-v2.ini.xml, seqsource/seqsource-v2.out.xml:
	  Fixed to new SEQSOURCE prop_ids convention.

2005-09-25 23:26  edwards

	* tests/chroma/: hadron/building_blocks/bb-v2.ini.xml,
	  hadron/building_blocks/bb-v2.out.xml,
	  hadron/make_source/make_source-sh-v5.ini.xml,
	  hadron/make_source/make_source-sh-v5.out.xml,
	  hadron/mres/mres-v1.ini.xml, hadron/mres/mres-v1.out.xml,
	  hadron/propagator/prec_wilson-v7.ini.xml,
	  hadron/propagator/prec_wilson-v7.out.xml,
	  hadron/qqbar/qqbar-v4.ini.xml, hadron/qqbar/qqbar-v4.out.xml,
	  hadron/qqq/qqq-v4.ini.xml, hadron/qqq/qqq-v4.out.xml,
	  hadron/seqsource/seqsource-v2.ini.xml,
	  hadron/seqsource/seqsource-v2.out.xml,
	  hadron/sink_smear/sink_smearing-v4.ini.xml,
	  hadron/sink_smear/sink_smearing-v4.out.xml,
	  hadron/spectrum/spectrum-v12.ini.xml,
	  hadron/spectrum/spectrum-v12.out.xml,
	  hadron/spectrum/spectrum.dat.xml,
	  io/nersc_write_obj/nersc_write_obj.ini.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.ini.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.ini.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.ini.xml,
	  io/szin_write_obj/szin_write_obj.out.xml,
	  smear/ape_smear/ape_smear_v2.ini.xml,
	  smear/ape_smear/ape_smear_v2.out.xml,
	  smear/hyp_smear/hyp_smear_v4.ini.xml,
	  smear/hyp_smear/hyp_smear_v4.out.xml,
	  smear/stout_smear/stout_smear_v2.ini.xml,
	  smear/stout_smear/stout_smear_v2.out.xml: Updated files.

2005-09-25 23:21  edwards

	* lib/meas/inline/io/inline_snarf_obj.cc: Added setting of xml.

2005-09-25 23:11  edwards

	* mainprogs/main/chroma.cc: Improvement in measurement.

2005-09-25 17:33  tag chroma2-0-beta

2005-09-25 17:33  edwards

	* NEWS: Info on 2.0.beta

2005-09-25 17:04  edwards

	* AUTHORS, COPYING, INSTALL, INSTALL.ibm, Makefile.am, NEWS,
	  README, TODO, acinclude.m4, aclocal.m4, chroma-config.in,
	  configure, configure.ac, PBS/spectrum/README,
	  PBS/spectrum/bin/parse_qqq.pl, PBS/spectrum/bin/parse_qs.pl,
	  PBS/spectrum/lib/Parse_groups.pm,
	  PBS/spectrum/scripts/create_pbs.pl,
	  PBS/spectrum/scripts/create_pbs.pl-template,
	  PBS/spectrum/scripts/parse_qqq.pl,
	  PBS/spectrum/scripts/parse_qs.pl,
	  PBS/spectrum/scripts/run_complete_job.pl,
	  PBS/spectrum/scripts/run_complete_job.sh,
	  PBS/spectrum/scripts/run_qqq_spectrum.sh,
	  PBS/spectrum/scripts/smear_tune_submit.sh, config/config.guess,
	  config/config.sub, config/depcomp, config/install-sh,
	  config/missing, config/mkinstalldirs, docs/Makefile.am,
	  docs/chromadoc, docs/chromadoc.in, docs/faq.txt, docs/manual.tex,
	  docs/tutorial.html, docs/notes/N_N_5d_ov.tex,
	  docs/notes/anisoHQ.tex, docs/notes/baryon_3pt.tex,
	  docs/notes/chiral.tex, docs/notes/deltanotes.tex,
	  docs/notes/force.tex, docs/notes/gamma_conventions.tex,
	  docs/notes/hmc.tex, docs/notes/multicg.tex,
	  docs/notes/o3_to_u1.tex, docs/notes/overlap_5dim.tex,
	  docs/notes/overlap_proj_hmc.tex, docs/notes/partfrac5D.tex,
	  docs/notes/pinotes_v2.tex, docs/notes/rossi_basis_v2.tex,
	  docs/notes/trunc_ov_5d.tex,
	  install_scripts/LIVERPOOL/get_chroma.csh,
	  install_scripts/LIVERPOOL/install_chroma.sh,
	  install_scripts/NERSC/configure_chroma.sh,
	  install_scripts/QCDOC/CU_qcdochost0/README,
	  install_scripts/QCDOC/CU_qcdochost0/configure_chroma.sh,
	  install_scripts/QCDOC/CU_qcdochost0/configure_chroma_no_pab_dslash.sh,
	  install_scripts/cygwin/config_chroma_scalar.sh,
	  install_scripts/jlab/build.csh,
	  install_scripts/jlab/build2m-intel.csh,
	  install_scripts/jlab/build2m.csh,
	  install_scripts/jlab/build3g.csh,
	  install_scripts/jlab/build_some.csh,
	  install_scripts/jlab/config_chroma_parscalar-gigE-double.sh,
	  install_scripts/jlab/config_chroma_parscalar-gigE.sh,
	  install_scripts/jlab/config_chroma_parscalar-gm-double.sh,
	  install_scripts/jlab/config_chroma_parscalar-gm.sh,
	  install_scripts/jlab/config_chroma_parscalar-single.sh,
	  install_scripts/jlab/config_chroma_scalar.sh,
	  install_scripts/jlab/install_some.csh,
	  install_scripts/jlab/install_some_all.csh, lib/Makefile.am,
	  lib/chroma.h, lib/chroma_config.h,
	  lib/chroma_config_internal.h.in, lib/chromabase.h,
	  lib/chromainc.h, lib/common_declarations.h, lib/fermact.h,
	  lib/fermbc.h, lib/funcmap.h, lib/gaugeact.h, lib/gaugebc.h,
	  lib/handle.h, lib/invtype.h, lib/lib.h, lib/linearop.h,
	  lib/named_obj.h, lib/objfactory.h, lib/objfunctor.h,
	  lib/primitives.h, lib/singleton.h, lib/state.h, lib/syssolver.h,
	  lib/tpreclinop.h, lib/typeinfo.h, lib/typelist.h,
	  lib/typemanip.h, lib/typetraits.h, lib/actions/actions.h,
	  lib/actions/boson/boson.h,
	  lib/actions/boson/operator/klein_gord.cc,
	  lib/actions/boson/operator/klein_gord.h, lib/actions/ferm/ferm.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/bigfloat.h,
	  lib/actions/ferm/fermacts/fermact_factory_w.h,
	  lib/actions/ferm/fermacts/fermacts.h,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  lib/actions/ferm/fermacts/fermacts_aggregate_w.h,
	  lib/actions/ferm/fermacts/fermacts_s.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/overlap_state.cc,
	  lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.h,
	  lib/actions/ferm/fermacts/ovext_constant_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_constant_strategy.h,
	  lib/actions/ferm/fermacts/ovext_neuberger_strategy.cc,
	  lib/actions/ferm/fermacts/ovext_neuberger_strategy.h,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy.h,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.cc,
	  lib/actions/ferm/fermacts/ovext_tuning_strategy_aggregate.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/remez.h,
	  lib/actions/ferm/fermacts/remez_coeff.h,
	  lib/actions/ferm/fermacts/remez_gmp.cc,
	  lib/actions/ferm/fermacts/remez_gmp.h,
	  lib/actions/ferm/fermacts/remez_stub.h,
	  lib/actions/ferm/fermacts/stag_fermact_s.cc,
	  lib/actions/ferm/fermacts/stag_fermact_s.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/zolotarev.h,
	  lib/actions/ferm/fermacts/zolotarev_coeffs.cc,
	  lib/actions/ferm/fermbcs/fermbc_factory_s.h,
	  lib/actions/ferm/fermbcs/fermbc_factory_w.h,
	  lib/actions/ferm/fermbcs/fermbcs.h,
	  lib/actions/ferm/fermbcs/fermbcs_s.cc,
	  lib/actions/ferm/fermbcs/fermbcs_s.h,
	  lib/actions/ferm/fermbcs/fermbcs_w.cc,
	  lib/actions/ferm/fermbcs/fermbcs_w.h,
	  lib/actions/ferm/fermbcs/simple_fermbc.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_s.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc_s.h,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/simple_fermbc_w.h,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.cc,
	  lib/actions/ferm/fermbcs/twisted_fermbc_w.h,
	  lib/actions/ferm/invert/inv_borici_w.cc,
	  lib/actions/ferm/invert/inv_borici_w.h,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.cc,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.h,
	  lib/actions/ferm/invert/inv_minres_array.cc,
	  lib/actions/ferm/invert/inv_minres_array.h,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.h,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.h,
	  lib/actions/ferm/invert/inv_rel_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_sumr.h,
	  lib/actions/ferm/invert/invbicg.cc,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab.h,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/invert/invbicgstab_array.h,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1.h,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg1_array.h,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2.h,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/invert/invcg2_array.h,
	  lib/actions/ferm/invert/invcg2_timing_hacks.cc,
	  lib/actions/ferm/invert/invcg2_timing_hacks.h,
	  lib/actions/ferm/invert/invert.h,
	  lib/actions/ferm/invert/invmr.cc,
	  lib/actions/ferm/invert/invmr.h,
	  lib/actions/ferm/invert/invsumr.cc,
	  lib/actions/ferm/invert/invsumr.h,
	  lib/actions/ferm/invert/minv_rel_cg.cc,
	  lib/actions/ferm/invert/minv_rel_cg.h,
	  lib/actions/ferm/invert/minv_rel_sumr.cc,
	  lib/actions/ferm/invert/minv_rel_sumr.h,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/invert/minvcg.h,
	  lib/actions/ferm/invert/minvcg_array.cc,
	  lib/actions/ferm/invert/minvcg_array.h,
	  lib/actions/ferm/invert/minvsumr.cc,
	  lib/actions/ferm/invert/minvsumr.h,
	  lib/actions/ferm/linop/asq_dsl_s.cc,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/asqtad_dslash.h,
	  lib/actions/ferm/linop/asqtad_linop_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/asqtad_mdagm_s.cc,
	  lib/actions/ferm/linop/asqtad_mdagm_s.h,
	  lib/actions/ferm/linop/chlclovms_w.b.cc,
	  lib/actions/ferm/linop/choles.cc,
	  lib/actions/ferm/linop/dslash_array_w.h,
	  lib/actions/ferm/linop/dslash_w.h,
	  lib/actions/ferm/linop/dwffld_w.cc,
	  lib/actions/ferm/linop/dwffld_w.h,
	  lib/actions/ferm/linop/fat7_links_s.cc,
	  lib/actions/ferm/linop/improvement_terms_s.h,
	  lib/actions/ferm/linop/lDeltaLs_w.cc,
	  lib/actions/ferm/linop/lDeltaLs_w.h,
	  lib/actions/ferm/linop/lclovmpsim_w.cc,
	  lib/actions/ferm/linop/ldumul_w.cc,
	  lib/actions/ferm/linop/lg5Rherm_w.h,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.cc,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.h,
	  lib/actions/ferm/linop/lg5eps_w.cc,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/lgherm_w.h,
	  lib/actions/ferm/linop/linop.h, lib/actions/ferm/linop/linop_s.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/llincomb.h,
	  lib/actions/ferm/linop/lmdagm.h, lib/actions/ferm/linop/lopscl.h,
	  lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovddag_double_pass_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.h,
	  lib/actions/ferm/linop/lwldslash_array_sse_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_sse_w.h,
	  lib/actions/ferm/linop/lwldslash_array_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_w.h,
	  lib/actions/ferm/linop/lwldslash_base_array_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_array_w.h,
	  lib/actions/ferm/linop/lwldslash_base_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_w.h,
	  lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/makclov_w.cc,
	  lib/actions/ferm/linop/naik_term_s.cc,
	  lib/actions/ferm/linop/overlapbu_linop_w.cc,
	  lib/actions/ferm/linop/overlapbu_linop_w.h,
	  lib/actions/ferm/linop/ovlap_contfrac5d_w.h,
	  lib/actions/ferm/linop/partrat.h,
	  lib/actions/ferm/linop/prec_clover_linop_w.cc,
	  lib/actions/ferm/linop/prec_clover_linop_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_opt_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwflike_linop_base_array_w.h,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.h,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h,
	  lib/actions/ferm/qprop/asqtad_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_qprop.h,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.h,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/prec_staggered_qprop.h,
	  lib/actions/ferm/qprop/qprop.h, lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.h,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  lib/actions/gauge/gauge.h,
	  lib/actions/gauge/gaugeacts/gaugeact_factory.h,
	  lib/actions/gauge/gaugeacts/gaugeacts.h,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rbc_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.cc,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.h,
	  lib/actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_aggregate.h,
	  lib/actions/gauge/gaugebcs/gaugebc_factory.h,
	  lib/actions/gauge/gaugebcs/gaugebc_periodic.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_periodic.h,
	  lib/actions/gauge/gaugebcs/gaugebc_schroedinger.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_schroedinger.h,
	  lib/actions/gauge/gaugebcs/gaugebc_simple.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_simple.h,
	  lib/actions/gauge/gaugebcs/gaugebcs.h, lib/init/chroma_init.cc,
	  lib/init/chroma_init.h, lib/io/aniso_io.cc, lib/io/aniso_io.h,
	  lib/io/cppacs_io.cc, lib/io/cppacs_io.h, lib/io/eigen_io.cc,
	  lib/io/eigen_io.h, lib/io/follana_io_s.cc, lib/io/follana_io_s.h,
	  lib/io/gauge_io.cc, lib/io/gauge_io.h, lib/io/hamiltonian_io.cc,
	  lib/io/hamiltonian_io.h, lib/io/inline_io.cc, lib/io/inline_io.h,
	  lib/io/io.h, lib/io/io_s.h, lib/io/io_w.h, lib/io/kyugauge_io.cc,
	  lib/io/kyugauge_io.h, lib/io/kyuqprop_io.cc,
	  lib/io/kyuqprop_io.h, lib/io/milc_io.cc, lib/io/milc_io.h,
	  lib/io/monomial_io.cc, lib/io/monomial_io.h,
	  lib/io/overlap_state_info.cc, lib/io/overlap_state_info.h,
	  lib/io/param_io.cc, lib/io/param_io.h, lib/io/qprop_io.cc,
	  lib/io/qprop_io.h, lib/io/readcppacs.cc, lib/io/readcppacs.h,
	  lib/io/readmilc.cc, lib/io/readmilc.h, lib/io/readszin.cc,
	  lib/io/readszin.h, lib/io/readszinferm_w.cc,
	  lib/io/readszinferm_w.h, lib/io/readszinqprop_w.cc,
	  lib/io/readszinqprop_w.h, lib/io/smearing_io.cc,
	  lib/io/smearing_io.h, lib/io/szin_io.cc, lib/io/szin_io.h,
	  lib/io/writemilc.cc, lib/io/writemilc.h, lib/io/writeszin.cc,
	  lib/io/writeszin.h, lib/io/writeszinqprop_w.cc,
	  lib/io/writeszinqprop_w.h, lib/io/xmllog_io.h,
	  lib/io/enum_io/enum_cfgtype_io.cc,
	  lib/io/enum_io/enum_cfgtype_io.h,
	  lib/io/enum_io/enum_coeffs_io.cc,
	  lib/io/enum_io/enum_coeffs_io.h,
	  lib/io/enum_io/enum_eigenvectype_io.cc,
	  lib/io/enum_io/enum_eigenvectype_io.h,
	  lib/io/enum_io/enum_fermtype_io.cc,
	  lib/io/enum_io/enum_fermtype_io.h,
	  lib/io/enum_io/enum_gaugeacttype_io.cc,
	  lib/io/enum_io/enum_gaugeacttype_io.h,
	  lib/io/enum_io/enum_gaugebc_io.cc,
	  lib/io/enum_io/enum_gaugebc_io.h,
	  lib/io/enum_io/enum_heatbathtype_io.cc,
	  lib/io/enum_io/enum_heatbathtype_io.h,
	  lib/io/enum_io/enum_inner_solver_type_io.cc,
	  lib/io/enum_io/enum_inner_solver_type_io.h,
	  lib/io/enum_io/enum_invtype_io.cc,
	  lib/io/enum_io/enum_invtype_io.h, lib/io/enum_io/enum_io.h,
	  lib/io/enum_io/enum_md_integrator_type_io.cc,
	  lib/io/enum_io/enum_md_integrator_type_io.h,
	  lib/io/enum_io/enum_proptype_io.cc,
	  lib/io/enum_io/enum_proptype_io.h,
	  lib/io/enum_io/enum_qdpvolfmt_io.cc,
	  lib/io/enum_io/enum_qdpvolfmt_io.h,
	  lib/io/enum_io/enum_simplebctype_io.cc,
	  lib/io/enum_io/enum_simplebctype_io.h,
	  lib/io/enum_io/enum_srcsnktype_io.cc,
	  lib/io/enum_io/enum_srcsnktype_io.h,
	  lib/io/enum_io/enum_stochsrc_io.cc,
	  lib/io/enum_io/enum_stochsrc_io.h,
	  lib/io/enum_io/enum_type_map.h,
	  lib/io/enum_io/enum_wavetype_io.cc,
	  lib/io/enum_io/enum_wavetype_io.h,
	  lib/io/enum_io/enum_wvfkind_io.cc,
	  lib/io/enum_io/enum_wvfkind_io.h, lib/meas/meas.h,
	  lib/meas/eig/eig.h, lib/meas/eig/eig_s.h,
	  lib/meas/eig/eig_spec.cc, lib/meas/eig/eig_spec.h,
	  lib/meas/eig/eig_spec_array.cc, lib/meas/eig/eig_spec_array.h,
	  lib/meas/eig/eig_w.h, lib/meas/eig/gramschm.cc,
	  lib/meas/eig/gramschm.h, lib/meas/eig/gramschm_array.cc,
	  lib/meas/eig/gramschm_array.h, lib/meas/eig/ischiral_w.cc,
	  lib/meas/eig/ischiral_w.h, lib/meas/eig/ritz.cc,
	  lib/meas/eig/ritz.h, lib/meas/eig/ritz_array.cc,
	  lib/meas/eig/ritz_array.h, lib/meas/eig/sn_jacob.cc,
	  lib/meas/eig/sn_jacob.h, lib/meas/eig/sn_jacob_array.cc,
	  lib/meas/eig/sn_jacob_array.h, lib/meas/gfix/axgauge.cc,
	  lib/meas/gfix/axgauge.h, lib/meas/gfix/coulgauge.cc,
	  lib/meas/gfix/coulgauge.h, lib/meas/gfix/gfix.h,
	  lib/meas/gfix/grelax.cc, lib/meas/gfix/grelax.h,
	  lib/meas/gfix/polar_dec.cc, lib/meas/gfix/polar_dec.h,
	  lib/meas/gfix/rot_colvec.cc, lib/meas/gfix/rot_colvec.h,
	  lib/meas/glue/block.cc, lib/meas/glue/cool.cc,
	  lib/meas/glue/fuzwilp.cc, lib/meas/glue/fuzwilp.h,
	  lib/meas/glue/glue.h, lib/meas/glue/gluecor.cc,
	  lib/meas/glue/mesfield.cc, lib/meas/glue/mesfield.h,
	  lib/meas/glue/meslate.cc, lib/meas/glue/mesplq.cc,
	  lib/meas/glue/mesplq.h, lib/meas/glue/mesq.cc,
	  lib/meas/glue/polycor.cc, lib/meas/glue/polylp.cc,
	  lib/meas/glue/polylp.h, lib/meas/glue/qactden.cc,
	  lib/meas/glue/qnaive.cc, lib/meas/glue/qtopcor.cc,
	  lib/meas/glue/topol.cc, lib/meas/glue/wilslp.cc,
	  lib/meas/glue/wilslp.h, lib/meas/hadron/BuildingBlocks_w.cc,
	  lib/meas/hadron/BuildingBlocks_w.h, lib/meas/hadron/D_j_w.cc,
	  lib/meas/hadron/D_j_w.h, lib/meas/hadron/DjDk_w.cc,
	  lib/meas/hadron/DjDk_w.h, lib/meas/hadron/barcomp_w.cc,
	  lib/meas/hadron/barcomp_w.h, lib/meas/hadron/barhqlq_w.cc,
	  lib/meas/hadron/barhqlq_w.h, lib/meas/hadron/barseqsrc_w.cc,
	  lib/meas/hadron/barseqsrc_w.h, lib/meas/hadron/baryon_s.cc,
	  lib/meas/hadron/baryon_s.h, lib/meas/hadron/baryon_w.cc,
	  lib/meas/hadron/baryon_w.h, lib/meas/hadron/curcor2_w.cc,
	  lib/meas/hadron/curcor2_w.h, lib/meas/hadron/enum_loops_s.h,
	  lib/meas/hadron/formfac_w.cc, lib/meas/hadron/formfac_w.h,
	  lib/meas/hadron/hadron.h, lib/meas/hadron/hadron_corr_s.h,
	  lib/meas/hadron/hadron_s.h, lib/meas/hadron/hadron_w.h,
	  lib/meas/hadron/hadseqsrc_w.cc, lib/meas/hadron/hadseqsrc_w.h,
	  lib/meas/hadron/hybmeson_w.cc, lib/meas/hadron/hybmeson_w.h,
	  lib/meas/hadron/ks_local_loops.cc,
	  lib/meas/hadron/ks_local_loops.h, lib/meas/hadron/loops_s.h,
	  lib/meas/hadron/loops_w.cc, lib/meas/hadron/loops_w.h,
	  lib/meas/hadron/mescomp_w.cc, lib/meas/hadron/mescomp_w.h,
	  lib/meas/hadron/mesons_w.cc, lib/meas/hadron/mesons_w.h,
	  lib/meas/hadron/mesonseqsrc_w.cc,
	  lib/meas/hadron/mesonseqsrc_w.h,
	  lib/meas/hadron/mesphas_follana_s.cc,
	  lib/meas/hadron/mesphas_follana_s.h,
	  lib/meas/hadron/mesphas_s.cc, lib/meas/hadron/mesphas_s.h,
	  lib/meas/hadron/multipole_w.cc, lib/meas/hadron/multipole_w.h,
	  lib/meas/hadron/pion_local_s.cc, lib/meas/hadron/pion_local_s.h,
	  lib/meas/hadron/pion_sing_s.cc, lib/meas/hadron/pion_sing_s.h,
	  lib/meas/hadron/pions_s.cc, lib/meas/hadron/pions_s.h,
	  lib/meas/hadron/pseudoscalar_loops_s.cc,
	  lib/meas/hadron/pseudoscalar_loops_s.h,
	  lib/meas/hadron/scalar_loops_s.cc,
	  lib/meas/hadron/scalar_loops_s.h,
	  lib/meas/hadron/seqpiontest_w.cc,
	  lib/meas/hadron/seqpiontest_w.h,
	  lib/meas/hadron/seqsrc_funcmap_w.cc,
	  lib/meas/hadron/seqsrc_funcmap_w.h, lib/meas/hadron/srcfil.cc,
	  lib/meas/hadron/srcfil.h, lib/meas/hadron/srcfil_s.cc,
	  lib/meas/hadron/stag_propShift_s.cc,
	  lib/meas/hadron/stag_propShift_s.h,
	  lib/meas/hadron/stag_scalars_s.cc,
	  lib/meas/hadron/stag_scalars_s.h, lib/meas/hadron/stoch_var.cc,
	  lib/meas/hadron/stoch_var.h, lib/meas/hadron/vector_meson_s.cc,
	  lib/meas/hadron/vector_meson_s.h, lib/meas/hadron/walfil_s.cc,
	  lib/meas/hadron/walfil_s.h, lib/meas/hadron/walfil_w.cc,
	  lib/meas/hadron/walfil_w.h, lib/meas/hadron/wall_qprop_w.cc,
	  lib/meas/hadron/wall_qprop_w.h, lib/meas/hadron/walldeltaff_w.cc,
	  lib/meas/hadron/walldeltaff_w.h,
	  lib/meas/hadron/walldeltapff_w.cc,
	  lib/meas/hadron/walldeltapff_w.h, lib/meas/hadron/wallff_w.cc,
	  lib/meas/hadron/wallff_w.h, lib/meas/hadron/wallnuclff_w.cc,
	  lib/meas/hadron/wallnuclff_w.h, lib/meas/hadron/wallpionff_w.cc,
	  lib/meas/hadron/wallpionff_w.h, lib/meas/hadron/wallrhoff_w.cc,
	  lib/meas/hadron/wallrhoff_w.h, lib/meas/hadron/wallrhopiff_w.cc,
	  lib/meas/hadron/wallrhopiff_w.h, lib/meas/hadron/z2_src.cc,
	  lib/meas/hadron/z2_src.h,
	  lib/meas/inline/abs_inline_measurement.h,
	  lib/meas/inline/abs_inline_measurement_factory.h,
	  lib/meas/inline/inline.h, lib/meas/inline/inline_aggregate.cc,
	  lib/meas/inline/inline_aggregate.h,
	  lib/meas/inline/make_xml_file.cc,
	  lib/meas/inline/make_xml_file.h, lib/meas/inline/eig/eig.h,
	  lib/meas/inline/eig/inline_eig_aggregate.cc,
	  lib/meas/inline/eig/inline_eig_aggregate.h,
	  lib/meas/inline/eig/inline_eigbnds.cc,
	  lib/meas/inline/eig/inline_eigbnds.h,
	  lib/meas/inline/glue/glue.h,
	  lib/meas/inline/glue/inline_fuzwilp.cc,
	  lib/meas/inline/glue/inline_fuzwilp.h,
	  lib/meas/inline/glue/inline_glue_aggregate.cc,
	  lib/meas/inline/glue/inline_glue_aggregate.h,
	  lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_plaquette.h,
	  lib/meas/inline/glue/inline_polylp.cc,
	  lib/meas/inline/glue/inline_polylp.h,
	  lib/meas/inline/glue/inline_wilslp.cc,
	  lib/meas/inline/glue/inline_wilslp.h,
	  lib/meas/inline/hadron/hadron.h,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.cc,
	  lib/meas/inline/hadron/inline_bar3ptfn_w.h,
	  lib/meas/inline/hadron/inline_building_blocks_w.cc,
	  lib/meas/inline/hadron/inline_building_blocks_w.h,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_hadron_aggregate.h,
	  lib/meas/inline/hadron/inline_hadspec_w.cc,
	  lib/meas/inline/hadron/inline_hadspec_w.h,
	  lib/meas/inline/hadron/inline_make_source_w.cc,
	  lib/meas/inline/hadron/inline_make_source_w.h,
	  lib/meas/inline/hadron/inline_mres_w.cc,
	  lib/meas/inline/hadron/inline_mres_w.h,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.h,
	  lib/meas/inline/hadron/inline_multipole_w.cc,
	  lib/meas/inline/hadron/inline_multipole_w.h,
	  lib/meas/inline/hadron/inline_propagator_w.cc,
	  lib/meas/inline/hadron/inline_propagator_w.h,
	  lib/meas/inline/hadron/inline_qpropqio_w.cc,
	  lib/meas/inline/hadron/inline_qpropqio_w.h,
	  lib/meas/inline/hadron/inline_qqbar_w.cc,
	  lib/meas/inline/hadron/inline_qqbar_w.h,
	  lib/meas/inline/hadron/inline_qqq_w.cc,
	  lib/meas/inline/hadron/inline_qqq_w.h,
	  lib/meas/inline/hadron/inline_seqsource_w.cc,
	  lib/meas/inline/hadron/inline_seqsource_w.h,
	  lib/meas/inline/hadron/inline_sink_smear_w.cc,
	  lib/meas/inline/hadron/inline_sink_smear_w.h,
	  lib/meas/inline/hadron/inline_spectrumOct_w.cc,
	  lib/meas/inline/hadron/inline_spectrumOct_w.h,
	  lib/meas/inline/hadron/inline_spectrum_w.cc,
	  lib/meas/inline/hadron/inline_spectrum_w.h,
	  lib/meas/inline/hadron_s/hadron_s.h,
	  lib/meas/inline/hadron_s/inline_hadron_aggregate.h,
	  lib/meas/inline/hadron_s/inline_spectrum_s.cc,
	  lib/meas/inline/hadron_s/inline_spectrum_s.h,
	  lib/meas/inline/hadron_s/util_baryon_s.cc,
	  lib/meas/inline/hadron_s/util_compute_meson_s.cc,
	  lib/meas/inline/hadron_s/util_compute_meson_s.h,
	  lib/meas/inline/hadron_s/util_compute_quark_prop_s.cc,
	  lib/meas/inline/hadron_s/util_compute_quark_prop_s.h,
	  lib/meas/inline/hadron_s/util_compute_singlet_ps.cc,
	  lib/meas/inline/io/inline_erase_obj.cc,
	  lib/meas/inline/io/inline_erase_obj.h,
	  lib/meas/inline/io/inline_gaussian_obj.cc,
	  lib/meas/inline/io/inline_gaussian_obj.h,
	  lib/meas/inline/io/inline_io_aggregate.cc,
	  lib/meas/inline/io/inline_io_aggregate.h,
	  lib/meas/inline/io/inline_list_obj.cc,
	  lib/meas/inline/io/inline_list_obj.h,
	  lib/meas/inline/io/inline_nersc_write_obj.cc,
	  lib/meas/inline/io/inline_nersc_write_obj.h,
	  lib/meas/inline/io/inline_qio_read_obj.cc,
	  lib/meas/inline/io/inline_qio_read_obj.h,
	  lib/meas/inline/io/inline_qio_write_erase_obj.cc,
	  lib/meas/inline/io/inline_qio_write_erase_obj.h,
	  lib/meas/inline/io/inline_qio_write_obj.cc,
	  lib/meas/inline/io/inline_qio_write_obj.h,
	  lib/meas/inline/io/inline_snarf_obj.cc,
	  lib/meas/inline/io/inline_snarf_obj.h,
	  lib/meas/inline/io/inline_szin_write_obj.cc,
	  lib/meas/inline/io/inline_szin_write_obj.h,
	  lib/meas/inline/io/io.h, lib/meas/inline/io/named_objmap.h,
	  lib/meas/inline/io/qio_read_obj_funcmap.cc,
	  lib/meas/inline/io/qio_read_obj_funcmap.h,
	  lib/meas/inline/io/qio_write_obj_funcmap.cc,
	  lib/meas/inline/io/qio_write_obj_funcmap.h,
	  lib/meas/inline/io/szin_write_obj_funcmap.cc,
	  lib/meas/inline/io/szin_write_obj_funcmap.h,
	  lib/meas/inline/smear/inline_ape_smear.cc,
	  lib/meas/inline/smear/inline_ape_smear.h,
	  lib/meas/inline/smear/inline_hyp_smear.cc,
	  lib/meas/inline/smear/inline_hyp_smear.h,
	  lib/meas/inline/smear/inline_smear_aggregate.cc,
	  lib/meas/inline/smear/inline_smear_aggregate.h,
	  lib/meas/inline/smear/inline_stout_smear.cc,
	  lib/meas/inline/smear/inline_stout_smear.h,
	  lib/meas/inline/smear/smear.h, lib/meas/pbp/mespbg5p_w.cc,
	  lib/meas/pbp/mespbp_s.cc, lib/meas/pbp/mespbp_w.cc,
	  lib/meas/pbp/ovpbg5p_w.cc, lib/meas/pbp/pbg5p_w.cc,
	  lib/meas/pbp/pbp.h, lib/meas/pbp/stagpbp_s.cc,
	  lib/meas/schrfun/schrfun.h, lib/meas/schrfun/sfcurcor_w.cc,
	  lib/meas/schrfun/sfpcac_w.cc, lib/meas/smear/ape_smear.cc,
	  lib/meas/smear/ape_smear.h, lib/meas/smear/displacement.cc,
	  lib/meas/smear/displacement.h, lib/meas/smear/fuzz_smear.cc,
	  lib/meas/smear/fuzz_smear.h, lib/meas/smear/gaus_smear.cc,
	  lib/meas/smear/gaus_smear.h, lib/meas/smear/hyp_smear.cc,
	  lib/meas/smear/hyp_smear.h, lib/meas/smear/hyp_smear3d.cc,
	  lib/meas/smear/hyp_smear3d.h, lib/meas/smear/jacobi_smear.cc,
	  lib/meas/smear/laplacian.cc, lib/meas/smear/laplacian.h,
	  lib/meas/smear/sink_smear2.cc, lib/meas/smear/sink_smear2.h,
	  lib/meas/smear/smear.h, lib/meas/smear/stout_smear.cc,
	  lib/meas/smear/stout_smear.h, lib/meas/smear/wupp_smear.cc,
	  lib/meas/smear/wvfkind.h, lib/meas/sources/d_src_w.cc,
	  lib/meas/sources/d_src_w.h, lib/meas/sources/p_src_w.cc,
	  lib/meas/sources/p_src_w.h, lib/meas/sources/sources.h,
	  lib/meas/sources/sources_s.h, lib/meas/sources/sources_w.h,
	  lib/meas/sources/srcsnktype.h, lib/meas/sources/wavetype.h,
	  lib/meas/trln/pade_trln_w.cc, lib/meas/trln/trln.h,
	  lib/update/update.h, lib/update/heatbath/hb_params.h,
	  lib/update/heatbath/heatbath.h, lib/update/heatbath/mciter.cc,
	  lib/update/heatbath/mciter.h, lib/update/heatbath/mciter32.cc,
	  lib/update/heatbath/mciter32.h, lib/update/heatbath/monte.cc,
	  lib/update/heatbath/monte.h,
	  lib/update/heatbath/su2_hb_update.cc,
	  lib/update/heatbath/su2_hb_update.h,
	  lib/update/heatbath/su3_hb_sweep.cc,
	  lib/update/heatbath/su3_hb_sweep.h, lib/update/heatbath/su3hb.cc,
	  lib/update/heatbath/su3hb.h, lib/update/heatbath/su3over.cc,
	  lib/update/heatbath/su3over.h, lib/update/heatbath/u_staple.cc,
	  lib/update/heatbath/u_staple.h,
	  lib/update/molecdyn/field_state.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/hamiltonian/abs_hamiltonian.h,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  lib/update/molecdyn/hamiltonian/hamiltonian.h,
	  lib/update/molecdyn/hmc/abs_hmc.h,
	  lib/update/molecdyn/hmc/global_metropolis_accrej.cc,
	  lib/update/molecdyn/hmc/global_metropolis_accrej.h,
	  lib/update/molecdyn/hmc/hmc.h, lib/update/molecdyn/hmc/lcm_hmc.h,
	  lib/update/molecdyn/integrator/abs_integrator.h,
	  lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/integrator_aggregate.h,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.h,
	  lib/update/molecdyn/integrator/md_integrator_factory.h,
	  lib/update/molecdyn/monomial/abs_monomial.h,
	  lib/update/molecdyn/monomial/gauge_monomial.cc,
	  lib/update/molecdyn/monomial/gauge_monomial.h,
	  lib/update/molecdyn/monomial/genapprox.cc,
	  lib/update/molecdyn/monomial/genapprox.h,
	  lib/update/molecdyn/monomial/monomial.h,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.cc,
	  lib/update/molecdyn/monomial/monomial_aggregate_w.h,
	  lib/update/molecdyn/monomial/monomial_factory.h,
	  lib/update/molecdyn/monomial/monomial_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/prec_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/prec_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/prec_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/prec_two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_one_flavor_rat_monomial_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.cc,
	  lib/update/molecdyn/monomial/unprec_two_flavor_monomial_w.h,
	  lib/update/molecdyn/old/clovdsduf_w.cc,
	  lib/update/molecdyn/old/dsdu.cc,
	  lib/update/molecdyn/old/dsduf_s.cc,
	  lib/update/molecdyn/old/dsduf_w.cc,
	  lib/update/molecdyn/old/hamilton.h,
	  lib/update/molecdyn/old/hybrid.cc,
	  lib/update/molecdyn/old/hybrid.h,
	  lib/update/molecdyn/old/molecdyn.h,
	  lib/update/molecdyn/old/ovdsduf_w.cc,
	  lib/update/molecdyn/old/polydsduf_s.cc,
	  lib/update/molecdyn/old/polydsduf_w.cc,
	  lib/update/molecdyn/old/ratdsduf_s.cc,
	  lib/update/molecdyn/old/ratdsduf_w.cc,
	  lib/update/molecdyn/old/stdsduf_s.cc,
	  lib/update/molecdyn/old/triacntr_w.cc,
	  lib/update/molecdyn/old/wils_hamsys_w.h,
	  lib/update/molecdyn/old/wldsduf_w.cc,
	  lib/update/molecdyn/old/wlhdsduf_w.cc,
	  lib/update/molecdyn/old/mese/clmesferm_w.cc,
	  lib/update/molecdyn/old/mese/mese.cc,
	  lib/update/molecdyn/old/mese/mesferm_w.cc,
	  lib/update/molecdyn/old/mese/mesmom.cc,
	  lib/update/molecdyn/old/mese/ratmesferm_s.cc,
	  lib/update/molecdyn/old/mese/ratmesferm_w.cc,
	  lib/update/molecdyn/old/mese/wlmesferm_w.cc,
	  lib/update/molecdyn/old/noise/frmnse_w.cc,
	  lib/update/molecdyn/old/noise/polyfrmnse_s.cc,
	  lib/update/molecdyn/old/noise/polyfrmnse_w.cc,
	  lib/update/molecdyn/old/noise/ratfrmnse_s.cc,
	  lib/update/molecdyn/old/noise/ratfrmnse_w.cc,
	  lib/update/molecdyn/old/noise/wlfrmnse_w.cc,
	  lib/update/molecdyn/old/step/camptrj.cc,
	  lib/update/molecdyn/old/step/endoftrj.cc,
	  lib/update/molecdyn/old/step/hybtrj.cc,
	  lib/update/molecdyn/old/step/interpol.cc,
	  lib/update/molecdyn/old/step/leapp.cc,
	  lib/update/molecdyn/old/step/leappmx.cc,
	  lib/update/molecdyn/old/step/leapu.cc,
	  lib/update/molecdyn/old/step/refrsh.cc,
	  lib/update/molecdyn/old/step/rhybtrj.cc,
	  lib/update/molecdyn/predictor/chrono_predictor.h,
	  lib/update/molecdyn/predictor/chrono_predictor_factory.h,
	  lib/update/molecdyn/predictor/circular_buffer.h,
	  lib/update/molecdyn/predictor/last_solution_predictor.cc,
	  lib/update/molecdyn/predictor/last_solution_predictor.h,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.h,
	  lib/update/molecdyn/predictor/lu_solve.cc,
	  lib/update/molecdyn/predictor/lu_solve.h,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.h,
	  lib/update/molecdyn/predictor/predictor.h,
	  lib/update/molecdyn/predictor/predictor_aggregate.cc,
	  lib/update/molecdyn/predictor/predictor_aggregate.h,
	  lib/update/molecdyn/predictor/zero_guess_predictor.cc,
	  lib/update/molecdyn/predictor/zero_guess_predictor.h,
	  lib/util/util.h, lib/util/ferm/diractodr.cc,
	  lib/util/ferm/diractodr.h, lib/util/ferm/ferm.h,
	  lib/util/ferm/ferm_s.h, lib/util/ferm/ferm_w.h,
	  lib/util/ferm/gammasgn_w.cc, lib/util/ferm/gammasgn_w.h,
	  lib/util/ferm/paulitodr.cc, lib/util/ferm/paulitodr.h,
	  lib/util/ferm/tdiractodr.cc, lib/util/ferm/tdiractodr.h,
	  lib/util/ferm/transf.cc, lib/util/ferm/transf.h,
	  lib/util/ft/ft.h, lib/util/ft/sftmom.cc, lib/util/ft/sftmom.h,
	  lib/util/gauge/eesu2.cc, lib/util/gauge/eesu2.h,
	  lib/util/gauge/eesu3.cc, lib/util/gauge/eesu3.h,
	  lib/util/gauge/eeu1.cc, lib/util/gauge/eeu1.h,
	  lib/util/gauge/expm12.cc, lib/util/gauge/expm12.h,
	  lib/util/gauge/expmat.cc, lib/util/gauge/expmat.h,
	  lib/util/gauge/expsu3.cc, lib/util/gauge/expsu3.h,
	  lib/util/gauge/gauge.h, lib/util/gauge/gauge_s.h,
	  lib/util/gauge/gauge_startup.cc, lib/util/gauge/gauge_startup.h,
	  lib/util/gauge/hotst.cc, lib/util/gauge/hotst.h,
	  lib/util/gauge/reunit.cc, lib/util/gauge/reunit.h,
	  lib/util/gauge/rgauge.cc, lib/util/gauge/rgauge.h,
	  lib/util/gauge/stag_phases_s.cc, lib/util/gauge/stag_phases_s.h,
	  lib/util/gauge/su2extract.cc, lib/util/gauge/su2extract.h,
	  lib/util/gauge/su3proj.cc, lib/util/gauge/su3proj.h,
	  lib/util/gauge/sun_proj.cc, lib/util/gauge/sun_proj.h,
	  lib/util/gauge/sunfill.cc, lib/util/gauge/sunfill.h,
	  lib/util/gauge/taproj.cc, lib/util/gauge/taproj.h,
	  lib/util/gauge/unit_check.cc, lib/util/gauge/unit_check.h,
	  lib/util/info/info.h, lib/util/info/printgeom.cc,
	  lib/util/info/printgeom.h, lib/util/info/proginfo.cc,
	  lib/util/info/proginfo.h, mainprogs/Makefile.am,
	  mainprogs/mainprogs.h, mainprogs/main/ExampleBuildingBlocks.cc,
	  mainprogs/main/Makefile.am, mainprogs/main/cfgtransf.cc,
	  mainprogs/main/chroma.cc,
	  mainprogs/main/collect_multi_propcomp.cc,
	  mainprogs/main/collect_propcomp.cc, mainprogs/main/hmc.cc,
	  mainprogs/main/main.h, mainprogs/main/multi_propagator_comp.cc,
	  mainprogs/main/propagator_comp.cc,
	  mainprogs/main/propagator_hack.cc, mainprogs/main/purgaug.cc,
	  mainprogs/main/qpropadd.cc, mainprogs/main/qpropgfix.cc,
	  mainprogs/main/qpropqio.cc, mainprogs/main/qproptransf.cc,
	  mainprogs/main/qproptrev.cc, mainprogs/main/spectrum_s.cc,
	  mainprogs/main/wallformfac.cc, mainprogs/tests/INPUT_W.xml,
	  mainprogs/tests/INPUT_t_propagator_twisted.xml,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/invcg2_prec_wilson.cc,
	  mainprogs/tests/invcg2_prec_wilson.h,
	  mainprogs/tests/invcg2_timing_hacks_2.cc,
	  mainprogs/tests/invcg2_timing_hacks_2.h,
	  mainprogs/tests/invcg2_timing_hacks_3.cc,
	  mainprogs/tests/invcg2_timing_hacks_3.h,
	  mainprogs/tests/t_ape_smear.cc, mainprogs/tests/t_bicgstab.cc,
	  mainprogs/tests/t_circular_buffer.cc,
	  mainprogs/tests/t_conslinop.cc, mainprogs/tests/t_disc_loop_s.cc,
	  mainprogs/tests/t_dslashm.cc, mainprogs/tests/t_dwf4d.cc,
	  mainprogs/tests/t_dwflinop.cc, mainprogs/tests/t_dwflocality.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_follana_io_s.cc,
	  mainprogs/tests/t_follana_pion_s.cc,
	  mainprogs/tests/t_formfac.cc, mainprogs/tests/t_fuzwilp.cc,
	  mainprogs/tests/t_fuzwilp.out.test,
	  mainprogs/tests/t_g5eps_bj.cc, mainprogs/tests/t_gauge_force.cc,
	  mainprogs/tests/t_gfix.cc, mainprogs/tests/t_hamiltonian.cc,
	  mainprogs/tests/t_hamsys.cc, mainprogs/tests/t_hamsys_ferm.cc,
	  mainprogs/tests/t_hmc_pg.cc, mainprogs/tests/t_hypsmear.cc,
	  mainprogs/tests/t_invborici.cc,
	  mainprogs/tests/t_invert3_precwilson.cc,
	  mainprogs/tests/t_invert4_precwilson.cc,
	  mainprogs/tests/t_invrelcg.cc, mainprogs/tests/t_io.cc,
	  mainprogs/tests/t_leapfrog.cc, mainprogs/tests/t_lower_tests.cc,
	  mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_array.cc,
	  mainprogs/tests/t_lwldslash_pab.cc,
	  mainprogs/tests/t_lwldslash_sse.cc,
	  mainprogs/tests/t_mesons_w.cc, mainprogs/tests/t_mesplq.cc,
	  mainprogs/tests/t_mres_4d.cc, mainprogs/tests/t_msumr.cc,
	  mainprogs/tests/t_neflinop.cc, mainprogs/tests/t_ov_pbp.cc,
	  mainprogs/tests/t_overbu.cc, mainprogs/tests/t_ovlap5d_bj.cc,
	  mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_ovlap_double_pass.cc,
	  mainprogs/tests/t_prec_contfrac.cc,
	  mainprogs/tests/t_prec_nef.cc,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_prec_wilson_force.cc,
	  mainprogs/tests/t_precact.cc, mainprogs/tests/t_precact_sse.cc,
	  mainprogs/tests/t_preccfz.cc, mainprogs/tests/t_preccfz_opt.cc,
	  mainprogs/tests/t_precdwf.cc, mainprogs/tests/t_precnef.cc,
	  mainprogs/tests/t_propagator_fuzz_baryon_s.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_nrqcd.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_twisted.cc,
	  mainprogs/tests/t_propagator_w.cc,
	  mainprogs/tests/t_read_eigen.cc, mainprogs/tests/t_rel_gmresr.cc,
	  mainprogs/tests/t_remez.cc, mainprogs/tests/t_ritz.cc,
	  mainprogs/tests/t_ritz5d_KS.cc, mainprogs/tests/t_ritz_KS.cc,
	  mainprogs/tests/t_seqsource.cc, mainprogs/tests/t_spprod.cc,
	  mainprogs/tests/t_su3.cc, mainprogs/tests/t_sumr.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_wilson_force.cc,
	  mainprogs/tests/t_wilslp.cc, mainprogs/tests/t_wlinvcg.cc,
	  mainprogs/tests/tests.h, other_libs/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/AUTHORS,
	  other_libs/intel_sse_wilson_dslash/COPYING,
	  other_libs/intel_sse_wilson_dslash/INSTALL,
	  other_libs/intel_sse_wilson_dslash/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/NEWS,
	  other_libs/intel_sse_wilson_dslash/README,
	  other_libs/intel_sse_wilson_dslash/acinclude.m4,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure,
	  other_libs/intel_sse_wilson_dslash/configure.ac,
	  other_libs/intel_sse_wilson_dslash/config/config.guess,
	  other_libs/intel_sse_wilson_dslash/config/config.sub,
	  other_libs/intel_sse_wilson_dslash/config/depcomp,
	  other_libs/intel_sse_wilson_dslash/config/install-sh,
	  other_libs/intel_sse_wilson_dslash/config/missing,
	  other_libs/intel_sse_wilson_dslash/config/mkinstalldirs,
	  other_libs/intel_sse_wilson_dslash/examples/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/examples/rannyu.c,
	  other_libs/intel_sse_wilson_dslash/examples/rannyu.h,
	  other_libs/intel_sse_wilson_dslash/examples/t_dslash.c,
	  other_libs/intel_sse_wilson_dslash/examples/t_wnxtwlcg.c,
	  other_libs/intel_sse_wilson_dslash/examples/test.h,
	  other_libs/intel_sse_wilson_dslash/include/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/include/sse32.h,
	  other_libs/intel_sse_wilson_dslash/include/sse64.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_align.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_config.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_config_internal.h.in,
	  other_libs/intel_sse_wilson_dslash/lib/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/lib/out,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/nopad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/nopad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/p4_pad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/p4_pad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/scalar/shift_tables.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/32bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/32bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/64bit/cg/sse_cg_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/64bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/nopad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/nopad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/p4_pad/packer.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/packer/p4_pad/qdp_packer.cc,
	  scripts/build_include_headers.pl,
	  scripts/build_libchroma_sources.pl, scripts/config.pl,
	  scripts/formfact_pion.pl, scripts/run_xmldiff.pl,
	  scripts/strip_bar3ptfn.pl, scripts/strip_spectrum_w.pl,
	  scripts/wallformfac_delta.pl, scripts/wallformfac_nucl.pl,
	  scripts/wallformfac_pion.pl, scripts/wallformfac_rhopi.pl,
	  tests/gfix.cfg1, tests/gtransf.lime1, tests/test_purgaug.cfg1,
	  tests/ExampleBuildingBlocks/examplebb_v1.linux-scalar.xml,
	  tests/ExampleBuildingBlocks/examplebb_v1.xml.ini,
	  tests/bar3ptfn/bar3ptfn_nonrel_v7.linux-scalar-intel.dat,
	  tests/bar3ptfn/bar3ptfn_nonrel_v7.linux-scalar-intel.xml,
	  tests/bar3ptfn/bar3ptfn_nonrel_v7.xml.ini,
	  tests/bar3ptfn/bar3ptfn_v3.ini, tests/bar3ptfn/bar3ptfn_v4.ini,
	  tests/bar3ptfn/bar3ptfn_v4.linux-scalar-intel.xml.gz,
	  tests/bar3ptfn/bar3ptfn_v4.linux-scalar.nml.bz2,
	  tests/bar3ptfn/bar3ptfn_v4.xml.ini,
	  tests/bar3ptfn/bar3ptfn_v5.linux-scalar-intel.dat,
	  tests/bar3ptfn/bar3ptfn_v5.linux-scalar-intel.xml,
	  tests/bar3ptfn/bar3ptfn_v5.xml.ini,
	  tests/bar3ptfn/bar3ptfn_v6.linux-scalar-intel.dat,
	  tests/bar3ptfn/bar3ptfn_v6.linux-scalar-intel.xml,
	  tests/bar3ptfn/bar3ptfn_v6.xml.ini,
	  tests/bar3ptfn/test_bar3ptfn_v6.csh, tests/cfgtransf/gfix.ini,
	  tests/cfgtransf/gfix.linux-scalar-intel.xml,
	  tests/chroma/chroma_eigbnds.xml.ini,
	  tests/chroma/chroma_make_source-bb.xml.ini,
	  tests/chroma/chroma_make_source-qqq.xml.ini,
	  tests/chroma/chroma_simple.xml.ini,
	  tests/chroma/chroma_twisted_bc_test.xml.ini,
	  tests/chroma/hadron/building_blocks/bb-v2.ini.xml,
	  tests/chroma/hadron/building_blocks/bb-v2.out.xml,
	  tests/chroma/hadron/make_source/make_source-sh-v5.ini.xml,
	  tests/chroma/hadron/make_source/make_source-sh-v5.out.xml,
	  tests/chroma/hadron/mres/mres-v1.ini.xml,
	  tests/chroma/hadron/mres/mres-v1.out.xml,
	  tests/chroma/hadron/propagator/prec_wilson-v7.ini.xml,
	  tests/chroma/hadron/propagator/prec_wilson-v7.out.xml,
	  tests/chroma/hadron/qqbar/qqbar-v4.ini.xml,
	  tests/chroma/hadron/qqbar/qqbar-v4.out.xml,
	  tests/chroma/hadron/qqq/qqq-v4.ini.xml,
	  tests/chroma/hadron/qqq/qqq-v4.out.xml,
	  tests/chroma/hadron/seqsource/seqsource-v2.ini.xml,
	  tests/chroma/hadron/seqsource/seqsource-v2.out.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing-v4.ini.xml,
	  tests/chroma/hadron/sink_smear/sink_smearing-v4.out.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.ini.xml,
	  tests/chroma/hadron/spectrum/spectrum-v12.out.xml,
	  tests/chroma/hadron/spectrum/spectrum.dat.xml,
	  tests/chroma/io/nersc_write_obj/nersc_write_obj.ini.xml,
	  tests/chroma/io/nersc_write_obj/nersc_write_obj.out.xml,
	  tests/chroma/io/qio_read_obj/qio_read_obj.ini.xml,
	  tests/chroma/io/qio_read_obj/qio_read_obj.out.xml,
	  tests/chroma/io/qio_write_obj/qio_write_obj.ini.xml,
	  tests/chroma/io/qio_write_obj/qio_write_obj.out.xml,
	  tests/chroma/io/szin_write_obj/szin_write_obj.ini.xml,
	  tests/chroma/io/szin_write_obj/szin_write_obj.out.xml,
	  tests/chroma/smear/ape_smear/ape_smear_v2.ini.xml,
	  tests/chroma/smear/ape_smear/ape_smear_v2.out.xml,
	  tests/chroma/smear/hyp_smear/hyp_smear_v4.ini.xml,
	  tests/chroma/smear/hyp_smear/hyp_smear_v4.out.xml,
	  tests/chroma/smear/stout_smear/stout_smear_v2.ini.xml,
	  tests/chroma/smear/stout_smear/stout_smear_v2.out.xml,
	  tests/heatbath/b5.6_xi1_4_4_4_4,
	  tests/hmc/dbw2_bp764_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  tests/hmc/hmc.prec_1flav_dwf.xml.ini,
	  tests/hmc/hmc.prec_1flav_wilson.xml.ini,
	  tests/hmc/hmc.prec_3flav_dwf.xml.ini,
	  tests/hmc/hmc.prec_contfrac.xml.ini,
	  tests/hmc/hmc.prec_dwf.xml.ini,
	  tests/hmc/hmc.prec_mixed_wilson.xml.ini,
	  tests/hmc/hmc.prec_parwilson.xml.ini,
	  tests/hmc/hmc.prec_wilson.xml.ini, tests/hmc/hmctest.in.xml,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6.xml.ini,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6_bjoo.xml.ini,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  tests/hmc/iw_b2p2_8_16_cfz_Nf3_m0p03_ls8_dt0p005.ini.xml,
	  tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini,
	  tests/hypsmear/apesmear_v2.xml.ini,
	  tests/hypsmear/chroma_hypsmear4d.xml.ini,
	  tests/hypsmear/example_hypsmear_input_v3.xml,
	  tests/hypsmear/hypsmear_v1.linux-scalar-intel.xml,
	  tests/hypsmear/hypsmear_v1.xml.ini,
	  tests/hypsmear/hypsmear_v2.linux-scalar-intel.xml,
	  tests/hypsmear/hypsmear_v2.xml.ini,
	  tests/hypsmear/hypsmear_v3.linux-scalar-intel.xml,
	  tests/hypsmear/hypsmear_v3.xml.ini,
	  tests/m_res4d/mres4_tanh.xml.ini,
	  tests/m_res4d/mres4_zolo_nef.xml.ini,
	  tests/m_res4d/prop_CONTFRAC_BORICI.xml.ini,
	  tests/m_res4d/prop_NEF_BORICI.linux-scalar-intel.xml,
	  tests/m_res4d/prop_NEF_BORICI.xml.ini,
	  tests/m_res4d/t_mres_4d.linux-scalar-intel.xml,
	  tests/make_source/make_source_point_src_v5.linux-scalar-intel.xml,
	  tests/make_source/make_source_point_src_v5.xml.ini,
	  tests/make_source/make_source_v2.linux-scalar-intel.xml,
	  tests/make_source/make_source_v2.xml.ini,
	  tests/make_source/make_source_v3.linux-scalar-intel.xml,
	  tests/make_source/make_source_v3.xml.ini,
	  tests/make_source/make_source_v4.linux-scalar-intel.xml,
	  tests/make_source/make_source_v4.xml.ini,
	  tests/make_source/make_source_v5.linux-scalar-intel.xml,
	  tests/make_source/make_source_v5.xml.ini,
	  tests/make_source/make_source_wall_v5.linux-scalar-intel.xml,
	  tests/make_source/make_source_wall_v5.xml.ini,
	  tests/multi_propagator/multi_propagator_zolo4_v5.linux-scalar-intel.xml,
	  tests/multi_propagator/multi_propagator_zolo4_v5.xml.ini,
	  tests/multi_propagator_comp/collect_multi_propcomp_szinev.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/collect_propcomp.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c0.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c1.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c2.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.xml.ini,
	  tests/multi_propagator_comp/run.sh,
	  tests/multi_propagator_comp/run_szinev.sh,
	  tests/parwilson/CP_PACS.config,
	  tests/parwilson/INPUT_t_propagator_twisted.xml,
	  tests/parwilson/t_propagator_twisted.xml,
	  tests/prec_twoflav_wilson_monomial/t_prec_twoflav_wilson_monomial.xml.ini,
	  tests/propagator/propagator_ovdwf_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_ovdwf_v7.xml.ini,
	  tests/propagator/propagator_prec_dwf_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_dwf_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_b1c1_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_partfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_partfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_b1c1_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_prec_tanh_nef_v7.xml.ini,
	  tests/propagator/propagator_prec_zolo_nef_b1c1_v7.xml.ini,
	  tests/propagator/propagator_prec_zolo_nef_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ht_contfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_unprec_ovext_v7.xml.ini,
	  tests/propagator/propagator_unprec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_unprec_tanh_nef_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_tanh_nef_v7.xml.ini,
	  tests/propagator/propagator_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_v7.xml.ini,
	  tests/propagator/propagator_zolo4d_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_zolo4d_v7.xml.ini,
	  tests/propagator/propagator_zolo_dwftransf4d_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_zolo_dwftransf4d_v7.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c1.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c2.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_szinev_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c0.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c1.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c1.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c2.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c2.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_szinev_c0.xml.ini,
	  tests/propagator_comp/run_zolo4.sh,
	  tests/propagator_comp/run_zolo5.sh,
	  tests/propagator_w/INPUT_W.xml,
	  tests/propagator_w/t_propagator_w.xml,
	  tests/propagator_w/t_propagator_w_METRIC.xml,
	  tests/purgaug/purgaug.xml.ini, tests/purgaug/w_plaq.xsl,
	  tests/qpropadd/qpropadd_v1.xml.ini,
	  tests/qpropgfix/qpropgfix_v1.linux-scalar-intel.xml,
	  tests/qpropgfix/qpropgfix_v1.xml.ini,
	  tests/qpropqio/qpropqio_v1.xml.ini,
	  tests/qproptransf/prop.xml.ini,
	  tests/qproptransf/prop_milc_102.xml.ini,
	  tests/qproptransf/qtransf_seqprop_v1.xml.ini,
	  tests/qproptransf/qtransf_seqprop_v2.linux-scalar-intel.xml,
	  tests/qproptransf/qtransf_seqprop_v2.xml.ini,
	  tests/qproptransf/seqprop.xml.ini,
	  tests/qproptransf/seqsrc.xml.ini,
	  tests/qproptransf/seqsrc_milc_102.xml.ini,
	  tests/qproptrev/qproptrev_v1.xml.ini,
	  tests/qqq_w/chroma_qqq_v4.xml.ini,
	  tests/qqq_w/chroma_qqq_v4.xml.linux-scalar-intel.xml,
	  tests/qqq_w/qqq_w_v4.linux-scalar-intel.qqq_pt,
	  tests/qqq_w/qqq_w_v4.linux-scalar-intel.qqq_smeared,
	  tests/qqq_w/qqq_w_v4.linux-scalar-intel.xml,
	  tests/qqq_w/qqq_w_v4.xml.ini,
	  tests/seqprop/seqprop_nonrel_v3.linux-scalar-intel.xml,
	  tests/seqprop/seqprop_nonrel_v3.xml.ini,
	  tests/seqprop/seqprop_v1.linux-scalar-intel.xml,
	  tests/seqprop/seqprop_v1.xml.ini,
	  tests/seqprop/seqprop_v2.linux-scalar-intel.xml,
	  tests/seqprop/seqprop_v2.xml.ini,
	  tests/seqprop/seqprop_v3.linux-scalar-intel.xml,
	  tests/seqprop/seqprop_v3.xml.ini,
	  tests/seqprop_comp/seqprop_collect_nonrel_v3.linux-scalar-intel.xml,
	  tests/seqprop_comp/seqprop_comp_nonrel_v3.xml.ini,
	  tests/seqprop_comp/seqprop_comp_v3.xml.ini,
	  tests/seqsource/prop_seqsource_v6.linux-scalar-intel.xml,
	  tests/seqsource/prop_seqsource_v6.xml.ini,
	  tests/seqsource/seqsource_v1.linux-scalar-intel.xml,
	  tests/seqsource/seqsource_v1.xml.ini,
	  tests/seqsource/t_seqsource.xml.ini,
	  tests/seqsource/test_prop_seqsource_comp_nr_v1.csh,
	  tests/seqsource/test_prop_seqsource_comp_v1.csh,
	  tests/seqsource/test_prop_seqsource_nr_v1.csh,
	  tests/seqsource/test_prop_seqsource_v1.csh,
	  tests/sink_smearing/chroma_sink_smear_v4.linux-scalar-intel.xml,
	  tests/sink_smearing/chroma_sink_smear_v4.xml.ini,
	  tests/sink_smearing/sink_smearing_v4.linux-scalar-intel.xml,
	  tests/sink_smearing/sink_smearing_v4.xml.ini,
	  tests/spectrum_s/spectrum_s.xml,
	  tests/spectrum_w/spectrum_w_v10.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_w_v10.xml.ini,
	  tests/spectrum_w/spectrum_w_v11.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_w_v11.xml.ini,
	  tests/spectrum_w/spectrum_w_v5.ini,
	  tests/spectrum_w/spectrum_w_v6.ini,
	  tests/spectrum_w/spectrum_w_v6.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_w_v6.linux-scalar.nml.bz2,
	  tests/spectrum_w/spectrum_w_v6.xml.ini,
	  tests/spectrum_w/spectrum_w_v7.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_w_v7.xml.ini,
	  tests/spectrum_w/spectrum_w_v8.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_w_v8.xml.ini,
	  tests/spectrum_w/spectrum_w_v9.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_w_v9.xml.ini,
	  tests/spectrum_w/spectrum_wall_v10.linux-scalar-intel.xml.gz,
	  tests/spectrum_w/spectrum_wall_v10.xml.ini,
	  tests/t_ape_smear/t_ape_smear.linux-scalar-intel.xml,
	  tests/t_asqtad_prop/DATA, tests/t_asqtad_prop/DATA_v2,
	  tests/t_asqtad_prop/DISC_DATA_v2,
	  tests/t_asqtad_prop/DISC_XMLDAT.reference,
	  tests/t_asqtad_prop/INPUT_t_propagator_fuzz_s,
	  tests/t_asqtad_prop/XMLDAT.reference,
	  tests/t_asqtad_prop/t_disc_loop_s.xml,
	  tests/t_asqtad_prop/t_disc_loop_s_METRIC.xml,
	  tests/t_asqtad_prop/t_nersc.cfg,
	  tests/t_asqtad_prop/t_propagator_fuzz_s.xml,
	  tests/t_asqtad_prop/t_propagator_fuzz_s_METRIC.xml,
	  tests/t_asqtad_prop/t_propagator_s.xml,
	  tests/t_asqtad_prop/t_propagator_s_METRIC.xml,
	  tests/t_dwf4d/t_dwf4d.xml.ini,
	  tests/t_dwf4d/t_dwf4d_ovdwf_v1.linux-scalar-intel.xml,
	  tests/t_dwf4d/t_dwf4d_ovdwf_v1.xml.ini,
	  tests/t_g5eps_bj/t_g5eps_bj.xml.ini,
	  tests/t_gmresr/t_rel_gmresr.xml.ini,
	  tests/t_hamiltonian/t_hamiltonian.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_1flav_wilson.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_contfrac.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.xml.ini,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.xml.ini,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.xml.ini,
	  tests/t_lwldslash_sse/input.xml,
	  tests/t_lwldslash_sse/t_lwldslash_array_input.xml,
	  tests/t_msumr/t_msumr.xml.ini,
	  tests/t_msumr/t_msumr.xml.linux-scalar-intel,
	  tests/t_ov_pbp/DATA, tests/t_ov_pbp/README,
	  tests/t_ovlap5d_bj/DATA.ini,
	  tests/t_ovlap5d_bj/t_ovlap5d.xml.out, tests/t_ovlap_bj/DATA,
	  tests/t_ovlap_bj/eigenvector.xml,
	  tests/t_ovlap_bj/eigenvector_000,
	  tests/t_ovlap_bj/eigenvector_001,
	  tests/t_ovlap_bj/eigenvector_002,
	  tests/t_ovlap_bj/eigenvector_003,
	  tests/t_ovlap_bj/eigenvector_004,
	  tests/t_ovlap_bj/eigenvector_005,
	  tests/t_ovlap_bj/eigenvector_006,
	  tests/t_ovlap_bj/eigenvector_007,
	  tests/t_ovlap_bj/eigenvector_008,
	  tests/t_ovlap_bj/eigenvector_009,
	  tests/t_ovlap_bj/eigenvector_010,
	  tests/t_ovlap_bj/eigenvector_011, tests/t_ovlap_bj/t_ovlap.xml,
	  tests/t_prec_contfrac/t_prec_contfrac.xml.ini,
	  tests/t_precact/t_prec_nef.xml.ini,
	  tests/t_precact/t_precact.prec_contfrac.xml.ini,
	  tests/t_precact/t_precact.prec_dwf.xml.ini,
	  tests/t_precact/t_precact.prec_ht_contfrac.xml.ini,
	  tests/t_precact/t_precact.prec_zolo_nef.xml.ini,
	  tests/t_ritz/DATA_rest_read, tests/t_ritz/README,
	  tests/t_ritz/t_ritz.xml.in, tests/t_ritz/t_ritz.xml.out,
	  tests/t_ritz/t_ritz5d_KS.xml.in,
	  tests/t_ritz/t_ritz5d_KS.xml.out, tests/t_ritz/t_ritz_KS.xml.in,
	  tests/t_ritz/t_ritz_KS.xml.out, tests/t_sumr/t_sumr.xml.ini,
	  tests/t_unit_tests/t_lower_tests.xml,
	  tests/t_unit_tests/t_lower_tests_METRIC.xml,
	  tests/unprec_twoflav_wilson_monomial/t_unprec_twoflav_wilson_monomial.xml.ini,
	  tests/wallformfac/make_source_pt_v5.linux-scalar-intel.xml,
	  tests/wallformfac/make_source_wl_v5.linux-scalar-intel.xml,
	  tests/wallformfac/prop_pt_v6.linux-scalar-intel.xml,
	  tests/wallformfac/prop_wl_v6.linux-scalar-intel.xml,
	  tests/wallformfac/spectrum_pt_v10.linux-scalar-intel.xml,
	  tests/wallformfac/spectrum_wl_v10.linux-scalar-intel.xml,
	  tests/wallformfac/test_wallformfac_v1.csh,
	  tests/wallformfac/test_wallformfac_v2.csh,
	  tests/wallformfac/test_wallformfac_v3.csh,
	  tests/wallformfac/test_wallformfac_zolo4d_v1.csh,
	  tests/wallformfac/wallformfac_v1.linux-scalar-intel.xml: Moved to
	  version 2.0

2005-09-25 16:57  tag chroma1-24-1

2005-09-25 16:57  tag pre-chroma2-0-0

2005-09-25 16:57  edwards

	* NEWS: Info on 1.24.1

2005-09-25 16:55  edwards

	* configure: Induced changes.

2005-09-25 16:51  edwards

	* aclocal.m4: Induced changes.

2005-09-25 16:50  edwards

	* mainprogs/tests/Makefile.am: Added t_dwflocality to make checks.

2005-09-25 16:43  edwards

	* mainprogs/main/: apesmear.cc, bar3ptfn.cc, hadspec.cc,
	  hypsmear.cc, hypsmear3d.cc, hypsmear4d.cc, make_source.cc,
	  mres.cc, multi_propagator.cc, propagator.cc, qqq_w.cc,
	  seqsource.cc, sink_smearing.cc, spectrum_w.cc, stoutsmear.cc:
	  Removed wrappers over inline measurements.

2005-09-25 16:42  edwards

	* mainprogs/main/stoutsmear.cc: Small changes.

2005-09-25 16:41  edwards

	* mainprogs/main/Makefile.am: Removed codes that were wrappers over
	  inline measurements.

2005-09-25 16:41  edwards

	* lib/meas/inline/: hadron/inline_bar3ptfn_w.cc,
	  hadron/inline_bar3ptfn_w.h, hadron/inline_building_blocks_w.cc,
	  hadron/inline_building_blocks_w.h, hadron/inline_hadspec_w.cc,
	  hadron/inline_hadspec_w.h, hadron/inline_make_source_w.cc,
	  hadron/inline_make_source_w.h, hadron/inline_mres_w.cc,
	  hadron/inline_mres_w.h, hadron/inline_multi_propagator_w.cc,
	  hadron/inline_multi_propagator_w.h, hadron/inline_multipole_w.cc,
	  hadron/inline_multipole_w.h, hadron/inline_propagator_w.cc,
	  hadron/inline_propagator_w.h, hadron/inline_qpropqio_w.cc,
	  hadron/inline_qqbar_w.cc, hadron/inline_qqbar_w.h,
	  hadron/inline_qqq_w.cc, hadron/inline_qqq_w.h,
	  hadron/inline_seqsource_w.cc, hadron/inline_seqsource_w.h,
	  hadron/inline_sink_smear_w.cc, hadron/inline_sink_smear_w.h,
	  hadron/inline_spectrumOct_w.cc, hadron/inline_spectrumOct_w.h,
	  hadron/inline_spectrum_w.cc, hadron/inline_spectrum_w.h,
	  io/inline_gaussian_obj.cc, io/inline_gaussian_obj.h,
	  io/inline_io_aggregate.cc, io/qio_read_obj_funcmap.cc,
	  smear/inline_ape_smear.cc, smear/inline_ape_smear.h,
	  smear/inline_hyp_smear.cc, smear/inline_hyp_smear.h,
	  smear/inline_hyp_smear4d.cc, smear/inline_hyp_smear4d.h,
	  smear/inline_smear_aggregate.cc, smear/inline_stout_smear.cc,
	  smear/inline_stout_smear.h, smear/smear.h: Updated to use new
	  memory object mechanism.

2005-09-25 16:40  edwards

	* configure.ac: Changed to 2.0.beta

2005-09-25 16:38  edwards

	* lib/Makefile.am: Added new inlines.

2005-09-25 16:37  edwards

	* lib/named_obj.h: Updated dump().

2005-09-25 16:13  tag chroma1-23-0

2005-09-25 16:13  tag chroma1-23-1

2005-09-25 16:13  tag chroma1-23-10

2005-09-25 16:13  tag chroma1-23-11

2005-09-25 16:13  tag chroma1-23-2

2005-09-25 16:13  tag chroma1-23-3

2005-09-25 16:13  tag chroma1-23-4

2005-09-25 16:13  tag chroma1-23-5

2005-09-25 16:13  tag chroma1-23-6

2005-09-25 16:13  tag chroma1-23-7

2005-09-25 16:13  tag chroma1-23-8

2005-09-25 16:13  tag chroma1-23-9

2005-09-25 16:13  tag chroma1-24-0

2005-09-25 16:13  edwards

	* tests/chroma/: chroma_eigbnds.xml.ini,
	  chroma_make_source-bb.xml.ini, chroma_make_source-qqq.xml.ini,
	  chroma_simple.xml.ini, chroma_twisted_bc_test.xml.ini: Some
	  sample input files.

2005-09-25 16:06  edwards

	* tests/chroma/: hadron/building_blocks/bb-v2.ini.xml,
	  hadron/building_blocks/bb-v2.out.xml,
	  hadron/make_source/make_source-sh-v5.ini.xml,
	  hadron/make_source/make_source-sh-v5.out.xml,
	  hadron/mres/mres-v1.ini.xml, hadron/mres/mres-v1.out.xml,
	  hadron/propagator/prec_wilson-v7.ini.xml,
	  hadron/propagator/prec_wilson-v7.out.xml,
	  hadron/qqbar/qqbar-v4.ini.xml, hadron/qqbar/qqbar-v4.out.xml,
	  hadron/qqq/qqq-v4.ini.xml, hadron/qqq/qqq-v4.out.xml,
	  hadron/seqsource/seqsource-v2.ini.xml,
	  hadron/seqsource/seqsource-v2.out.xml,
	  hadron/sink_smear/sink_smearing-v4.ini.xml,
	  hadron/sink_smear/sink_smearing-v4.out.xml,
	  hadron/spectrum/spectrum-v12.ini.xml,
	  hadron/spectrum/spectrum-v12.out.xml,
	  hadron/spectrum/spectrum.dat.xml,
	  io/nersc_write_obj/nersc_write_obj.ini.xml,
	  io/nersc_write_obj/nersc_write_obj.out.xml,
	  io/qio_read_obj/qio_read_obj.ini.xml,
	  io/qio_read_obj/qio_read_obj.out.xml,
	  io/qio_write_obj/qio_write_obj.ini.xml,
	  io/qio_write_obj/qio_write_obj.out.xml,
	  io/szin_write_obj/szin_write_obj.ini.xml,
	  io/szin_write_obj/szin_write_obj.out.xml,
	  smear/ape_smear/ape_smear_v2.ini.xml,
	  smear/ape_smear/ape_smear_v2.out.xml,
	  smear/hyp_smear/hyp_smear_v4.ini.xml,
	  smear/hyp_smear/hyp_smear_v4.out.xml,
	  smear/stout_smear/stout_smear_v2.ini.xml,
	  smear/stout_smear/stout_smear_v2.out.xml: Input files.

2005-09-25 10:24  kostas

	* mainprogs/tests/t_dwflocality.cc: Added xml input

2005-09-24 17:14  edwards

	* lib/meas/inline/io/: inline_erase_obj.cc, inline_erase_obj.h,
	  inline_io_aggregate.cc, inline_list_obj.cc, inline_list_obj.h,
	  inline_nersc_write_obj.cc, inline_nersc_write_obj.h,
	  inline_qio_read_obj.cc, inline_qio_read_obj.h,
	  inline_qio_write_erase_obj.cc, inline_qio_write_erase_obj.h,
	  inline_qio_write_obj.cc, inline_qio_write_obj.h,
	  inline_read_obj.cc, inline_read_obj.h, inline_snarf_obj.cc,
	  inline_snarf_obj.h, inline_szin_write_obj.cc,
	  inline_szin_write_obj.h, inline_write_erase_obj.cc,
	  inline_write_erase_obj.h, inline_write_obj.cc,
	  inline_write_obj.h, qio_read_obj_funcmap.cc,
	  qio_read_obj_funcmap.h, qio_write_obj_funcmap.cc,
	  qio_write_obj_funcmap.h, readobj_funcmap.cc, readobj_funcmap.h,
	  szin_write_obj_funcmap.cc, szin_write_obj_funcmap.h,
	  writeobj_funcmap.cc, writeobj_funcmap.h: Reorgs and new files.

2005-09-24 16:55  edwards

	* mainprogs/main/chroma.cc: Improvements to error handling.

2005-09-23 16:58  edwards

	* aclocal.m4, configure: Induced changes.

2005-09-23 16:57  edwards

	* configure.ac: Changed to version 1.24.0

2005-09-23 16:56  edwards

	* NEWS: Info on 1.24.0 .

2005-09-23 13:37  edwards

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h: Put consts back into
	  barhqlq signatures.

2005-09-23 12:07  edwards

	* mainprogs/tests/t_dwflocality.cc: Fixed for new qpropT factory.

2005-09-23 00:53  edwards

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h: For some odd reason,
	  need to remove "const" qual from LaticePropagator in signatures.

2005-09-22 23:47  edwards

	* lib/funcmap.h: Added 6 param call.

2005-09-22 23:44  edwards

	* lib/init/: chroma_init.cc, chroma_init.h: Removed commented out
	  code.

2005-09-22 23:43  edwards

	* lib/: meas/inline/inline_aggregate.cc, Makefile.am, named_obj.h:
	  Added IO support.

2005-09-22 23:43  edwards

	* lib/meas/inline/io/: inline_erase_obj.cc, inline_erase_obj.h,
	  inline_io_aggregate.cc, inline_io_aggregate.h,
	  inline_read_obj.cc, inline_read_obj.h, inline_write_erase_obj.cc,
	  inline_write_erase_obj.h, inline_write_obj.cc,
	  inline_write_obj.h, io.h, named_objmap.h, readobj_funcmap.cc,
	  readobj_funcmap.h, writeobj_funcmap.cc, writeobj_funcmap.h: New
	  IO support.

2005-09-21 01:13  edwards

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h, baryon_w.cc,
	  baryon_w.h: Changed signatures of LatticePropagator to const
	  LatticePropagator.

2005-09-20 00:42  bjoo

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_w_pab.cc: lwldslash_w_pab and lwldslash_array_pab_w now
	  check for bad allocs to be thrown from the QDPAllocator. Request
	  slow mem if fast cannot be got. Can now run Roberts target size

2005-09-18 22:27  edwards

	* mainprogs/main/chroma.cc: Added START/END code.

2005-09-18 22:07  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc: Added timer
	  around inverter call.

2005-09-18 12:19  mcneile

	* install_scripts/LIVERPOOL/install_chroma.sh: I have fixed some
	  typos in the information written to the compilation log

2005-09-18 10:01  mcneile

	* install_scripts/LIVERPOOL/install_chroma.sh: I now check out a
	  tagged chroma ditsribution.

2005-09-18 09:28  tag LIVTAG_1

2005-09-18 09:28  mcneile

	* install_scripts/LIVERPOOL/install_chroma.sh: This is the first
	  version of a script to build a tagged library of chroma/qdp++

2005-09-17 23:58  edwards

	* lib/actions/ferm/linop/: lwldslash_base_w.cc, lwldslash_w_sse.cc:
	  Added START/END code.

2005-09-16 17:23  edwards

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_array_w.cc: Added START/END code.

2005-09-16 16:47  edwards

	* lib/chromabase.h: Put hook for memory debugging.

2005-09-13 13:29  edwards

	* lib/actions/ferm/linop/lwldslash_w_pab.cc: Added START_CODE and
	  END_CODE.

2005-09-13 12:17  edwards

	* NEWS: Info on 1.23.11

2005-09-12 15:52  mcneile

	* lib/Makefile.am: Another attempt to fix this

2005-09-12 14:51  mcneile

	* lib/Makefile.am: Added two missing header files for staggered
	  fermions.

2005-09-08 16:12  adamant

	* PBS/spectrum/scripts/smear_tune_submit.sh: This script works with
	  run_qqq_spectrum.sh   create_pbs.pl-template   parse_qqq.pl
	  parse_qs.pl

2005-09-08 16:11  adamant

	* PBS/spectrum/scripts/parse_qs.pl: This script works with
	  run_qqq_spectrum.sh	create_pbs.pl-template	 parse_qqq.pl
	  smear_tune_submit.sh

2005-09-08 16:10  adamant

	* PBS/spectrum/scripts/parse_qqq.pl: This script works with
	  run_qqq_spectrum.sh	create_pbs.pl-template	 parse_qs.pl
	  smear_tune_submit.sh

2005-09-08 16:08  adamant

	* PBS/spectrum/scripts/create_pbs.pl-template: This script works
	  with	 run_qqq_spectrum.sh   parse_qqq.pl   parse_qs.pl
	  smear_tune_submit.sh

2005-09-08 16:07  adamant

	* PBS/spectrum/scripts/run_qqq_spectrum.sh: This script works along
	  with:   create_pbs.pl-template   parse_qqq.pl   parse_qs.pl
	  smear_tune_submit.sh

2005-09-08 12:57  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: I have add the new
	  inline staggered namespace.

2005-09-08 12:51  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: I have added a new
	  namespace for staggerd fermions.

2005-09-08 12:50  mcneile

	* lib/meas/inline/hadron_s/inline_hadron_aggregate.h: I have
	  introduced a new staggered namespace.

2005-09-08 12:09  adamant

	* lib/meas/smear/stout_smear.cc: Restored "n != j_decay" test.

2005-09-06 12:45  edwards

	* NEWS: Info on 1.23.10

2005-09-06 10:26  bjoo

	* lib/actions/ferm/fermbcs/: twisted_fermbc_w.cc,
	  twisted_fermbc_w.h: Added twisted BC code. Added test files.
	  Checked against Soton code. Looks OK

2005-09-06 06:59  bjoo

	* lib/: Makefile.am, actions/ferm/fermbcs/fermbcs.h,
	  actions/ferm/fermbcs/fermbcs_w.cc,
	  actions/ferm/fermbcs/simple_fermbc.cc,
	  actions/ferm/fermbcs/twisted_fermbc_w.cc,
	  actions/ferm/fermbcs/twisted_fermbc_w.h: Added shell code for
	  twisted boundaries

2005-09-05 13:40  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have updated the way the type
	  of shift operator is passed to the meson operators. This now
	  compiles.

2005-09-03 10:04  mcneile

	* TODO: I have added some TODOs  for the staggered measurement
	  code.

2005-09-03 09:47  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have added calls to the new
	  system for chosing the type of shift in displacment

2005-09-03 09:42  mcneile

	* lib/meas/inline/hadron_s/: util_compute_meson_s.cc,
	  util_compute_singlet_ps.cc: I have removed the nasty way of
	  chosing the type of shift operator

2005-09-03 09:38  mcneile

	* lib/meas/hadron/: hadron_corr_s.h, pion_local_s.h, pion_sing_s.h,
	  pions_s.h, stag_scalars_s.h, vector_meson_s.h: I have removed the
	  nast way of loading in the type of shift.

2005-09-03 08:32  mcneile

	* lib/meas/hadron/: ks_local_loops.cc, ks_local_loops.h: I have
	  added code to fuzz the loops at the sink.

2005-09-03 08:26  mcneile

	* tests/spectrum_s/spectrum_s.xml: I have added a flag for fuzzed
	  disconnected loops

2005-09-03 08:23  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.h: I have added a flag
	  to control whether the fuzzed disconnected loops are computed.

2005-09-03 08:22  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: I have added a
	  call to the code that computes fuzzed disconnected loops

2005-09-01 01:04  edwards

	* NEWS: Info on 1.23.9

2005-08-31 01:49  edwards

	* lib/: Makefile.am, io/barcomp_io.cc, io/barcomp_io.h, io/io_w.h,
	  io/qprop_io.cc, io/qprop_io.h, meas/hadron/barcomp_w.cc,
	  meas/hadron/barcomp_w.h, meas/hadron/hadron_w.h,
	  meas/hadron/mescomp_w.cc, meas/hadron/mescomp_w.h,
	  meas/inline/hadron/hadron.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_qqbar_w.cc,
	  meas/inline/hadron/inline_qqbar_w.h,
	  meas/inline/hadron/inline_qqq_w.cc: Moved barcomp_io into
	  barcomp_w routines. Added QQbarMescomp structs and
	  reader/writers. Added qqbar inline measurements.

2005-08-31 00:32  edwards

	* lib/meas/hadron/: mescomp_w.cc, mescomp_w.h: Meson correlator
	  contractor.

2005-08-31 00:25  edwards

	* lib/Makefile.am: Added mescomp_w.{h,cc}

2005-08-27 15:31  mcneile

	* lib/Makefile.am: I have added new helper routines for the inline
	  staggered code.

2005-08-27 15:23  mcneile

	* lib/meas/hadron/: pion_local_s.cc, pion_local_s.h: Local
	  staggered meson operators. Suitable for use in a variational
	  analysis.

2005-08-27 15:21  mcneile

	* lib/meas/hadron/pion_sing_s.h: Minor change to get the code to
	  work with the inline code.

2005-08-27 15:19  mcneile

	* lib/meas/hadron/hadron_corr_s.h: I have made some minor changes
	  to get the cofe to work with the inline stuff.

2005-08-27 15:16  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h: I have added code to compute pions via
	  variational fuzzing.

2005-08-27 15:13  mcneile

	* lib/meas/inline/hadron_s/: util_compute_meson_s.cc,
	  util_compute_meson_s.h, util_compute_singlet_ps.cc: Functions to
	  compute staggerted meson correlators.

2005-08-27 15:09  mcneile

	* lib/io/enum_io/: enum_stochsrc_io.cc, enum_stochsrc_io.h: enums
	  for different types of stochastic sources.

2005-08-27 15:06  mcneile

	* tests/spectrum_s/spectrum_s.xml: I have added new hooks for new
	  code.

2005-08-27 14:19  edwards

	* NEWS: Info on 1.23.8

2005-08-27 13:59  edwards

	* lib/io/qprop_io.cc: Added backward v4 support.

2005-08-27 07:38  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h, util_baryon_s.cc: I have added variational
	  baryon code.

2005-08-27 07:34  mcneile

	* lib/meas/hadron/enum_loops_s.h: Some names for stochastic
	  sources.

2005-08-27 07:31  mcneile

	* lib/meas/hadron/scalar_loops_s.h: I made some minor changes to
	  get the code to work with the inline code.

2005-08-27 07:30  mcneile

	* lib/meas/hadron/: loops_s.h, pseudoscalar_loops_s.h: I have made
	  minor modifications to get the code to work with the inline code.

2005-08-27 07:27  mcneile

	* lib/meas/hadron/: ks_local_loops.cc, ks_local_loops.h: I have
	  made some slight modifications so that the code works with the
	  inline code.

2005-08-27 07:23  mcneile

	* tests/spectrum_s/spectrum_s.xml: This data files works with the
	  new code. I have added additional options.

2005-08-27 07:20  mcneile

	* mainprogs/main/spectrum_s.cc: I have added code to do a random
	  gauge transoform on the gauge config

2005-08-26 09:29  mcneile

	* tests/spectrum_s/spectrum_s.xml: This is the input file for
	  staggered spectrum file spectrum_s

2005-08-26 06:28  mcneile

	* mainprogs/main/DATA_s: I am moving this file to the tests
	  directory (the correct place for it)

2005-08-25 12:41  mcneile

	* lib/Makefile.am: I have added utility routines to compute quark
	  propagators and baryon correlators.

2005-08-25 12:38  mcneile

	* lib/meas/inline/hadron_s/: util_baryon_s.cc,
	  util_compute_quark_prop_s.cc, util_compute_quark_prop_s.h: Some
	  utility routines to compute quark and baryon correlators.

2005-08-25 12:37  mcneile

	* lib/meas/inline/hadron_s/inline_spectrum_s.cc: I have added
	  application code to compute the local baryon correlator.

2005-08-25 10:55  edwards

	* lib/actions/ferm/qprop/quarkprop4_w.cc: Added some diagnostic
	  output.

2005-08-24 13:14  edwards

	* lib/meas/inline/hadron/inline_propagator_w.cc: Added timing
	  around quarkProp call.

2005-08-24 12:39  mcneile

	* lib/meas/inline/hadron_s/: inline_spectrum_s.cc,
	  inline_spectrum_s.h: This filess are now looking more staggered
	  than before.

2005-08-24 09:41  zbigniew

	* lib/actions/ferm/linop/naik_term_s.cc: Removed the printing of
	  c_3 in Triple_Links because it's getting really annoying.

2005-08-23 23:53  edwards

	* lib/meas/inline/hadron/inline_seqsource_w.cc: Added timing of
	  hadseqsrc.

2005-08-23 23:13  edwards

	* mainprogs/main/chroma.cc: Added timings around IO.

2005-08-23 23:12  edwards

	* lib/meas/inline/hadron/: inline_bar3ptfn_w.cc,
	  inline_building_blocks_w.cc, inline_make_source_w.cc,
	  inline_propagator_w.cc, inline_seqsource_w.cc,
	  inline_spectrum_w.cc: Added timings around IO routines.

2005-08-23 23:10  edwards

	* NEWS: Info on 1.23.7

2005-08-23 18:30  edwards

	* NEWS: Info on 1.23.6

2005-08-23 15:36  edwards

	* mainprogs/main/cfgtransf.cc: Remove MILCGaugeInit

2005-08-23 15:35  edwards

	* lib/io/: milc_io.cc, milc_io.h, readmilc.cc: Moved MILCGaugeInit
	  to MILCGauge_t constructor.

2005-08-23 15:26  edwards

	* mainprogs/main/: cfgtransf.cc, qqq_w.cc, sink_smearing.cc: Remove
	  archiveGaugeInit.

2005-08-23 15:24  edwards

	* lib/io/szin_io.h: Added C++ emacs line

2005-08-23 13:35  mcneile

	* lib/Makefile.am: I have added files for the inline staggered
	  code.

2005-08-23 13:29  mcneile

	* lib/meas/inline/hadron_s/: hadron_s.h, inline_hadron_aggregate.h,
	  inline_spectrum_s.cc, inline_spectrum_s.h: Start of the inline
	  code for staggered fermions. At the moment it looks very similar
	  to the Wilosn/overlap code.

2005-08-23 13:27  mcneile

	* lib/meas/inline/inline.h: Added header for inline staggered code.

2005-08-23 13:23  mcneile

	* mainprogs/main/: DATA_s, spectrum_s.cc: This is a top level main
	  program for staggered correlator analysis.

2005-08-23 13:22  mcneile

	* mainprogs/main/Makefile.am: I have added a target for the
	  staggered code.

2005-08-23 08:43  bjoo

	* mainprogs/main/cfgtransf.cc: Commented out call to
	  archivGaugeInit in cfgtransf.cc since it doesnt exist either in
	  qdp or chroma

2005-08-19 01:49  edwards

	* NEWS: Info on 1.23.5

2005-08-19 01:47  edwards

	* tests/hypsmear/chroma_hypsmear4d.xml.ini: Chroma hypsmear4d input
	  file.

2005-08-19 01:46  edwards

	* lib/meas/inline/smear/: inline_hyp_smear4d.cc,
	  inline_hyp_smear4d.h: Removed hyp_type. Changed volfmt to
	  hyp_volfmt.

2005-08-19 01:46  edwards

	* lib/meas/inline/inline_aggregate.cc: Added missing smear
	  aggregrate.

2005-08-19 01:32  edwards

	* lib/meas/inline/smear/: inline_hyp_smear4d.cc,
	  inline_hyp_smear4d.h, inline_smear_aggregate.cc, smear.h: Added
	  inline_hyp_smear4d

2005-08-19 01:31  edwards

	* lib/Makefile.am: Added inline_hyp_smear4d.{h,cc}

2005-08-18 15:28  edwards

	* docs/notes/manual.tex: Removed manual from here.

2005-08-18 15:27  edwards

	* docs/notes/: N_N_5d_ov.tex, anisoHQ.tex, baryon_3pt.tex,
	  chiral.tex, deltanotes.tex, force.tex, gamma_conventions.tex,
	  hmc.tex, manual.tex, multicg.tex, o3_to_u1.tex, overlap_5dim.tex,
	  overlap_proj_hmc.tex, partfrac5D.tex, pinotes_v2.tex,
	  rossi_basis_v2.tex, trunc_ov_5d.tex: Various notes.

2005-08-18 12:29  edwards

	* docs/tutorial.html: A link to Balint's tutorial.

2005-08-10 20:25  zbigniew

	* docs/chromadoc: Added cross-reference to QDP

2005-07-29 10:29  edwards

	* NEWS: Info on 1.23.4

2005-07-29 10:28  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Added gamma insertion

2005-07-27 12:35  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Added checksum.

2005-07-27 12:23  edwards

	* lib/meas/: hadron/BuildingBlocks_w.cc, hadron/BuildingBlocks_w.h,
	  inline/hadron/inline_building_blocks_w.cc,
	  inline/hadron/inline_building_blocks_w.h: New building blocks
	  version.

2005-07-27 12:23  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added getter for momentum
	  offset

2005-07-25 14:08  edwards

	* lib/meas/inline/hadron/inline_seqsource_w.cc: Print out so
	  diagnostics.

2005-07-23 09:34  edwards

	* lib/update/heatbath/su2_hb_update.cc: Changed cerr to QDPIO::cerr

2005-07-21 12:58  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h,
	  seqsrc_funcmap_w.cc: Added a NuclPatchMixedNR.

2005-07-20 21:48  edwards

	* NEWS: Info on 1.23.3

2005-07-20 08:04  bjoo

	* lib/meas/hadron/barseqsrc_w.cc: Chroma now needs qdp-1-14-4 to
	  work, barseqsrc_w.cc has had all instances of quarkContract12
	  changed to transposeSpin(quarkContract12())

2005-07-19 18:33  edwards

	* NEWS: Info on 1.23.2

2005-07-19 18:27  edwards

	* mainprogs/main/chroma.cc: Added initialization of RNG seed. It
	  carries a default value.

2005-07-15 12:48  mcneile

	* lib/meas/hadron/baryon_s.h: Added a protoptype for the correlator
	  that is consistent with one of the MILC operators.

2005-07-15 12:42  mcneile

	* lib/meas/hadron/baryon_s.cc: I have corrected the code that
	  computes the baryon correlator with fuzzed staggered quarks. This
	  code could be speeded up, but on a 20**3x64 lattice, it only took
	  30 seconds for oner call, so I can't be bothered.

2005-07-15 12:37  mcneile

	* mainprogs/tests/t_propagator_fuzz_baryon_s.cc: I have added
	  timing code to measure how long it takes to compute the
	  proopagtor.

2005-07-15 07:06  bjoo

	* lib/Makefile.am, lib/fermact.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/linop/lg5Rherm_w.h,
	  lib/actions/ferm/linop/linop_w.h, lib/io/qprop_io.cc,
	  lib/meas/inline/hadron/inline_hadron_aggregate.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.cc,
	  lib/meas/inline/hadron/inline_multi_propagator_w.h,
	  mainprogs/tests/t_read_eigen.cc, mainprogs/tests/t_ritz_KS.cc:
	  added inline_multi_propagator measurement for Keh-Fei -- first
	  variant with no projection. Changed gamma5HermLinOp to
	  hermitianLinOp throughout the fermacts. Added UNPREC DWF
	  specialisation of hermitian linOp using new class g5RHerm

2005-07-13 01:07  edwards

	* NEWS: Info on 1.23.1

2005-07-07 14:20  edwards

	* mainprogs/main/hmc.cc: A little more descriptive on errors.

2005-07-07 09:12  bjoo

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_w_pab.cc: Latest and greatest. BAGEL lwldslash-es now
	  use QDP allocator, so, no ifdefs there. Also some more memory
	  hinting etc here and there

2005-07-06 05:12  bjoo

	* lib/: linearop.h, actions/ferm/linop/lmdagm.h,
	  actions/ferm/invert/minvcg_array.cc: QCDOC Mods on a few files

2005-07-05 18:18  edwards

	* mainprogs/main/purgaug.cc: Bug fix.

2005-07-05 18:09  edwards

	* mainprogs/main/purgaug.cc: Another change.

2005-07-05 18:08  edwards

	* mainprogs/main/purgaug.cc: Changed udate num on output.

2005-07-05 18:03  edwards

	* mainprogs/main/purgaug.cc: Changed output file name format
	  conventions.

2005-07-05 17:33  edwards

	* install_scripts/cygwin/config_chroma_scalar.sh: Changed
	  enable-gmp to with-gmp=path

2005-07-05 17:28  edwards

	* install_scripts/jlab/: config_chroma_parscalar-gigE.sh,
	  config_chroma_parscalar-gm.sh, config_chroma_parscalar-single.sh,
	  config_chroma_scalar.sh: Changed enable-gmp to with-gmp=/usr

2005-07-04 17:06  edwards

	* lib/meas/hadron/ks_local_loops.cc: Changed Seed to QDP::Seed .
	  Not sure why this is needed. Must be some type floating around
	  with that name. Also removed some unneeded includes.

2005-07-03 12:15  edwards

	* mainprogs/main/hadspec.cc: Intended as replacement for
	  spectrum_w.cc . However, would like to switch to binary form for
	  spectrum.

2005-07-03 12:14  edwards

	* mainprogs/main/purgaug.cc: Switched to mciter.

2005-07-03 12:10  edwards

	* lib/update/heatbath/: hb_params.h, heatbath.h, mciter.cc,
	  mciter.h, su3_hb_sweep.cc, su3_hb_sweep.h, su3hb.cc, su3over.cc,
	  u_staple.cc, u_staple.h: Added overrelaxation. Switched to
	  mciter.

2005-07-03 12:09  edwards

	* lib/Makefile.am: Added heatbath codes.

2005-07-03 12:06  edwards

	* tests/purgaug/w_plaq.xsl: XSLT script to yank out plaq.

2005-07-03 12:06  edwards

	* tests/purgaug/purgaug.xml.ini: Changed frequency of wilson_loops

2005-06-30 15:40  mcneile

	* mainprogs/tests/t_propagator_fuzz_baryon_s.cc: This is now does
	  some variationmal fuzzing on the single staggered operator we
	  have in the code.

2005-06-30 14:44  mcneile

	* mainprogs/tests/t_propagator_fuzz_baryon_s.cc: This is now looks
	  as though it is doing what I want.  After the lattice conference
	  I will move some of the functions into the generic library.

2005-06-30 12:55  edwards

	* configure: Induced changes.

2005-06-30 12:55  edwards

	* aclocal.m4: induced changes.

2005-06-30 12:46  edwards

	* configure.ac: Changed to 1.23.0

2005-06-30 12:46  edwards

	* NEWS: Info on 1.23.0

2005-06-30 11:37  mcneile

	* mainprogs/tests/Makefile.am: This main program is develop the
	  variational fuzzing of baryon operators.

2005-06-30 11:35  mcneile

	* mainprogs/tests/t_propagator_fuzz_baryon_s.cc: This is a test
	  code for the variational fuzzing of baryons.

2005-06-29 15:35  edwards

	* mainprogs/tests/t_su3.cc: Updated for new HB struct.

2005-06-29 15:27  edwards

	* lib/update/heatbath/hb_params.h: Turned off public/private.

2005-06-29 15:26  edwards

	* lib/update/heatbath/heatbath.h: Added update stuff.

2005-06-29 15:24  edwards

	* lib/Makefile.am: Added su3over.cc and su2 update stuff.

2005-06-29 15:22  edwards

	* mainprogs/main/purgaug.cc: Pure gauge driver.

2005-06-29 15:22  edwards

	* mainprogs/main/Makefile.am: Added purgaug.cc

2005-06-29 15:21  edwards

	* tests/purgaug/purgaug.xml.ini: Sample input

2005-06-29 12:58  bjoo

	* chroma-config.in, configure, configure.ac, config/config.guess,
	  config/config.sub, mainprogs/tests/t_lwldslash_pab.cc: removed
	  AC_CANONICAL_HOST from configure.ac as it screwed up BGL builds
	  with the host type being unrecognised by config.sub. Patched
	  chroma-config.in to not remove dublicate libs

2005-06-29 08:45  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: I have factored some of
	  the routines so that a production code can start to be written.

2005-06-29 08:43  mcneile

	* lib/meas/hadron/: baryon_s.cc, baryon_s.h: I have added a new
	  routine for smeared nucleon operators.

2005-06-28 16:14  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: I have cleaned this
	  routine up. The various options have better flags on them

2005-06-28 12:27  mcneile

	* lib/meas/hadron/: loops_s.h, pseudoscalar_loops_s.cc,
	  scalar_loops_s.cc: The covariant shift routines have been added
	  to the staggered disconnected diagram code.

	  Most of the options in loops_s.h are commented out.

2005-06-28 12:25  mcneile

	* lib/meas/hadron/hadron_s.h: I have added the include file for the
	  new loop wrapper.

2005-06-28 11:28  tag chroma1-22-3

2005-06-28 11:28  bjoo

	* lib/: linearop.h, actions/ferm/invert/invcg1.cc,
	  actions/ferm/invert/invcg1_array.cc,
	  actions/ferm/invert/invcg2.cc,
	  actions/ferm/invert/invcg2_array.cc,
	  actions/ferm/linop/asqtad_mdagm_s.cc,
	  actions/ferm/linop/lDeltaLs_w.cc, actions/ferm/linop/lmdagm.h,
	  actions/ferm/linop/prec_clover_linop_w.cc,
	  actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  actions/ferm/linop/prec_dwf_linop_array_w.h,
	  actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  actions/ferm/linop/prec_nef_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_linop_array_w.h,
	  actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  actions/ferm/linop/prec_parwilson_linop_w.cc,
	  actions/ferm/linop/prec_wilson_linop_w.cc,
	  actions/ferm/linop/unprec_dwf4d_linop_w.cc,
	  actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  actions/ferm/linop/unprec_wilson_linop_w.cc: Systematically
	  peppered moveToFastMemoryHints in cg inverters and linops
	  including linearop.h

2005-06-27 18:21  bjoo

	* lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  mainprogs/tests/t_precdwf.cc: DWF Now runs very very fast

2005-06-27 16:22  mcneile

	* lib/meas/hadron/pseudoscalar_loops_s.h: The 3 link and 4 link
	  pseodoscalar operators were mislabbeled in the XML tags. This bug
	  has now been fixed. The 4 link operator has a good signal, but
	  the 3 link one does not.

	  Even XML can not help the dyslexic.

2005-06-27 16:12  mcneile

	* lib/meas/hadron/: ks_local_loops.cc, loops_s.h,
	  pseudoscalar_loops_s.h, scalar_loops_s.h: The infrastructure for
	  switching between gauge invariant and gauge non-invariant
	  operators has been improved.

2005-06-27 14:06  bjoo

	* lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_factory.h,
	  mainprogs/main/chroma.cc: Speeded up the prec_partfrac some and
	  put flopcounting on

2005-06-27 11:58  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have now completly factored
	  the calculation of the local stagered loops into a seperate
	  function.

2005-06-27 11:55  mcneile

	* lib/Makefile.am: I have added the wrapper code for the staggered
	  loops.

2005-06-27 11:54  mcneile

	* lib/meas/hadron/: ks_local_loops.cc, ks_local_loops.h: Wrapper
	  function to compute staggerd disconnected loops.  This does
	  everything and writes stuff to XML.

	  This was originally code that was in the test program t_discon

	  I have fixed the problem where Z2 and GAUSSAian noise were
	  mislabbeled.

	  This is all a bit dumb, but is a first step to the wonderful
	  world of inline measurements.

2005-06-27 09:56  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I am starting to package the
	  staggered codes into seperate measurements.

2005-06-23 06:27  bjoo

	* lib/actions/ferm/invert/invcg2_array.cc: Adapted flopcounter
	  interface in invcg2_array.cc

2005-06-21 11:27  bjoo

	* lib/actions/ferm/fermacts/: ovlap_partfrac4d_fermact_w.cc,
	  ovlap_partfrac4d_fermact_w.h: Moved approx min and approx max
	  into the fermact in ovlap_partfrac_4d

2005-06-20 07:18  bjoo

	* lib/actions/ferm/linop/: prec_ht_contfrac5d_linop_array_w.cc,
	  prec_ht_contfrac5d_linop_array_w.h: Changed prec_ht_contfrac
	  linop to be more g5 blas savvy

2005-06-20 07:14  bjoo

	* lib/actions/ferm/invert/invcg2_array.cc: [no log message]

2005-06-17 11:17  bjoo

	* lib/linearop.h, lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  mainprogs/tests/t_preccfz.cc, mainprogs/tests/t_precdwf.cc: Code
	  works. t_precdwf and t_preccfz work. preccfz_base_array and
	  preccfz_pv now use the vector dslash-es

2005-06-16 08:03  bjoo

	* lib/: linearop.h, actions/ferm/invert/invcg2_array.cc,
	  actions/ferm/linop/prec_dwf_linop_array_w.h: Instrumented invcg

2005-06-16 08:03  bjoo

	* configure: Instrumented invcg finally the configure script

2005-06-16 08:02  bjoo

	* aclocal.m4: Instrumented invcg now aclocal.m4

2005-06-15 10:33  bjoo

	* other_libs/intel_sse_wilson_dslash/include/: sse32.h, sse64.h:
	  Changed unsigned ints to unsigned longs where pointer arithmetic
	  is involved. This eases life on our opteron cluster and shouldnt
	  hurt the normal 32 bit pentiums

2005-06-15 10:13  bjoo

	* lib/Makefile.am: Someone forgot to add some new header files to
	  the makefile include list. This broke working with an installed
	  library. Now fixed

2005-06-15 07:52  bjoo

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_w_pab.cc: Fixed a typo in invocation of qalloc

2005-06-15 07:15  bjoo

	* lib/Makefile.am: Appended GMP_CXXFLAGS to lib/Makefile.am

2005-06-15 04:54  bjoo

	* configure, configure.ac, mainprogs/tests/t_precdwf.cc: Fixed a
	  typo in configure.ac

2005-06-14 11:34  bjoo

	* lib/actions/ferm/linop/: lwldslash_array_pab_w.cc,
	  lwldslash_array_pab_w.h, lwldslash_w_pab.cc, lwldslash_w_pab.h:
	  lwldslash_pab qalloc hack

2005-06-14 10:11  bjoo

	* NEWS, acinclude.m4, chroma-config.in, configure, configure.ac,
	  lib/Makefile.am, lib/chroma_config_internal.h.in,
	  mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am: Fixed
	  build system so we dont have to pass all those nasty cxxflags...
	  Untested on QCDOC yet

2005-06-11 00:24  edwards

	* lib/meas/inline/hadron/: inline_building_blocks_w.cc,
	  inline_building_blocks_w.h: Added alternative xml_file  writing.

2005-06-10 22:13  edwards

	* lib/meas/inline/hadron/: inline_spectrum_w.cc,
	  inline_spectrum_w.h: Yuk, added link smearing to spectrum.

2005-06-10 21:43  edwards

	* lib/: Makefile.am, meas/hadron/barhqlq_w.cc,
	  meas/inline/hadron/hadron.h,
	  meas/inline/hadron/inline_hadron_aggregate.cc,
	  meas/inline/hadron/inline_hadspec_w.cc,
	  meas/inline/hadron/inline_hadspec_w.h: Added inline_hadspec

2005-06-08 09:42  dgr

	* PBS/spectrum/scripts/run_qqq_spectrum.sh: Corrected bug

2005-06-08 09:08  bjoo

	* tests/t_lwldslash_sse/t_lwldslash_array_input.xml: Input file for
	  t_lwldslash_array

2005-06-08 08:28  bjoo

	* mainprogs/tests/t_lwldslash_array.cc: added extra test

2005-06-08 08:09  bjoo

	* lib/Makefile.am, lib/actions/ferm/linop/dslash_array_w.h,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.cc,
	  lib/actions/ferm/linop/lwldslash_array_pab_w.h,
	  lib/actions/ferm/linop/lwldslash_base_array_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.h,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_lwldslash_array.cc: Added PAB vector Dslash

2005-06-08 05:35  bjoo

	* configure, configure.ac, tests/hmc/hmc.prec_wilson.xml.ini: Added
	  the AR thingie to configure.ac. Rebuilt Makefile.ins

2005-06-07 15:36  edwards

	* lib/actions/ferm/linop/: lwldslash_array_sse_w.cc,
	  lwldslash_array_sse_w.h, lwldslash_array_w.cc,
	  lwldslash_array_w.h, lwldslash_base_array_w.h: Added equiv of
	  LF<-dirac(LF) funcs.

2005-06-07 15:36  edwards

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.h,
	  prec_dwf_linop_array_w.cc: Switched to using a WilsonDslashArray

2005-06-05 23:47  edwards

	* lib/actions/ferm/linop/: lwldslash_array_sse_w.cc,
	  lwldslash_array_sse_w.h, lwldslash_array_w.cc,
	  lwldslash_array_w.h, lwldslash_base_array_w.cc,
	  lwldslash_base_array_w.h: Array versions.

2005-06-05 23:46  edwards

	* lib/actions/ferm/linop/dslash_array_w.h: Wrapper for optimized
	  lwldslash array critters.

2005-06-05 23:46  edwards

	* lib/actions/ferm/linop/linop_w.h: Added dslash_array_w.h

2005-06-05 23:45  edwards

	* lib/Makefile.am: Added lwldslash_array stuff.

2005-06-04 17:01  edwards

	* tests/propagator/propagator_prec_dwf_v7.linux-scalar-intel.xml:
	  Updated output format.

2005-06-03 18:11  dgr

	* PBS/spectrum/scripts/: create_pbs.pl, run_complete_job.sh,
	  run_qqq_spectrum.sh: Added a perl script that now substitues
	  quark mass values etc.

2005-06-03 18:10  dgr

	* PBS/spectrum/bin/: parse_qqq.pl, parse_qs.pl: Updated to use some
	  of the new chroma formats

2005-05-30 21:44  edwards

	* lib/meas/inline/hadron/: inline_mres_w.cc,
	  inline_propagator_w.cc: Fixes. The check of 'if (stateInfo !=
	  "")' is problematic since the value may unfortunately be
	  different on every node.

2005-05-30 21:01  edwards

	* lib/io/readszin.cc: Changed from using QDP_error_exit to
	  QDPIO::cerr and abort.

2005-05-30 12:52  edwards

	* lib/meas/inline/hadron/: inline_mres_w.cc,
	  inline_propagator_w.cc: Fixed up printing of StateInfo. Make sure
	  no xml header tags are written.

2005-05-29 17:52  edwards

	* lib/meas/inline/hadron/inline_mres_w.cc: Dumb compile bug file of
	  xml_file

2005-05-29 17:49  edwards

	* lib/meas/inline/hadron/inline_mres_w.cc: Oops. Added missing read
	  of xml_file !

2005-05-29 14:34  edwards

	* lib/meas/inline/hadron/: inline_mres_w.cc, inline_mres_w.h:
	  Changed to now optionally take FermionAction from XML input.

2005-05-29 14:34  edwards

	* tests/m_res4d/mres4_tanh.xml.ini: Now works under mres.cc

2005-05-29 14:32  edwards

	* tests/m_res4d/mres4_zolo_nef.xml.ini: Changed to work under
	  mres.cc

2005-05-28 22:15  tag chroma1-22-2

2005-05-28 22:15  edwards

	* NEWS: Info on 1.22.2

2005-05-28 22:10  edwards

	* lib/update/molecdyn/monomial/:
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h: Made one-flavor codes support
	  one and three flavors as a special case of the now generic
	  fractional flavor.

2005-05-28 22:09  edwards

	* tests/hmc/hmc.prec_3flav_dwf.xml.ini: Three flavor input file.

2005-05-28 20:40  edwards

	* tests/hmc/hmc.prec_dwf.xml.ini: Lower number of updates.

2005-05-28 18:38  edwards

	* lib/Makefile.am: Renamed dwf_linop_base_array to
	  dwflike_linop_base_array

2005-05-28 18:37  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_array_w.cc,
	  fermacts/prec_dwf_fermact_array_w.h,
	  fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/prec_kno_fermact_array_w.cc,
	  fermacts/prec_kno_fermact_array_w.h,
	  fermacts/prec_nef_fermact_array_w.cc,
	  fermacts/prec_nef_fermact_array_w.h,
	  fermacts/prec_ovdwf_fermact_array_w.cc,
	  fermacts/prec_ovdwf_fermact_array_w.h,
	  fermacts/prec_zolo_nef_fermact_array_w.cc,
	  fermacts/prec_zolo_nef_fermact_array_w.h,
	  fermacts/unprec_dwf_fermact_array_w.cc,
	  fermacts/unprec_dwf_fermact_array_w.h,
	  fermacts/unprec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_nef_fermact_array_w.cc,
	  fermacts/unprec_nef_fermact_array_w.h,
	  fermacts/unprec_ovdwf_fermact_array_w.cc,
	  fermacts/unprec_ovdwf_fermact_array_w.h,
	  fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  fermacts/unprec_zolo_nef_fermact_array_w.h, linop/linop_w.h,
	  linop/prec_dwf_linop_array_w.h,
	  linop/prec_dwf_linop_base_array_w.h,
	  linop/prec_dwflike_linop_base_array_w.h,
	  linop/prec_nef_general_linop_array_w.h,
	  linop/prec_nef_linop_array_w.h, linop/prec_ovdwf_linop_array_w.h,
	  linop/unprec_dwf_linop_array_w.h,
	  linop/unprec_dwf_linop_base_array_w.h,
	  linop/unprec_dwflike_linop_base_array_w.h,
	  linop/unprec_nef_linop_array_w.h,
	  linop/unprec_ovdwf_linop_array_w.h: Renamed dwf_linop_base_array
	  to dwflike_linop_base_array to avoid confusions.

2005-05-27 18:40  edwards

	* install_scripts/jlab/: config_chroma_parscalar-gigE-double.sh,
	  config_chroma_parscalar-gigE.sh,
	  config_chroma_parscalar-gm-double.sh,
	  config_chroma_parscalar-gm.sh, config_chroma_parscalar-single.sh,
	  config_chroma_scalar.sh: Added  --enable-opt-cfz-linop  to
	  install scripts.

2005-05-27 18:13  tag chroma1-22-1

2005-05-27 18:13  edwards

	* NEWS: Info on 1.22.1

2005-05-27 18:12  tag chroma1-22-0

2005-05-27 18:12  edwards

	* NEWS: Infon on 1.22.0

2005-05-27 18:09  edwards

	* lib/Makefile.am: Added prec_ovlap_contfrac5d_linop_base_w.{h,cc}
	  . Removed prec_ovlap_contfrac5d_linop_w.cc .

2005-05-27 18:09  edwards

	* lib/actions/ferm/linop/: linop_w.h,
	  prec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  prec_ovlap_contfrac5d_linop_array_opt_w.h,
	  prec_ovlap_contfrac5d_linop_array_w.cc,
	  prec_ovlap_contfrac5d_linop_array_w.h,
	  prec_ovlap_contfrac5d_linop_base_array_w.cc,
	  prec_ovlap_contfrac5d_linop_base_array_w.h: Moved all
	  prec_ovlap_contfrac5d_linop stuff to a BASE version. Now the QDP
	  and Opt versions derive from it.

2005-05-27 14:44  edwards

	* aclocal.m4, configure: Induced changes.

2005-05-27 14:43  edwards

	* configure.ac: Added new build_cfz_linop flag. Changed to 1.22

2005-05-27 14:42  edwards

	* lib/chroma_config_internal.h.in: Added BUUILD_OPT_CFZ_LINOP

2005-05-27 14:41  edwards

	* lib/Makefile.am: Added contfrac5d opt code.

2005-05-27 14:41  edwards

	* mainprogs/tests/t_preccfz_opt.cc: Test CFZ linop

2005-05-27 14:40  edwards

	* mainprogs/tests/Makefile.am: Added t_preccfz_opt.cc

2005-05-27 14:39  edwards

	* lib/actions/ferm/linop/: linop_w.h, ovlap_contfrac5d_w.h,
	  prec_ovlap_contfrac5d_linop_array_opt_w.cc,
	  prec_ovlap_contfrac5d_linop_array_opt_w.h,
	  prec_ovlap_contfrac5d_linop_array_w.cc,
	  prec_ovlap_contfrac5d_linop_array_w.h: Added optimized
	  ovlap_contfrac5d codes.

2005-05-27 14:39  edwards

	*
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc:
	  Changed include of prec_ovlap_contfrac5d_linop to instead
	  ovlap_contfrac5d

2005-05-27 14:38  edwards

	*
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h:
	  Made init()  public

2005-05-27 14:37  tag chroma1-21-6

2005-05-27 14:37  edwards

	* NEWS: Info on 1.21.6

2005-05-27 14:36  edwards

	* lib/actions/ferm/linop/dslash_w.h: Added doxygen comments.

2005-05-27 12:30  edwards

	*
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc:
	  Minutae - changed include path of zolotarev.

2005-05-26 05:38  bjoo

	* lib/update/molecdyn/integrator/: abs_integrator.h,
	  lcm_pqp_leapfrog.cc, lcm_pqp_leapfrog.h: Integrator convention
	  changed for leapfrog. Now specify n_steps rather than dt

2005-05-26 05:25  bjoo

	* tests/hmc/: dbw2_bp764_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  hmc.prec_1flav_dwf.xml.ini, hmc.prec_1flav_wilson.xml.ini,
	  hmc.prec_contfrac.xml.ini, hmc.prec_dwf.xml.ini,
	  hmc.prec_mixed_wilson.xml.ini, hmc.prec_parwilson.xml.ini,
	  hmc.prec_wilson.xml.ini, iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini,
	  iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Changed leapfrog from dt to
	  n_steps in input files

2005-05-26 01:13  edwards

	* lib/actions/ferm/invert/invcg1_array.cc: Simple compiler bug fix
	  in change to innerProduct

2005-05-26 00:28  edwards

	* lib/actions/ferm/invert/minvcg_array.cc: Removed definition of
	  hack of innerProductReal of an array.

2005-05-26 00:27  edwards

	* lib/actions/ferm/invert/invcg1_array.cc: Switched sum over
	  innerProducts to a single array version.

2005-05-24 17:44  edwards

	* lib/update/molecdyn/hmc/abs_hmc.h: Added printing of AccProb.

2005-05-20 20:06  bjoo

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6_bjoo.xml.ini: Here you
	  go Robert

2005-05-20 12:39  edwards

	* lib/Makefile.am: Added back in VPATH to top of directory.

2005-05-19 12:41  bjoo

	* lib/Makefile.am, lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.cc,
	  lib/update/molecdyn/integrator/lcm_sw_min_mixed.h,
	  tests/hmc/hmc.prec_wilson.xml.ini: Multi Scale Minimal thingie
	  integrator

2005-05-19 09:53  bjoo

	* tests/hmc/: hmc.prec_1flav_dwf.xml.ini, hmc.prec_wilson.xml.ini:
	  Tested LCM LEAPFROG IN HMC

2005-05-19 09:36  bjoo

	* mainprogs/main/hmc.cc: Fixed oops

2005-05-19 09:28  bjoo

	* lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc:
	  lcm_minimum_norm2_integrator.cc

2005-05-19 09:19  bjoo

	* lib/Makefile.am, lib/update/molecdyn/integrator/integrator.h,
	  lib/update/molecdyn/integrator/integrator_aggregate.cc,
	  lib/update/molecdyn/integrator/integrator_aggregate.h,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.cc,
	  lib/update/molecdyn/integrator/lcm_integrator_leaps.h,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.cc,
	  lib/update/molecdyn/integrator/lcm_minimum_norm2_integrator.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.cc,
	  lib/update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  mainprogs/main/hmc.cc: Rationalised the leapPs and leapQs added
	  in the new integrator from deForcrand

2005-05-19 08:18  bjoo

	* lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  mainprogs/tests/t_preccfz.cc: Tweaked a little more

2005-05-19 00:24  tag chroma1-21-5

2005-05-19 00:24  edwards

	* NEWS: Info 1.21.5

2005-05-18 23:37  edwards

	* tests/qproptransf/: prop.xml.ini, prop_milc_102.xml.ini,
	  seqsrc.xml.ini, seqsrc_milc_102.xml.ini: Removed gauge stuff.
	  Added milc tests.

2005-05-18 23:31  edwards

	* mainprogs/main/qproptransf.cc: Got rid of reading cfg stuff.
	  Collapsed down the scidac output stuff.

2005-05-18 21:12  edwards

	* mainprogs/: main/Makefile.am, tests/Makefile.am: Simplified
	  makefiles by using DEPENDENCIES

2005-05-18 17:15  edwards

	* tests/qproptransf/: prop.xml.ini, seqprop.xml.ini,
	  seqsrc.xml.ini: Additional example files.

2005-05-18 17:15  edwards

	* mainprogs/main/qproptransf.cc: Added support for seqsource.

2005-05-18 14:30  edwards

	* lib/update/molecdyn/integrator/abs_integrator.h: Added some
	  printing of the time.

2005-05-18 12:54  bjoo

	* mainprogs/tests/t_preccfz.cc: Added t_preccfz

2005-05-18 12:52  bjoo

	* lib/actions/ferm/invert/minvcg.cc,
	  tests/hmc/hmc.prec_1flav_wilson.xml.ini: Modified minvcg
	  cosmetically so that it may be just a few seconds faster -- may
	  not matter

2005-05-18 11:41  bjoo

	*
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_prec_contfrac.cc,
	  mainprogs/tests/t_precact.cc, tests/hmc/hmc.prec_wilson.xml.ini,
	  tests/t_prec_contfrac/t_prec_contfrac.xml.ini,
	  tests/t_precact/t_precact.prec_contfrac.xml.ini: Speeded up CFZ
	  Op

2005-05-18 05:35  bjoo

	* lib/meas/glue/fuzwilp.cc: Replaced Fuzwilp with Jun's version

2005-05-17 11:08  bjoo

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6.xml.ini: Fixed typo

2005-05-17 09:15  bjoo

	* mainprogs/tests/t_remez.cc,
	  tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p024_ls6.xml.ini: Fixed a bug
	  in SW sanity checking added new input file

2005-05-17 08:08  bjoo

	* lib/update/molecdyn/integrator/lcm_sexton_weingarten.h,
	  mainprogs/main/hmc.cc, tests/hmc/hmc.prec_wilson.xml.ini,
	  tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Seems good. Energy
	  is conserver in WIlson simulation with SW integrator. Can
	  increase step size above that of Leapfrog...

2005-05-17 07:14  bjoo

	* lib/Makefile.am, mainprogs/tests/t_remez.cc: Added Sexton
	  Weingarten integrator

2005-05-17 07:12  bjoo

	* lib/update/molecdyn/: integrator/integrator.h,
	  integrator/lcm_sexton_weingarten.cc,
	  integrator/lcm_sexton_weingarten.h,
	  hamiltonian/abs_hamiltonian.h: Added SW integrator

2005-05-16 13:04  edwards

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: Changed Rsd's.

2005-05-16 11:41  bjoo

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: Oops, typo
	  with digitPrecision... Corrected

2005-05-16 10:48  bjoo

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini:
	  Added bounds, and recomputed remez bounds. Made it start from a
	  thermo config

2005-05-16 07:48  bjoo

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: Added bounds
	  to iwasaki input file

2005-05-16 06:28  bjoo

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: Production run
	  params

2005-05-15 17:25  edwards

	* tests/hmc/iw_b2p2_8_16_cfz_Nf3_m0p03_ls8_dt0p005.ini.xml:
	  Finally, got something to Accept.

2005-05-13 21:19  edwards

	* tests/hmc/iw_b2p2_16_32_cfz_Nf3_m0p02_ls8.xml.ini: New input
	  file. Monomials more suitable to HMC/HMD.

2005-05-13 14:44  edwards

	* tests/hmc/dbw2_bp764_16_32_cfz_Nf3_m0p02_ls8.xml.ini: New proto
	  dbw2 input file.

2005-05-13 08:49  bjoo

	* lib/: Makefile.am, meas/inline/glue/glue.h,
	  meas/inline/glue/inline_fuzwilp.cc,
	  meas/inline/glue/inline_fuzwilp.h,
	  meas/inline/glue/inline_glue_aggregate.cc: Added inline fuzzed
	  wilson loop measurements from Jun Noaki

2005-05-11 23:11  kostas

	* lib/meas/inline/hadron/: inline_spectrumOct_w.cc,
	  inline_spectrumOct_w.h: removed the nrow from the parameters. it
	  is not needed

2005-05-11 22:04  edwards

	* tests/hypsmear/apesmear_v2.xml.ini: Sample input that actually
	  only transforms from SZIN format to SZINQIO/SCIDAC format. No
	  smearing.

2005-05-11 20:07  kostas

	* aclocal.m4: fixed the makefiles... at least it works for me...

2005-05-11 18:18  kostas

	* lib/meas/inline/hadron/inline_spectrumOct_w.cc: fixed a bug with
	  the bc

2005-05-11 13:27  kostas

	* lib/meas/inline/hadron/inline_spectrumOct_w.cc: fixed a bug

2005-05-11 12:59  kostas

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: fixed linkage

2005-05-06 18:28  kostas

	* lib/meas/inline/hadron/hadron.h: add octet spectrum

2005-05-06 17:42  kostas

	* lib/: Makefile.am, meas/inline/hadron/inline_spectrumOct_w.cc,
	  meas/inline/hadron/inline_spectrumOct_w.h: added octet spectrum
	  as an inline

2005-05-06 12:59  edwards

	* tests/hmc/hmctest.in.xml: Removed carriage returns

2005-05-05 13:32  edwards

	* tests/hmc/hmctest.in.xml: QCDOC test file

2005-05-05 00:05  tag chroma1-21-4

2005-05-05 00:05  edwards

	* install_scripts/jlab/config_chroma_parscalar-single.sh: Single
	  node install script

2005-05-05 00:03  edwards

	* NEWS: Info on 1.21.4

2005-05-05 00:02  edwards

	* install_scripts/jlab/config_chroma_parscalar-gigE.sh: Took out
	  dwf cg for now.

2005-05-04 13:10  osborn

	* aclocal.m4, lib/io/enum_io/enum_srcsnktype_io.cc,
	  lib/meas/inline/hadron/inline_make_source_w.cc,
	  lib/meas/sources/srcsnktype.h,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4: Added Z2 and U1
	  random sources.

2005-05-02 05:55  bjoo

	* tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Changed to adhere to
	  new interface

2005-05-02 05:43  bjoo

	* tests/hmc/hmc.prec_1flav_dwf.xml.ini: Made test file conform to
	  new 5D RHMC interface

2005-05-02 05:35  bjoo

	* lib/update/molecdyn/monomial/: genapprox.cc,
	  one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h: Changed interface. Now
	  specify only a degree and a degreePV for the monomials and must
	  use separate MD and MC hamiltonians if the MD setup needs be
	  different from the MC setup. Also now allow separate nth roots
	  for the normal and PV operators

2005-05-01 21:27  tag chroma1-21-3

2005-05-01 21:27  edwards

	* NEWS: Info on 1.21.3

2005-05-01 21:20  edwards

	* lib/meas/inline/hadron/inline_hadron_aggregate.cc: Added qpropqio

2005-04-27 21:02  edwards

	* tests/hmc/: hmc.prec_mixed_wilson.xml.ini,
	  iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Added missing nthRoot flag.

2005-04-25 12:01  tag chroma1-21-2

2005-04-25 12:01  edwards

	* NEWS: Info on 1.21.2

2005-04-25 10:42  mcneile

	* install_scripts/LIVERPOOL/get_chroma.csh: This is the script I
	  give everyone to compile chroma/qdp++ on a linux box at
	  Liverpool.

2005-04-25 09:40  bjoo

	*
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_b1c1_v7.xml.ini:
	  Ooops

2005-04-25 09:39  bjoo

	* lib/Makefile.am, lib/update/molecdyn/monomial/gauge_monomial.cc,
	  lib/update/molecdyn/monomial/prec_one_flavor_rat_monomial5d_w.cc,
	  mainprogs/main/hmc.cc,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_b1c1_v7.xml.ini:
	  Added tuning strategy

2005-04-25 09:29  bjoo

	* lib/actions/ferm/fermacts/: fermacts_w.h,
	  ovext_const_div_by_resp_strategy.h, ovext_constant_strategy.cc,
	  ovext_constant_strategy.h, ovext_neuberger_strategy.cc,
	  ovext_neuberger_strategy.h, ovext_tuning_strategy.h,
	  ovext_tuning_strategy_aggregate.cc,
	  prec_ovext_fermact_array_w.cc, unprec_ovext_fermact_array_w.cc:
	  Added a strategy named Neuberger as it tries to mimic
	  coefficients of the Neuberger form of the Ovext matrix

2005-04-25 08:44  mcneile

	* lib/meas/hadron/loops_s.h: I have added code to write out the
	  error on the loops.

2005-04-24 09:46  mcneile

	* mainprogs/tests/t_propagator_w.cc: I have added an additional pop
	  to ensure that a valid xml document is produced.

2005-04-24 09:44  mcneile

	* scripts/run_xmldiff.pl: I have added a test case for the Wilson
	  inverter to the script.

2005-04-24 09:42  mcneile

	* tests/propagator_w/: INPUT_W.xml, t_propagator_w.xml,
	  t_propagator_w_METRIC.xml: test cases for the wilson inverter
	  job.

2005-04-24 08:56  mcneile

	* mainprogs/tests/t_propagator_w.cc: I have removed some dead code.
	  The code will now read in the kappa value.

2005-04-24 08:30  mcneile

	* mainprogs/tests/t_propagator_w.cc: I have removed more deadcode
	  from this routine.

2005-04-24 08:20  mcneile

	* mainprogs/tests/t_propagator_w.cc: I havee updated the code so
	  that the correct inverter calls are used. I have added error
	  checking code for the input file.

2005-04-24 07:23  mcneile

	* tests/t_asqtad_prop/t_propagator_s.xml: This file should only
	  differ by some small structual things.

2005-04-24 07:18  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have hardwired in the option
	  that gauge fixed operators are used.	If the program can not find
	  the input file, then a sensible message is generated.

2005-04-24 06:16  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have added some try/catch
	  lines so that the code doesn't just die with a core dump when it
	  can not find the input file

2005-04-24 05:38  mcneile

	* mainprogs/tests/t_lower_tests.cc: I have closed the output file,
	  so the output is now valid xml.  Also the imput file now is taken
	  from the command line argument.

2005-04-24 05:22  mcneile

	* scripts/run_xmldiff.pl: I have fixed one of the names of the
	  input files.	The svript always runs make for each application.

2005-04-22 15:06  kostas

	* lib/meas/hadron/barhqlq_w.cc: added lambda and Xi sources

2005-04-22 13:21  bjoo

	* lib/actions/ferm/fermacts/ovext_const_div_by_resp_strategy.cc,
	  tests/propagator/propagator_prec_ht_partfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_partfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_b1c1_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_partfrac5d_zolo_v7.xml.ini:
	  Added ovext xml input and result files

2005-04-22 12:58  bjoo

	* lib/: Makefile.am, actions/ferm/fermacts/fermacts_aggregate_w.cc,
	  actions/ferm/fermacts/ovext_const_div_by_resp_strategy.cc,
	  actions/ferm/fermacts/ovext_const_div_by_resp_strategy.h,
	  actions/ferm/fermacts/ovext_constant_strategy.cc,
	  actions/ferm/fermacts/ovext_constant_strategy.h,
	  actions/ferm/fermacts/ovext_tuning_strategy.h,
	  actions/ferm/fermacts/ovext_tuning_strategy_aggregate.cc,
	  actions/ferm/fermacts/ovext_tuning_strategy_aggregate.h,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.h: Made a
	  factory for tuning strategies for OvExt operators. Could do one
	  for the cont-fracs too I guess

2005-04-22 10:36  bjoo

	* lib/actions/ferm/: fermacts/prec_ovext_fermact_array_w.cc,
	  linop/prec_ovext_linop_array_w.cc: Ovext Bugfix

2005-04-22 09:28  bjoo

	* lib/Makefile.am, mainprogs/tests/t_precact.cc,
	  tests/propagator/propagator_zolo4d_v7.xml.ini: Added
	  preconditioned PartFrac op

2005-04-22 09:27  bjoo

	* lib/actions/ferm/: fermacts/fermacts_aggregate_w.cc,
	  fermacts/fermacts_w.h, fermacts/prec_ovext_fermact_array_w.cc,
	  fermacts/prec_ovext_fermact_array_w.h, linop/linop_w.h,
	  linop/prec_ovext_linop_array_w.cc,
	  linop/prec_ovext_linop_array_w.h,
	  linop/unprec_ovext_linop_array_w.cc: Added Preconditioned OvExt
	  Operator

2005-04-21 10:04  bjoo

	* lib/actions/ferm/linop/: unprec_ovext_linop_array_w.cc,
	  unprec_ovext_linop_array_w.h: unprec ovext linop

2005-04-21 10:04  bjoo

	* lib/actions/ferm/fermacts/: unprec_ovext_fermact_array_w.cc,
	  unprec_ovext_fermact_array_w.h: unprec ovext fermact

2005-04-19 16:05  edwards

	* lib/meas/inline/: abs_inline_measurement.h,
	  abs_inline_measurement_factory.h, inline_aggregate.h,
	  make_xml_file.cc, make_xml_file.h, eig/inline_eig_aggregate.h,
	  eig/inline_eigbnds.h, glue/inline_glue_aggregate.h,
	  glue/inline_plaquette.h, glue/inline_polylp.h,
	  glue/inline_wilslp.h, hadron/inline_bar3ptfn_w.h,
	  hadron/inline_building_blocks_w.h,
	  hadron/inline_hadron_aggregate.h, hadron/inline_make_source_w.h,
	  hadron/inline_mres_w.cc, hadron/inline_mres_w.h,
	  hadron/inline_multipole_w.cc, hadron/inline_propagator_w.cc,
	  hadron/inline_propagator_w.h, hadron/inline_qpropqio_w.h,
	  hadron/inline_qqq_w.h, hadron/inline_seqsource_w.h,
	  hadron/inline_sink_smear_w.h, hadron/inline_spectrum_w.cc,
	  smear/inline_ape_smear.h, smear/inline_hyp_smear.h,
	  smear/inline_smear_aggregate.h: Added some more xml_file control.
	  Added more doxygen comments.

2005-04-19 13:11  edwards

	* lib/Makefile.am: Added meas/inline/make_xml_file.{h,cc}

2005-04-19 13:11  edwards

	* lib/meas/inline/: inline.h, make_xml_file.cc, make_xml_file.h,
	  hadron/inline_mres_w.cc, hadron/inline_mres_w.h,
	  hadron/inline_multipole_w.cc, hadron/inline_multipole_w.h,
	  hadron/inline_spectrum_w.cc, hadron/inline_spectrum_w.h: Now
	  support XML being writen to auxilliary file.

2005-04-19 10:04  mcneile

	* scripts/run_xmldiff.pl: This is my first attempt to update this
	  script to work with the new funky -i / -o features of chroma.

2005-04-18 23:03  edwards

	* install_scripts/jlab/: build_some.csh, install_some.csh,
	  install_some_all.csh: More scripts

2005-04-18 12:26  tag chroma1-21-1

2005-04-18 12:26  edwards

	* NEWS: Info on 1.21.0

2005-04-18 12:25  edwards

	* tests/: hmc/hmc.prec_1flav_dwf.xml.ini,
	  hmc/hmc.prec_1flav_wilson.xml.ini,
	  t_leapfrog/t_leapfrog.prec_1flav_wilson.xml.ini,
	  t_leapfrog/t_leapfrog.prec_wilson.xml.ini: Updated one-flavor
	  stuff to support nth-rootery.

2005-04-18 12:24  edwards

	* tests/m_res4d/mres4_tanh.xml.ini: Proper args now.

2005-04-18 12:23  edwards

	* lib/update/molecdyn/monomial/: genapprox.cc, genapprox.h,
	  one_flavor_rat_monomial5d_w.h, one_flavor_rat_monomial_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h: Updated ONE flavor monomials
	  to support nth-rootery. There is now a required "nthRoot" param.

2005-04-18 12:14  tag chroma1-21-0

2005-04-18 12:14  edwards

	* aclocal.m4, configure: Induced changes.

2005-04-18 12:13  edwards

	* configure.ac: Changed to version 1.21.0

2005-04-18 12:11  edwards

	* NEWS: Info on 1.21.0

2005-04-18 12:09  edwards

	* lib/meas/inline/eig/: inline_eigbnds.cc, inline_eigbnds.h: Print
	  out input params now.

2005-04-15 07:27  edwards

	* mainprogs/main/qpropqio.cc: Made a wrapper over inline_qpropqio

2005-04-15 07:26  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Added obsvP to ChromaProp

2005-04-15 07:23  edwards

	* lib/meas/inline/eig/: inline_eigbnds.cc, inline_eigbnds.h: Added
	  usePV flag

2005-04-15 07:23  edwards

	* lib/meas/inline/hadron/inline_propagator_w.cc: Moved obsvP to
	  ChromaProp params.

2005-04-15 07:22  edwards

	* lib/: meas/inline/hadron/hadron.h, Makefile.am: Added
	  inline_qpropqio

2005-04-15 07:22  edwards

	* lib/meas/inline/hadron/: inline_qpropqio_w.cc,
	  inline_qpropqio_w.h: Moved over from mainprogs/main/qpropqio.cc

2005-04-12 16:34  bjoo

	* lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc:
	  Changed to use only Ls Dslash-es in HT contfrac

2005-04-10 23:01  edwards

	* mainprogs/tests/tests.h: Changed name of defgroup

2005-04-10 22:48  edwards

	* lib/actions/boson/operator/klein_gord.h: Added doxygen comments.

2005-04-10 22:44  edwards

	* mainprogs/tests/: t_disc_loop_s.cc, t_fermion_loop_w.cc,
	  t_propagator_fuzz_s.cc, t_propagator_nrqcd.cc, t_propagator_s.cc,
	  t_propagator_twisted.cc, t_propagator_w.cc: Changed ingroup to
	  testsmain

2005-04-10 21:59  edwards

	* lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/stag_fermact_s.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermbcs/fermbcs.h,
	  lib/actions/ferm/linop/linop_s.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/gauge/gaugebcs/gaugebcs.h, lib/io/enum_io/enum_io.h,
	  lib/util/info/info.h, mainprogs/main/ExampleBuildingBlocks.cc,
	  mainprogs/main/apesmear.cc, mainprogs/main/chroma.cc,
	  mainprogs/main/hmc.cc, mainprogs/main/hypsmear.cc,
	  mainprogs/main/mres.cc, mainprogs/main/multi_propagator.cc,
	  mainprogs/main/multi_propagator_comp.cc,
	  mainprogs/main/propagator.cc, mainprogs/main/propagator_comp.cc,
	  mainprogs/main/propagator_hack.cc, mainprogs/main/qpropadd.cc,
	  mainprogs/main/qpropgfix.cc, mainprogs/main/seqsource.cc,
	  mainprogs/main/spectrum_w.cc, mainprogs/main/stoutsmear.cc,
	  mainprogs/main/wallformfac.cc, mainprogs/tests/t_disc_loop_s.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_twisted.cc,
	  mainprogs/tests/t_propagator_w.cc: Fixed up doxygen comments.

2005-04-10 21:15  edwards

	* lib/actions/ferm/fermacts/: fermacts_s.h, fermacts_w.h,
	  overlap_fermact_base_w.h, prec_dwf_fermact_array_w.h,
	  prec_kno_fermact_array_w.h, prec_nef_fermact_array_w.h,
	  prec_zolo_nef_fermact_array_w.h, unprec_dwf_fermact_array_w.h,
	  unprec_nef_fermact_array_w.h, unprec_zolo_nef_fermact_array_w.h:
	  Cleaning up doxygen comments.

2005-04-10 18:32  edwards

	* lib/actions/gauge/: gaugeacts/gaugeact_factory.h,
	  gaugeacts/lw_1loop_gaugeact.h, gaugeacts/lw_tree_gaugeact.h,
	  gaugeacts/pg_gaugeact.h, gaugeacts/plaq_gaugeact.h,
	  gaugeacts/rbc_gaugeact.h, gaugeacts/rect_gaugeact.h,
	  gaugeacts/rg_gaugeact.h, gaugeacts/wilson_gaugeact.h,
	  gaugebcs/gaugebc_schroedinger.h: Fixed doxygen comments.

2005-04-10 18:25  edwards

	* lib/actions/gauge/gaugebcs/: gaugebc_aggregate.h,
	  gaugebc_factory.h, gaugebc_periodic.h, gaugebc_schroedinger.h,
	  gaugebc_simple.h: Fixed doxygen comments.

2005-04-10 18:05  edwards

	* lib/update/molecdyn/hamiltonian/: abs_hamiltonian.h,
	  exact_hamiltonian.h: More doxygen fixups.

2005-04-10 17:57  edwards

	* lib/update/molecdyn/: hmc/hmc.h,
	  monomial/one_flavor_rat_monomial5d_w.h,
	  monomial/two_flavor_monomial5d_w.h: Fixed more doxygen comments.

2005-04-10 17:47  edwards

	* lib/Makefile.am: Added inline_mres code

2005-04-10 17:46  edwards

	* lib/update/molecdyn/: field_state.h,
	  hamiltonian/abs_hamiltonian.h, hamiltonian/exact_hamiltonian.h,
	  hmc/abs_hmc.h, hmc/global_metropolis_accrej.h, hmc/hmc.h,
	  hmc/lcm_hmc.h, integrator/abs_integrator.h,
	  integrator/lcm_pqp_leapfrog.h,
	  integrator/md_integrator_factory.h, monomial/abs_monomial.h,
	  monomial/gauge_monomial.h, monomial/genapprox.h,
	  monomial/monomial_aggregate_w.h, monomial/monomial_factory.h,
	  monomial/monomial_w.h, monomial/one_flavor_rat_monomial_w.h,
	  monomial/prec_one_flavor_rat_monomial5d_w.h,
	  monomial/prec_one_flavor_rat_monomial_w.h,
	  monomial/prec_two_flavor_monomial5d_w.h,
	  monomial/prec_two_flavor_monomial_w.h,
	  monomial/two_flavor_monomial_w.h,
	  monomial/unprec_one_flavor_rat_monomial5d_w.h,
	  monomial/unprec_one_flavor_rat_monomial_w.h,
	  monomial/unprec_two_flavor_monomial5d_w.h,
	  monomial/unprec_two_flavor_monomial_w.h,
	  predictor/chrono_predictor.h,
	  predictor/chrono_predictor_factory.h,
	  predictor/circular_buffer.h, predictor/last_solution_predictor.h,
	  predictor/linear_extrap_predictor.h, predictor/lu_solve.h,
	  predictor/mre_extrap_predictor.h,
	  predictor/predictor_aggregate.h,
	  predictor/zero_guess_predictor.h: Fixed up doxygen comments.

2005-04-10 17:45  edwards

	* docs/chromadoc: Exclude old code.

2005-04-10 16:40  edwards

	* mainprogs/main/mres.cc, lib/meas/inline/hadron/inline_mres_w.cc,
	  lib/meas/inline/hadron/inline_mres_w.h: Put nrow into a Param_t
	  struct.

2005-04-10 16:32  edwards

	* mainprogs/main/mres.cc: Made a wrapper over inline code.

2005-04-10 16:31  edwards

	* lib/meas/inline/hadron/: hadron.h, inline_hadron_aggregate.cc,
	  inline_mres_w.cc, inline_mres_w.h: Added mres inline meas code.

2005-04-10 13:06  edwards

	* lib/meas/inline/hadron/: inline_bar3ptfn_w.cc,
	  inline_bar3ptfn_w.h, inline_make_source_w.cc,
	  inline_propagator_w.cc, inline_qqq_w.cc, inline_seqsource_w.cc:
	  Small fixes/updates. Added some diagnostic output.

2005-04-10 13:05  edwards

	* lib/meas/inline/smear/inline_hyp_smear.cc: Added missing write
	  driver.

2005-04-10 13:00  edwards

	* tests/: qqq_w/chroma_qqq_v4.xml.ini,
	  qqq_w/chroma_qqq_v4.xml.linux-scalar-intel.xml,
	  qqq_w/qqq_w_v4.linux-scalar-intel.qqq_pt,
	  qqq_w/qqq_w_v4.linux-scalar-intel.qqq_smeared,
	  sink_smearing/chroma_sink_smear_v4.linux-scalar-intel.xml,
	  sink_smearing/chroma_sink_smear_v4.xml.ini: New output and new
	  chroma drivers.

2005-04-10 12:45  edwards

	* tests/bar3ptfn/: bar3ptfn_v6.linux-scalar-intel.dat,
	  bar3ptfn_v6.linux-scalar-intel.xml, bar3ptfn_v6.xml.ini: New
	  output format.

2005-04-10 12:43  edwards

	* tests/: ExampleBuildingBlocks/examplebb_v1.linux-scalar.xml,
	  hypsmear/hypsmear_v3.linux-scalar-intel.xml,
	  spectrum_w/spectrum_w_v11.linux-scalar-intel.xml.gz: New output
	  formats.

2005-04-10 12:42  edwards

	* mainprogs/main/: ExampleBuildingBlocks.cc, apesmear.cc,
	  bar3ptfn.cc, hypsmear.cc, make_source.cc, propagator.cc,
	  seqsource.cc, spectrum_w.cc: Switched to now wrap over inline
	  measurement codes.

2005-04-10 11:04  edwards

	* mainprogs/main/propagator.cc: Changed to wrap around inline
	  measurement code.

2005-04-10 11:03  edwards

	* tests/propagator/propagator_v7.linux-scalar-intel.xml: New output
	  format.

2005-04-09 19:17  edwards

	* tests/make_source/make_source_v5.linux-scalar-intel.xml: New
	  output format.

2005-04-09 19:15  edwards

	* lib/meas/inline/hadron/: inline_multipole_w.cc,
	  inline_multipole_w.h: Fixes to read correct params.

2005-04-09 19:15  edwards

	* lib/meas/hadron/multipole_w.cc: Added magnetic code.

2005-04-09 19:14  edwards

	* mainprogs/main/make_source.cc: Switch to using inline measurement
	  code.

2005-04-07 22:44  edwards

	* tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Updated remez
	  bounds.

2005-04-07 22:23  edwards

	* tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Added missing stuff.

2005-04-07 22:21  edwards

	* tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Fixes.

2005-04-07 22:17  edwards

	* tests/hmc/iw_b2p2_dwf_Nf3_m0p04_ls8.xml.ini: Big machine test
	  file.

2005-04-07 22:16  edwards

	* tests/hmc/hmc.prec_1flav_dwf.xml.ini: Turned back into 1flavor

2005-04-07 00:59  edwards

	* tests/: hmc/hmc.prec_1flav_dwf.xml.ini,
	  hmc/hmc.prec_1flav_wilson.xml.ini, hmc/hmc.prec_contfrac.xml.ini,
	  hmc/hmc.prec_dwf.xml.ini, hmc/hmc.prec_mixed_wilson.xml.ini,
	  hmc/hmc.prec_parwilson.xml.ini, hmc/hmc.prec_wilson.xml.ini,
	  t_hmc/t_hmc.prec_1flav_dwf.xml.ini,
	  t_hmc/t_hmc.prec_1flav_wilson.xml.ini,
	  t_hmc/t_hmc.prec_contfrac.xml.ini, t_hmc/t_hmc.prec_dwf.xml.ini,
	  t_hmc/t_hmc.prec_mixed_wilson.xml.ini,
	  t_hmc/t_hmc.prec_parwilson.xml.ini,
	  t_hmc/t_hmc.prec_wilson.xml.ini: Moved files from t_hmc to hmc

2005-04-06 23:28  edwards

	* lib/meas/hadron/multipole_w.cc: Small change.

2005-04-06 23:28  edwards

	* lib/meas/hadron/formfac_w.h: Added include of sftmom.h

2005-04-06 23:28  edwards

	* lib/io/writeszin.h: Added include of io/szin_io.h

2005-04-06 23:27  edwards

	* lib/Makefile.am: Added new hadron and smear inline measurements.

2005-04-06 23:24  edwards

	* mainprogs/main/hmc.cc: Now write out a gauge xml for
	  measurements.

2005-04-06 23:24  edwards

	* mainprogs/main/apesmear.cc: Added missing pop(xml_out).

2005-04-06 23:24  edwards

	* mainprogs/main/chroma.cc: Put try/catch around reading inline
	  xml.

2005-04-06 23:23  edwards

	* lib/meas/inline/: inline.h, hadron/hadron.h,
	  hadron/inline_bar3ptfn_w.cc, hadron/inline_bar3ptfn_w.h,
	  hadron/inline_hadron_aggregate.cc, hadron/inline_multipole_w.cc,
	  hadron/inline_multipole_w.h, smear/inline_ape_smear.cc,
	  smear/inline_ape_smear.h, smear/inline_hyp_smear.cc,
	  smear/inline_hyp_smear.h, smear/inline_smear_aggregate.cc,
	  smear/inline_smear_aggregate.h, smear/smear.h: New inline
	  measurements. Added ape_smear, hyp_smear, bar3ptfn, multipole.

2005-04-06 00:40  edwards

	* tests/t_inline/t_inline.xml.ini: Moved to chroma

2005-04-06 00:39  edwards

	* mainprogs/tests/t_inline.cc: Induced changes.

2005-04-06 00:39  edwards

	* mainprogs/tests/Makefile.am: Removed t_inline

2005-04-06 00:36  edwards

	* mainprogs/main/chroma.cc: Inline measurement driver carried over
	  from t_inline.

2005-04-06 00:35  edwards

	* mainprogs/main/Makefile.am: Added chroma as a main prog.

2005-04-06 00:34  edwards

	* lib/meas/inline/: abs_inline_measurement.h, inline.h,
	  inline_aggregate.cc, eig/eig.h, eig/inline_eig_aggregate.cc,
	  eig/inline_eigbnds.cc, eig/inline_eigbnds.h,
	  glue/inline_plaquette.cc, glue/inline_plaquette.h,
	  glue/inline_polylp.cc, glue/inline_polylp.h,
	  glue/inline_wilslp.cc, glue/inline_wilslp.h, hadron/hadron.h,
	  hadron/inline_building_blocks_w.cc,
	  hadron/inline_building_blocks_w.h,
	  hadron/inline_hadron_aggregate.cc,
	  hadron/inline_hadron_aggregate.h, hadron/inline_make_source_w.cc,
	  hadron/inline_make_source_w.h, hadron/inline_propagator_w.cc,
	  hadron/inline_propagator_w.h, hadron/inline_qqq_w.cc,
	  hadron/inline_qqq_w.h, hadron/inline_seqsource_w.cc,
	  hadron/inline_seqsource_w.h, hadron/inline_sink_smear_w.cc,
	  hadron/inline_sink_smear_w.h, hadron/inline_spectrum_w.cc,
	  hadron/inline_spectrum_w.h: New inline measurement codes. Changed
	  () function in Inline meas to take a XMLBufferWriter for the
	  gauge field xml.

2005-04-06 00:33  edwards

	* lib/Makefile.am: Added new inline hadron measurements.

2005-04-06 00:30  tag chroma1-20-6

2005-04-06 00:30  edwards

	* TODO: More stuff to do.

2005-04-06 00:28  edwards

	* NEWS: Info on 1.20.6

2005-04-04 23:45  edwards

	* lib/meas/hadron/multipole_w.cc: Added in deriv stuff for magnetic
	  case. However, just telephone book for now.

2005-04-03 23:22  edwards

	* lib/meas/hadron/: hadron_w.h, multipole_w.cc, multipole_w.h:
	  Updated. Added multipole_w.h to hadron_w.h

2005-04-02 16:58  tag chroma1-20-5

2005-04-02 16:58  bjoo

	* lib/actions/ferm/linop/prec_dwf_linop_array_w.cc: Major Oops

2005-04-02 12:16  edwards

	* NEWS: INfo on 1.20.5

2005-03-30 10:55  bjoo

	* lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_precdwf.cc,
	  mainprogs/tests/t_precnef.cc,
	  tests/propagator/propagator_prec_tanh_nef_v7.xml.ini: Fused loops
	  in the NEF op too

2005-03-30 08:15  bjoo

	* lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  mainprogs/tests/t_precdwf.cc: Made prec_dwf_linop_array faster

2005-03-30 06:26  bjoo

	* mainprogs/tests/t_precdwf.cc: Fixed some flopcounts in t_precdwf

2005-03-27 13:10  edwards

	* lib/meas/hadron/: multipole_w.cc, multipole_w.h: Added output
	  headers.

2005-03-25 10:28  flemingg

	* mainprogs/main/: bar3ptfn.cc, make_source.cc, spectrum_w.cc:
	  Added some messages at the end to aid in identifying failed jobs
	  by examining stdout.

2005-03-23 23:34  edwards

	* lib/meas/hadron/: multipole_w.cc, multipole_w.h: Changed doxygen
	  comments.

2005-03-23 23:32  edwards

	* lib/meas/hadron/: multipole_w.cc, multipole_w.h: Multipole
	  expansion computations for 3pt funcs.

2005-03-23 23:27  edwards

	* lib/Makefile.am: Added multipole_w.{h,cc}

2005-03-22 11:58  tag chroma1-20-4

2005-03-22 11:58  edwards

	* NEWS: Info on 1.20.4

2005-03-22 11:53  edwards

	* mainprogs/main/Makefile.am: Added qpropqio

2005-03-22 11:53  edwards

	* mainprogs/main/qpropqio.cc: Convert solely within SciDAC volume
	  formats.

2005-03-22 11:53  edwards

	* tests/qpropqio/qpropqio_v1.xml.ini: New test file.

2005-03-21 18:10  tag chroma1-20-3

2005-03-21 18:10  edwards

	* NEWS: Info on 1.20.3

2005-03-21 11:18  edwards

	* lib/update/molecdyn/monomial/genapprox.cc: For sanity check,
	  added an include of genapprox.h

2005-03-18 08:26  bjoo

	* lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_precdwf.cc,
	  tests/m_res4d/mres4_tanh.xml.ini,
	  tests/m_res4d/mres4_zolo_nef.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_prec_zolo_nef_v7.xml.ini: Fixed a
	  BLAS ism in prec DWF. Added t_ritz_KS to be automatically built

2005-03-18 08:23  bjoo

	* lib/actions/ferm/linop/prec_dwf_linop_array_w.cc: Fixed a Blasism
	  there

2005-03-18 00:12  edwards

	* lib/meas/hadron/: mesonseqsrc_w.cc, mesonseqsrc_w.h,
	  seqsrc_funcmap_w.cc: Switched pion seqsrc to use the indirect
	  method.

2005-03-18 00:11  edwards

	* tests/seqsource/t_seqsource.xml.ini: Test file.

2005-03-18 00:09  edwards

	* mainprogs/tests/: Makefile.am, t_seqsource.cc: Added t_seqsource

2005-03-15 12:23  bjoo

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.cc,
	  prec_nef_general_linop_array_w.cc, prec_nef_linop_array_w.cc:
	  Made these use chiralProjectPlus and chiralProjectMinus

2005-03-15 11:58  edwards

	* TODO: Updated. Added Clover to to.

2005-03-14 23:14  tag chroma1-20-2

2005-03-14 23:14  edwards

	* NEWS: Info on 1.20.2

2005-03-14 23:13  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc,
	  lib/meas/hadron/BuildingBlocks_w.h,
	  mainprogs/main/ExampleBuildingBlocks.cc: Fixed/changed building
	  blocks to now loop over each seqprop and then compute BB. NOTE:
	  this is not nice - no optimization of BB can be done sharing work
	  over many seqprop, but the flaw in the current model is the
	  number of file handles grows with each seqprop.  This rapidly
	  saturates linux limits. So, force each BB to be done
	  independently of other BB.  If we are willing to live with BB
	  moving to an "append-close" model, then there would be no scaling
	  problem with file-handles and the BB amortized over all seqprop
	  could be revisited. The global-sums is the current bottleneck -
	  maybe then the append-close won't dominate it?

2005-03-14 23:09  edwards

	* tests/ExampleBuildingBlocks/: examplebb_v1.linux-scalar.xml,
	  output_v1.txt, output_v1.xml, run.sh: Removed out of date files.
	  New output format for XML of ExampleBuildingBlocks

2005-03-14 23:08  edwards

	* mainprogs/main/seqsource.cc: Changed a throw to a QDP_abort(1);

2005-03-14 23:06  edwards

	* lib/meas/hadron/: mesonseqsrc_w.cc, mesonseqsrc_w.h,
	  seqsrc_funcmap_w.cc: Added new meson sources.

2005-03-12 13:43  tag chroma1-20-1

2005-03-12 13:43  edwards

	* tests/: ExampleBuildingBlocks/examplebb_v1.linux-scalar.xml,
	  bar3ptfn/bar3ptfn_v6.linux-scalar-intel.xml: New example output.

2005-03-12 13:43  edwards

	* NEWS: Info on 1.20.1

2005-03-12 13:42  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Changed to use an XML
	  interface. Added a GammaInsertion capability.

2005-03-12 13:41  edwards

	* lib/meas/hadron/: BuildingBlocks_w.cc, BuildingBlocks_w.h: Added
	  a generic extra gamma-matrix insertion inside formfac-contraction
	  that allows transition FF like rho->pi. The default
	  GammaInsertion=0 corresponding to Gamma(0)=1 should be used.
	  Changed pointers of BinaryWriter to simply instances. Got rid of
	  char* in favor of string.

2005-03-12 13:38  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Small cleanups. In nuclUUnpol
	  change a prop=1 to simply a spinmatrix=1 to save flops.

2005-03-12 12:50  edwards

	* tests/propagator/propagator_v7.xml.ini: Removed unused t_source.

2005-03-10 22:59  edwards

	* tests/ExampleBuildingBlocks/: examplebb_v1.linux-scalar.xml,
	  examplebb_v1.xml.ini: First version of input and output xml

2005-03-10 14:18  edwards

	* tests/propagator/propagator_v7.xml.ini: Added default (not turned
	  on) Aniso just for reference.

2005-03-09 14:56  edwards

	* install_scripts/jlab/config_chroma_parscalar-gigE.sh: Added dwf
	  cg

2005-03-06 22:06  tag chroma1-20-0

2005-03-06 22:06  edwards

	* tests/bar3ptfn/: bar3ptfn_v6.linux-scalar-intel.dat,
	  bar3ptfn_v6.linux-scalar-intel.xml: Updated to use
	  NUCL_{U,D}_MIXED_NONREL codes.

2005-03-06 22:04  edwards

	* tests/: bar3ptfn/bar3ptfn_v6.xml.ini,
	  seqsource/test_prop_seqsource_v1.csh: Added
	  NUCL_{U,D}_MIXED_NONREL to tests.

2005-03-06 22:03  edwards

	* NEWS: Info on 1.20.0

2005-03-06 21:59  edwards

	* aclocal.m4, configure: Induced changes.

2005-03-06 21:59  edwards

	* configure.ac: Changed to version 1.20

2005-03-06 21:57  edwards

	* mainprogs/main/bar3ptfn.cc: Changed to support only named strings
	  for sources. Seqsource magic numbers have finally been removed.

2005-03-06 21:57  edwards

	* mainprogs/main/seqsource.cc: Overhauled to now use mapped
	  function calls for the source creation.

2005-03-06 21:55  edwards

	* lib/update/molecdyn/monomial/: gauge_monomial.h,
	  one_flavor_rat_monomial5d_w.h, one_flavor_rat_monomial_w.h,
	  two_flavor_monomial5d_w.h, two_flavor_monomial_w.h: Added force
	  measurements. Hopefully this doesn't get too costly.	The
	  measurements are simply norm2(ds_u) calls.

2005-03-06 21:55  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h, hadron_w.h,
	  hadseqsrc_w.cc, hadseqsrc_w.h, mesonseqsrc_w.cc, mesonseqsrc_w.h,
	  seqsrc_funcmap_w.cc, seqsrc_funcmap_w.h: Changed barseqsrc and
	  mesonseqsrc to now provide functions for a new hadseqsrc. These
	  sources are mapped function calls.

2005-03-06 21:54  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Changed sequential source to
	  always be a string.

2005-03-06 21:53  edwards

	* lib/io/enum_io/: enum_io.h, enum_seqsrctype_io.cc,
	  enum_seqsrctype_io.h: Removed enum_seqsrctype_io

2005-03-06 21:53  edwards

	* lib/Makefile.am: Added seqsrc_funcmap_w.{h,cc}. Removed
	  enum_seqsrctype* . Added funcmap.h

2005-03-06 21:52  edwards

	* lib/funcmap.h: Function map - build a map of function calls.
	  Avoids indirection of call-back used in ObjectFactory.

2005-03-06 18:31  tag chroma1-19-14

2005-03-06 18:31  edwards

	* NEWS: Info on 1.19.14

2005-03-06 18:20  edwards

	* lib/io/: writeszin.cc, writeszin.h: Made SzinGauge_t a copy to
	  writeSzinTrunc. Make a local copy.

2005-03-06 18:19  edwards

	* lib/io/szin_io.cc: Bug fix. The "Nd" and "Nc" where taken to be
	  the enclosing scope, instead of the QDP vars. Qualify with QDP::

2005-03-06 13:43  edwards

	* tests/hypsmear/hypsmear_v3.xml.ini: Changed to 1 smearing.

2005-03-06 13:20  edwards

	* mainprogs/main/Makefile.am: Moved up propagator_hack to
	  bin_programs for now.

2005-03-06 12:50  edwards

	* mainprogs/main/propagator_hack.cc: Added szin reading/writing.
	  This is a hack.

2005-03-06 12:25  edwards

	* mainprogs/main/Makefile.am: Added propagator_hack.cc

2005-03-06 12:25  edwards

	* mainprogs/main/propagator_hack.cc: HACK***** - szin propagator
	  writer.

2005-03-06 12:21  edwards

	* mainprogs/main/propagator.cc: Changed a final "throw" to
	  QDP_abort(1).

2005-03-06 12:16  edwards

	* tests/hypsmear/hypsmear_v3.xml.ini: Version 3 input file.

2005-03-04 10:48  edwards

	* TODO: More stuff.

2005-03-03 12:19  edwards

	* lib/tpreclinop.h: Updated the even-odd time prec linops.

2005-03-03 00:01  tag chroma1-19-13

2005-03-03 00:01  edwards

	* NEWS: Info on 1.19.13

2005-03-02 23:51  edwards

	* tests/propagator/propagator_prec_zolo_nef_b1c1_v7.xml.ini:
	  Another test file.

2005-03-02 23:38  edwards

	* lib/actions/ferm/fermacts/: prec_zolo_nef_fermact_array_w.cc,
	  unprec_zolo_nef_fermact_array_w.cc: Arrghh, bug fix. The
	  scale_fac was messed up in the ZOLO case.  This was introduced in
	  the conversion to having ApproxMin/Max inside the FermionAction
	  group.

2005-03-02 23:05  edwards

	* mainprogs/main/propagator.cc: Ooops, accidentally turned off
	  mresP=false. It should be on.

2005-03-02 20:47  tag chroma1-19-12

2005-03-02 20:47  edwards

	* NEWS: Info on 1.19.12

2005-03-02 17:08  bjoo

	* tests/propagator/:
	  propagator_zolo_dwftransf4d_v7.linux-scalar-intel.xml,
	  propagator_zolo_dwftransf4d_v7.xml.ini: 4D Sign function of H_t
	  test

2005-03-02 14:07  edwards

	* lib/init/chroma_init.cc: Added paranoia checks of whether
	  QDP_isInitialized .

2005-03-02 14:00  edwards

	* lib/init/chroma_init.cc: Added missing init of cwd.

2005-03-02 13:32  bjoo

	* lib/: actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  actions/ferm/linop/prec_dwf_linop_array_w.h,
	  actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_linop_array_w.cc,
	  actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.cc,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  init/chroma_init.cc, init/chroma_init.h, io/xmllog_io.h: Readded
	  chi.resizes but with guards

2005-03-02 11:27  bjoo

	* lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  mainprogs/tests/t_prec_nef.cc: Removed chi.resize() stuff from
	  LinopArrays

2005-03-01 21:59  edwards

	* lib/init/chroma_init.cc: Changed to using an anonymous namespace.

2005-03-01 21:58  edwards

	* lib/init/chroma_init.h: Removed redundant semi-colen.

2005-03-01 19:44  edwards

	* mainprogs/: main/apesmear.cc, main/bar3ptfn.cc,
	  main/cfgtransf.cc, main/collect_multi_propcomp.cc,
	  main/collect_propcomp.cc, main/hmc.cc, main/hypsmear.cc,
	  main/hypsmear3d.cc, main/hypsmear4d.cc, main/make_source.cc,
	  main/mres.cc, main/multi_propagator.cc,
	  main/multi_propagator_comp.cc, main/propagator.cc,
	  main/propagator_comp.cc, main/qpropadd.cc, main/qpropgfix.cc,
	  main/qproptransf.cc, main/qproptrev.cc, main/qqq_w.cc,
	  main/seqsource.cc, main/sink_smearing.cc, main/spectrum_w.cc,
	  main/stoutsmear.cc, main/wallformfac.cc, tests/t_ape_smear.cc,
	  tests/t_bicgstab.cc, tests/t_circular_buffer.cc,
	  tests/t_conslinop.cc, tests/t_disc_loop_s.cc, tests/t_dslashm.cc,
	  tests/t_dwf4d.cc, tests/t_dwflinop.cc, tests/t_dwflocality.cc,
	  tests/t_fermion_loop_w.cc, tests/t_follana_io_s.cc,
	  tests/t_follana_pion_s.cc, tests/t_formfac.cc,
	  tests/t_fuzwilp.cc, tests/t_g5eps_bj.cc, tests/t_gauge_force.cc,
	  tests/t_gfix.cc, tests/t_hamiltonian.cc, tests/t_hamsys.cc,
	  tests/t_hamsys_ferm.cc, tests/t_hmc_pg.cc, tests/t_hypsmear.cc,
	  tests/t_inline.cc, tests/t_invborici.cc,
	  tests/t_invert3_precwilson.cc, tests/t_invert4_precwilson.cc,
	  tests/t_invrelcg.cc, tests/t_io.cc, tests/t_leapfrog.cc,
	  tests/t_lower_tests.cc, tests/t_lwldslash.cc,
	  tests/t_lwldslash_pab.cc, tests/t_lwldslash_sse.cc,
	  tests/t_mesons_w.cc, tests/t_mesplq.cc, tests/t_mres_4d.cc,
	  tests/t_msumr.cc, tests/t_neflinop.cc, tests/t_ov_pbp.cc,
	  tests/t_overbu.cc, tests/t_ovlap5d_bj.cc, tests/t_ovlap_bj.cc,
	  tests/t_ovlap_double_pass.cc, tests/t_prec_contfrac.cc,
	  tests/t_prec_nef.cc, tests/t_prec_twoflav_wilson_monomial.cc,
	  tests/t_prec_wilson_force.cc, tests/t_precact.cc,
	  tests/t_precact_sse.cc, tests/t_precdwf.cc,
	  tests/t_propagator_fuzz_s.cc, tests/t_propagator_nrqcd.cc,
	  tests/t_propagator_s.cc, tests/t_propagator_twisted.cc,
	  tests/t_propagator_w.cc, tests/t_read_eigen.cc,
	  tests/t_rel_gmresr.cc, tests/t_remez.cc, tests/t_ritz.cc,
	  tests/t_ritz5d_KS.cc, tests/t_ritz_KS.cc, tests/t_spprod.cc,
	  tests/t_su3.cc, tests/t_sumr.cc,
	  tests/t_unprec_twoflav_wilson_monomial.cc,
	  tests/t_unprec_wilson_force.cc, tests/t_wilslp.cc,
	  tests/t_wlinvcg.cc: Changed to new Chroma initialize/finalize
	  format. Changed all XMLReader("DATA") to use a command-line param
	  arg.	Changed all XMLFileWriter(XMLDAT) to use the singleton
	  instance.

2005-03-01 19:42  edwards

	* lib/io/: io.h, xmllog_io.h: Removed xmllog from exposed include
	  files (used internally).  Removed unused XMLReader singletong and
	  added log writer singleton.

2005-03-01 19:41  edwards

	* lib/init/: chroma_init.cc, chroma_init.h: New init format.

2005-03-01 18:23  edwards

	* mainprogs/tests/: t_lwldslash_pab.cc, t_lwldslash_sse.cc: Added
	  global sum of times so-as to average.

2005-03-01 18:22  edwards

	* mainprogs/tests/t_prec_nef.cc: Split out the state construction.

2005-03-01 18:04  edwards

	* mainprogs/tests/t_hmc.cc: Been moved to mainprogs/main/hmc.cc

2005-03-01 14:23  edwards

	* mainprogs/tests/t_precdwf.cc: Changed to use prec zolo nef.

2005-03-01 14:18  edwards

	* mainprogs/tests/t_precdwf.cc: Some more updates.

2005-03-01 14:12  edwards

	* mainprogs/tests/t_precdwf.cc: Added a broadcast.

2005-03-01 14:09  edwards

	* mainprogs/tests/t_precdwf.cc: Added some more info.

2005-03-01 14:04  edwards

	* mainprogs/tests/t_precdwf.cc: Updated.

2005-02-28 22:50  edwards

	* mainprogs/tests/t_prec_nef.cc: More changes.

2005-02-28 21:01  edwards

	* tests/t_precact/t_prec_nef.xml.ini: Test of NEF variants.

2005-02-28 14:55  edwards

	* install_scripts/cygwin/config_chroma_scalar.sh: Added gmp args.

2005-02-28 14:43  edwards

	* mainprogs/tests/t_prec_nef.cc: New variant of NEF tester.

2005-02-28 14:43  edwards

	* mainprogs/tests/t_ldwfdslash.cc: Obsolete.

2005-02-28 14:38  edwards

	* lib/actions/ferm/linop/dwffld_w.cc: Do a resize of output arg.

2005-02-28 14:37  edwards

	* lib/actions/ferm/fermacts/: prec_nef_fermact_array_w.cc,
	  prec_nef_fermact_array_w.h: Put class params into a struct.

2005-02-28 14:36  edwards

	* tests/propagator/propagator_prec_zolo_nef_v7.xml.ini: New test
	  file.

2005-02-27 23:15  edwards

	* tests/propagator/propagator_prec_tanh_nef_v7.xml.ini: Fixed to
	  actually be v7.

2005-02-27 23:03  edwards

	* lib/meas/glue/polylp.cc: Fixed include file to point to polylp
	  instead of mesplq !!

2005-02-27 22:36  tag chroma1-19-11

2005-02-27 22:36  edwards

	* NEWS: Info on 1.19.11

2005-02-27 22:35  edwards

	* lib/meas/glue/: mesplq.cc, mesplq.h: Added wrapper around call to
	  MesPlq that prints xml.

2005-02-27 22:35  edwards

	* lib/meas/hadron/: mesons_w.cc, mesons_w.h: Fixed doxygen
	  comments.

2005-02-27 22:34  edwards

	* mainprogs/: main/apesmear.cc, main/bar3ptfn.cc,
	  main/cfgtransf.cc, main/collect_multi_propcomp.cc,
	  main/collect_propcomp.cc, main/hypsmear.cc, main/hypsmear3d.cc,
	  main/hypsmear4d.cc, main/make_source.cc, main/mres.cc,
	  main/multi_propagator.cc, main/multi_propagator_comp.cc,
	  main/propagator.cc, main/propagator_comp.cc, main/qqq_w.cc,
	  main/seqsource.cc, main/sink_smearing.cc, main/spectrum_w.cc,
	  main/stoutsmear.cc, main/wallformfac.cc, tests/t_bicgstab.cc,
	  tests/t_disc_loop_s.cc, tests/t_dwf4d.cc,
	  tests/t_fermion_loop_w.cc, tests/t_g5eps_bj.cc,
	  tests/t_invborici.cc, tests/t_invert3_precwilson.cc,
	  tests/t_invert4_precwilson.cc, tests/t_invrelcg.cc,
	  tests/t_mres_4d.cc, tests/t_msumr.cc, tests/t_ov_pbp.cc,
	  tests/t_ovlap5d_bj.cc, tests/t_ovlap_bj.cc,
	  tests/t_ovlap_double_pass.cc, tests/t_prec_contfrac.cc,
	  tests/t_prec_nef.cc, tests/t_precact.cc,
	  tests/t_propagator_fuzz_s.cc, tests/t_propagator_nrqcd.cc,
	  tests/t_propagator_s.cc, tests/t_propagator_twisted.cc,
	  tests/t_propagator_w.cc, tests/t_read_eigen.cc,
	  tests/t_rel_gmresr.cc, tests/t_ritz.cc, tests/t_ritz5d_KS.cc,
	  tests/t_ritz_KS.cc, tests/t_sumr.cc: Collapsed code surrounding
	  MesPlq call to a single sub call.

2005-02-27 20:29  tag chroma1-19-10

2005-02-27 20:29  edwards

	* NEWS: Info on 1.19.10

2005-02-27 18:10  edwards

	* mainprogs/main/: qqq_w.cc, sink_smearing.cc: Added simple check
	  the input file looks reasonable.

2005-02-27 17:48  edwards

	* tests/: qqq_w/qqq_w_v4.linux-scalar-intel.barcomp,
	  qqq_w/qqq_w_v4.linux-scalar-intel.qqq_pt,
	  qqq_w/qqq_w_v4.linux-scalar-intel.qqq_smeared,
	  qqq_w/qqq_w_v4.linux-scalar-intel.xml, qqq_w/qqq_w_v4.xml.ini,
	  sink_smearing/sink_smearing_v3.linux-scalar-intel.xml,
	  sink_smearing/sink_smearing_v3.xml.ini,
	  sink_smearing/sink_smearing_v4.linux-scalar-intel.xml,
	  sink_smearing/sink_smearing_v4.xml.ini: New sink_smear and qqq
	  format. Removed obsolete variants.

2005-02-27 17:47  edwards

	* mainprogs/main/: qqq_w.cc, sink_smearing.cc: Changed input
	  format.

2005-02-27 16:03  edwards

	* mainprogs/main/qqq_w.cc: Added support to optimize away a read if
	  the prop file names are the same.

2005-02-27 16:03  edwards

	* tests/qqq_w/: qqq_w_v4.linux-scalar-intel.barcomp,
	  qqq_w_v4.linux-scalar-intel.xml, qqq_w_v4.xml.ini: New variants
	  of input.

2005-02-27 15:35  edwards

	* tests/qqq_w/: qqq_w_v1.xml.ini, qqq_w_v2.xml.ini,
	  qqq_w_v3.linux-scalar-intel.barcomp,
	  qqq_w_v3.linux-scalar-intel.xml, qqq_w_v3.xml.ini,
	  qqq_w_v4.linux-scalar-intel.barcomp,
	  qqq_w_v4.linux-scalar-intel.xml, qqq_w_v4.xml.ini: Removed now
	  obsolete input files. New version 4 format takes an array of
	  barcomp.

2005-02-24 22:14  edwards

	* mainprogs/tests/t_ritz_KS.cc: Simplified linkage.

2005-02-24 22:01  edwards

	* lib/actions/ferm/: fermacts/unprec_dwftransf_fermact_w.cc,
	  fermacts/unprec_dwftransf_fermact_w.h,
	  linop/unprec_dwftransf_linop_w.cc,
	  linop/unprec_dwftransf_linop_w.h: Made lmdagm return a new object
	  that combines the denominators of each term (M and M^dag) into
	  one CG call.

2005-02-24 17:29  edwards

	* mainprogs/tests/t_dwf4d.cc: Simplified linkage.

2005-02-24 06:54  bjoo

	* TODO: To do list

2005-02-24 06:52  bjoo

	* lib/update/molecdyn/predictor/: mre_extrap_predictor.cc,
	  mre_extrap_predictor.h, predictor_aggregate.cc: 5D Chrono
	  Inverter

2005-02-23 22:26  tag chroma1-19-9

2005-02-23 22:26  edwards

	* NEWS: Info on 1.19.9

2005-02-23 22:15  edwards

	* lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h: Added
	  missing (re)declaration of MDSolutionPredictor()

2005-02-23 18:48  bjoo

	* TODO, lib/update/molecdyn/monomial/two_flavor_monomial5d_w.h,
	  lib/update/molecdyn/monomial/two_flavor_monomial_w.h,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/mre_extrap_predictor.h,
	  lib/update/molecdyn/predictor/predictor_aggregate.cc: Added
	  normalisation to stabilise GramSchmidt in Chrono solver. Now
	  seems to work better with the 4D test Wilson HMC. Reduces no of
	  inversions from 15-13 to 3 with 8 vectors. Worth doing, but use
	  with care in single precision (Reversibility etc). 5D
	  implementation still to do tomorrow (which is only 13 minutes
	  away

2005-02-23 17:24  bjoo

	* lib/: Makefile.am, update/molecdyn/predictor/predictor.h,
	  update/molecdyn/predictor/predictor_aggregate.cc: Minimal
	  Residual Extrapolation Predictor

2005-02-23 17:14  bjoo

	* lib/update/molecdyn/predictor/: lu_solve.cc, lu_solve.h,
	  mre_extrap_predictor.cc, mre_extrap_predictor.h, predictor.h:
	  Initial stabs at MRE Chrono predictor. An LU SSystem solver and
	  the predictor itself

2005-02-23 14:31  tag chroma1-19-8

2005-02-23 14:31  edwards

	* NEWS: Info on 1.19.8

2005-02-23 14:30  edwards

	* NEWS: Info on 1.19.9

2005-02-23 14:29  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_array_w.h,
	  fermacts/prec_wilson_fermact_w.cc,
	  fermacts/prec_wilson_fermact_w.h,
	  fermacts/unprec_dwf_fermact_array_w.h,
	  fermacts/unprec_dwftransf_fermact_w.h,
	  fermacts/unprec_wilson_fermact_w.cc,
	  fermacts/unprec_wilson_fermact_w.h, linop/prec_clover_linop_w.h,
	  linop/prec_dwf_linop_array_w.h, linop/prec_wilson_linop_w.h,
	  linop/unprec_dwf_linop_array_w.h,
	  qprop/prec_dwf_qprop_array_sse_w.h,
	  qprop/prec_fermact_qprop_array.h: Changed include of param_io.h
	  to aniso_io.h to thin-out file dependencies.

2005-02-23 14:27  edwards

	* lib/Makefile.am: Added aniso_io.{h,cc} and smearing_io.{h,cc}

2005-02-23 14:26  edwards

	* lib/io/: aniso_io.cc, aniso_io.h, io.h, param_io.cc, param_io.h,
	  qprop_io.h, smearing_io.cc, smearing_io.h: Split off AnisoParam_t
	  and SmearingParam_t to their own separate files.

2005-02-23 14:26  edwards

	* lib/actions/gauge/gaugeacts/: lw_1loop_gaugeact.cc,
	  lw_tree_gaugeact.cc, plaq_gaugeact.cc, plaq_gaugeact.h,
	  rbc_gaugeact.cc, rg_gaugeact.cc, wilson_gaugeact.cc,
	  wilson_gaugeact.h: Added aniso hooks. The force term and action
	  don't have aniso directly hooked in yet.

2005-02-23 13:30  sbasak

	* PBS/spectrum/scripts/run_complete_job.pl: 'rm -f qqq_*' changed
	  to 'rm -f qqq_*.cfg*'

2005-02-23 11:16  edwards

	* NEWS: Info on 1.19.8

2005-02-23 11:13  edwards

	* TODO: New updates.

2005-02-23 09:51  bjoo

	* lib/update/molecdyn/: monomial/abs_monomial.h,
	  monomial/gauge_monomial.h,
	  monomial/one_flavor_rat_monomial5d_w.h,
	  monomial/one_flavor_rat_monomial_w.h,
	  monomial/prec_one_flavor_rat_monomial5d_w.h,
	  monomial/prec_one_flavor_rat_monomial_w.h,
	  monomial/prec_two_flavor_monomial5d_w.cc,
	  monomial/prec_two_flavor_monomial5d_w.h,
	  monomial/prec_two_flavor_monomial_w.cc,
	  monomial/prec_two_flavor_monomial_w.h,
	  monomial/two_flavor_monomial5d_w.h,
	  monomial/two_flavor_monomial_w.h,
	  monomial/unprec_two_flavor_monomial5d_w.cc,
	  monomial/unprec_two_flavor_monomial5d_w.h,
	  monomial/unprec_two_flavor_monomial_w.cc,
	  monomial/unprec_two_flavor_monomial_w.h,
	  predictor/chrono_predictor.h,
	  predictor/last_solution_predictor.h,
	  predictor/linear_extrap_predictor.h,
	  predictor/zero_guess_predictor.h: Moved Chronology into relevant
	  getX functions. Knock on effect of having to lose const
	  qualifiers on getX and S, S_even_even, S_odd_odd functions

2005-02-22 12:11  bjoo

	* lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/util/info/proginfo.cc, mainprogs/main/propagator.cc,
	  mainprogs/tests/t_lwldslash_pab.cc: Fixed refcount in
	  lwldslash_w_pab. Should behave better now

2005-02-21 21:50  edwards

	* lib/io/param_io.cc: Removed ifdefs.

2005-02-21 21:49  edwards

	* lib/io/param_io.cc: Removed diagnostic message.

2005-02-21 21:13  edwards

	* lib/actions/ferm/qprop/: prec_dwf_qprop_array_sse_w.cc,
	  prec_dwf_qprop_array_sse_w.h: Optimize the gauge initialization
	  to the constructor.

2005-02-21 14:32  tag chroma1-19-7

2005-02-21 14:32  edwards

	* NEWS: Info on 1.19.7

2005-02-21 14:28  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/linop/lwldslash_base_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/qprop/asqtad_qprop.cc,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.h,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc, lib/io/param_io.cc,
	  lib/io/param_io.h, lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  lib/io/readszin.cc, lib/io/szin_io.cc, lib/io/szin_io.h,
	  mainprogs/main/apesmear.cc, mainprogs/main/cfgtransf.cc,
	  mainprogs/main/hypsmear.cc, mainprogs/main/hypsmear3d.cc,
	  mainprogs/main/hypsmear4d.cc, mainprogs/main/stoutsmear.cc:
	  Changed initHeader's to be instead the appropriate default
	  constructor for the ChiralParam, AnisoParam and QQQ structs.
	  Removed all calls to initHeader. Changed quarkProp routines to
	  instead take the appropriate SystemSolver instead of fermact.
	  Added AnisoParam support for DWF and SSE DWF.

2005-02-21 14:23  edwards

	* lib/syssolver.h: Added partial specialization of SystemSolver.

2005-02-21 14:21  tag chroma1-19-6

2005-02-21 14:21  edwards

	* NEWS: Info on 1.19.6

2005-02-21 12:05  sbasak

	* PBS/spectrum/scripts/run_complete_job.pl: 'rm -f' of a bunch of
	  outfiles added and a typo corrected

2005-02-21 05:31  bjoo

	* mainprogs/: main/Makefile.am, tests/Makefile.am: Moved stock
	  applications to bin_PROGRAMS

2005-02-20 23:57  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Removed debugging
	  comment.

2005-02-19 21:55  edwards

	* lib/actions/ferm/linop/: lwldslash_w_sse.cc, lwldslash_w_sse.h:
	  Split initialization of SSE wilson dslash into its own init()
	  routine.  Otherwise, I've had some really strange and seemingly
	  portable bugs.  If I allocated a field in
	  prec_dwf_linop_array_w.cc (create), it would foul up
	  dwf_quarkprop. No idea why. By splitting off the init, all the
	  low level malloc is done upon construction and the DWF code
	  seemed to work fine. Bizarre - and that took days to figure
	  out...

2005-02-19 13:05  edwards

	* TODO: More todo.

2005-02-19 12:42  edwards

	* TODO: More to do.

2005-02-19 12:38  edwards

	* TODO: More stuff.

2005-02-19 12:02  edwards

	* TODO: Laundy list.

2005-02-18 14:02  sbasak

	* PBS/spectrum/scripts/run_complete_job.pl: Perl version
	  run_complete_job.sh, but for Jlab clusters

2005-02-18 12:40  edwards

	* mainprogs/main/hmc.cc: Simplified linkage stuff.

2005-02-18 00:17  dgr

	* PBS/spectrum/: bin/parse_qqq.pl, bin/parse_qs.pl,
	  lib/Parse_groups.pm, scripts/run_complete_job.sh: Changed names
	  of propagators

2005-02-17 21:42  edwards

	* tests/propagator/propagator_v7.linux-scalar-intel.xml: Updated.

2005-02-17 21:35  edwards

	* tests/propagator/propagator_prec_dwf_v7.linux-scalar-intel.xml:
	  Updated

2005-02-16 21:55  tag chroma1-19-5

2005-02-16 21:55  edwards

	* NEWS: Info on 1.19.5

2005-02-16 21:52  edwards

	* lib/actions/ferm/linop/: chlclovms_w.b.cc, choles.cc,
	  lclovmpsim_w.cc, ldumul_w.cc, makclov_w.cc: Added start of clover
	  codes.

2005-02-16 21:52  edwards

	* lib/meas/: glue/block.cc, glue/cool.cc, glue/gluecor.cc,
	  glue/meslate.cc, glue/mesq.cc, glue/polycor.cc, glue/qactden.cc,
	  glue/qnaive.cc, glue/qtopcor.cc, glue/topol.cc,
	  schrfun/sfcurcor_w.cc, schrfun/sfpcac_w.cc,
	  smear/jacobi_smear.cc, smear/wupp_smear.cc, trln/pade_trln_w.cc,
	  trln/trln.h: Added codes from szin - not yet fully converted.

2005-02-16 21:51  edwards

	* lib/meas/glue/: glue.h, mesfield.cc, mesfield.h: Added mesfield

2005-02-16 21:51  edwards

	* lib/meas/hadron/hadron_w.h: Added hybmeson_w.h

2005-02-16 21:51  edwards

	* lib/meas/hadron/hybmeson_w.cc: Removed test error message.

2005-02-16 21:49  edwards

	* lib/Makefile.am: Added mesfield.{h,cc}

2005-02-16 21:48  edwards

	* mainprogs/main/spectrum_w.cc: Added Hybrid mesons.

2005-02-16 21:48  edwards

	* tests/spectrum_w/: spectrum_w_v11.linux-scalar-intel.xml.gz,
	  spectrum_w_v11.xml.ini: New tests for hybrids.

2005-02-16 17:22  edwards

	* mainprogs/tests/t_mres_4d.cc: Hopefully working again with new
	  singleton factories.

2005-02-16 17:22  edwards

	* tests/m_res4d/: mres4_tanh.xml.ini, mres4_zolo_nef.xml.ini: Moved
	  boundary

2005-02-16 17:21  edwards

	* mainprogs/main/mres.cc: Removed a bunch of unneeded include
	  files.

2005-02-16 15:12  sbasak

	* mainprogs/main/sink_smearing.cc: bug at Real BlkAccu = 1.0-5
	  fixed to 1.0e-5

2005-02-16 11:18  bjoo

	* lib/actions/ferm/linop/: lwldslash_w_pab.cc, lwldslash_w_pab.h:
	  Fixed refcounts on PAB Dslash

2005-02-16 05:41  bjoo

	* mainprogs/tests/: t_lwldslash_pab.cc, t_lwldslash_sse.cc: Added
	  internal broadcasts to the dslash perf tests this cures a QCDOC
	  hang and is probably good practice

2005-02-15 13:31  dgr

	* PBS/spectrum/: README, bin/parse_qqq.pl, bin/parse_qs.pl,
	  lib/Parse_groups.pm, scripts/run_complete_job.sh: Added a branch
	  to contain various PBS scripts tuned to chroma jobs.	The idea is
	  not to edit "local" changes, e.g. parameter values, in the CVS
	  repository, but rather to edit overall functional changes

2005-02-15 13:14  edwards

	* tests/bar3ptfn/: bar3ptfn_v6.linux-scalar-intel.xml,
	  bar3ptfn_v6.linux-scalar-intel.dat: Updated to new test output.

2005-02-15 12:53  edwards

	* tests/spectrum_w/spectrum_w_v10.linux-scalar-intel.xml.gz: New
	  test results.

2005-02-14 16:37  edwards

	* lib/update/molecdyn/old/: mese/ratmesferm_s.cc,
	  mese/ratmesferm_w.cc, noise/polyfrmnse_s.cc,
	  noise/polyfrmnse_w.cc, noise/ratfrmnse_s.cc,
	  noise/ratfrmnse_w.cc: Some more old stuff just for reference.

2005-02-13 21:06  tag chroma1-19-4

2005-02-13 21:06  edwards

	* NEWS: INfo on 1.19.4

2005-02-13 21:05  edwards

	* lib/: actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  io/overlap_state_info.cc: Changed all zolo fermacts (except for
	  partfrac4d) to first take ApproxMin/Max from FermionAction group.
	  If NWilsVec in StateInfo is nonzero, take ApproxMin/Max from
	  there. Now, OverlapStateInfo can be empty.

2005-02-13 21:02  edwards

	* tests/: t_hmc/t_hmc.prec_contfrac.xml.ini,
	  t_leapfrog/t_leapfrog.prec_contfrac.xml.ini,
	  t_precact/t_precact.prec_contfrac.xml.ini,
	  t_precact/t_precact.prec_dwf.xml.ini,
	  t_precact/t_precact.prec_ht_contfrac.xml.ini,
	  t_precact/t_precact.prec_zolo_nef.xml.ini: New zolo style input.

2005-02-13 21:02  edwards

	* tests/propagator/: prop_dwf_v2.linux-scalar-intel.xml,
	  prop_dwf_v2.xml.ini, propagator_ovdwf_v6.linux-scalar-intel.xml,
	  propagator_ovdwf_v6.xml.ini,
	  propagator_prec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  propagator_prec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_contfrac5d_zolo_v7.xml.ini,
	  propagator_prec_ovlap_contfrac5d_tanh_v6.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_tanh_v6.xml.ini,
	  propagator_prec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  propagator_prec_ovlap_contfrac5d_zolo_v6.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_zolo_v6.xml.ini,
	  propagator_prec_ovlap_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_zolo_v7.xml.ini,
	  propagator_prec_zolo_nef.v6.linux-scalar-intel.xml,
	  propagator_prec_zolo_nef.v6.xml.ini,
	  propagator_tanh4d_v6.linux-scalar-intel.xml,
	  propagator_tanh4d_v6.xml.ini,
	  propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  propagator_unprec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_unprec_ht_contfrac5d_zolo_v7.xml.ini,
	  propagator_unprec_ovlap_contfrac5d_tanh_v6.linux-scalar-intel.xml,
	  propagator_unprec_ovlap_contfrac5d_tanh_v6.xml.ini,
	  propagator_unprec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_unprec_tanh_nef_v7.linux-scalar-intel.xml,
	  propagator_unprec_zolo_nef.v6.linux-scalar-intel.xml,
	  propagator_unprec_zolo_nef.v6.xml.ini, propagator_v1.xml.ini,
	  propagator_v2.dwf.xml.ini, propagator_v2.linux-scalar-intel.xml,
	  propagator_v2.xml.ini, propagator_v3.linux-scalar-intel.xml,
	  propagator_v3.xml.ini, propagator_v4.linux-scalar-intel.xml,
	  propagator_v4.xml.ini, propagator_v5.linux-scalar-intel.xml,
	  propagator_v5.xml.ini, propagator_v6.linux-scalar-intel.xml,
	  propagator_v6.xml.ini, propagator_wall_v4.xml.ini,
	  propagator_wall_v4.xml.linux-scalar-intel.xml,
	  propagator_zolo4d_v5.linux-scalar-intel.xml,
	  propagator_zolo4d_v6.linux-scalar-intel.xml,
	  propagator_zolo4d_v6.xml.ini,
	  propagator_zolo5d_v5.linux-scalar-intel.xml,
	  propagator_zolo5d_v5.xml.ini, sink_smearing_v3.xml.ini: Updated
	  input files to new form of ZOLO input (approxmin and max).

2005-02-13 15:03  edwards

	* tests/t_precact/t_precact.prec_contfrac.xml.ini: Changed OverMass
	  sign.

2005-02-13 13:16  edwards

	* lib/actions/ferm/:
	  fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  linop/prec_ht_contfrac5d_linop_array_w.cc,
	  linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc: Changed all
	  contfrac codes to follow convention of +OverMass, so in Wilson
	  linop we have   Nd-OverMass like constructs.

2005-02-13 13:15  edwards

	* mainprogs/tests/t_precact.cc: Added sanity checks.

2005-02-13 00:07  edwards

	* tests/t_precact/t_precact.prec_dwf.xml.ini: Test file

2005-02-12 23:48  edwards

	* mainprogs/tests/t_precact.cc: Simplified linkage code.

2005-02-12 01:21  edwards

	* lib/actions/ferm/linop/: prec_ovlap_contfrac5d_linop_array_w.cc,
	  prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  unprec_ovlap_contfrac5d_linop_array_w.cc,
	  unprec_ovlap_contfrac5d_pv_linop_array_w.cc: Updated prec and
	  unprec contfrac5d PV to agree with Balint's notes.

2005-02-11 11:15  tag chroma1-19-3

2005-02-11 11:15  edwards

	* NEWS: Info on 1.19.3

2005-02-11 11:06  edwards

	* mainprogs/tests/t_ritz5d_KS.cc: Changes, not finished.

2005-02-11 11:04  edwards

	* mainprogs/tests/t_wilslp.cc: Added arg to wilsp call.

2005-02-10 17:22  edwards

	* lib/meas/eig/: eig_spec.cc, eig_spec_array.cc, gramschm.cc,
	  gramschm.h, gramschm_array.cc, gramschm_array.h, ritz.cc,
	  ritz_array.cc, sn_jacob.cc, sn_jacob.h, sn_jacob_array.cc,
	  sn_jacob_array.h: Added proper subsets to eigen routines.

2005-02-10 17:22  edwards

	* lib/actions/ferm/linop/: lg5eps_double_pass_w.cc, lg5eps_w.cc,
	  lovddag_double_pass_w.cc, lovddag_w.cc, lovlap_double_pass_w.cc,
	  lovlapms_w.cc: Changed all calls to GramSchm to pass the subset.

2005-02-10 13:11  edwards

	* lib/meas/glue/: wilslp.cc, wilslp.h: Made t_dir an argument.

2005-02-10 13:11  edwards

	* lib/meas/glue/fuzwilp.h: Removed extraneous ;

2005-02-10 13:05  edwards

	* install_scripts/jlab/: config_chroma_parscalar-gigE-double.sh,
	  config_chroma_parscalar-gigE.sh,
	  config_chroma_parscalar-gm-double.sh,
	  config_chroma_parscalar-gm.sh, config_chroma_scalar.sh: Made SSE
	  dwf and GNU gmp the defaults.

2005-02-10 13:03  edwards

	* lib/Makefile.am: Added inline_wilslp.{h,cc}

2005-02-10 10:50  edwards

	* lib/meas/inline/: abs_inline_measurement.h,
	  eig/inline_eigbnds.cc, eig/inline_eigbnds.h, glue/glue.h,
	  glue/inline_glue_aggregate.cc, glue/inline_plaquette.cc,
	  glue/inline_plaquette.h, glue/inline_polylp.cc,
	  glue/inline_polylp.h, glue/inline_wilslp.cc,
	  glue/inline_wilslp.h: Added wilslp inline measurement. Cleaned up
	  all inline interfaces to remove extraneous "const" in front of
	  "const unsigned".

2005-02-09 22:26  tag chroma1-19-2

2005-02-09 22:26  edwards

	* mainprogs/main/hypsmear4d.cc: Simple version that writes in
	  scidac format.

2005-02-09 22:25  edwards

	* mainprogs/main/Makefile.am: Added hypsmear4d

2005-02-09 22:22  edwards

	* NEWS: Info on 1.19.2

2005-02-09 22:17  edwards

	* mainprogs/main/hypsmear.cc: Put back in the version - which was
	  version 1.16 . This code is needed in production. So, the version
	  1.17 will be split off into its own code.

2005-02-09 22:17  edwards

	* lib/io/writeszin.cc: Changed wstat=0; to wstat=0.0;  to get
	  around a new qdp bug.

2005-02-08 08:14  bjoo

	* lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc: BUGTrack
	  done. Removed

2005-02-08 07:21  bjoo

	* lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc: BUGTrack
	  for Cygnus. Printfs added

2005-02-07 22:17  edwards

	* mainprogs/tests/Makefile.am: Added t_inline.cc

2005-02-07 22:17  edwards

	* mainprogs/tests/t_inline.cc: Test inline codes.

2005-02-07 22:17  edwards

	* tests/t_inline/t_inline.xml.ini: Test input file

2005-02-07 11:05  tag chroma1-19-1

2005-02-07 11:05  bjoo

	* lib/meas/inline/eig/inline_eig_aggregate.cc: Fixed a typo

2005-02-07 10:58  edwards

	* tests/t_hmc/t_hmc.prec_1flav_dwf.xml.ini: Added remez stuff.

2005-02-07 10:54  edwards

	* lib/meas/inline/eig/: eig.h, inline_eig_aggregate.cc,
	  inline_eigbnds.cc, inline_eigbnds.h: Eigenvalue measurements.

2005-02-07 00:26  edwards

	* mainprogs/tests/t_leapfrog.cc: Collapsed linkage to aggregators.

2005-02-06 23:18  edwards

	* NEWS: Info on 1.19.1

2005-02-06 23:16  edwards

	* mainprogs/tests/t_ritz_KS.cc: Added some comments.

2005-02-06 23:15  edwards

	* mainprogs/tests/t_hmc.cc: Collapsed linkages to monomials.

2005-02-06 23:15  edwards

	* mainprogs/main/: mres.cc, propagator.cc: Collapsed linkages to
	  using aggregators.

2005-02-06 23:14  edwards

	* lib/Makefile.am: Added various aggregators and inline eigen
	  bounds.

2005-02-06 23:12  edwards

	* lib/actions/ferm/fermacts/: fermacts_aggregate_w.cc,
	  fermacts_aggregate_w.h, fermacts_w.h: New fermion action
	  aggregators.

2005-02-06 23:12  edwards

	* lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h: Fixed
	  include guard typo.

2005-02-06 23:11  edwards

	* lib/update/molecdyn/: molecdyn.h, hamiltonian/hamiltonian.h,
	  integrator/integrator.h, monomial/monomial.h,
	  monomial/monomial_aggregate_w.cc,
	  monomial/monomial_aggregate_w.h, monomial/monomial_w.h,
	  monomial/unprec_two_flavor_monomial_w.cc, predictor/predictor.h,
	  predictor/predictor_aggregate.cc,
	  predictor/predictor_aggregate.h: Added aggregators and doxygen
	  comments.

2005-02-06 23:11  edwards

	* lib/meas/inline/: inline.h, inline_aggregate.cc,
	  inline_aggregate.h, eig/inline_eig_aggregate.cc,
	  eig/inline_eig_aggregate.h, glue/glue.h,
	  glue/inline_glue_aggregate.cc, glue/inline_glue_aggregate.h,
	  glue/inline_plaquette.h: New inline measurement support. Added
	  doxygen comments.

2005-02-06 23:10  edwards

	* lib/meas/eig/: eig_spec.cc, eig_spec.h, eig_spec_array.cc,
	  eig_spec_array.h: Changed XMLBufferWriter to XMLWriter.

2005-02-06 17:37  edwards

	* mainprogs/main/hypsmear.cc: Fixes. Removed j_decay. Not used here
	  and should not be passed to Hyp_Smear. The hypsmear3d.cc program
	  handles this stuff.

2005-02-06 14:27  edwards

	* mainprogs/tests/Makefile.am: Added t_ritz and t_ritz_KS to check
	  progs.

2005-02-06 14:15  edwards

	* tests/t_ritz/t_ritz5d_KS.xml.in: Updated to new format.

2005-02-05 22:45  edwards

	* mainprogs/tests/t_ritz_KS.cc: Cleaned up. Now runs.

2005-02-05 22:45  edwards

	* mainprogs/tests/t_ritz.cc: Cleaned up. Added highest ev.

2005-02-05 22:39  edwards

	* tests/t_ritz/t_ritz.xml.in: Updates.

2005-02-04 14:25  sbasak

	* lib/Makefile.am: hyp_smear3d included

2005-02-04 14:24  sbasak

	* lib/meas/smear/: hyp_smear3d.cc, hyp_smear3d.h, smear.h: Proper
	  header files included and certain definitions changed

2005-02-04 14:24  sbasak

	* mainprogs/main/: Makefile.am, hypsmear3d.cc: Few changes in
	  output statements

2005-02-03 17:11  sbasak

	* lib/meas/smear/hyp_smear3d.h: Header for hyp_smear3d.cc

2005-02-03 17:10  sbasak

	* lib/meas/smear/hyp_smear3d.cc: hyp smearing in spatial directions
	  involving spatial links only

2005-02-03 17:09  sbasak

	* mainprogs/main/hypsmear3d.cc: Application code for hyp smearing
	  in spatial directions using only spatial links

2005-02-03 15:29  sbasak

	* mainprogs/main/stoutsmear.cc: Application code for stout smearing
	  (only spatial directions)

2005-02-03 15:16  sbasak

	* mainprogs/main/: Makefile.am, apesmear.cc, hypsmear.cc:
	  Application file for APE smearing (only in spatial directions)

2005-02-02 23:01  tag chroma1-19-0

2005-02-02 23:01  edwards

	* aclocal.m4, configure: Induced changes.

2005-02-02 22:52  edwards

	* configure.ac: Changed to 1.19

2005-02-02 22:51  edwards

	* NEWS: Info on 1.19.0

2005-02-02 22:38  edwards

	* tests/t_hmc/: t_hmc.prec_1flav_dwf.xml.ini,
	  t_hmc.prec_1flav_wilson.xml.ini, t_hmc.prec_mixed_wilson.xml.ini:
	  New input files.

2005-02-02 22:16  edwards

	* lib/update/molecdyn/monomial/: genapprox.cc, genapprox.h,
	  one_flavor_rat_monomial5d_w.h, one_flavor_rat_monomial_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h: Hooked in Remez support. Both
	  4d and 5d appear to work!!! They pass energy conservation in
	  t_leapfrog.

2005-02-02 22:15  edwards

	* lib/Makefile.am: Added genapprox.{h,cc}

2005-02-02 22:14  edwards

	* tests/t_leapfrog/: t_leapfrog.prec_1flav_dwf.xml.ini,
	  t_leapfrog.prec_1flav_wilson.xml.ini: Added Remez controls.

2005-02-02 18:19  tag chroma1-18-9

2005-02-02 18:19  edwards

	* mainprogs/tests/t_remez.cc: Remez test code.

2005-02-02 17:49  edwards

	* NEWS: Info on 1.18.9

2005-02-02 17:47  edwards

	* lib/Makefile.am: Added missing two_flavor_rat_monomial5d_w.h

2005-02-02 17:45  edwards

	* lib/: actions/ferm/fermacts/fermacts.h, Makefile.am: Added
	  remez_coeff.h

2005-02-02 17:43  edwards

	* lib/actions/ferm/fermacts/: remez_coeff.h, remez_gmp.cc,
	  remez_gmp.h, remez_stub.h: Some small bugs fixed. Upgraded
	  interface for PFE.

2005-02-02 13:07  edwards

	* lib/Makefile.am: Added missing two_flavor_monomial5d_w.h

2005-02-02 11:28  edwards

	* mainprogs/tests/Makefile.am: Added t_remez.

2005-02-02 11:27  edwards

	* lib/actions/ferm/fermacts/: remez.h, remez_gmp.cc, remez_gmp.h,
	  remez_stub.h: Changes to remez. Looks like it is almost working.

2005-02-01 23:46  edwards

	* configure: Induced changes.

2005-02-01 23:45  edwards

	* lib/Makefile.am: Put remez_gmp.{h,cc} under BUILD_GMP_REMEZ flag.

2005-02-01 23:43  edwards

	* lib/chroma_config_internal.h.in: Now have GMP option.

2005-02-01 23:43  edwards

	* aclocal.m4: Induced changes.

2005-02-01 23:42  edwards

	* configure.ac: Added --enable-gmp

2005-02-01 18:32  edwards

	* tests/t_leapfrog/t_leapfrog.prec_1flav_dwf.xml.ini: Test file.

2005-02-01 18:29  edwards

	* INSTALL: Brought up to date.

2005-02-01 18:29  edwards

	* README: [no log message]

2005-02-01 16:24  edwards

	* lib/tpreclinop.h: First (not functional) version of time
	  preconditioner.

2005-02-01 16:23  edwards

	* lib/Makefile.am: Added bigfloat and remez files.

2005-02-01 16:23  edwards

	* lib/actions/ferm/fermacts/: bigfloat.h, fermacts.h, remez.h,
	  remez_gmp.cc, remez_gmp.h, remez_stub.h: Added remez support. Not
	  tested yet, but does compile.

2005-02-01 10:48  tag chroma1-18-8

2005-02-01 10:48  edwards

	* NEWS: Info on 1.18.8

2005-01-31 13:07  edwards

	* mainprogs/main/hmc.cc: Copy of t_hmc.cc initially.

2005-01-31 13:06  edwards

	* mainprogs/main/Makefile.am: Added hmc.cc

2005-01-31 13:02  edwards

	* lib/util/info/proginfo.cc: Small tweak.

2005-01-31 12:58  tag chroma1-18-7

2005-01-31 12:58  edwards

	* NEWS: Info on 1.18.7

2005-01-31 12:56  edwards

	* lib/util/info/proginfo.cc: Changed QDP_PACKAGE_NAME to "qdp" to
	  avoid "++" written into XML. That's apparently illegal.

2005-01-31 11:52  bjoo

	* tests/propagator/:
	  propagator_prec_ht_contfrac5d_tanh_b1c1_v7.xml.ini,
	  propagator_prec_tanh_nef_v7.xml.ini,
	  propagator_unprec_tanh_nef_v7.linux-scalar-intel.xml,
	  propagator_unprec_tanh_nef_v7.xml.ini: More .xml.ini files

2005-01-31 11:43  bjoo

	* mainprogs/tests/t_prec_contfrac.cc, mainprogs/tests/t_precact.cc,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_b1c1_v7.xml.ini,
	  tests/t_precact/t_precact.prec_zolo_nef.xml.ini: Added Qprop test
	  to t_precact

2005-01-31 11:26  tag chroma1-18-6

2005-01-31 11:26  edwards

	* NEWS: Info on 1.18.6

2005-01-31 10:17  bjoo

	* tests/propagator/:
	  propagator_prec_ht_contfrac5d_tanh_b1c1_v7.linux-scalar-intel.xml,
	  propagator_prec_ht_contfrac5d_tanh_b1c1_v7.xml.ini: Added another
	  test

2005-01-31 10:05  bjoo

	* lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_b1c1_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml:
	  Zolo NEF still buggy somewhere

2005-01-31 08:06  bjoo

	* lib/actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  mainprogs/tests/t_prec_contfrac.cc,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ht_contfrac5d_zolo_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ht_contfrac5d_tanh_v7.xml.ini,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ht_contfrac5d_zolo_v7.xml.ini:
	  Prec HT Contfrac fixed for unscaled tanh and zolotarev coeffs.
	  Qprop works. Test files added to propagator

2005-01-31 00:10  edwards

	* tests/propagator/propagator_unprec_ht_contfrac5d_tanh_v7.xml.ini:
	  More fix ups.

2005-01-31 00:02  edwards

	* tests/propagator/: propagator_prec_ht_contfrac5d_tanh_v7.xml.ini,
	  propagator_unprec_ht_contfrac5d_tanh_v7.xml.ini: Fixed to match.

2005-01-30 23:26  edwards

	* tests/propagator/propagator_prec_ht_contfrac5d_tanh_v7.xml.ini:
	  Prec ht test file.

2005-01-30 23:16  edwards

	* mainprogs/main/mres.cc: Added unprec and prec ht_contfrac.

2005-01-30 23:15  edwards

	* mainprogs/main/propagator.cc: Added prec_ht_contfrac.

2005-01-30 16:06  edwards

	* mainprogs/tests/t_hmc.cc: Added xml_out stuff.

2005-01-30 14:12  edwards

	* mainprogs/main/propagator.cc: Added some debugging output.

2005-01-28 12:32  edwards

	* lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc: Added Check
	  of N5 in init().

2005-01-28 11:48  edwards

	* tests/t_leapfrog/t_leapfrog.prec_dwf.xml.ini: Fixes.

2005-01-28 11:48  edwards

	* lib/update/molecdyn/monomial/: one_flavor_rat_monomial5d_w.h,
	  one_flavor_rat_monomial_w.h, prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial_w.cc: Fixes. Both 4d and 5d appear
	  to work in their current bogus form (the roots are not yet
	  correct).

2005-01-28 00:10  edwards

	* tests/: t_hmc/t_hmc.prec_mixed_wilson.xml.ini,
	  t_leapfrog/t_leapfrog.prec_1flav_wilson.xml.ini: One flavor
	  checks.

2005-01-28 00:10  edwards

	* tests/t_leapfrog/t_leapfrog.prec_wilson.xml.ini: Bug fix.

2005-01-28 00:10  edwards

	* mainprogs/tests/: t_hmc.cc, t_leapfrog.cc: Added 1-flavor
	  monomials.

2005-01-28 00:09  edwards

	* lib/update/molecdyn/monomial/: one_flavor_rat_monomial_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial_w.cc: Small little fixes. Mostly
	  clean up registered name.

2005-01-28 00:09  edwards

	* lib/actions/ferm/invert/minvcg_array.cc: At least now compiles.

2005-01-28 00:09  edwards

	* lib/actions/ferm/invert/minvcg.cc: Changed errant LatticeFermion
	  to template param T.

2005-01-28 00:07  edwards

	* lib/Makefile.am: Added minvcg_array.cc

2005-01-27 21:19  tag chroma1-18-5

2005-01-27 21:19  edwards

	* NEWS: Info on 1.18.5

2005-01-27 21:15  edwards

	* lib/update/molecdyn/monomial/: abs_monomial.h, monomial_w.h,
	  one_flavor_rat_monomial5d_w.h, one_flavor_rat_monomial_w.h,
	  prec_one_flavor_rat_monomial5d_w.cc,
	  prec_one_flavor_rat_monomial5d_w.h,
	  prec_one_flavor_rat_monomial_w.cc,
	  prec_one_flavor_rat_monomial_w.h,
	  prec_two_flavor_monomial5d_w.cc, prec_two_flavor_monomial5d_w.h,
	  prec_two_flavor_monomial_w.cc, prec_two_flavor_monomial_w.h,
	  prec_two_flavor_wilson5d_monomial_w.cc,
	  prec_two_flavor_wilson5d_monomial_w.h,
	  prec_two_flavor_wilson_monomial_w.cc,
	  prec_two_flavor_wilson_monomial_w.h, two_flavor_monomial5d_w.h,
	  two_flavor_monomial_w.h, unprec_one_flavor_rat_monomial5d_w.cc,
	  unprec_one_flavor_rat_monomial5d_w.h,
	  unprec_one_flavor_rat_monomial_w.cc,
	  unprec_one_flavor_rat_monomial_w.h,
	  unprec_two_flavor_monomial5d_w.cc,
	  unprec_two_flavor_monomial5d_w.h,
	  unprec_two_flavor_monomial_w.cc, unprec_two_flavor_monomial_w.h,
	  unprec_two_flavor_wilson5d_monomial_w.cc,
	  unprec_two_flavor_wilson5d_monomial_w.h,
	  unprec_two_flavor_wilson_monomial_w.cc,
	  unprec_two_flavor_wilson_monomial_w.h: Split off two flavor
	  support to its on line. Added one-flavor ratpoly support. The
	  latter needs work.

2005-01-27 21:14  edwards

	* lib/actions/ferm/invert/: invert.h, minvcg_array.cc,
	  minvcg_array.h: Added not-functional-yet  array version of
	  minvcg.

2005-01-27 21:14  edwards

	* lib/actions/ferm/invert/minvcg.h: Added doxygen header.

2005-01-27 21:13  edwards

	* lib/Makefile.am: Changed prec/unprec monomials to shorter names.
	  Added one_flavor_rat varieties.

2005-01-27 12:57  bjoo

	* lib/: Makefile.am, actions/ferm/fermacts/fermacts_w.h,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/linop/linop_w.h,
	  actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_ht_contfrac5d_linop_array_w.h: Here is
	  the prec_ht_contfrac

2005-01-26 21:11  tag chroma1-18-4

2005-01-26 21:11  edwards

	* NEWS: Info on 1.18.4

2005-01-26 13:50  edwards

	* lib/actions/ferm/fermacts/: prec_parwilson_fermact_w.cc,
	  unprec_parwilson_fermact_w.cc: Added missing	include param_io.h
	  to supply kappaToMass

2005-01-26 09:26  zbigniew

	* lib/util/info/proginfo.cc: Added a few lines to print the code
	  versions and the run date+time.  Using strftime for the latter
	  because I couldn't get the time_put<> facet to work in a stable
	  or portable way.

2005-01-26 09:22  zbigniew

	* lib/chroma_config.h: Changed the redefinition of the macros
	  produced by autoconf. The previous macro redefinitions didn't
	  work, so the info is now stored in C-strings.

2005-01-26 07:33  bjoo

	* lib/Makefile.am, lib/update/molecdyn/predictor/circular_buffer.h,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.cc,
	  lib/update/molecdyn/predictor/linear_extrap_predictor.h,
	  lib/update/molecdyn/predictor/predictor.h,
	  mainprogs/tests/t_circular_buffer.cc, mainprogs/tests/t_hmc.cc:
	  Added linear extrapolation predictor

2005-01-25 14:45  mcneile

	* tests/parwilson/: CP_PACS.config, INPUT_t_propagator_twisted.xml,
	  t_propagator_twisted.xml: This is a simple test case for the
	  twisted mass inverter.  The chroma application was compared
	  against an OLD UKQCD code.

2005-01-25 14:29  mcneile

	* lib/actions/ferm/fermacts/: prec_parwilson_fermact_w.cc,
	  unprec_parwilson_fermact_w.cc: The input routines now read kappa
	  or mass. Twisted people use kappa.

2005-01-25 11:16  bjoo

	* lib/Makefile.am, lib/update/molecdyn/predictor/circular_buffer.h,
	  lib/update/molecdyn/predictor/predictor.h,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_circular_buffer.cc: Added circular buffer
	  class, for use in chrono solvers

2005-01-24 21:19  edwards

	* lib/: actions/gauge/gaugeacts/gaugeacts.h,
	  actions/gauge/gaugeacts/rbc_gaugeact.cc,
	  actions/gauge/gaugeacts/rbc_gaugeact.h,
	  update/molecdyn/monomial/gauge_monomial.cc: Added RBCGaugeAct.
	  This is yet another RG gaugeact but follows the RBC collab.
	  conventions to simplify life by avoiding conversions from the
	  conventions used by RGGaugeAct.

2005-01-24 21:17  edwards

	* lib/Makefile.am: Added rbc_gaugeact.{h,cc}

2005-01-24 16:31  edwards

	* lib/init/chroma_init.cc: Changed default back to XMLDAT

2005-01-24 16:29  edwards

	* mainprogs/main/spectrum_w.cc: Put chromainit back in.

2005-01-24 16:23  edwards

	* mainprogs/tests/t_dwf4d.cc: Removed special SSE DWF thingy

2005-01-22 13:02  mcneile

	* mainprogs/tests/t_fermion_loop_w.cc: I have updated the code to
	  use the new inverters.

2005-01-21 12:47  edwards

	* mainprogs/tests/t_precact.cc: Added more tests.

2005-01-21 12:44  edwards

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.cc,
	  prec_dwf_linop_array_w.h, prec_nef_general_linop_array_w.cc,
	  prec_nef_general_linop_array_w.h,
	  prec_ovlap_contfrac5d_linop_array_w.cc,
	  prec_ovlap_contfrac5d_linop_array_w.h: Added optimized version of
	  deriv.

2005-01-21 12:44  edwards

	* lib/actions/ferm/linop/: unprec_nef_linop_array_w.cc,
	  unprec_nef_linop_array_w.h: Added derivative. Also an "optimized"
	  call of the deriv.

2005-01-21 01:12  edwards

	* tests/t_precact/t_precact.prec_zolo_nef.xml.ini: Prec zolo input
	  file.

2005-01-21 00:26  edwards

	* mainprogs/tests/t_precact.cc: Now operational.

2005-01-21 00:26  edwards

	* lib/actions/ferm/linop/: prec_ovlap_contfrac5d_linop_array_w.cc,
	  prec_ovlap_contfrac5d_pv_linop_array_w.cc: Bug fixes. Now the
	  deriv term seem correct.

2005-01-20 22:17  edwards

	* mainprogs/tests/t_precact.cc: New version of prec. action
	  checker.

2005-01-20 22:17  edwards

	* tests/t_precact/t_precact.prec_contfrac.xml.ini: Test file

2005-01-20 19:20  edwards

	* lib/Makefile.am: Cosmetic changes.

2005-01-20 17:51  edwards

	* lib/actions/ferm/fermacts/overlap_state.cc: Now compiles under
	  3.4 with all the bits turned on.

2005-01-20 14:35  edwards

	* lib/actions/ferm/qprop/staggered_qprop.cc: Removed unused include
	  file.

2005-01-20 14:21  edwards

	* lib/linearop.h: Improved some comments.

2005-01-20 06:50  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/chroma_config_internal.h.in,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_cps_wrapper_qprop.h,
	  lib/actions/ferm/qprop/asqtad_qprop.cc,
	  lib/actions/ferm/qprop/asqtad_qprop.h,
	  lib/actions/ferm/qprop/prec_staggered_qprop.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  mainprogs/tests/t_propagator_s.cc: Staggered CPS Wrapper added

2005-01-19 22:08  edwards

	* lib/linearop.h: Added derivUnprecLinOp.

2005-01-19 22:07  edwards

	* lib/: fermbc.h, objfactory.h: Typo fixes g++-3.4 complains about.

2005-01-19 22:07  edwards

	* lib/actions/ferm/linop/: unprec_dwf4d_linop_w.h,
	  unprec_pdwf4d_linop_w.h, unprec_ppdwf4d_linop_w.h: Typo fixes
	  that only g++-3.4 complains about.

2005-01-19 22:07  edwards

	* lib/actions/ferm/fermacts/overlap_state.cc: Commented out stuff
	  that upsets g++.

2005-01-18 22:30  edwards

	* lib/actions/ferm/linop/: prec_ovlap_contfrac5d_linop_array_w.cc,
	  prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  unprec_ovlap_contfrac5d_linop_array_w.cc,
	  unprec_ovlap_contfrac5d_pv_linop_array_w.cc: Added plus/minus
	  control around derivs. Fixed prec. PV operator.  The unprec and
	  prec operators agree now for both linop and linOpPV.

2005-01-18 22:29  edwards

	* lib/actions/ferm/fermacts/:
	  prec_ovlap_contfrac5d_fermact_array_w.cc,
	  unprec_ovlap_contfrac5d_fermact_array_w.cc: Inserted some spaces
	  in verbose output.

2005-01-17 16:08  edwards

	* lib/init/: chroma_init.cc, chroma_init.h: Changed include paths

2005-01-17 16:04  edwards

	* mainprogs/main/spectrum_w.cc: Turned off usage of chromainit and
	  finalize. Its causing segfaults.

2005-01-17 13:26  edwards

	* lib/actions/ferm/linop/: unprec_ovext_linop_array_w.cc,
	  unprec_ovext_linop_array_w.h: Bug fixes. Added deriv. Still does
	  not agree with other codes.

2005-01-17 13:25  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc: Added
	  start/end_code

2005-01-17 12:44  bjoo

	* lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc: Fixed
	  force

2005-01-16 23:00  tag chroma1-18-3

2005-01-16 23:00  edwards

	* NEWS: Info on 1.18.3

2005-01-16 22:59  edwards

	* tests/propagator/:
	  propagator_prec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  propagator_prec_zolo_nef.v6.xml.ini: Removed extraneous t_source.

2005-01-16 22:58  edwards

	* lib/update/molecdyn/monomial/:
	  prec_two_flavor_wilson5d_monomial_w.cc,
	  unprec_two_flavor_wilson5d_monomial_w.cc: Added all possible 5D
	  monomials available.

2005-01-16 22:57  edwards

	* lib/actions/ferm/:
	  fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  linop/prec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  linop/prec_ovlap_contfrac5d_pv_linop_array_w.h,
	  linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  linop/unprec_ovlap_contfrac5d_pv_linop_array_w.cc,
	  linop/unprec_ovlap_contfrac5d_pv_linop_array_w.h: Added prec and
	  unprec versions of the Pauli-Villars operator of contfrac5d.

2005-01-16 22:56  edwards

	* lib/Makefile.am: Added PV forms of unprec and prec contfrac5d.

2005-01-15 15:51  tag chroma1-18-2

2005-01-15 15:51  edwards

	* NEWS: Info on 1.18.2

2005-01-15 15:29  edwards

	* lib/actions/gauge/gaugeacts/: lw_1loop_gaugeact.cc,
	  lw_tree_gaugeact.cc: Fixed normalizations.

2005-01-15 13:21  tag chroma1-18-1

2005-01-15 13:21  edwards

	* NEWS: Info on 1.18.1

2005-01-15 07:36  bjoo

	* lib/Makefile.am: Added a few Makefile.am fixes to ensure
	  installation works

2005-01-14 15:16  tag chroma1-18-0

2005-01-14 15:16  edwards

	* NEWS: Info on 1.18.0

2005-01-14 15:14  edwards

	* configure: [no log message]

2005-01-14 15:14  edwards

	* aclocal.m4, configure: Induced changes.

2005-01-14 15:13  edwards

	* lib/chromabase.h, lib/fermact.h, lib/fermbc.h, lib/gaugeact.h,
	  lib/gaugebc.h, lib/handle.h, lib/invtype.h, lib/lib.h,
	  lib/linearop.h, lib/objfactory.h, lib/state.h, lib/syssolver.h,
	  lib/actions/boson/operator/klein_gord.cc,
	  lib/actions/boson/operator/klein_gord.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/overlap_state.cc,
	  lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/stag_fermact_s.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermbcs/simple_fermbc.h,
	  lib/actions/ferm/invert/inv_borici_w.cc,
	  lib/actions/ferm/invert/inv_borici_w.h,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.cc,
	  lib/actions/ferm/invert/inv_gmresr_cg_array.h,
	  lib/actions/ferm/invert/inv_minres_array.cc,
	  lib/actions/ferm/invert/inv_minres_array.h,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.h,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.h,
	  lib/actions/ferm/invert/inv_rel_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_sumr.h,
	  lib/actions/ferm/invert/invbicg.cc,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab.h,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/invert/invbicgstab_array.h,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1.h,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg1_array.h,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2.h,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/invert/invcg2_array.h,
	  lib/actions/ferm/invert/invcg2_timing_hacks.cc,
	  lib/actions/ferm/invert/invcg2_timing_hacks.h,
	  lib/actions/ferm/invert/invmr.cc,
	  lib/actions/ferm/invert/invmr.h,
	  lib/actions/ferm/invert/invsumr.cc,
	  lib/actions/ferm/invert/invsumr.h,
	  lib/actions/ferm/invert/minv_rel_cg.cc,
	  lib/actions/ferm/invert/minv_rel_cg.h,
	  lib/actions/ferm/invert/minv_rel_sumr.cc,
	  lib/actions/ferm/invert/minv_rel_sumr.h,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/invert/minvcg.h,
	  lib/actions/ferm/invert/minvsumr.cc,
	  lib/actions/ferm/invert/minvsumr.h,
	  lib/actions/ferm/linop/asq_dsl_s.cc,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/asqtad_dslash.h,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/asqtad_mdagm_s.h,
	  lib/actions/ferm/linop/dslash_w.h,
	  lib/actions/ferm/linop/dwffld_w.cc,
	  lib/actions/ferm/linop/dwffld_w.h,
	  lib/actions/ferm/linop/fat7_links_s.cc,
	  lib/actions/ferm/linop/improvement_terms_s.h,
	  lib/actions/ferm/linop/lDeltaLs_w.cc,
	  lib/actions/ferm/linop/lDeltaLs_w.h,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.cc,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.h,
	  lib/actions/ferm/linop/lg5eps_w.cc,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/lgherm_w.h,
	  lib/actions/ferm/linop/llincomb.h,
	  lib/actions/ferm/linop/lmdagm.h, lib/actions/ferm/linop/lopscl.h,
	  lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovddag_double_pass_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_base_w.cc,
	  lib/actions/ferm/linop/lwldslash_base_w.h,
	  lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/naik_term_s.cc,
	  lib/actions/ferm/linop/overlapbu_linop_w.h,
	  lib/actions/ferm/linop/prec_clover_linop_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/prec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_base_array_w.h,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  lib/actions/ferm/linop/unprec_ht_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  lib/actions/ferm/linop/unprec_parwilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.h,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/dwf_qpropt_w.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.h,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  lib/actions/gauge/gaugeacts/lw_1loop_gaugeact.h,
	  lib/actions/gauge/gaugeacts/lw_tree_gaugeact.h,
	  lib/actions/gauge/gaugeacts/pg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/plaq_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rect_gaugeact.h,
	  lib/actions/gauge/gaugeacts/rg_gaugeact.h,
	  lib/actions/gauge/gaugeacts/wilson_gaugeact.h,
	  lib/actions/gauge/gaugebcs/gaugebc_periodic.cc,
	  lib/actions/gauge/gaugebcs/gaugebc_schroedinger.h,
	  lib/init/chroma_init.cc, lib/init/chroma_init.h,
	  lib/io/barcomp_io.cc, lib/io/barcomp_io.h, lib/io/cppacs_io.cc,
	  lib/io/cppacs_io.h, lib/io/eigen_io.cc, lib/io/eigen_io.h,
	  lib/io/follana_io_s.cc, lib/io/follana_io_s.h,
	  lib/io/gauge_io.cc, lib/io/gauge_io.h, lib/io/hamiltonian_io.h,
	  lib/io/inline_io.cc, lib/io/inline_io.h, lib/io/kyugauge_io.cc,
	  lib/io/kyugauge_io.h, lib/io/kyuqprop_io.cc,
	  lib/io/kyuqprop_io.h, lib/io/milc_io.cc, lib/io/milc_io.h,
	  lib/io/monomial_io.cc, lib/io/monomial_io.h,
	  lib/io/overlap_state_info.cc, lib/io/overlap_state_info.h,
	  lib/io/param_io.cc, lib/io/param_io.h, lib/io/qprop_io.cc,
	  lib/io/qprop_io.h, lib/io/readcppacs.cc, lib/io/readcppacs.h,
	  lib/io/readmilc.cc, lib/io/readmilc.h, lib/io/readszin.cc,
	  lib/io/readszin.h, lib/io/readszinferm_w.cc,
	  lib/io/readszinferm_w.h, lib/io/readszinqprop_w.cc,
	  lib/io/readszinqprop_w.h, lib/io/szin_io.cc, lib/io/szin_io.h,
	  lib/io/writemilc.cc, lib/io/writemilc.h, lib/io/writeszin.cc,
	  lib/io/writeszin.h, lib/io/writeszinqprop_w.cc,
	  lib/io/writeszinqprop_w.h, lib/io/xmllog_io.h,
	  lib/io/enum_io/enum_cfgtype_io.cc,
	  lib/io/enum_io/enum_cfgtype_io.h,
	  lib/io/enum_io/enum_coeffs_io.cc,
	  lib/io/enum_io/enum_coeffs_io.h,
	  lib/io/enum_io/enum_eigenvectype_io.cc,
	  lib/io/enum_io/enum_eigenvectype_io.h,
	  lib/io/enum_io/enum_fermtype_io.cc,
	  lib/io/enum_io/enum_fermtype_io.h,
	  lib/io/enum_io/enum_gaugeacttype_io.cc,
	  lib/io/enum_io/enum_gaugeacttype_io.h,
	  lib/io/enum_io/enum_gaugebc_io.cc,
	  lib/io/enum_io/enum_gaugebc_io.h,
	  lib/io/enum_io/enum_heatbathtype_io.cc,
	  lib/io/enum_io/enum_heatbathtype_io.h,
	  lib/io/enum_io/enum_inner_solver_type_io.cc,
	  lib/io/enum_io/enum_inner_solver_type_io.h,
	  lib/io/enum_io/enum_invtype_io.cc,
	  lib/io/enum_io/enum_invtype_io.h,
	  lib/io/enum_io/enum_md_integrator_type_io.cc,
	  lib/io/enum_io/enum_md_integrator_type_io.h,
	  lib/io/enum_io/enum_proptype_io.cc,
	  lib/io/enum_io/enum_proptype_io.h,
	  lib/io/enum_io/enum_qdpvolfmt_io.cc,
	  lib/io/enum_io/enum_qdpvolfmt_io.h,
	  lib/io/enum_io/enum_seqsrctype_io.cc,
	  lib/io/enum_io/enum_seqsrctype_io.h,
	  lib/io/enum_io/enum_simplebctype_io.cc,
	  lib/io/enum_io/enum_simplebctype_io.h,
	  lib/io/enum_io/enum_srcsnktype_io.cc,
	  lib/io/enum_io/enum_srcsnktype_io.h,
	  lib/io/enum_io/enum_type_map.h,
	  lib/io/enum_io/enum_wavetype_io.cc,
	  lib/io/enum_io/enum_wavetype_io.h,
	  lib/io/enum_io/enum_wvfkind_io.cc,
	  lib/io/enum_io/enum_wvfkind_io.h,
	  lib/meas/hadron/stag_scalars_s.cc,
	  lib/meas/hadron/vector_meson_s.cc,
	  lib/meas/inline/abs_inline_measurement.h,
	  lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_plaquette.h,
	  lib/meas/inline/glue/inline_polylp.cc,
	  lib/meas/inline/glue/inline_polylp.h, lib/meas/smear/wvfkind.h,
	  lib/meas/sources/srcsnktype.h, lib/meas/sources/wavetype.h,
	  lib/update/molecdyn/field_state.h,
	  lib/update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  lib/update/molecdyn/hmc/abs_hmc.h,
	  lib/update/molecdyn/hmc/global_metropolis_accrej.h,
	  lib/update/molecdyn/hmc/lcm_hmc.h,
	  lib/update/molecdyn/integrator/abs_integrator.h,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/integrator/md_integrator_factory.h,
	  lib/update/molecdyn/monomial/abs_monomial.h,
	  lib/update/molecdyn/monomial/prec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/old/hamilton.h,
	  lib/update/molecdyn/old/hybrid.cc,
	  lib/update/molecdyn/old/hybrid.h,
	  lib/update/molecdyn/old/wils_hamsys_w.h,
	  lib/update/molecdyn/old/mese/clmesferm_w.cc,
	  lib/update/molecdyn/old/mese/mese.cc,
	  lib/update/molecdyn/old/mese/mesferm_w.cc,
	  lib/update/molecdyn/old/mese/mesmom.cc,
	  lib/update/molecdyn/old/mese/wlmesferm_w.cc,
	  lib/update/molecdyn/old/noise/frmnse_w.cc,
	  lib/update/molecdyn/old/noise/wlfrmnse_w.cc,
	  lib/update/molecdyn/old/step/camptrj.cc,
	  lib/update/molecdyn/old/step/endoftrj.cc,
	  lib/update/molecdyn/old/step/hybtrj.cc,
	  lib/update/molecdyn/old/step/interpol.cc,
	  lib/update/molecdyn/old/step/leapp.cc,
	  lib/update/molecdyn/old/step/leappmx.cc,
	  lib/update/molecdyn/old/step/leapu.cc,
	  lib/update/molecdyn/old/step/refrsh.cc,
	  lib/update/molecdyn/old/step/rhybtrj.cc,
	  lib/update/molecdyn/predictor/chrono_predictor.h,
	  lib/update/molecdyn/predictor/last_solution_predictor.cc,
	  lib/update/molecdyn/predictor/last_solution_predictor.h,
	  lib/update/molecdyn/predictor/zero_guess_predictor.cc,
	  lib/update/molecdyn/predictor/zero_guess_predictor.h,
	  lib/util/ferm/diractodr.cc, lib/util/ferm/transf.h,
	  lib/util/gauge/expmat.cc, lib/util/gauge/expsu3.cc,
	  lib/util/gauge/hotst.cc, lib/util/gauge/reunit.cc,
	  lib/util/gauge/rgauge.cc, lib/util/gauge/sun_proj.cc,
	  lib/util/gauge/unit_check.cc,
	  mainprogs/main/ExampleBuildingBlocks.cc,
	  mainprogs/main/bar3ptfn.cc, mainprogs/main/cfgtransf.cc,
	  mainprogs/main/collect_multi_propcomp.cc,
	  mainprogs/main/collect_propcomp.cc, mainprogs/main/hypsmear.cc,
	  mainprogs/main/make_source.cc, mainprogs/main/mres.cc,
	  mainprogs/main/multi_propagator.cc,
	  mainprogs/main/multi_propagator_comp.cc,
	  mainprogs/main/propagator.cc, mainprogs/main/propagator_comp.cc,
	  mainprogs/main/qpropadd.cc, mainprogs/main/qpropgfix.cc,
	  mainprogs/main/qproptransf.cc, mainprogs/main/qproptrev.cc,
	  mainprogs/main/qqq_w.cc, mainprogs/main/seqsource.cc,
	  mainprogs/main/sink_smearing.cc, mainprogs/main/spectrum_w.cc,
	  mainprogs/main/wallformfac.cc, mainprogs/tests/t_ape_smear.cc,
	  mainprogs/tests/t_bicgstab.cc, mainprogs/tests/t_conslinop.cc,
	  mainprogs/tests/t_disc_loop_s.cc, mainprogs/tests/t_dslashm.cc,
	  mainprogs/tests/t_dwf4d.cc, mainprogs/tests/t_dwflinop.cc,
	  mainprogs/tests/t_dwflocality.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_follana_io_s.cc,
	  mainprogs/tests/t_follana_pion_s.cc,
	  mainprogs/tests/t_formfac.cc, mainprogs/tests/t_fuzwilp.cc,
	  mainprogs/tests/t_g5eps_bj.cc, mainprogs/tests/t_gfix.cc,
	  mainprogs/tests/t_hamiltonian.cc, mainprogs/tests/t_hamsys.cc,
	  mainprogs/tests/t_hamsys_ferm.cc, mainprogs/tests/t_hmc.cc,
	  mainprogs/tests/t_hmc_pg.cc, mainprogs/tests/t_hypsmear.cc,
	  mainprogs/tests/t_invborici.cc,
	  mainprogs/tests/t_invert3_precwilson.cc,
	  mainprogs/tests/t_invert4_precwilson.cc,
	  mainprogs/tests/t_invrelcg.cc, mainprogs/tests/t_io.cc,
	  mainprogs/tests/t_ldwfdslash.cc, mainprogs/tests/t_leapfrog.cc,
	  mainprogs/tests/t_lower_tests.cc, mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_pab.cc,
	  mainprogs/tests/t_lwldslash_sse.cc,
	  mainprogs/tests/t_mesons_w.cc, mainprogs/tests/t_msumr.cc,
	  mainprogs/tests/t_neflinop.cc, mainprogs/tests/t_ov_pbp.cc,
	  mainprogs/tests/t_overbu.cc, mainprogs/tests/t_ovlap5d_bj.cc,
	  mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_ovlap_double_pass.cc,
	  mainprogs/tests/t_prec_contfrac.cc,
	  mainprogs/tests/t_prec_nef.cc,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_prec_wilson_force.cc,
	  mainprogs/tests/t_precact.cc, mainprogs/tests/t_precact_sse.cc,
	  mainprogs/tests/t_precdwf.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_nrqcd.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_twisted.cc,
	  mainprogs/tests/t_propagator_w.cc,
	  mainprogs/tests/t_read_eigen.cc, mainprogs/tests/t_rel_gmresr.cc,
	  mainprogs/tests/t_ritz.cc, mainprogs/tests/t_ritz5d_KS.cc,
	  mainprogs/tests/t_ritz_KS.cc, mainprogs/tests/t_spprod.cc,
	  mainprogs/tests/t_su3.cc, mainprogs/tests/t_sumr.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_wilson_force.cc,
	  mainprogs/tests/t_wilslp.cc, mainprogs/tests/t_wlinvcg.cc:
	  Removed all using namespace QDP/Chroma from lib files. The
	  library should now be 100% in the Chroma namespace. All mainprogs
	  need a using namespace Chroma.

2005-01-14 15:11  edwards

	* configure.ac: Changed to 1.18

2005-01-14 15:11  tag chroma1-17-1

2005-01-14 15:11  edwards

	* NEWS: Info on 1.17.1

2005-01-14 13:42  edwards

	* lib/meas/eig/eig_spec.cc, lib/meas/eig/eig_spec.h,
	  lib/meas/eig/eig_spec_array.cc, lib/meas/eig/eig_spec_array.h,
	  lib/meas/eig/gramschm.cc, lib/meas/eig/gramschm.h,
	  lib/meas/eig/gramschm_array.cc, lib/meas/eig/gramschm_array.h,
	  lib/meas/eig/ischiral_w.cc, lib/meas/eig/ischiral_w.h,
	  lib/meas/eig/ritz.cc, lib/meas/eig/ritz.h,
	  lib/meas/eig/ritz_array.cc, lib/meas/eig/ritz_array.h,
	  lib/meas/eig/sn_jacob.cc, lib/meas/eig/sn_jacob.h,
	  lib/meas/eig/sn_jacob_array.cc, lib/meas/eig/sn_jacob_array.h,
	  lib/meas/gfix/axgauge.cc, lib/meas/gfix/axgauge.h,
	  lib/meas/gfix/coulgauge.cc, lib/meas/gfix/grelax.cc,
	  lib/meas/gfix/grelax.h, lib/meas/gfix/polar_dec.cc,
	  lib/meas/gfix/rot_colvec.cc, lib/meas/gfix/rot_colvec.h,
	  lib/meas/glue/fuzwilp.cc, lib/meas/glue/mesplq.cc,
	  lib/meas/glue/mesplq.h, lib/meas/glue/polylp.cc,
	  lib/meas/glue/polylp.h, lib/meas/glue/wilslp.cc,
	  lib/meas/hadron/BuildingBlocks_w.cc,
	  lib/meas/hadron/BuildingBlocks_w.h, lib/meas/hadron/D_j_w.cc,
	  lib/meas/hadron/D_j_w.h, lib/meas/hadron/DjDk_w.cc,
	  lib/meas/hadron/DjDk_w.h, lib/meas/hadron/barcomp_w.cc,
	  lib/meas/hadron/barcomp_w.h, lib/meas/hadron/barhqlq_w.cc,
	  lib/meas/hadron/barhqlq_w.h, lib/meas/hadron/barseqsrc_w.cc,
	  lib/meas/hadron/barseqsrc_w.h, lib/meas/hadron/baryon_s.cc,
	  lib/meas/hadron/baryon_s.h, lib/meas/hadron/baryon_w.cc,
	  lib/meas/hadron/baryon_w.h, lib/meas/hadron/curcor2_w.cc,
	  lib/meas/hadron/curcor2_w.h, lib/meas/hadron/formfac_w.cc,
	  lib/meas/hadron/formfac_w.h, lib/meas/hadron/hadron_corr_s.h,
	  lib/meas/hadron/hybmeson_w.cc, lib/meas/hadron/hybmeson_w.h,
	  lib/meas/hadron/loops_s.h, lib/meas/hadron/loops_w.cc,
	  lib/meas/hadron/loops_w.h, lib/meas/hadron/mesons_w.cc,
	  lib/meas/hadron/mesons_w.h, lib/meas/hadron/mesonseqsrc_w.cc,
	  lib/meas/hadron/mesonseqsrc_w.h,
	  lib/meas/hadron/mesphas_follana_s.cc,
	  lib/meas/hadron/mesphas_follana_s.h,
	  lib/meas/hadron/mesphas_s.cc, lib/meas/hadron/mesphas_s.h,
	  lib/meas/hadron/pion_sing_s.cc, lib/meas/hadron/pion_sing_s.h,
	  lib/meas/hadron/pions_s.cc, lib/meas/hadron/pions_s.h,
	  lib/meas/hadron/pseudoscalar_loops_s.cc,
	  lib/meas/hadron/pseudoscalar_loops_s.h,
	  lib/meas/hadron/scalar_loops_s.cc,
	  lib/meas/hadron/scalar_loops_s.h,
	  lib/meas/hadron/seqpiontest_w.cc,
	  lib/meas/hadron/seqpiontest_w.h, lib/meas/hadron/srcfil.cc,
	  lib/meas/hadron/srcfil.h, lib/meas/hadron/srcfil_s.cc,
	  lib/meas/hadron/stag_propShift_s.cc,
	  lib/meas/hadron/stag_propShift_s.h,
	  lib/meas/hadron/stag_scalars_s.cc,
	  lib/meas/hadron/stag_scalars_s.h, lib/meas/hadron/stoch_var.cc,
	  lib/meas/hadron/stoch_var.h, lib/meas/hadron/vector_meson_s.cc,
	  lib/meas/hadron/vector_meson_s.h, lib/meas/hadron/walfil_s.cc,
	  lib/meas/hadron/walfil_s.h, lib/meas/hadron/walfil_w.cc,
	  lib/meas/hadron/walfil_w.h, lib/meas/hadron/wall_qprop_w.cc,
	  lib/meas/hadron/wall_qprop_w.h, lib/meas/hadron/walldeltaff_w.cc,
	  lib/meas/hadron/walldeltaff_w.h,
	  lib/meas/hadron/walldeltapff_w.cc,
	  lib/meas/hadron/walldeltapff_w.h, lib/meas/hadron/wallff_w.cc,
	  lib/meas/hadron/wallff_w.h, lib/meas/hadron/wallnuclff_w.cc,
	  lib/meas/hadron/wallnuclff_w.h, lib/meas/hadron/wallpionff_w.cc,
	  lib/meas/hadron/wallpionff_w.h, lib/meas/hadron/wallrhoff_w.cc,
	  lib/meas/hadron/wallrhoff_w.h, lib/meas/hadron/wallrhopiff_w.cc,
	  lib/meas/hadron/wallrhopiff_w.h, lib/meas/hadron/z2_src.cc,
	  lib/meas/hadron/z2_src.h, lib/meas/pbp/mespbg5p_w.cc,
	  lib/meas/pbp/mespbp_s.cc, lib/meas/pbp/mespbp_w.cc,
	  lib/meas/pbp/ovpbg5p_w.cc, lib/meas/pbp/pbg5p_w.cc,
	  lib/meas/pbp/stagpbp_s.cc, lib/meas/smear/ape_smear.cc,
	  lib/meas/smear/displacement.cc, lib/meas/smear/displacement.h,
	  lib/meas/smear/fuzz_smear.cc, lib/meas/smear/fuzz_smear.h,
	  lib/meas/smear/gaus_smear.cc, lib/meas/smear/gaus_smear.h,
	  lib/meas/smear/hyp_smear.cc, lib/meas/smear/laplacian.cc,
	  lib/meas/smear/laplacian.h, lib/meas/smear/sink_smear2.cc,
	  lib/meas/smear/sink_smear2.h, lib/meas/smear/stout_smear.cc,
	  lib/meas/sources/d_src_w.cc, lib/meas/sources/d_src_w.h,
	  lib/meas/sources/p_src_w.cc, lib/meas/sources/p_src_w.h,
	  lib/update/heatbath/hb_params.h, lib/update/heatbath/mciter.cc,
	  lib/update/heatbath/mciter.h, lib/update/heatbath/mciter32.cc,
	  lib/update/heatbath/mciter32.h, lib/update/heatbath/monte.cc,
	  lib/update/heatbath/monte.h,
	  lib/update/heatbath/su2_hb_update.cc,
	  lib/update/heatbath/su2_hb_update.h,
	  lib/update/heatbath/su3_hb_sweep.cc,
	  lib/update/heatbath/su3_hb_sweep.h, lib/update/heatbath/su3hb.cc,
	  lib/update/heatbath/su3hb.h, lib/update/heatbath/su3over.cc,
	  lib/update/heatbath/su3over.h, lib/update/heatbath/u_staple.cc,
	  lib/update/heatbath/u_staple.h, lib/util/ferm/diractodr.cc,
	  lib/util/ferm/diractodr.h, lib/util/ferm/gammasgn_w.cc,
	  lib/util/ferm/gammasgn_w.h, lib/util/ferm/paulitodr.cc,
	  lib/util/ferm/paulitodr.h, lib/util/ferm/tdiractodr.cc,
	  lib/util/ferm/tdiractodr.h, lib/util/ferm/transf.cc,
	  lib/util/ft/sftmom.cc, lib/util/ft/sftmom.h,
	  lib/util/gauge/eesu2.cc, lib/util/gauge/eesu2.h,
	  lib/util/gauge/eesu3.cc, lib/util/gauge/eesu3.h,
	  lib/util/gauge/eeu1.cc, lib/util/gauge/eeu1.h,
	  lib/util/gauge/expm12.cc, lib/util/gauge/expm12.h,
	  lib/util/gauge/gauge_startup.cc, lib/util/gauge/gauge_startup.h,
	  lib/util/gauge/stag_phases_s.cc, lib/util/gauge/stag_phases_s.h,
	  lib/util/gauge/su2extract.cc, lib/util/gauge/su2extract.h,
	  lib/util/gauge/su3proj.cc, lib/util/gauge/sunfill.cc,
	  lib/util/gauge/sunfill.h, lib/util/gauge/taproj.cc,
	  lib/util/gauge/taproj.h, lib/util/info/printgeom.cc,
	  lib/util/info/printgeom.h, lib/util/info/proginfo.cc,
	  lib/util/info/proginfo.h, mainprogs/tests/t_mesplq.cc: Converted
	  all lib files to be in chroma namespace.

2005-01-14 12:16  bjoo

	* lib/objfactory.h, lib/io/enum_io/enum_gaugeacttype_io.cc,
	  lib/io/enum_io/enum_gaugeacttype_io.h, mainprogs/tests/t_hmc.cc:
	  Factories now dump. Al Harts stuff is in

2005-01-14 12:03  edwards

	* mainprogs/tests/t_leapfrog.cc: Rigged to use
	  ChromaInitialize/Finalize.

2005-01-14 10:59  bjoo

	* lib/: meas/gfix/coulgauge.cc, meas/gfix/coulgauge.h,
	  meas/gfix/polar_dec.cc, meas/gfix/polar_dec.h,
	  meas/glue/fuzwilp.cc, meas/glue/fuzwilp.h,
	  meas/smear/ape_smear.cc, meas/smear/ape_smear.h,
	  meas/smear/hyp_smear.cc, meas/smear/hyp_smear.h,
	  meas/smear/stout_smear.cc, meas/smear/stout_smear.h,
	  update/molecdyn/monomial/abs_monomial.h,
	  update/molecdyn/monomial/gauge_monomial.h, util/gauge/expmat.cc,
	  util/gauge/expmat.h, util/gauge/expsu3.cc, util/gauge/expsu3.h,
	  util/gauge/hotst.cc, util/gauge/hotst.h, util/gauge/reunit.cc,
	  util/gauge/reunit.h, util/gauge/su3proj.cc, util/gauge/su3proj.h,
	  util/gauge/sun_proj.cc, util/gauge/sun_proj.h,
	  util/gauge/unit_check.cc, util/gauge/unit_check.h: Added Als
	  changes and put in lots of namespace Chroma declarations

2005-01-14 10:33  mcneile

	* lib/io/readcppacs.cc: The code does the correct byteswapping on a
	  single node.

2005-01-14 08:25  bjoo

	* lib/update/molecdyn/: hamiltonian/abs_hamiltonian.h,
	  hamiltonian/exact_hamiltonian.h, hmc/abs_hmc.h,
	  integrator/abs_integrator.h, integrator/lcm_pqp_leapfrog.cc: NOw
	  produce LOTS of XML from Monomials/HMC

2005-01-13 22:13  tag chroma1-17-0

2005-01-13 22:13  edwards

	* lib/actions/gauge/gaugeacts/pg_gaugeact.cc: Fixed sign
	  conventions.

2005-01-13 22:12  edwards

	* lib/actions/gauge/gaugeacts/rect_gaugeact.cc: Fixed sign
	  convention.

2005-01-13 21:34  edwards

	* aclocal.m4, configure: Induced changes.

2005-01-13 21:34  edwards

	* NEWS: Info on 1.17

2005-01-13 21:32  edwards

	* configure.ac: Changed to version 1.17

2005-01-13 21:28  edwards

	* mainprogs/tests/t_leapfrog.cc: Updated linkage.

2005-01-13 21:27  edwards

	* lib/actions/gauge/gaugeacts/: pg_gaugeact.cc, rect_gaugeact.cc:
	  Bug fixes. Now seems to be energy conserving under HMD
	  integration.

2005-01-13 21:26  edwards

	* lib/actions/gauge/gaugeacts/plaq_gaugeact.cc: Cosmetic changes
	  only.

2005-01-13 13:15  tag chroma-full-xml-output

2005-01-13 13:15  edwards

	* lib/util/gauge/gauge_startup.cc: Added SCIDAC format.

2005-01-13 11:50  mcneile

	* lib/Makefile.am: I have the code to read the cp-pacs
	  configuration.

2005-01-13 11:46  mcneile

	* lib/util/gauge/gauge_startup.cc: I have added an option to load
	  in cp-pacs configurations.

2005-01-13 11:43  mcneile

	* lib/io/enum_io/enum_cfgtype_io.cc: I have added a tag for CP-PACS
	  configurations.

2005-01-13 11:39  mcneile

	* lib/io/enum_io/enum_cfgtype_io.h: I have added a tag for CP-PACS
	  format.

2005-01-13 11:27  mcneile

	* lib/io/: cppacs_io.cc, cppacs_io.h: This is a checkin for Andreas
	  Juettner.  The code has been tested by reading a CP-PACS
	  cnfiguration and checking that the correct plaquette was
	  reproduced.

2005-01-13 11:25  mcneile

	* lib/io/: readcppacs.cc, readcppacs.h: This code was written by
	  Andreas Juettner.  On a linux box I have reproduced the plaquette
	  of a CP-PACS gauge configuration. I have note tested the code on
	  more than one node.

2005-01-13 11:18  bjoo

	* lib/: io/monomial_io.cc,
	  update/molecdyn/monomial/monomial_factory.h,
	  update/molecdyn/monomial/monomial_w.h,
	  update/molecdyn/monomial/unprec_two_flavor_wilson_monomial_w.h:
	  Tydiup complete. t_hmc now compiles

2005-01-13 11:10  bjoo

	* lib/: io/hamiltonian_io.h, io/monomial_io.h,
	  update/molecdyn/hamiltonian/abs_hamiltonian.h,
	  update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  update/molecdyn/hmc/abs_hmc.h,
	  update/molecdyn/hmc/global_metropolis_accrej.cc,
	  update/molecdyn/hmc/lcm_hmc.h,
	  update/molecdyn/integrator/abs_integrator.h,
	  update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  update/molecdyn/integrator/md_integrator_factory.h,
	  update/molecdyn/monomial/abs_monomial.h,
	  update/molecdyn/monomial/gauge_monomial.cc,
	  update/molecdyn/monomial/gauge_monomial.h,
	  update/molecdyn/monomial/prec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/monomial/prec_two_flavor_wilson_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_wilson_monomial_w.h,
	  update/molecdyn/monomial/unprec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/monomial/unprec_two_flavor_wilson_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_wilson_monomial_w.h,
	  update/molecdyn/predictor/chrono_predictor_factory.h,
	  update/molecdyn/predictor/last_solution_predictor.cc,
	  update/molecdyn/predictor/last_solution_predictor.h,
	  update/molecdyn/predictor/zero_guess_predictor.cc,
	  update/molecdyn/predictor/zero_guess_predictor.h: Include Paths
	  changed

2005-01-13 10:58  bjoo

	* lib/: Makefile.am, update/molecdyn/hamiltonian/hamiltonian.h,
	  update/molecdyn/hmc/hmc.h,
	  update/molecdyn/integrator/integrator.h,
	  update/molecdyn/monomial/monomial.h,
	  update/molecdyn/predictor/predictor.h: HMC Reorg Phase 2

2005-01-13 10:55  bjoo

	* lib/: Makefile.am, update/molecdyn/abs_hamiltonian.h,
	  update/molecdyn/abs_hmc.h, update/molecdyn/abs_integrator.h,
	  update/molecdyn/abs_monomial.h,
	  update/molecdyn/chrono_predictor.h,
	  update/molecdyn/chrono_predictor_factory.h,
	  update/molecdyn/exact_hamiltonian.h,
	  update/molecdyn/gauge_monomial.cc,
	  update/molecdyn/gauge_monomial.h,
	  update/molecdyn/global_metropolis_accrej.cc,
	  update/molecdyn/global_metropolis_accrej.h,
	  update/molecdyn/last_solution_predictor.cc,
	  update/molecdyn/last_solution_predictor.h,
	  update/molecdyn/lcm_hmc.h, update/molecdyn/lcm_pqp_leapfrog.cc,
	  update/molecdyn/lcm_pqp_leapfrog.h,
	  update/molecdyn/md_integrator_factory.h,
	  update/molecdyn/molecdyn.h, update/molecdyn/molecdyn_w.h,
	  update/molecdyn/monomial_factory.h,
	  update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/prec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/prec_two_flavor_wilson_monomial_w.cc,
	  update/molecdyn/prec_two_flavor_wilson_monomial_w.h,
	  update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/unprec_two_flavor_wilson_monomial_w.cc,
	  update/molecdyn/unprec_two_flavor_wilson_monomial_w.h,
	  update/molecdyn/zero_guess_predictor.cc,
	  update/molecdyn/zero_guess_predictor.h,
	  update/molecdyn/hamiltonian/abs_hamiltonian.h,
	  update/molecdyn/hamiltonian/exact_hamiltonian.h,
	  update/molecdyn/hmc/abs_hmc.h,
	  update/molecdyn/hmc/global_metropolis_accrej.cc,
	  update/molecdyn/hmc/global_metropolis_accrej.h,
	  update/molecdyn/hmc/lcm_hmc.h,
	  update/molecdyn/integrator/abs_integrator.h,
	  update/molecdyn/integrator/lcm_pqp_leapfrog.cc,
	  update/molecdyn/integrator/lcm_pqp_leapfrog.h,
	  update/molecdyn/integrator/md_integrator_factory.h,
	  update/molecdyn/monomial/abs_monomial.h,
	  update/molecdyn/monomial/gauge_monomial.cc,
	  update/molecdyn/monomial/gauge_monomial.h,
	  update/molecdyn/monomial/monomial_factory.h,
	  update/molecdyn/monomial/monomial_w.h,
	  update/molecdyn/monomial/prec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/monomial/prec_two_flavor_wilson_monomial_w.cc,
	  update/molecdyn/monomial/prec_two_flavor_wilson_monomial_w.h,
	  update/molecdyn/monomial/unprec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/monomial/unprec_two_flavor_wilson_monomial_w.cc,
	  update/molecdyn/monomial/unprec_two_flavor_wilson_monomial_w.h,
	  update/molecdyn/predictor/chrono_predictor.h,
	  update/molecdyn/predictor/chrono_predictor_factory.h,
	  update/molecdyn/predictor/last_solution_predictor.cc,
	  update/molecdyn/predictor/last_solution_predictor.h,
	  update/molecdyn/predictor/zero_guess_predictor.cc,
	  update/molecdyn/predictor/zero_guess_predictor.h: HMC Reorg Phase
	  1

2005-01-13 10:25  bjoo

	* lib/update/molecdyn/: mese/clmesferm_w.cc, mese/mese.cc,
	  mese/mesferm_w.cc, mese/mesmom.cc, mese/wlmesferm_w.cc,
	  noise/frmnse_w.cc, noise/wlfrmnse_w.cc, old/mese/clmesferm_w.cc,
	  old/mese/mese.cc, old/mese/mesferm_w.cc, old/mese/mesmom.cc,
	  old/mese/wlmesferm_w.cc, old/noise/frmnse_w.cc,
	  old/noise/wlfrmnse_w.cc, old/step/camptrj.cc,
	  old/step/endoftrj.cc, old/step/hybtrj.cc, old/step/interpol.cc,
	  old/step/leapp.cc, old/step/leappmx.cc, old/step/leapu.cc,
	  old/step/refrsh.cc, old/step/rhybtrj.cc, step/camptrj.cc,
	  step/endoftrj.cc, step/hybtrj.cc, step/interpol.cc,
	  step/leapp.cc, step/leappmx.cc, step/leapu.cc, step/refrsh.cc,
	  step/rhybtrj.cc: Moved old SZIN sources from lib/update/molecdyn
	  to lib/update/molecdyn/old

2005-01-13 10:17  bjoo

	* tests/t_hmc/: t_hmc.prec_dwf.xml.ini,
	  t_hmc.prec_parwilson.xml.ini, t_hmc.prec_wilson.xml.ini: Fixed up
	  hmc input files

2005-01-13 10:11  bjoo

	* lib/meas/inline/glue/: inline_polylp.cc, inline_polylp.h: Added
	  inline polyakov loop measurement

2005-01-13 10:10  bjoo

	* lib/Makefile.am, lib/meas/inline/glue/glue.h,
	  lib/update/molecdyn/abs_hamiltonian.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/exact_hamiltonian.h,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.h,
	  mainprogs/tests/t_hmc.cc, tests/t_hmc/t_hmc.prec_dwf.xml.ini,
	  tests/t_hmc/t_hmc.prec_wilson.xml.ini: Added and then removed
	  some logging... Logging issue awaits conversation with Robert

2005-01-13 07:40  bjoo

	* lib/Makefile.am, lib/io/inline_io.cc, lib/io/inline_io.h,
	  lib/io/io.h, lib/meas/meas.h,
	  lib/meas/inline/abs_inline_measurement.h,
	  lib/meas/inline/abs_inline_measurement_factory.h,
	  lib/meas/inline/inline.h, lib/meas/inline/glue/glue.h,
	  lib/meas/inline/glue/inline_plaquette.cc,
	  lib/meas/inline/glue/inline_plaquette.h,
	  mainprogs/tests/t_hmc.cc: Added inline measurement structure

2005-01-12 23:50  tag chroma1-16-1

2005-01-12 23:50  edwards

	* NEWS: Info on 1.16.1

2005-01-12 23:31  edwards

	* lib/: Makefile.am, update/molecdyn/gauge_monomial.cc: Added
	  lw_tree, lw_1loop, rg gaugeacts.

2005-01-12 23:30  edwards

	* lib/actions/gauge/gaugeacts/: gaugeacts.h, lw_1loop_gaugeact.cc,
	  lw_1loop_gaugeact.h, lw_tree_gaugeact.cc, lw_tree_gaugeact.h,
	  rg_gaugeact.cc, rg_gaugeact.h: New gauge acts. These are wrappers
	  (summing when appropriate) the individual monomials.

2005-01-12 23:30  edwards

	* lib/actions/gauge/gaugeacts/wilson_gaugeact.cc: Now a wrapper
	  over PlaqGaugeAct

2005-01-12 23:29  edwards

	* lib/actions/gauge/gaugeacts/wilson_gaugeact.h: Removed storing of
	  gbc, now forward it to init().

2005-01-12 21:54  tag chroma1-16-0

2005-01-12 21:54  edwards

	* NEWS: Info on 1.16.0

2005-01-12 21:52  edwards

	* aclocal.m4, configure: Induced changes.

2005-01-12 21:51  edwards

	* lib/: fermbc.h, actions/ferm/fermacts/fermacts.h,
	  actions/ferm/fermbcs/fermbcs.h, actions/ferm/invert/invert.h,
	  actions/ferm/linop/linop.h, actions/ferm/qprop/qprop.h,
	  actions/gauge/gaugeacts/pg_gaugeact.cc,
	  actions/gauge/gaugeacts/plaq_gaugeact.cc,
	  actions/gauge/gaugeacts/rect_gaugeact.cc,
	  actions/gauge/gaugeacts/wilson_gaugeact.cc,
	  actions/gauge/gaugebcs/gaugebc_aggregate.cc,
	  actions/gauge/gaugebcs/gaugebc_aggregate.h,
	  actions/gauge/gaugebcs/gaugebc_periodic.cc,
	  actions/gauge/gaugebcs/gaugebc_periodic.h,
	  actions/gauge/gaugebcs/gaugebc_schroedinger.cc,
	  actions/gauge/gaugebcs/gaugebc_simple.cc,
	  actions/gauge/gaugebcs/gaugebc_simple.h,
	  actions/gauge/gaugebcs/gaugebcs.h,
	  update/molecdyn/gauge_monomial.cc,
	  update/molecdyn/gauge_monomial.h: Split off actions/gauge into
	  actions/gauge/gaugeacts and gaugebcs.  Changed references to
	  include files.

2005-01-12 21:49  edwards

	* configure.ac: Changed to 1.16

2005-01-12 21:49  edwards

	* lib/Makefile.am: Split actions/gauge directory into
	  actions/gauge/gaugeacts and gaugebcs similar to actions/ferm.

2005-01-12 21:27  edwards

	* lib/actions/gauge/: gauge.h, gaugeacts/gaugeacts.h,
	  gaugebcs/gaugebc_aggregate.cc, gaugebcs/gaugebc_aggregate.h,
	  gaugebcs/gaugebcs.cc, gaugebcs/gaugebcs.h: More file renaming.

2005-01-12 21:02  edwards

	* lib/actions/gauge/: gaugebc_factory.h, gaugebc_periodic.cc,
	  gaugebc_periodic.h, gaugebc_schroedinger.cc,
	  gaugebc_schroedinger.h, gaugebc_simple.cc, gaugebc_simple.h,
	  gaugebcs.cc, gaugebcs.h, gaugeacts/gaugeact_factory.h,
	  gaugeacts/gaugeacts.h, gaugeacts/pg_gaugeact.cc,
	  gaugeacts/pg_gaugeact.h, gaugeacts/plaq_gaugeact.cc,
	  gaugeacts/plaq_gaugeact.h, gaugeacts/rect_gaugeact.cc,
	  gaugeacts/rect_gaugeact.h, gaugeacts/wilson_gaugeact.cc,
	  gaugeacts/wilson_gaugeact.h, gaugebcs/gaugebc_factory.h,
	  gaugebcs/gaugebc_periodic.cc, gaugebcs/gaugebc_periodic.h,
	  gaugebcs/gaugebc_schroedinger.cc,
	  gaugebcs/gaugebc_schroedinger.h, gaugebcs/gaugebc_simple.cc,
	  gaugebcs/gaugebc_simple.h, gaugebcs/gaugebcs.cc,
	  gaugebcs/gaugebcs.h: Moved into subdirs.

2005-01-12 20:57  edwards

	* lib/actions/gauge/: gaugeact_factory.h, pg_gaugeact.cc,
	  pg_gaugeact.h, plaq_gaugeact.cc, plaq_gaugeact.h,
	  rect_gaugeact.cc, rect_gaugeact.h, wilson_gaugeact.cc,
	  wilson_gaugeact.h: Moved to gaugeacts dir.

2005-01-12 20:53  tag chroma1-15-5

2005-01-12 20:53  edwards

	* NEWS: Info on 1.15.5

2005-01-12 15:03  edwards

	* lib/actions/gauge/: pg_gaugeact.cc, rect_gaugeact.cc: Bug fixes.
	  S and dsdu now are at least gauge invariant and covariant,
	  respectively.

2005-01-12 14:30  edwards

	* lib/util/gauge/: rgauge.cc, rgauge.h: Put into chroma namespace.

2005-01-12 14:29  edwards

	* mainprogs/tests/Makefile.am: Added t_gauge_force.cc

2005-01-12 14:29  edwards

	* mainprogs/tests/t_gauge_force.cc: Gauge force tester.

2005-01-12 13:56  bjoo

	* lib/update/molecdyn/abs_hmc.h, mainprogs/tests/t_hmc.cc,
	  tests/t_hmc/t_hmc.prec_dwf.xml.ini,
	  tests/t_hmc/t_hmc.prec_parwilson.xml.ini,
	  tests/t_hmc/t_hmc.prec_wilson.xml.ini: New HMC input files

2005-01-12 13:22  bjoo

	* mainprogs/tests/t_hmc.cc: Mucked about in t_hmc

2005-01-12 10:23  bjoo

	* lib/Makefile.am, lib/init/chroma_init.cc, lib/io/xmllog_io.h,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  mainprogs/main/bar3ptfn.cc, mainprogs/main/collect_propcomp.cc,
	  mainprogs/main/hypsmear.cc, mainprogs/main/make_source.cc,
	  mainprogs/main/mres.cc, mainprogs/main/propagator.cc,
	  mainprogs/main/qpropgfix.cc, mainprogs/main/qproptransf.cc,
	  mainprogs/main/qproptrev.cc, mainprogs/main/qqq_w.cc,
	  mainprogs/main/seqsource.cc, mainprogs/main/sink_smearing.cc,
	  mainprogs/main/spectrum_w.cc, mainprogs/main/wallformfac.cc,
	  mainprogs/tests/t_hmc.cc: Moved the mainprogs to use
	  ChromaInitialize and ChromaFinalize. Howver this doesnt buy us
	  much since the linkage hack cannot be properly hidden at the
	  moment (causes segfaults in propagator) and I need closure about
	  how to deal with default input streams. You do get a
	  TheXMLOutputWriter tho

2005-01-12 08:57  bjoo

	* lib/Makefile.am, lib/lib.h, lib/init/chroma_init.cc,
	  lib/init/chroma_init.h, mainprogs/tests/t_hmc.cc:
	  ChromaInitFinalize stuff added. Canonical linkage hack added

2005-01-12 07:44  bjoo

	* lib/Makefile.am, lib/io/io.h, lib/io/xmllog_io.h,
	  mainprogs/tests/t_hmc.cc: Contents of DATA file now globally
	  acceptable through TheXMLInputReader::Instance() and a global
	  XMLFileWriter is now available from
	  TheXMLOutputWriter::Instance(). Not retrofitted yet, but works in
	  t_hmc

2005-01-11 23:46  tag chroma1-15-4

2005-01-11 23:46  edwards

	* NEWS: Info on 1.15.4

2005-01-11 23:45  edwards

	* mainprogs/tests/t_hmc.cc: Simplified aggregation.

2005-01-11 23:44  edwards

	* lib/actions/gauge/: gauge.h, gaugebcs.cc, gaugebcs.h,
	  lw_gaugeact_tmp.cc, pg_gaugeact.cc, pg_gaugeact.h,
	  plaq_gaugeact.cc, plaq_gaugeact.h, rect_gaugeact.cc,
	  rect_gaugeact.h, wilson_gaugeact.cc, wilson_gaugeact.h: Added
	  plaq,rect,pg gaugeacts. Added aggregator for gaugebc's.

2005-01-11 23:44  edwards

	* lib/actions/ferm/fermbcs/: fermbcs_s.cc, fermbcs_w.cc: Changed
	  registered name be the env::name guy.

2005-01-11 23:43  edwards

	* lib/update/molecdyn/: gauge_monomial.cc, gauge_monomial.h,
	  molecdyn.h, wilson_gauge_monomial.cc, wilson_gauge_monomial.h:
	  Removed wilson_gauge_monomial in favor of generic gauge_monomial.

2005-01-11 23:43  edwards

	* lib/update/molecdyn/:
	  unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  unprec_two_flavor_wilson_ferm_monomial_w.h: Removed in favor of
	  generic unprec_two_flavor_wilson_monomial

2005-01-11 23:41  edwards

	* lib/Makefile.am: Removed wilson_gauge_monomial. Added
	  plaq,rect_pg_gaugeact classes.  Added gauge_monomial.

2005-01-11 23:39  edwards

	* tests/t_hmc/: t_hmc.prec_dwf.xml.ini,
	  t_hmc.prec_parwilson.xml.ini, t_hmc.prec_wilson.xml.ini: New
	  gauge monomial driver names.

2005-01-11 16:13  tag chroma1-15-3

2005-01-11 16:13  edwards

	* NEWS: Info on 1.15.3

2005-01-11 15:01  edwards

	* tests/t_hmc/t_hmc.prec_parwilson.xml.ini: Parity breaking wilson
	  term.

2005-01-11 14:45  edwards

	* lib/actions/ferm/linop/: prec_parwilson_linop_w.cc,
	  prec_parwilson_linop_w.h, unprec_parwilson_linop_w.cc,
	  unprec_parwilson_linop_w.h: Fixed to work. Added derivatives.

2005-01-11 14:45  edwards

	* lib/actions/ferm/fermacts/: prec_parwilson_fermact_w.cc,
	  unprec_parwilson_fermact_w.cc: Interchanged UNPREC and PREC
	  parwilson names. They were out of order.

2005-01-11 14:44  edwards

	* lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.cc: Added
	  some more debugging output.

2005-01-11 14:44  edwards

	* mainprogs/main/propagator.cc: Added unprec and prec parwilson.

2005-01-11 14:02  edwards

	* lib/actions/ferm/linop/: prec_parwilson_linop_w.cc,
	  prec_parwilson_linop_w.h: Added derivative support.

2005-01-11 14:02  edwards

	* lib/actions/ferm/linop/prec_wilson_linop_w.cc: Fixed/removed some
	  obsolete comments.

2005-01-11 13:42  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: This is a bug fix, so tha the
	  local scalar and pion operators are non-zero.

2005-01-11 11:39  bjoo

	* lib/update/molecdyn/abs_hmc.h,
	  tests/t_hmc/t_hmc.prec_dwf.xml.ini,
	  tests/t_hmc/t_hmc.prec_wilson.xml.ini: Last Guess Predictor now
	  in

2005-01-11 11:22  bjoo

	* lib/Makefile.am, lib/update/molecdyn/last_solution_predictor.cc,
	  lib/update/molecdyn/last_solution_predictor.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.cc,
	  mainprogs/tests/t_hmc.cc: Chronology now works. Have last
	  solution based guess

2005-01-11 10:28  bjoo

	* lib/Makefile.am, lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/chrono_predictor.h,
	  lib/update/molecdyn/chrono_predictor_factory.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.h,
	  lib/update/molecdyn/wilson_gauge_monomial.h,
	  lib/update/molecdyn/zero_guess_predictor.cc,
	  lib/update/molecdyn/zero_guess_predictor.h,
	  mainprogs/tests/t_hmc.cc: Added Chrono predictors into HMC
	  structure  this is not fully shaken out yet

2005-01-10 15:11  tag chroma1-15-2

2005-01-10 15:11  edwards

	* NEWS: Info on 1.15.2

2005-01-10 14:59  edwards

	* lib/update/molecdyn/molecdyn_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_monomial_w.h,
	  mainprogs/tests/t_hmc.cc: Replaced
	  two_flavor_wilson_ferm_monomial in favor of two_flavor_monomial
	  . These latter versions are drivers for all wilson-like 4D
	  actions (excluding clover because of the S_even_even
	  contribution).

2005-01-10 14:57  edwards

	* lib/update/molecdyn/: prec_two_flavor_wilson5d_monomial_w.cc,
	  unprec_two_flavor_wilson5d_monomial_w.cc: Added doxygen comments.

2005-01-10 14:55  tag chroma1-15-1

2005-01-10 14:55  edwards

	* NEWS: Info on 1.15.1

2005-01-10 14:53  edwards

	* lib/Makefile.am: Replaced
	  {un,}prec_two_flavor_wilson_ferm_mononomial.{h,cc} in favor of
	  the non "_ferm" version. This new code is a wrapper.

2005-01-10 13:17  edwards

	* lib/:
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/linop/lovddag_double_pass_w.h,
	  actions/ferm/linop/lovddag_w.h,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  meas/hadron/hadron_corr_s.h, meas/hadron/loops_s.h,
	  meas/hadron/pion_sing_s.h, meas/hadron/pions_s.h,
	  meas/hadron/pseudoscalar_loops_s.h, meas/hadron/scalar_loops_s.h,
	  meas/hadron/stag_scalars_s.h, meas/hadron/vector_meson_s.h: Clean
	  ups. Return nulls in places a return is expected. Also, made stag
	  class have virtual destructors.

2005-01-10 13:13  bjoo

	* lib/update/molecdyn/abs_hmc.h, mainprogs/tests/t_hmc.cc,
	  tests/t_hmc/t_hmc.prec_dwf.xml.ini,
	  tests/t_hmc/t_hmc.prec_wilson.xml.ini: Added control to the t_hmc

2005-01-10 11:39  mcneile

	* lib/meas/hadron/: vector_meson_s.cc, stag_scalars_s.cc: I have
	  added the call to the covariant shift.

2005-01-10 11:33  mcneile

	* lib/meas/hadron/scalar_loops_s.h: I have added hooks to make the
	  operators gauge invariant.

2005-01-10 11:29  mcneile

	* lib/meas/hadron/: loops_s.h, pseudoscalar_loops_s.h: I have added
	  code for the covariant shifts.

2005-01-09 15:15  mcneile

	* lib/meas/hadron/stag_propShift_s.h: I have moved an enum that
	  describes the different types of shifted source here

2005-01-09 14:45  mcneile

	* lib/meas/hadron/hadron_corr_s.h: I ahve moved the enum that
	  describes the type of shift elsewhere.  Other classes need to
	  access it.

2005-01-09 14:41  mcneile

	* tests/t_asqtad_prop/DISC_DATA_v2: I have updated this file
	  because the example code uses more input choices.

2005-01-09 14:38  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have cleaned up this code.
	  Many of the different option are now consistently set from the
	  input files.

2005-01-09 13:25  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have stripped out a lot of
	  dead code.  I moving all the correlator calculations to classes.
	  This simplifies this test code.

2005-01-09 10:20  mcneile

	* mainprogs/tests/Makefile.am: I have aded an example program to
	  compute the meson spectrum for twisted mass QCD

2005-01-09 10:14  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have added code so that gauge
	  invariant corrlators can be calculated.

2005-01-08 15:01  mcneile

	* mainprogs/tests/INPUT_t_propagator_twisted.xml: This is the input
	  file for the twisted mass QCD inverter. I will move it under the
	  chroma/tests directory when I am ready to put it under xmldiff.

2005-01-08 14:58  mcneile

	* mainprogs/tests/t_propagator_twisted.cc: I have cleaned up this
	  file so that data is more logically read from the input file.
	  Still not tested though.

2005-01-08 14:06  mcneile

	* mainprogs/tests/t_propagator_twisted.cc: This is an example code
	  that calls the twisted (Wilson + gamma_5 code) inverter.  This
	  code has not been tested (yet). I am checking in to keep a record
	  as I clean up the input system.  The code is currently getting
	  the same number as for the Wilson inverter.

2005-01-07 07:18  bjoo

	* tests/t_hmc/t_hmc.prec_dwf.xml.ini: Adjusted test input for DWF
	  HMC in there

2005-01-07 07:14  bjoo

	* lib/update/molecdyn/abs_hamiltonian.h,
	  lib/update/molecdyn/abs_hmc.h, lib/update/molecdyn/abs_hyb_int.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/abs_symp_updates.h,
	  lib/update/molecdyn/degen_two_flavor_ferm_hamiltonian.h,
	  lib/update/molecdyn/exact_pg_hamiltonian.h,
	  lib/update/molecdyn/ferm_hmc.h,
	  lib/update/molecdyn/ferm_leapfrog.h,
	  lib/update/molecdyn/ferm_refresh.cc,
	  lib/update/molecdyn/ferm_refresh.h,
	  lib/update/molecdyn/ferm_symp_updates.h,
	  lib/update/molecdyn/lcm_hmc.h, lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/mom_refresh.cc,
	  lib/update/molecdyn/mom_refresh.h, lib/update/molecdyn/pg_hmc.h,
	  lib/update/molecdyn/pg_leapfrog.h,
	  lib/update/molecdyn/pg_symp_updates.h,
	  lib/update/molecdyn/wilson_gauge_monomial.h,
	  mainprogs/tests/t_hamiltonian.cc, mainprogs/tests/t_hmc.cc,
	  mainprogs/tests/t_leapfrog.cc,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc: Fixed bug in
	  copy fields. Removed old files

2005-01-07 00:16  tag chroma1-15-0

2005-01-07 00:16  edwards

	* aclocal.m4, configure: Induced changes.

2005-01-07 00:09  edwards

	* NEWS: Info on 1.15.0

2005-01-07 00:04  edwards

	* lib/actions/ferm/qprop/prec_fermact_qprop_array.h: Exposed
	  version of SSEDWFQpropT

2005-01-07 00:02  edwards

	* mainprogs/tests/t_precact_sse.cc: Fixed up to test new SSE qpropT

2005-01-07 00:00  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_array_w.cc,
	  fermacts/prec_dwf_fermact_array_w.h, qprop/dwf_qpropt_w.h,
	  qprop/prec_dwf_qprop_array_sse_w.cc,
	  qprop/prec_dwf_qprop_array_sse_w.h,
	  qprop/prec_fermact_qprop_array.cc, qprop/qprop_w.h: Fixed up
	  dwf_fermact to use specialized qpropT. Now, have exposed a
	  typedef version of DWFQpropT and the optimized version is defined
	  to this if --enable-dwf-cg is on.

2005-01-06 23:59  edwards

	* configure.ac: Changed to version 1.15

2005-01-06 23:58  tag chroma1-14-3

2005-01-06 23:58  edwards

	* NEWS: Info on 1.14.3

2005-01-06 23:53  edwards

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Some debugging output
	  added.

2005-01-06 23:43  edwards

	* lib/Makefile.am: Added dwf_qpropt_w.h and
	  prec_dwf_qprop_array_w.h

2005-01-06 12:28  edwards

	* lib/meas/hadron/: loops_s.h, pion_sing_s.cc, pion_sing_s.h,
	  pseudoscalar_loops_s.cc, scalar_loops_s.cc, stag_propShift_s.cc,
	  stag_scalars_s.cc: Cleaned out includes of "chroma.h" that cause
	  spurious recompiles.

2005-01-06 11:50  edwards

	* lib/Makefile.am: Added missing pion_sing_s.{h,cc}

2005-01-06 11:17  edwards

	* tests/t_hmc/t_hmc.prec_dwf.xml.ini: Test file

2005-01-06 11:15  edwards

	* tests/propagator/: propagator_prec_dwf_v7.ini,
	  propagator_prec_dwf_v7.xml.ini: Renamed.

2005-01-06 11:14  edwards

	* tests/propagator/: propagator_ovdwf_v7.xml.ini,
	  propagator_prec_dwf_v7.ini,
	  propagator_prec_dwf_v7.linux-scalar-intel.xml: New test codes.

2005-01-06 06:21  bjoo

	* lib/Makefile.am, lib/actions/gauge/wilson_gaugeact.cc,
	  lib/update/molecdyn/abs_hamiltonian.h,
	  lib/update/molecdyn/abs_hmc.h,
	  lib/update/molecdyn/abs_integrator.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/exact_hamiltonian.h,
	  lib/update/molecdyn/global_metropolis_accrej.cc,
	  lib/update/molecdyn/global_metropolis_accrej.h,
	  lib/update/molecdyn/lcm_hmc.h,
	  lib/update/molecdyn/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_hmc.cc,
	  tests/t_hmc/t_hmc.prec_wilson.xml.ini: Added lcm_hmc.h for
	  LatticeColorMatrix HMC and t_hmc program as well as tests , but
	  need to recompile to check most recent merge hasnt done anything
	  bad

2005-01-05 22:50  edwards

	* lib/actions/ferm/qprop/: prec_dwf_qprop_array_sse_w.cc,
	  prec_dwf_qprop_array_sse_w.h: Fixes.

2005-01-05 17:03  edwards

	* lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc: Changed form
	  of constructor for string name.

2005-01-05 17:01  edwards

	* tests/propagator/:
	  propagator_prec_ovlap_contfrac5d_zolo_v7.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_zolo_v7.xml.ini,
	  propagator_unprec_ht_contfrac5d_tanh_v7.xml.ini,
	  propagator_unprec_ovext_v7.xml.ini: New test files.

2005-01-05 16:51  edwards

	*
	  lib/actions/ferm/fermacts/unprec_ht_contfrac5d_fermact_array_w.cc:
	  Fixed typo.

2005-01-05 16:44  edwards

	* mainprogs/main/propagator.cc: Added unprec_ht codes.

2005-01-05 16:44  edwards

	* lib/actions/ferm/: fermacts/fermacts_w.h,
	  fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  fermacts/unprec_ht_contfrac5d_fermact_array_w.h, linop/linop_w.h,
	  linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  linop/unprec_ht_contfrac5d_linop_array_w.h: Added
	  unprec_ht_contfrac5d	fermact and linops

2005-01-05 16:42  edwards

	* lib/Makefile.am: Added unprec_ht_contfrac5d*{h,cc}

2005-01-05 12:28  bjoo

	* lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  lib/actions/gauge/gaugebc_periodic.cc,
	  lib/actions/gauge/gaugebc_simple.cc,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.h,
	  mainprogs/tests/t_leapfrog.cc,
	  tests/t_hamiltonian/t_hamiltonian.xml.ini,
	  tests/t_leapfrog/t_leapfrog.dwf.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_dwf.xml.ini,
	  tests/t_leapfrog/t_leapfrog.prec_wilson.xml.ini,
	  tests/t_leapfrog/t_leapfrog.unprec_dwf.xml.ini,
	  tests/t_leapfrog/t_leapfrog.unprec_wilson.xml.ini,
	  tests/t_leapfrog/t_leapfrog.xml.ini: Works now

2005-01-05 11:15  bjoo

	* lib/actions/gauge/wilson_gaugeact.cc,
	  lib/update/molecdyn/abs_hamiltonian.h,
	  lib/update/molecdyn/abs_hmc.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/field_state.h,
	  lib/update/molecdyn/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  mainprogs/tests/t_leapfrog.cc,
	  tests/t_leapfrog/t_leapfrog.xml.ini: Balints changes

2005-01-05 00:39  edwards

	* lib/actions/ferm/linop/: unprec_dwftransf_linop_w.cc,
	  unprec_dwftransf_linop_w.h: Cosmetic changes.

2005-01-05 00:39  edwards

	* lib/actions/ferm/:
	  fermacts/unprec_ht_contfrac5d_fermact_array_w.cc,
	  fermacts/unprec_ht_contfrac5d_fermact_array_w.h,
	  linop/unprec_ht_contfrac5d_linop_array_w.cc,
	  linop/unprec_ht_contfrac5d_linop_array_w.h: First version.

2005-01-04 16:18  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc: Added a5
	  factor to derivative.

2005-01-04 16:17  edwards

	* lib/update/molecdyn/abs_monomial.h: Adding minus sign in dsdq in
	  5D.

2005-01-04 11:35  bjoo

	* tests/t_leapfrog/t_leapfrog.dwf.xml.ini: DWF File

2005-01-04 10:57  mcneile

	* tests/t_asqtad_prop/INPUT_t_propagator_fuzz_s: This is the new
	  input file for the t_propagator_fuzz_s.cc application program.

2005-01-04 10:57  bjoo

	* lib/update/molecdyn/: abs_hmc.h, abs_monomial.h, molecdyn.h,
	  wilson_gauge_monomial.h: Here it is

2005-01-04 10:55  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: The code now reads from
	  the correct input file.

2005-01-04 10:45  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: This noess compiles with
	  the new inverter system

2005-01-04 10:38  mcneile

	* lib/meas/hadron/stag_propShift_s.cc: These files contain the
	  symmetric and covariant shift routines.  There was an earlier
	  screwup when I tried to check these in.

2005-01-04 10:01  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have hacked the code so that
	  it compiles at leat.

2005-01-04 09:57  bjoo

	* lib/actions/gauge/wilson_gaugeact.cc,
	  lib/update/molecdyn/abs_integrator.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  mainprogs/tests/t_leapfrog.cc,
	  tests/t_leapfrog/t_leapfrog.xml.ini: MD Conserves energy when I
	  take out the factor of -1 from the force term, and divvy the
	  gauge force term by an additional factor of 2. These are probably
	  just conventionally related but it would be nice to understand
	  them

2005-01-04 09:53  mcneile

	* lib/meas/hadron/: pion_sing_s.cc, pion_sing_s.h: This version
	  just takes the pion correlators that are needed.

2005-01-04 08:39  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: This is partially merged code.
	  I added the connected part of the taste singlet pseudoscalar to
	  the code.

2005-01-04 07:15  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: Minor update because of a
	  screw up with a checkin.

2005-01-04 07:03  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have added the gauge field
	  as an argument to the staggered meson correlator routines.

2005-01-04 06:55  mcneile

	* lib/meas/hadron/: hadron_corr_s.h, hadron_s.h, pions_s.h,
	  stag_propShift_s.h, stag_scalars_s.h, vector_meson_s.h: Upadte of
	  the staggerred measurement code.

2005-01-04 06:51  mcneile

	* lib/meas/hadron/pions_s.cc: I have modified the code so that the
	  code will chose whether to do a covariant or non-covariant shift.

2005-01-04 01:55  tag chroma1-14-2

2005-01-04 01:55  edwards

	* lib/actions/ferm/linop/: prec_clover_linop_w.cc,
	  prec_clover_linop_w.h: First (not correct yet) clover support.

2005-01-04 01:53  edwards

	* lib/: fermact.h, update/molecdyn/abs_monomial.h,
	  update/molecdyn/molecdyn_w.h,
	  update/molecdyn/prec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/prec_two_flavor_wilson5d_monomial_w.h,
	  update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.cc,
	  update/molecdyn/unprec_two_flavor_wilson5d_monomial_w.h: Added
	  linOpPV back into FermAct5D hierachy. Rearranged and extended
	  Monomial support which now has a 4D and 5D branch. Abstracted
	  derivative/refresh codes. Added new monomials.

2005-01-04 01:52  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  fermacts/unprec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_ovext_fermact_array_w.h,
	  fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  linop/prec_nef_linop_array_w.cc,
	  linop/prec_ovdwf_linop_array_w.cc,
	  linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  linop/unprec_dwf_linop_array_w.cc,
	  linop/unprec_dwf_linop_array_w.h,
	  linop/unprec_nef_linop_array_w.cc,
	  linop/unprec_ovdwf_linop_array_w.cc,
	  linop/unprec_ovext_linop_array_w.cc,
	  linop/unprec_ovlap_contfrac5d_linop_array_w.cc: Made sure all
	  operations do a resize on return value.  Added LinOpPV support.

2005-01-04 01:50  edwards

	* lib/actions/gauge/gaugebc_periodic.cc: Changed debugging output.

2005-01-04 01:49  edwards

	* lib/Makefile.am: Added prec and unprec 5D 2-flavor monomials

2005-01-04 01:49  edwards

	* mainprogs/tests/t_leapfrog.cc: Added 5D monomial support.

2005-01-04 01:48  edwards

	* tests/t_leapfrog/t_leapfrog.dwf.xml.ini: New test case.

2005-01-04 01:47  edwards

	* NEWS: Info on 1.14.2

2005-01-04 01:45  tag chroma1-14-1

2005-01-04 01:45  edwards

	* NEWS: Info on 1.14.1

2005-01-03 10:36  tag chroma1-14-0

2005-01-03 10:36  edwards

	* lib/syssolver.h: System solver.

2005-01-02 23:23  edwards

	* lib/actions/ferm/linop/: prec_nef_general_linop_array_w.cc,
	  prec_nef_general_linop_array_w.h: Start of derivative support.

2005-01-02 23:10  edwards

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.cc,
	  prec_dwf_linop_array_w.h: Added derivative support.

2005-01-02 00:21  edwards

	* lib/fermact.h, lib/linearop.h,
	  lib/actions/ferm/fermacts/fermact_factory_w.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/lwldslash_base_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_dwf_linop_base_array_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_base_array_w.h,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.cc,
	  lib/actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  lib/actions/ferm/qprop/dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.h,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.h,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_qprop_array_sse_w.h,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_s.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  lib/actions/ferm/qprop/unprec_qprop_w.h,
	  lib/update/molecdyn/abs_monomial.h,
	  mainprogs/tests/t_disc_loop_s.cc, mainprogs/tests/t_dwf4d.cc,
	  mainprogs/tests/t_precact.cc, mainprogs/tests/t_propagator_s.cc:
	  Rearranged top-level fermion actions and linear operators.  The
	  deriv is pushed up much higher. This has the effect that now the
	  "P" type (conjugate momentum type) is carried around in
	  DiffFermAct4D<T,P> and below carry this "P" template param.  All
	  fermacts now have at least default deriv support (possibly Not
	  Implemented error). Made qprop and qpropT now go through factory
	  functions.

2005-01-02 00:07  edwards

	* mainprogs/main/: mres.cc, propagator.cc: Collapsed even/odd and
	  unprec decls to just a single decl.

2005-01-02 00:06  edwards

	* tests/propagator/: propagator_ovdwf_v7.linux-scalar-intel.xml,
	  propagator_ovdwf_v7.xml.ini,
	  propagator_prec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_prec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  propagator_unprec_ovlap_contfrac5d_tanh_v7.linux-scalar-intel.xml,
	  propagator_unprec_ovlap_contfrac5d_tanh_v7.xml.ini,
	  propagator_unprec_zolo_nef.v6.linux-scalar-intel.xml,
	  propagator_unprec_zolo_nef.v6.xml.ini,
	  propagator_zolo4d_v7.linux-scalar-intel.xml,
	  propagator_zolo4d_v7.xml.ini: Regression tests for version 7
	  style propagator.cc input.

2005-01-02 00:04  edwards

	* aclocal.m4, configure: Induced changes.

2005-01-02 00:02  edwards

	* lib/Makefile.am: Removed unprec_qprop_w.h and
	  prec_dwf_fermact_array_sse_w.{h,cc}.	The latter replaced with
	  prec_dwf_qprop_array_sse_w.{h,cc}

2005-01-01 23:59  edwards

	* NEWS: Info on 1.14.0

2005-01-01 23:57  edwards

	* configure.ac: Changed to version 1.14

2005-01-01 23:55  tag chroma1-13-1

2005-01-01 23:55  edwards

	* NEWS: Info on 1.13.1

2004-12-31 12:17  bjoo

	* lib/Makefile.am, lib/actions/gauge/wilson_gaugeact.cc,
	  lib/io/monomial_io.cc, lib/io/monomial_io.h,
	  lib/update/molecdyn/abs_integrator.h,
	  lib/update/molecdyn/exact_hamiltonian.h,
	  lib/update/molecdyn/lcm_pqp_leapfrog.cc,
	  lib/update/molecdyn/lcm_pqp_leapfrog.h,
	  lib/update/molecdyn/md_integrator_factory.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/monomial_factory.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/wilson_gauge_monomial.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_leapfrog.cc,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc,
	  tests/prec_twoflav_wilson_monomial/t_prec_twoflav_wilson_monomial.xml.ini,
	  tests/t_leapfrog/t_leapfrog.xml.ini,
	  tests/unprec_twoflav_wilson_monomial/t_unprec_twoflav_wilson_monomial.xml.ini:
	  Added in basic leapfrog idea with test program

2004-12-30 09:56  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: I have cleaned up this
	  file a bit.

2004-12-30 07:27  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: To test the new gauge
	  invariant operators I have made more of the options in the code
	  controllable by the input file. At some stage somee of the Io
	  routines might get replaced by some of Balint's enum technology.

2004-12-30 06:14  bjoo

	* lib/Makefile.am, lib/io/hamiltonian_io.cc,
	  lib/io/hamiltonian_io.h, lib/io/io.h, lib/io/monomial_io.cc,
	  lib/io/monomial_io.h, lib/update/molecdyn/abs_hamiltonian.h,
	  lib/update/molecdyn/exact_hamiltonian.h,
	  lib/update/molecdyn/molecdyn.h,
	  lib/update/molecdyn/wilson_gauge_monomial.cc,
	  lib/update/molecdyn/wilson_gauge_monomial.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_hamiltonian.cc,
	  tests/t_hamiltonian/t_hamiltonian.xml.ini: Added Hamiltonian
	  stuff

2004-12-30 05:29  bjoo

	* lib/: Makefile.am, fermbc.h, gaugeact.h, gaugebc.h,
	  actions/gauge/gauge.h, actions/gauge/gaugeact_factory.h,
	  actions/gauge/gaugebc_factory.h,
	  actions/gauge/gaugebc_periodic.cc,
	  actions/gauge/gaugebc_periodic.h,
	  actions/gauge/gaugebc_schroedinger.cc,
	  actions/gauge/gaugebc_schroedinger.h,
	  actions/gauge/gaugebc_simple.cc, actions/gauge/gaugebc_simple.h,
	  actions/gauge/wilson_gaugeact.cc,
	  actions/gauge/wilson_gaugeact.h, io/gaugeact_io.cc,
	  io/gaugeact_io.h, io/gaugebc_io.cc, io/gaugebc_io.h, io/mc_io.cc,
	  io/mc_io.h, io/md_io.cc, io/md_io.h, io/pg_hmc_io.cc,
	  io/pg_hmc_io.h, io/wilson_gaugeact_io.cc,
	  io/wilson_gaugeact_io.h, util/gauge/gaugeact_utils.cc,
	  util/gauge/gaugeact_utils.h, util/gauge/gaugebc_utils.cc,
	  util/gauge/gaugebc_utils.h: Merged in new GaugeBC stuff. Removed
	  MD_io etc etc

2004-12-29 21:03  edwards

	* lib/update/molecdyn/monomial_factory.h: Changed Doxygen comment.

2004-12-29 20:48  tag chroma1-13-0

2004-12-29 20:48  edwards

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.h: Prototypes.

2004-12-29 17:14  edwards

	* NEWS: Info on 1.13.0

2004-12-29 17:13  edwards

	* lib/: fermact.h, actions/ferm/fermacts/fermact_factory_w.h,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.h,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_kno_fermact_array_w.h,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  actions/ferm/qprop/fermact_qprop.cc,
	  actions/ferm/qprop/fermact_qprop_array.cc,
	  actions/ferm/qprop/nef_quarkprop4_w.cc,
	  actions/ferm/qprop/nef_quarkprop4_w.h,
	  actions/ferm/qprop/prec_fermact_qprop.cc,
	  actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  actions/ferm/qprop/qprop.h, actions/ferm/qprop/qprop_w.h,
	  actions/ferm/qprop/quarkprop4_multi_w.cc,
	  actions/ferm/qprop/quarkprop4_w.cc,
	  actions/ferm/qprop/quarkprop4_w.h: Rearranged the top-level
	  FermionAction structure. Moved up 5d-style actions to be a
	  FermAct5D and there is a FermAct4D.  Consolidated quarkprop
	  routines and fermact factories.

2004-12-29 17:12  edwards

	* lib/actions/ferm/qprop/: quarkprop4_s.cc, quarkprop4_s.h:
	  Staggered quarkprop support.

2004-12-29 17:10  edwards

	* lib/chromabase.h: Removed BaseType. Added PropTypeTraits.

2004-12-29 17:09  edwards

	* lib/update/molecdyn/: abs_monomial.h,
	  prec_two_flavor_wilson_ferm_monomial_w.cc,
	  unprec_two_flavor_wilson_ferm_monomial_w.cc: Changed factory
	  names.

2004-12-29 17:08  edwards

	* lib/util/ferm/: transf.cc, transf.h: Added Staggered support.

2004-12-29 17:08  edwards

	* mainprogs/: main/mres.cc, main/propagator.cc,
	  tests/t_disc_loop_s.cc, tests/t_dwf4d.cc,
	  tests/t_propagator_s.cc: Fixed to compile with new factories.

2004-12-29 17:06  edwards

	* aclocal.m4, lib/chroma_config.h, configure: Induced changes.

2004-12-29 17:05  edwards

	* mainprogs/tests/Makefile.am: Added t_disc_loop and t_propagator_s
	  to make CHECK list.

2004-12-29 17:04  edwards

	* lib/Makefile.am: Added quarkprop4_{s,w}.{h,cc} routines. Added
	  dwf_quarkprop4_w.h and nef_quarkprop4_w.h again.

2004-12-29 17:03  edwards

	* configure.ac: Changed to 1.13

2004-12-29 17:02  tag chroma1-12-1

2004-12-29 17:02  edwards

	* NEWS: Info on 1.12.1

2004-12-29 13:38  bjoo

	* lib/Makefile.am, lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/molecdyn.h, lib/update/molecdyn/molecdyn_w.h,
	  lib/update/molecdyn/monomial_factory.h,
	  lib/update/molecdyn/monomial_factory_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.h,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc: Merging
	  FermMonomial Changes

2004-12-28 14:49  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc: Added
	  backwards compatibility to read some old FermionAction style
	  input with the ChiralParam group.

2004-12-26 17:53  tag chroma1-12-0

2004-12-26 17:53  edwards

	* install_scripts/cygwin/config_chroma_scalar.sh: Removed
	  enable-dwf-cg flag

2004-12-24 09:10  edwards

	* lib/update/molecdyn/old/: clovdsduf_w.cc, dsdu.cc, dsduf_s.cc,
	  dsduf_w.cc, hybrid.cc, ovdsduf_w.cc, polydsduf_s.cc,
	  polydsduf_w.cc, ratdsduf_s.cc, ratdsduf_w.cc, stdsduf_s.cc,
	  triacntr_w.cc, wldsduf_w.cc, wlhdsduf_w.cc: Converted szin files
	  for reference purposes only.

2004-12-23 23:31  edwards

	* NEWS: Info on 1.12.0

2004-12-23 23:26  edwards

	* configure.ac: Changed to version 1.12

2004-12-23 23:25  edwards

	* lib/fermbc.h, aclocal.m4, configure: Induced changes.

2004-12-23 23:25  edwards

	* lib/update/molecdyn/: prec_two_flavor_wilson_ferm_monomial_w.cc,
	  unprec_two_flavor_wilson_ferm_monomial_w.cc: Removed FermBC from
	  factory calls.

2004-12-23 23:24  edwards

	* lib/io/: eigen_io.cc, eigen_io.h, qprop_io.cc, qprop_io.h:
	  Removed boundary as an explicit member of Chroma{,Multi}Prop
	  structs.  For backwards compatibility, the boundary from old
	  versions on input will be stuffed onto the fermact string.

2004-12-23 23:23  edwards

	* lib/actions/ferm/: fermacts/fermact_factory_w.h,
	  fermacts/fermacts_w.h, fermacts/fermfactory_w.h,
	  fermacts/ovlap_partfrac4d_fermact_w.cc,
	  fermacts/ovlap_partfrac4d_fermact_w.h,
	  fermacts/prec_clover_fermact_w.cc,
	  fermacts/prec_dwf_fermact_array_sse_w.cc,
	  fermacts/prec_dwf_fermact_array_sse_w.h,
	  fermacts/prec_dwf_fermact_array_w.cc,
	  fermacts/prec_kno_fermact_array_w.cc,
	  fermacts/prec_kno_fermact_array_w.h,
	  fermacts/prec_nef_fermact_array_w.cc,
	  fermacts/prec_nef_fermact_array_w.h,
	  fermacts/prec_ovdwf_fermact_array_w.cc,
	  fermacts/prec_ovdwf_fermact_array_w.h,
	  fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  fermacts/prec_parwilson_fermact_w.cc,
	  fermacts/prec_parwilson_fermact_w.h,
	  fermacts/prec_wilson_fermact_w.cc,
	  fermacts/prec_wilson_fermact_w.h,
	  fermacts/prec_zolo_nef_fermact_array_w.cc,
	  fermacts/prec_zolo_nef_fermact_array_w.h,
	  fermacts/unprec_clover_fermact_w.cc,
	  fermacts/unprec_clover_fermact_w.h,
	  fermacts/unprec_dwf_fermact_array_w.cc,
	  fermacts/unprec_dwf_fermact_array_w.h,
	  fermacts/unprec_dwftransf_fermact_w.cc,
	  fermacts/unprec_dwftransf_fermact_w.h,
	  fermacts/unprec_nef_fermact_array_w.cc,
	  fermacts/unprec_nef_fermact_array_w.h,
	  fermacts/unprec_ovdwf_fermact_array_w.cc,
	  fermacts/unprec_ovdwf_fermact_array_w.h,
	  fermacts/unprec_ovext_fermact_array_w.cc,
	  fermacts/unprec_ovext_fermact_array_w.h,
	  fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  fermacts/unprec_parwilson_fermact_w.cc,
	  fermacts/unprec_parwilson_fermact_w.h,
	  fermacts/unprec_wilson_fermact_w.cc,
	  fermacts/unprec_wilson_fermact_w.h,
	  fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  fermacts/unprec_zolo_nef_fermact_array_w.h,
	  fermbcs/fermbc_factory_s.h, fermbcs/fermbc_factory_w.h,
	  fermbcs/fermbcs.h, fermbcs/fermbcs_s.cc, fermbcs/fermbcs_s.h,
	  fermbcs/fermbcs_w.cc, fermbcs/fermbcs_w.h,
	  fermbcs/simple_fermbc.cc, fermbcs/simple_fermbc.h,
	  fermbcs/simple_fermbc_s.cc, fermbcs/simple_fermbc_s.h,
	  fermbcs/simple_fermbc_w.cc, fermbcs/simple_fermbc_w.h: Removed
	  explicit FermBC arg to FermAct factory function callbacks.  Now,
	  the call backs create the FermBC from its own FermBC factory.

2004-12-23 23:21  edwards

	* lib/actions/ferm/ferm.h: Added fermbc.h

2004-12-23 23:20  edwards

	* lib/Makefile.am: Added actions/ferm/fermbcs files.

2004-12-23 23:19  edwards

	* mainprogs/: main/collect_multi_propcomp.cc,
	  main/collect_propcomp.cc, main/mres.cc, main/multi_propagator.cc,
	  main/multi_propagator_comp.cc, main/propagator.cc,
	  main/qpropadd.cc, main/qqq_w.cc, main/seqsource.cc,
	  main/sink_smearing.cc, main/spectrum_w.cc, main/wallformfac.cc,
	  tests/t_dwf4d.cc, tests/t_mres_4d.cc,
	  tests/t_prec_twoflav_wilson_monomial.cc,
	  tests/t_unprec_twoflav_wilson_monomial.cc: Removed explict FermBC
	  args to FermAct factory functions.

2004-12-23 23:18  edwards

	* tests/propagator/: propagator_v7.linux-scalar-intel.xml,
	  propagator_v7.xml.ini: Version 7 input/output format.

2004-12-23 23:17  edwards

	* NEWS: Info on 1.11.3

2004-12-23 17:49  edwards

	* mainprogs/tests/t_disc_loop_s.cc: Changed EvenOddLinOp to
	  EvenOddLinOpBase to compile.

2004-12-23 17:45  edwards

	* lib/meas/hadron/pseudoscalar_loops_s.h: Changed include to a more
	  specific version to avoid spurious recompiles.

2004-12-23 09:55  bjoo

	* lib/update/molecdyn/monomial_factory_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.h,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc,
	  tests/prec_twoflav_wilson_monomial/t_prec_twoflav_wilson_monomial.xml.ini,
	  tests/unprec_twoflav_wilson_monomial/t_unprec_twoflav_wilson_monomial.xml.ini:
	  Moved boundaries into monomials

2004-12-22 21:43  tag chroma1-11-2

2004-12-22 21:43  edwards

	* NEWS: Info on 1.11.2

2004-12-22 14:28  edwards

	* lib/actions/gauge/: lw_gaugeact_tmp.cc, wilson_gaugeact_tmp.cc:
	  Renamed wilson_tmp to lw_tmp.

2004-12-22 14:27  edwards

	* lib/actions/gauge/wilson_gaugeact_tmp.cc: First cut at dsdu for
	  1-loop LW glue.

2004-12-21 15:23  edwards

	* lib/util/gauge/: gauge_startup.cc, hotst.cc, hotst.h: Added
	  resize of pass in U field.

2004-12-21 13:02  bjoo

	*
	  tests/prec_twoflav_wilson_monomial/t_prec_twoflav_wilson_monomial.xml.ini:
	  And the preconditioned test input too

2004-12-21 13:01  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/molecdyn_w.h,
	  lib/update/molecdyn/monomial_factory_w.h,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/prec_two_flavor_wilson_ferm_monomial_w.h,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_prec_twoflav_wilson_monomial.cc: And the
	  preconditioned monomials too

2004-12-21 10:42  bjoo

	* lib/Makefile.am, lib/io/param_io.cc, lib/io/param_io.h,
	  lib/update/field_state.h, lib/update/update.h,
	  lib/update/molecdyn/abs_hamiltonian.h,
	  lib/update/molecdyn/abs_monomial.h,
	  lib/update/molecdyn/ferm_refresh.cc,
	  lib/update/molecdyn/field_state.h,
	  lib/update/molecdyn/molecdyn.h, lib/update/molecdyn/molecdyn_w.h,
	  lib/update/molecdyn/monomial_factory_w.h,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.cc,
	  lib/update/molecdyn/unprec_two_flavor_wilson_ferm_monomial_w.h,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_unprec_twoflav_wilson_monomial.cc,
	  tests/unprec_twoflav_wilson_monomial/t_unprec_twoflav_wilson_monomial.xml.ini:
	  Two Flavor Unprec Wilson Monomial done

2004-12-19 22:59  edwards

	* lib/actions/ferm/linop/: lwldslash_base_w.cc, lwldslash_base_w.h,
	  lwldslash_w.cc, lwldslash_w.h, lwldslash_w_pab.cc,
	  lwldslash_w_pab.h, lwldslash_w_sse.cc, lwldslash_w_sse.h: Added
	  lwldslash_base_w.{h,cc}. Moved common derivative code to this
	  base class. Otherwise, it serves not other purpose.

2004-12-19 22:56  edwards

	* lib/Makefile.am: Added lwldslash_base_w.{h,cc}

2004-12-19 10:28  mcneile

	* tests/t_asqtad_prop/: t_disc_loop_s.xml,
	  t_disc_loop_s_METRIC.xml: These are files that test the connected
	  part of the main program for disconnected loops.

2004-12-19 10:25  mcneile

	* scripts/run_xmldiff.pl: I have addded some tests for the
	  connected correlators computed by this code.

2004-12-19 09:29  mcneile

	* lib/meas/hadron/: pion_sing_s.cc, pion_sing_s.h: This is the
	  first version of the code that computes the correlators for the
	  (taste) singlet pseudoscalar. This code was written by Eric
	  Gregory.

2004-12-19 08:52  mcneile

	* lib/meas/smear/: displacement.cc, displacement.h: I have added a
	  prototype for the staggered fermions.

2004-12-18 17:24  tag intel_sse_dslash1-3-3

2004-12-18 17:24  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2004-12-17 12:45  bjoo

	* lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_hamsys_ferm.cc,
	  mainprogs/tests/t_prec_wilson_force.cc,
	  mainprogs/tests/t_unprec_wilson_force.cc,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure: Prec and Unprec
	  forces work now

2004-12-16 20:47  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc: Bug
	  fixes. Now at least compiles.

2004-12-16 18:22  bjoo

	* mainprogs/tests/t_hamsys_ferm.cc: Attempt at using new force

2004-12-15 18:24  tag chroma1-11-1

2004-12-15 18:24  edwards

	* NEWS: Info on 1.11.1

2004-12-15 18:18  edwards

	* chroma-config.in: Fixed dslash_libs

2004-12-15 18:16  edwards

	* aclocal.m4, configure: Induced changes.

2004-12-15 18:15  edwards

	* Makefile.am: Added more EXTRA_DIST dirs.

2004-12-15 18:13  edwards

	* configure.ac: Fixed SSE_DSLASH_ENABLED flag.

2004-12-15 06:56  bjoo

	* install_scripts/QCDOC/CU_qcdochost0/README: Added another
	  paragraph to the README

2004-12-15 06:54  bjoo

	* install_scripts/QCDOC/CU_qcdochost0/: README,
	  configure_chroma.sh, configure_chroma_no_pab_dslash.sh: Added
	  build instructions for QCDOC plus some extra info in the README
	  file

2004-12-14 23:49  edwards

	* lib/: gaugeact.h, actions/boson/operator/klein_gord.cc,
	  actions/boson/operator/klein_gord.h,
	  actions/gauge/wilson_gaugeact.cc,
	  actions/gauge/wilson_gaugeact.h: Added Chroma namespace.

2004-12-14 12:01  edwards

	* install_scripts/jlab/config_chroma_parscalar-gm.sh: Commented out
	  dwf install

2004-12-14 00:21  edwards

	* lib/actions/ferm/linop/: lwldslash_w.cc, lwldslash_w.h,
	  lwldslash_w_pab.cc, lwldslash_w_pab.h, lwldslash_w_sse.cc,
	  lwldslash_w_sse.h, prec_wilson_linop_w.cc,
	  unprec_wilson_linop_w.cc: Added derivative routines to all
	  WilsonDslash variants. Made deriv. in unprec and prec. Wilson
	  defined over the WilsonDslash variants.

2004-12-13 17:41  edwards

	* lib/update/molecdyn/abs_monomial.h: Start of monomial class.

2004-12-13 14:46  edwards

	* install_scripts/jlab/: build.csh, build2m-intel.csh, build2m.csh,
	  build3g.csh: More sample build scripts

2004-12-12 21:56  tag chroma1-11-0

2004-12-12 21:56  edwards

	* lib/linearop.h: Fixed up deriv code. Results should live on all
	  cb.

2004-12-12 16:28  edwards

	* NEWS: Info on 1.11.0

2004-12-12 16:27  edwards

	* aclocal.m4, configure: Induced changes.

2004-12-12 16:26  edwards

	* configure.ac: Small changes.

2004-12-12 16:25  edwards

	* configure.ac: Changed to version 1.11

2004-12-12 16:22  edwards

	* lib/: fermact.h, linearop.h,
	  actions/ferm/fermacts/asqtad_fermact_s.cc,
	  actions/ferm/fermacts/asqtad_fermact_s.h,
	  actions/ferm/fermacts/asqtad_state.h,
	  actions/ferm/fermacts/fermfactory_w.h,
	  actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  actions/ferm/fermacts/prec_clover_fermact_w.h,
	  actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  actions/ferm/fermacts/stag_fermact_s.cc,
	  actions/ferm/fermacts/stag_fermact_s.h,
	  actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  actions/ferm/invert/inv_rel_cg1.cc,
	  actions/ferm/invert/inv_rel_cg1.h,
	  actions/ferm/invert/inv_rel_cg2.cc,
	  actions/ferm/invert/inv_rel_cg2.h,
	  actions/ferm/invert/inv_rel_gmresr_cg.cc,
	  actions/ferm/invert/inv_rel_gmresr_cg.h,
	  actions/ferm/invert/inv_rel_gmresr_sumr.cc,
	  actions/ferm/invert/inv_rel_gmresr_sumr.h,
	  actions/ferm/invert/inv_rel_sumr.cc,
	  actions/ferm/invert/inv_rel_sumr.h,
	  actions/ferm/invert/minv_rel_cg.cc,
	  actions/ferm/invert/minv_rel_cg.h,
	  actions/ferm/invert/minv_rel_sumr.cc,
	  actions/ferm/invert/minv_rel_sumr.h,
	  actions/ferm/linop/asq_dsl_s.cc, actions/ferm/linop/asq_dsl_s.h,
	  actions/ferm/linop/asqtad_linop_s.cc,
	  actions/ferm/linop/asqtad_linop_s.h,
	  actions/ferm/linop/asqtad_mdagm_s.cc,
	  actions/ferm/linop/asqtad_mdagm_s.h,
	  actions/ferm/linop/dwffld_w.cc, actions/ferm/linop/dwffld_w.h,
	  actions/ferm/linop/fat7_links_s.cc,
	  actions/ferm/linop/improvement_terms_s.h,
	  actions/ferm/linop/lg5eps_double_pass_w.cc,
	  actions/ferm/linop/lg5eps_double_pass_w.h,
	  actions/ferm/linop/lg5eps_w.cc, actions/ferm/linop/lg5eps_w.h,
	  actions/ferm/linop/lgherm_w.h, actions/ferm/linop/lmdagm.h,
	  actions/ferm/linop/lopscl.h,
	  actions/ferm/linop/lovddag_double_pass_w.cc,
	  actions/ferm/linop/lovddag_double_pass_w.h,
	  actions/ferm/linop/lovddag_w.cc, actions/ferm/linop/lovddag_w.h,
	  actions/ferm/linop/lovlap_double_pass_w.cc,
	  actions/ferm/linop/lovlap_double_pass_w.h,
	  actions/ferm/linop/lovlapms_w.cc,
	  actions/ferm/linop/lovlapms_w.h,
	  actions/ferm/linop/lwldslash_w.cc,
	  actions/ferm/linop/lwldslash_w.h,
	  actions/ferm/linop/lwldslash_w_pab.cc,
	  actions/ferm/linop/lwldslash_w_pab.h,
	  actions/ferm/linop/lwldslash_w_sse.cc,
	  actions/ferm/linop/lwldslash_w_sse.h,
	  actions/ferm/linop/naik_term_s.cc,
	  actions/ferm/linop/overlapbu_linop_w.cc,
	  actions/ferm/linop/overlapbu_linop_w.h,
	  actions/ferm/linop/prec_dwf_linop_array_w.cc,
	  actions/ferm/linop/prec_dwf_linop_array_w.h,
	  actions/ferm/linop/prec_dwf_linop_base_array_w.h,
	  actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  actions/ferm/linop/prec_nef_linop_array_w.cc,
	  actions/ferm/linop/prec_nef_linop_array_w.h,
	  actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  actions/ferm/linop/prec_parwilson_linop_w.cc,
	  actions/ferm/linop/prec_parwilson_linop_w.h,
	  actions/ferm/linop/prec_wilson_linop_w.cc,
	  actions/ferm/linop/prec_wilson_linop_w.h,
	  actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  actions/ferm/linop/unprec_dwf_linop_base_array_w.h,
	  actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  actions/ferm/linop/unprec_nef_linop_array_w.h,
	  actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovext_linop_array_w.h,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.cc,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  actions/ferm/linop/unprec_parwilson_linop_w.h,
	  actions/ferm/linop/unprec_pdwf4d_linop_w.h,
	  actions/ferm/linop/unprec_ppdwf4d_linop_w.h,
	  actions/ferm/linop/unprec_wilson_dmdu_w.cc,
	  actions/ferm/linop/unprec_wilson_dmdu_w.h,
	  actions/ferm/linop/unprec_wilson_linop_w.cc,
	  actions/ferm/linop/unprec_wilson_linop_w.h,
	  actions/ferm/qprop/prec_fermact_qprop.cc,
	  actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  actions/ferm/qprop/staggered_qprop.cc: Major overhaul of fermact
	  and linearop class structure. Merged ApproxLinOp into LinOp.
	  Removed dsdu stuff - now in linops.  Introduced levels of
	  fermacts (base or not) that have derivs. All low level
	  fermacts/linops have an additional template param for type of
	  conjugate momenta in derivative. Made all fermacts and linops
	  within chroma namespace.

2004-12-12 16:15  edwards

	* lib/Makefile.am: Removed unprec_wilson_dmdu.{h,cc}

2004-12-12 16:14  edwards

	* mainprogs/tests/t_precact.cc: Changed to Base linop class names.

2004-12-12 16:14  edwards

	* mainprogs/tests/Makefile.am: Moved around t_overbu and t_dwf4d

2004-12-12 16:09  tag chroma1-11-0pre

2004-12-12 16:09  edwards

	* tests/t_dwf4d/: t_dwf4d_ovdwf_v1.linux-scalar-intel.xml,
	  t_dwf4d_ovdwf_v1.xml.ini: Test codes.

2004-12-10 00:48  edwards

	* mainprogs/main/mres.cc: Removed debugging statement.

2004-12-09 22:06  tag chroma1-10-2

2004-12-09 22:06  edwards

	* NEWS: Info on 1.10.2

2004-12-09 22:05  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h:
	  Switched to linOp4D to now go via only preconditioned operators.

2004-12-09 21:58  tag chroma1-10-1

2004-12-09 21:58  edwards

	* NEWS: Info on 1.10.1

2004-12-09 21:54  edwards

	* lib/actions/ferm/linop/: linop_w.h, unprec_ppdwf4d_linop_w.cc,
	  unprec_ppdwf4d_linop_w.h: Does DWF(4D) now with all
	  preconditioned matrices.

2004-12-09 21:52  edwards

	* mainprogs/tests/t_dwf4d.cc: Bug fix - added missing quark_mass()
	  in linOp4D call.

2004-12-09 21:51  edwards

	* lib/Makefile.am: Added unprec_ppdwf4d_linop

2004-12-09 19:15  edwards

	* lib/linearop.h: Added more comments.

2004-12-09 10:26  tag chroma1-10-0

2004-12-09 10:26  edwards

	* configure: Induced changes.

2004-12-09 10:26  edwards

	* configure.ac: Changed to 1.10

2004-12-09 10:25  edwards

	* NEWS: Info on 1.10.0

2004-12-09 08:02  mcneile

	* tests/t_unit_tests/: t_lower_tests.xml, t_lower_tests_METRIC.xml:
	  Control and candidate documents for simple unit tests.

2004-12-09 07:58  mcneile

	* scripts/run_xmldiff.pl: I have added a some simple unit tests

2004-12-09 07:56  mcneile

	* mainprogs/tests/Makefile.am: Added a call to a simple unit test

2004-12-09 07:55  mcneile

	* mainprogs/tests/t_lower_tests.cc: This is a simple wrapper to a
	  unit test framework. The xmldiff tool is not really designed for
	  this, but it will work at some level.  As I am about to check in
	  some modifications to the displacement routine, I stART with a
	  simple test for that routine.

2004-12-09 00:14  edwards

	* mainprogs/main/mres.cc: Added back in an optional DATA input
	  version of stateInfo in case it is not in the propagator.

2004-12-08 23:30  edwards

	* mainprogs/main/Makefile.am: Moved mres to make check

2004-12-08 23:04  edwards

	* mainprogs/tests/t_dwf4d.cc: Small fixes - test proper norm. Also
	  do MINUS checks.

2004-12-08 22:59  edwards

	* lib/linearop.h: Fixed up comments.

2004-12-08 22:58  edwards

	* lib/Makefile.am: Added llincomb.h

2004-12-08 22:58  edwards

	* lib/actions/ferm/: fermacts/overlap_fermact_base_w.h,
	  fermacts/ovlap_partfrac4d_fermact_w.cc,
	  fermacts/ovlap_partfrac4d_fermact_w.h,
	  fermacts/prec_dwf_fermact_array_sse_w.cc,
	  fermacts/prec_dwf_fermact_array_sse_w.h,
	  fermacts/prec_dwf_fermact_array_w.cc,
	  fermacts/prec_dwf_fermact_array_w.h,
	  fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/prec_kno_fermact_array_w.cc,
	  fermacts/prec_kno_fermact_array_w.h,
	  fermacts/prec_nef_fermact_array_w.cc,
	  fermacts/prec_nef_fermact_array_w.h,
	  fermacts/prec_ovdwf_fermact_array_w.cc,
	  fermacts/prec_ovdwf_fermact_array_w.h,
	  fermacts/prec_zolo_nef_fermact_array_w.cc,
	  fermacts/prec_zolo_nef_fermact_array_w.h,
	  fermacts/unprec_dwf_fermact_array_w.cc,
	  fermacts/unprec_dwf_fermact_array_w.h,
	  fermacts/unprec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_nef_fermact_array_w.cc,
	  fermacts/unprec_nef_fermact_array_w.h,
	  fermacts/unprec_ovdwf_fermact_array_w.cc,
	  fermacts/unprec_ovdwf_fermact_array_w.h,
	  fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  fermacts/unprec_zolo_nef_fermact_array_w.h, linop/lDeltaLs_w.cc,
	  linop/lDeltaLs_w.h, qprop/dwf_fermact_qprop_array_w.cc:
	  Changed/simplified dwf interface. Only unprec and prec linops
	  need be defined. They now take a mass argument. Made generic
	  lmdagm definition in base class. Removed usage of  g5eps function
	  and added lDeltaLs function. Now, only uses unprec linop
	  (massless) and not g5*epsilon version.

2004-12-08 22:55  edwards

	* lib/actions/ferm/linop/: unprec_dwf4d_linop_w.cc,
	  unprec_pdwf4d_linop_w.cc: Added MINUS version as well.

2004-12-08 16:50  edwards

	* lib/actions/ferm/linop/naik_term_s.cc: Made include more specific
	  - less rebuilding.

2004-12-08 16:49  edwards

	* lib/actions/ferm/linop/fat7_links_s.cc: Made include's more
	  specific - less rebuilding.

2004-12-08 16:48  edwards

	* mainprogs/main/propagator.cc: Write out stateinfo

2004-12-08 16:45  edwards

	* lib/meas/hadron/: hadron_corr_s.h, loops_s.h, pions_s.cc,
	  pions_s.h, scalar_loops_s.h, stag_propShift_s.cc,
	  stag_propShift_s.h, stag_scalars_s.cc, stag_scalars_s.h,
	  vector_meson_s.cc, vector_meson_s.h: Made include files less
	  far-reaching. Now, the files don't rebuild as much. No major
	  changes otherwise.

2004-12-08 16:43  edwards

	* lib/util/gauge/gauge_startup.cc: Simplified init of U in free
	  case.

2004-12-08 16:38  edwards

	* mainprogs/main/Makefile.am: Added mres to EXTRA_PROGRAMS

2004-12-08 16:36  tag chroma1-9-2

2004-12-08 16:36  edwards

	* NEWS: Info on 1.9.2

2004-12-08 16:35  edwards

	* mainprogs/main/mres.cc: Compute 4D mres from propagators

2004-12-07 15:21  edwards

	* lib/actions/ferm/linop/linop_w.h: Added lDeltals_w.h

2004-12-07 15:21  edwards

	* lib/actions/ferm/linop/linop.h: Added llincomb.h

2004-12-07 15:21  edwards

	* lib/actions/ferm/linop/llincomb.h: Supports linear combinations
	  of an operator.

2004-12-07 15:18  edwards

	* other_libs/Makefile.am: Added more to EXTRA_DIST.

2004-12-07 12:11  bjoo

	* lib/Makefile.am, lib/fermact.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/linop/unprec_wilson_dmdu_w.cc,
	  lib/actions/ferm/linop/unprec_wilson_dmdu_w.h,
	  mainprogs/tests/t_hamsys_ferm.cc: Added ldMdU operator to
	  UnprecWilsonFermAct

2004-12-05 14:09  mcneile

	* lib/meas/hadron/loops_s.h: Some changes maded.

2004-12-05 14:02  mcneile

	* lib/Makefile.am: I have added some new staggered code.

2004-12-05 13:35  mcneile

	* lib/meas/hadron/: hadron_s.h, pseudoscalar_loops_s.cc,
	  pseudoscalar_loops_s.h, scalar_loops_s.cc, scalar_loops_s.h: This
	  is the code for the singlet project

2004-12-05 13:31  mcneile

	* mainprogs/tests/: t_disc_loop_s.cc, t_propagator_fuzz_s.cc,
	  t_propagator_s.cc: These have been updated for the xmlfiff test.

2004-12-05 13:28  mcneile

	* scripts/run_xmldiff.pl: The script new fails if it can't find
	  xmldiff.  One more test case has been added.

2004-12-05 13:26  mcneile

	* tests/t_asqtad_prop/: t_propagator_fuzz_s.xml,
	  t_propagator_s.xml, t_propagator_s_METRIC.xml: These are the
	  start of the xml metric system

2004-12-05 13:24  mcneile

	* tests/t_asqtad_prop/: DISC_DATA_v2,
	  t_propagator_fuzz_s_METRIC.xml: I have updated these soe that the
	  make xcheck call works

2004-11-23 23:16  kostas

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  mainprogs/main/propagator.cc: code works now

2004-11-23 15:02  kostas

	* lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc: code
	  compiles...

2004-11-23 10:48  kostas

	* lib/actions/ferm/fermacts/: prec_kno_fermact_array_w.cc,
	  prec_kno_fermact_array_w.h: finished code. needs debugging

2004-11-22 21:29  tag chroma1-9-1

2004-11-22 21:29  edwards

	* NEWS: Info on 1.9.1

2004-11-22 17:54  edwards

	* mainprogs/tests/: t_conslinop.cc, t_dslashm.cc, t_hypsmear.cc,
	  t_overbu.cc, t_spprod.cc, t_wlinvcg.cc: Changed all namelist uses
	  to XML.

2004-11-21 18:08  tag chroma1-9-0

2004-11-21 18:08  tag intel_sse_dslash1-3-2

2004-11-21 18:08  edwards

	* other_libs/intel_sse_wilson_dslash/examples/Makefile.am: Added
	  HDRS to t_dslash_SOURCES.

2004-11-21 17:48  edwards

	* lib/Makefile.am: Added loops_s.h

2004-11-21 17:40  edwards

	* lib/Makefile.am: Added scalar_loops_s.h

2004-11-21 17:39  edwards

	* lib/meas/hadron/scalar_loops_s.cc: Changed path to
	  meas/hadron/scalar_loops_s.h

2004-11-21 17:33  edwards

	* lib/Makefile.am: Added missing hadron_corr_s.h

2004-11-21 16:59  edwards

	* tests/propagator/propagator_prec_zolo_nef.v6.xml.ini: Added
	  ApproximationType

2004-11-21 11:44  kostas

	* lib/actions/ferm/fermacts/prec_kno_fermact_array_w.h: new action.
	  code not finished

2004-11-21 11:43  kostas

	* lib/actions/ferm/fermacts/prec_kno_fermact_array_w.cc: new
	  action. Code not finished

2004-11-21 00:03  edwards

	* NEWS: Info on 1.9.0.

2004-11-20 23:50  edwards

	* aclocal.m4, configure: Induced changes.

2004-11-20 23:49  edwards

	* docs/Makefile.am: Removed VPATH.

2004-11-20 23:49  edwards

	* configure.ac: Turned off docs stuff for now. Needs more work.

2004-11-20 17:39  tag intel_sse_dslash1-3-1

2004-11-20 17:39  edwards

	* other_libs/intel_sse_wilson_dslash/configure: Induced changes.

2004-11-20 17:38  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Changed to
	  version 1.3.1

2004-11-20 17:36  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4: Induced changes.

2004-11-20 17:35  edwards

	* other_libs/intel_sse_wilson_dslash/: include/Makefile.am,
	  lib/Makefile.am: Removed VPATH's and instead use explicit paths.

2004-11-20 17:28  edwards

	* lib/actions/ferm/qprop/nef_quarkprop4_w.cc: Narrowed include
	  dependencies.

2004-11-20 17:05  edwards

	* lib/geom.h: Not used.

2004-11-20 17:04  edwards

	* lib/geom/geom.cc: No longer used.

2004-11-20 17:01  edwards

	* scripts/: build_include_headers.pl, build_libchroma_sources.pl:
	  Removed "geom" dir.

2004-11-20 17:00  edwards

	* lib/: actions/ferm/linop/lmpsim_w.cc,
	  actions/ferm/linop/lmpsim_w.h,
	  actions/ferm/qprop/overlap_fermact_qprop_w.cc,
	  io/zolotarev5d_fermact_paramio_w.cc,
	  io/zolotarev5d_fermact_paramio_w.h, util/gauge/phfctr.cc,
	  util/gauge/phfctr.h: Removed unused files.

2004-11-20 17:00  edwards

	* lib/Makefile.am: Removed VPATH. Now uses absolute paths. All
	  fermion (Wilson/Staggered) integrated into one build.

2004-11-20 16:19  edwards

	* lib/: io/io.h, meas/hadron/hadron.h, meas/sources/sources.h,
	  util/ferm/ferm.h, util/gauge/gauge.h: Removed Wilson/Staggered
	  specific build directives.

2004-11-20 16:18  edwards

	* lib/actions/ferm/linop/: asq_dsl_s.cc, asqtad_dslash.h,
	  asqtad_linop_s.cc, asqtad_linop_s.h, asqtad_mdagm_s.cc,
	  asqtad_mdagm_s.h: Narrowed down include dependencies.

2004-11-20 16:18  edwards

	* lib/actions/ferm/: fermacts/fermacts.h, linop/linop.h,
	  qprop/qprop.h: Removed CHROMA_BUILD Wilson/Staggered directives.

2004-11-20 16:17  edwards

	* lib/actions/ferm/fermacts/fermacts_w.h: Moved around prec zolo.

2004-11-20 16:16  edwards

	* lib/actions/ferm/qprop/nef_quarkprop4_w.cc: Tried to simplify
	  number of include lines.

2004-11-20 16:16  edwards

	* lib/actions/ferm/qprop/: dwf_quarkprop4_w.h, nef_quarkprop4_w.h:
	  Not needed.

2004-11-20 16:13  edwards

	* configure.ac: Changed to version 1.9

2004-11-20 16:13  edwards

	* configure, aclocal.m4: Induced changes.

2004-11-20 16:12  edwards

	* scripts/: build_include_headers.pl, build_libchroma_sources.pl:
	  New include and libchroma source form.

2004-11-20 16:11  edwards

	* lib/Makefile.am: Removed fermion specific builds.

2004-11-20 16:10  edwards

	* configure.ac, lib/chroma_config_internal.h.in,
	  mainprogs/main/Makefile.am: Removing fermion specific builds.

2004-11-20 15:59  mcneile

	* lib/meas/hadron/: loops_s.h, scalar_loops_s.cc, scalar_loops_s.h:
	  These are wrapper to Steve Millers code to compute scalar loops.
	  This is the start of productin hardening his research code.

2004-11-20 14:56  tag chroma1-8-2

2004-11-20 14:56  edwards

	* configure: Induced changes.

2004-11-20 14:53  edwards

	* NEWS: Info on 1.8.2

2004-11-20 14:50  edwards

	* lib/meas/pbp/mespbp_s.cc: Changed to use LatticeStaggeredFermion

2004-11-20 14:48  edwards

	* lib/meas/pbp/stagpbp_s.cc: [no log message]

2004-11-20 14:28  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: I have added the new data
	  structures for staggered fermions.

2004-11-20 14:26  mcneile

	* lib/meas/hadron/z2_src.cc: I have added code for staggered
	  fermions.

2004-11-20 14:25  mcneile

	* lib/meas/hadron/z2_src.h: I have added decleration for staggered
	  fermions

2004-11-20 13:09  mcneile

	* lib/meas/hadron/pions_s.cc: The output tags have been improved.

2004-11-20 13:08  mcneile

	* lib/meas/hadron/pions_s.h: I have added better output.

2004-11-20 10:50  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: This routine now uses the
	  new staggered structure.

2004-11-20 10:42  mcneile

	* lib/meas/hadron/: baryon_s.cc, baryon_s.h: The routine now uses
	  the staggerd fermion data structures.

2004-11-20 10:17  mcneile

	* lib/Makefile.am: Added a point source for staggered fermions.

2004-11-20 10:11  mcneile

	* lib/meas/hadron/srcfil.h: I have added a decleration for  stagger
	  fermions.

2004-11-20 10:10  mcneile

	* lib/meas/hadron/srcfil_s.cc: This is a stagger fermion specific
	  version of this code.

2004-11-20 09:54  mcneile

	* lib/meas/smear/fuzz_smear.h: I have added a stagered fermion call

2004-11-20 09:49  mcneile

	* lib/meas/smear/fuzz_smear.cc: I have added a staggerred version.

2004-11-20 09:47  mcneile

	* lib/meas/smear/: displacement.cc, displacement.h: I have added a
	  version for staggered fermions.

2004-11-19 22:49  edwards

	* mainprogs/tests/t_mres_4d.cc: Added more classes to linkage_hack.

2004-11-18 17:14  bjoo

	* lib/update/molecdyn/chrono_predictor.h: Oops

2004-11-18 17:09  bjoo

	* lib/update/molecdyn/: abs_hamiltonian.h, chrono_predictor.h,
	  molecdyn.h: Interface for chronological predictor.h

2004-11-17 22:15  bjoo

	* mainprogs/tests/t_mres_4d.cc: Added Delta_sq operator

2004-11-17 21:13  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h: Added unprecLinOp

2004-11-17 12:40  edwards

	* lib/Makefile.am: Bug fix. Changed baryon_w.h to baryon_s.h in the
	  staggered section.

2004-11-17 11:56  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h:
	  Changed linOp4D to use some prec. parts of fermact.

2004-11-17 11:53  edwards

	* lib/actions/ferm/linop/: unprec_pdwf4d_linop_w.cc,
	  unprec_pdwf4d_linop_w.h: Unprec 4D linop using prec 5D bits

2004-11-17 11:53  edwards

	* lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc: [no log message]

2004-11-17 11:53  edwards

	* lib/actions/ferm/linop/linop_w.h: Added
	  unprec_{p,}dwf4d_linop_w.h

2004-11-17 11:52  edwards

	* lib/actions/ferm/qprop/prec_fermact_qprop_array.cc: Improved some
	  comments

2004-11-17 11:51  edwards

	* lib/Makefile.am: Added unprec_pdwf4d_linop_w.{h,cc}

2004-11-17 11:51  edwards

	* tests/t_dwf4d/t_dwf4d.xml.ini: Shamir tests.

2004-11-17 10:22  tag bj_pre_ham_ferm_bilinear

2004-11-17 10:22  bjoo

	* lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  mainprogs/main/collect_multi_propcomp.cc,
	  mainprogs/main/collect_propcomp.cc,
	  mainprogs/main/multi_propagator.cc, mainprogs/main/propagator.cc,
	  mainprogs/main/propagator_comp.cc, mainprogs/main/spectrum_w.cc,
	  mainprogs/tests/Makefile.am: t_su3 removed from make check.
	  Throws stringified

2004-11-16 18:08  velytsky

	* lib/Makefile.am, lib/update/heatbath/hb_params.h,
	  lib/update/heatbath/su2_hb_update.cc,
	  lib/update/heatbath/su2_hb_update.h,
	  lib/update/heatbath/su3_hb_sweep.cc,
	  lib/update/heatbath/su3_hb_sweep.h,
	  lib/update/heatbath/u_staple.cc, lib/update/heatbath/u_staple.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_su3.cc,
	  tests/heatbath/b5.6_xi1_4_4_4_4: Added heatbath updating (pure
	  glue SU(3)) for isotropic and anisotropic lattices.

2004-11-16 13:50  bjoo

	* lib/actions/ferm/: fermacts/prec_zolo_nef_fermact_array_w.cc,
	  fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  linop/unprec_dwftransf_linop_w.cc,
	  linop/unprec_dwftransf_linop_w.h: Most recent

2004-11-16 01:09  bjoo

	* lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  mainprogs/tests/t_dwf4d.cc: Zolo Shamir and sign fn of DWFTRANSF
	  give same result

2004-11-15 23:30  edwards

	* tests/t_dwf4d/t_dwf4d.xml.ini: Another input version.

2004-11-15 23:08  bjoo

	* lib/actions/ferm/: fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  fermacts/unprec_zolo_nef_fermact_array_w.h,
	  linop/unprec_dwftransf_linop_w.cc: Zolo Shamir Fix

2004-11-15 16:52  edwards

	* mainprogs/tests/t_dwf4d.cc: Bug fix.

2004-11-15 16:52  edwards

	* lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc: Small bug
	  fix.

2004-11-15 16:51  edwards

	* mainprogs/tests/Makefile.am: Added t_dwf4d.cc

2004-11-15 16:50  edwards

	* tests/t_dwf4d/t_dwf4d.xml.ini: Test input file.

2004-11-13 12:32  bjoo

	* configure,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  lib/io/enum_io/enum_cfgtype_io.cc,
	  lib/io/enum_io/enum_cfgtype_io.h,
	  lib/util/gauge/gauge_startup.cc: Added Kentucky Gauges to
	  enum_cfgtype_io as CFG_TYPE_KYU with string KYU. Added KYU gauges
	  to gauge_startup

2004-11-13 09:04  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have cleaned up the code a
	  bit.

2004-11-13 08:11  mcneile

	* tests/t_asqtad_prop/DATA_v2: The gauge configuration now points
	  to the correct location.  The "t_propagator_s" executable should
	  now work from the "box"

2004-11-13 08:08  mcneile

	* mainprogs/tests/t_propagator_s.cc: The input files is taken
	  directrly from the storage area.

2004-11-13 07:17  mcneile

	* lib/actions/ferm/invert/: invcg1.cc, invcg2.cc: I have corrected
	  a bug with the template specialization with staggered fermions.

2004-11-12 13:54  mcneile

	* lib/actions/ferm/invert/invcg2.cc: I have added a template
	  specialization for the staggered fermions data structure.

2004-11-12 13:50  mcneile

	* lib/actions/ferm/qprop/fermact_qprop.cc: I am adding yet more
	  template specialization for the staggered fermion data
	  structures.

2004-11-12 13:20  mcneile

	* lib/actions/ferm/invert/invcg1.cc: I have added some partial
	  template stuff for the staggered fermion data structures.

2004-11-12 09:49  mcneile

	* lib/meas/hadron/walfil_s.cc: Added an additiona staggered fermion
	  operators.

2004-11-12 06:00  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have updated the file so
	  that staggered fermion data structures are used.

2004-11-12 05:50  mcneile

	* lib/util/ferm/transf.cc: I have added a routine for staggered
	  fermions.

2004-11-12 05:49  mcneile

	* lib/util/ferm/transf.h: I have the prototype for the conversion
	  routine using staggered fermions.

2004-11-12 05:24  mcneile

	* lib/meas/hadron/: walfil_s.cc, walfil_s.h: I have updated the
	  routines to use the dedicated staggered fermion data structures.

2004-11-09 00:45  edwards

	* mainprogs/tests/t_dwf4d.cc: Test code to compare projected 5D
	  DWF-like codes with a 4D code

2004-11-09 00:42  edwards

	* lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc: Bug fix.

2004-11-08 12:05  mcneile

	* configure.ac: Remove the lines that barf when wetry to compile a
	  staggered code with Ns=4 qdp++.

2004-11-08 11:25  mcneile

	* lib/fermact.h: LatticeFermion ==> LatticeStaggeredFermion for
	  methods in staggered fermion classes

2004-11-08 11:21  mcneile

	* lib/meas/hadron/: stag_propShift_s.cc, stag_propShift_s.h: I have
	  changed from genereic propagators to staggered propagators.

2004-11-08 11:18  mcneile

	* lib/chromabase.h: I have added partial specialization for
	  staggered fermions.

2004-11-08 01:40  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_w.cc,
	  prec_dwf_fermact_array_w.h, prec_dwf_fermact_base_array_w.h,
	  prec_nef_fermact_array_w.cc, prec_nef_fermact_array_w.h,
	  prec_ovdwf_fermact_array_w.cc, prec_ovdwf_fermact_array_w.h,
	  prec_zolo_nef_fermact_array_w.cc,
	  prec_zolo_nef_fermact_array_w.h: Added an  unprecLinOp  factory
	  function. The linOp4D now (correctly) uses this unprec. linop.

2004-11-08 01:09  edwards

	* mainprogs/main/propagator.cc: Added (for the moment) DWFTRANSF

2004-11-08 00:52  edwards

	* lib/actions/ferm/linop/unprec_dwf4d_linop_w.cc: Small bug fix.

2004-11-08 00:41  edwards

	* lib/Makefile.am: Added unprec_dwf4d_linop_w.{h,cc}

2004-11-08 00:41  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_dwf_fermact_base_array_w.h,
	  linop/unprec_dwf4d_linop_w.cc, linop/unprec_dwf4d_linop_w.h:
	  Added UnprecDWF4DLinOp guys that does a 4D linop that is the
	  usual ratio of a 5D linop to a 5D linopPV.

2004-11-06 15:32  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Added xml flushes.

2004-11-06 15:22  edwards

	* tests/ExampleBuildingBlocks/: output_v1.txt, output_v1.xml,
	  run.sh: Test cases of BuildingBlocks

2004-11-06 15:19  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Added output of basic
	  observables.

2004-11-06 15:04  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Added output of XML
	  file.

2004-11-06 09:21  mcneile

	* mainprogs/tests/t_propagator_s.cc: LatticeFermion ==>
	  LatticeStaggeredFermion

2004-11-06 08:03  mcneile

	* lib/actions/ferm/qprop/staggered_qprop.cc:
	  LatticeFermion ==> LatticeStaggeredFermion

2004-11-06 08:00  mcneile

	* lib/actions/ferm/fermacts/: stag_fermact_s.cc, stag_fermact_s.h:
	  LatticeFermion ==> LatticeStaggeredFermion

2004-11-06 07:55  mcneile

	* lib/actions/ferm/linop/: asq_dsl_s.cc, asq_dsl_s.h:
	  LatticeFermion ==> LatticeStaggeredFermion

2004-11-06 06:35  mcneile

	* lib/actions/ferm/linop/: asqtad_mdagm_s.cc, asqtad_mdagm_s.h:
	  LatticeFermion ==> LatticeStaggeredFermion

2004-11-06 06:30  mcneile

	* lib/actions/ferm/linop/: asqtad_linop_s.cc, asqtad_linop_s.h:
	  LatticeFermion ==> LatticeStaggeredFermion

2004-11-06 06:27  mcneile

	* lib/actions/ferm/fermacts/: asqtad_fermact_s.cc,
	  asqtad_fermact_s.h: LatticeFermion ==> LatticeStaggeredFermion

2004-11-02 10:43  bjoo

	* lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  mainprogs/tests/t_mres_4d.cc, mainprogs/tests/t_ritz_KS.cc:
	  DWFTransf can now find ev-s and evecs of H_t directly

2004-11-02 07:21  bjoo

	* lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  mainprogs/tests/t_ritz_KS.cc: Fixed DWFTRansf. More believable
	  now

2004-11-02 05:33  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwftransf_fermact_w.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwftransf_linop_w.h,
	  mainprogs/tests/t_ritz_KS.cc: Added dwftransf operator and action

2004-11-01 14:11  ikuro

	* lib/Makefile.am: [no log message]

2004-11-01 13:43  ikuro

	* lib/meas/smear/: smear.h, stout_smear.cc, stout_smear.h: [no log
	  message]

2004-11-01 07:52  bjoo

	* lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  tests/propagator/propagator_prec_zolo_nef.v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_zolo_nef.v6.xml.ini,
	  tests/propagator/propagator_unprec_zolo_nef.v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_zolo_nef.v6.xml.ini: Added
	  alpha-beta printout to 5d CG routines for post facto e-vaue
	  analysis. Changed interfaces for zolo nef to use b5 and c5 as
	  they should

2004-10-30 09:41  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have added a call to the
	  code that computes the vector meson correlator

2004-10-30 09:40  mcneile

	* lib/Makefile.am: I have added targets for the vector meson code.

2004-10-30 09:38  mcneile

	* lib/meas/hadron/hadron_s.h: I have added the include file for
	  vector mesons.

2004-10-30 09:38  mcneile

	* lib/meas/hadron/: vector_meson_s.cc, vector_meson_s.h: These are
	  the start of my attempts to add vector mesons to the code.

2004-10-30 07:14  mcneile

	* mainprogs/tests/t_propagator_s.cc: The scalar correlators are now
	  computed uisng the generic framework.

2004-10-30 07:10  mcneile

	* lib/meas/hadron/: stag_scalars_s.cc, stag_scalars_s.h: These
	  files now use the same system as the pseudoscalars.

2004-10-30 06:47  mcneile

	* lib/meas/hadron/pions_s.h: The XML tags are now initialized in
	  this class.

2004-10-30 06:45  mcneile

	* lib/meas/hadron/hadron_corr_s.h: This is the lower level class
	  with all the common code for the staggered correlation functions.

2004-10-30 06:43  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have added the new
	  correlator routines for the pseudoscalar channels

2004-10-30 05:33  mcneile

	* lib/meas/hadron/: pions_s.cc, pions_s.h: I creating a light
	  weight structure for staggered correlation routines

2004-10-29 22:15  edwards

	* tests/seqsource/: prop_seqsource_v6.linux-scalar-intel.xml,
	  seqsource_v1.linux-scalar-intel.xml: Updated to match new output
	  format.

2004-10-29 22:06  edwards

	* lib/io/param_io.cc: Bug fix - the MaxCGPrec was not initialized
	  properly if not present.

2004-10-29 15:50  bjoo

	* lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  tests/propagator/propagator_prec_zolo_nef.v6.xml.ini,
	  tests/propagator/propagator_unprec_zolo_nef.v6.xml.ini: Added in
	  a5 parameter to allow Shamirization of prec_zolo_nef. You NEED to
	  get ApproxMin and ApproxMax right tho, so BEWARE...

2004-10-29 11:08  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/:
	  32bit/dslash/sse_su3dslash_w.c, 64bit/dslash/sse_su3dslash_w.c:
	  Removed calls to QMP_free_msghandle of children per the new QMP-2
	  specification.

2004-10-29 10:55  mcneile

	* lib/Makefile.am: I have added the calls to the "new" pions
	  object.

2004-10-29 10:50  mcneile

	* lib/meas/hadron/hadron_s.h: These use the type definition for
	  staggered fermions.

2004-10-29 10:44  mcneile

	* lib/meas/hadron/: stag_scalars_s.cc, stag_scalars_s.h: I have
	  added the new typedefinition

2004-10-29 10:37  mcneile

	* lib/meas/hadron/: pions_follana_s.cc, pions_follana_s.h: These
	  are now called pions_s.cc/.h

2004-10-29 10:35  mcneile

	* lib/meas/hadron/: pions_s.cc, pions_s.h: These are simple
	  modeifications of pions_follana_s.cc and pions_follana_s.h

2004-10-29 10:32  mcneile

	* mainprogs/tests/t_propagator_s.cc: I have started to use the
	  LatticeStaggeredPropagator type.

2004-10-29 09:36  tag end_steve_miller_staggered

2004-10-29 09:36  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_general_linop_array_w.h,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  mainprogs/main/propagator.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_prec_nef.cc,
	  tests/propagator/propagator_prec_zolo_nef.v6.xml.ini: Added
	  generalised preconditioned nef operator, and a zolotarev facade
	  to it. Can now do Chiu! Which is just as well because I am just
	  about to go down with the flu

2004-10-28 20:31  edwards

	* lib/Makefile.am: Added missing fermfactory_w.h to make install
	  section

2004-10-24 17:39  bjoo

	* lib/actions/ferm/linop/: prec_nef_general_linop_array_w.cc,
	  prec_nef_general_linop_array_w.h: Added prec_nef_general_linop
	  stuff

2004-10-24 01:00  edwards

	* other_libs/intel_sse_wilson_dslash/examples/t_dslash.c: Updated
	  to QMP-2

2004-10-24 00:49  edwards

	* other_libs/intel_sse_wilson_dslash/configure: Induced changes.

2004-10-24 00:42  edwards

	* other_libs/intel_sse_wilson_dslash/examples/t_dslash.c: Updated
	  to QMP-2

2004-10-24 00:41  edwards

	* other_libs/intel_sse_wilson_dslash/aclocal.m4: Induced changes.

2004-10-24 00:40  edwards

	* other_libs/intel_sse_wilson_dslash/acinclude.m4: Updated QMP_init
	  to QMP-2.

2004-10-23 07:29  bjoo

	* mainprogs/tests/t_ritz_KS.cc: Made ritz more talkative

2004-10-22 15:04  edwards

	* mainprogs/main/make_source.cc: Bug fix. Changed BlkAccu to be
	  correct float. Previously, the accuracy was negative thus forcing
	  all iterations for ape smearing - a major over-kill.

2004-10-22 10:44  mcneile

	* mainprogs/tests/INPUT_W.xml: I have changed the name from HOT to
	  DISORDERED, so that the code works with the more generic gauge IO
	  routines

2004-10-22 10:42  mcneile

	* mainprogs/tests/t_propagator_w.cc: I have hacked that routine
	  that reads the type of gauge routine to use the more generic
	  gauge creation utilities. This code should compile out of the
	  box.

2004-10-21 23:43  edwards

	* lib/actions/ferm/qprop/: dwf_fermact_qprop_array_w.cc,
	  prec_dwf_fermact_qprop_array_w.cc,
	  unprec_dwf_fermact_qprop_array_w.cc: Removed unprec and prec dwf
	  qprop in favor of generic dwf_fermact_qprop.	This version only
	  handles the 4D to 5D and projection to 4D again.

2004-10-21 23:38  edwards

	* lib/Makefile.am: Removed prec and unprec dwf qprop array routines
	  in favor of new generic dwf_fermact_qprop_array_w.cc file. This
	  is now a simple call of qpropT.

2004-10-21 23:37  edwards

	* lib/actions/ferm/linop/prec_nef_linop_array_w.h: Added temporary
	  dummy constructor with array of b5,c5.

2004-10-21 23:36  edwards

	* lib/actions/ferm/fermacts/: ovlap_partfrac4d_fermact_w.cc,
	  prec_ovlap_contfrac5d_fermact_array_w.cc,
	  unprec_ovlap_contfrac5d_fermact_array_w.cc: Changed free of zolo
	  C-code data to call of zolotarev_free.

2004-10-21 23:36  edwards

	* lib/actions/ferm/fermacts/: unprec_nef_fermact_array_w.cc,
	  unprec_nef_fermact_array_w.h: Changed back to only taking a
	  single value instead of array of b5,c5.

2004-10-21 23:35  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h: Moved qprop back up to base.

2004-10-21 23:32  edwards

	* lib/actions/ferm/fermacts/: prec_zolo_nef_fermact_array_w.cc,
	  prec_zolo_nef_fermact_array_w.h: First version.

2004-10-21 23:17  edwards

	* lib/actions/ferm/fermacts/: zolotarev.h, zolotarev_coeffs.cc:
	  Added zolotarev_free

2004-10-21 23:16  edwards

	* lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc:
	  Seems like a bug fix. The initCoeffs in the linOpPV was missing.

2004-10-21 14:11  tag chroma1-8-1

2004-10-21 14:11  edwards

	* NEWS: Info on 1.8.1

2004-10-21 12:43  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_zolo_nef_fermact_array_w.h,
	  lib/actions/ferm/qprop/nef_quarkprop4_w.cc,
	  mainprogs/main/propagator.cc,
	  tests/propagator/propagator_unprec_zolo_nef.v6.xml.ini:
	  UNPRECONDITIONED_ZOLO_NEF

2004-10-21 08:47  bjoo

	* lib/io/eigen_io.cc,
	  tests/multi_propagator/multi_propagator_zolo4_v5.linux-scalar-intel.xml,
	  tests/multi_propagator/multi_propagator_zolo4_v5.xml.ini: E-vecs
	  now read correctly in propagator and multi-propagator thanks to
	  fixes in t_ritz_KS

2004-10-21 00:16  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc: Not
	  currently used.

2004-10-20 17:01  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c:
	  Cleaned up conversions from QMP-1 to QMP-2.

2004-10-19 23:22  edwards

	* mainprogs/tests/t_precact_sse.cc: Added tests of qprop as well as
	  qpropT.

2004-10-19 23:22  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h: Made a local qprop that uses
	  qpropT. This should be the default.

2004-10-19 22:35  edwards

	* mainprogs/tests/t_precact_sse.cc: Removed old code. Changed
	  opt_qpropT to qpropT.

2004-10-19 22:30  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc: Bug
	  fixes. Seems to work on parscalar-single  !!

2004-10-19 22:11  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc: Bug
	  fixes. Still not working.

2004-10-19 08:54  bjoo

	* lib/actions/ferm/fermacts/: overlap_fermact_base_w.cc,
	  zolotarev.h, zolotarev_coeffs.cc: Added in new
	  zolotarev_coeffs.cc zolotarev.h from Tony which now should
	  produce Chiu (related by inverse) coefficients. MultiQprop still
	  seem broken for tanh but works for Zolo. I think it is the
	  ordering of how I multiply the Mdagger for the solve...

2004-10-18 23:49  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.h: Bug fix
	  - forgot to call init() within a constructor.

2004-10-18 23:25  edwards

	* mainprogs/main/propagator.cc: Added SSE DWF CG fermact hooks for
	  now.

2004-10-18 23:25  edwards

	* lib/actions/ferm/: fermacts/fermacts_w.h,
	  qprop/dwf_quarkprop4_w.cc: Added SSE even/odd CG inverter hooks
	  for now.

2004-10-18 23:24  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h: Changed opt_qpropT to qpropT.
	  Added dwf_quarkProp4

2004-10-18 21:42  tag chroma1-8-0

2004-10-18 21:42  edwards

	* aclocal.m4, configure: Induced changes.

2004-10-18 21:41  edwards

	* configure.ac: Changed to 1.8

2004-10-18 21:40  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c:
	  Small typo fix.

2004-10-18 21:36  edwards

	* install_scripts/jlab/: config_chroma_parscalar-gigE-double.sh,
	  config_chroma_parscalar-gigE.sh,
	  config_chroma_parscalar-gm-double.sh,
	  config_chroma_parscalar-gm.sh: Sample scripts

2004-10-18 21:22  edwards

	* install_scripts/: cygwin/config_chroma_scalar.sh,
	  jlab/config_chroma_scalar, jlab/config_chroma_scalar.sh: New
	  scripts

2004-10-18 21:10  edwards

	* other_libs/intel_sse_wilson_dslash/configure: Fixed up configure

2004-10-18 16:41  edwards

	* NEWS: Info on 1.8.0

2004-10-18 16:40  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h: Changed to support new
	  cg-sse-1.1.4 version of DWF

2004-10-18 16:40  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/:
	  shift_tables.c, 32bit/dslash/sse_su3dslash_w.c,
	  64bit/dslash/sse_su3dslash_w.c: Changed to support QMP-2

2004-10-18 16:39  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2004-10-18 16:39  edwards

	* other_libs/intel_sse_wilson_dslash/acinclude.m4: Changed to QMP-2

2004-10-18 14:52  tag chroma1-8-beta1

2004-10-18 14:52  edwards

	* mainprogs/main/Makefile.am: Fixed SSE_DWF_CG lines.

2004-10-18 14:51  edwards

	* mainprogs/main/propagator.cc: Fixed up diagnostic output comment.

2004-10-15 12:37  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/linop/lDeltaLs_w.cc,
	  lib/actions/ferm/linop/lDeltaLs_w.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.h, lib/io/qprop_io.h,
	  mainprogs/main/multi_propagator.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_mres_4d.cc, tests/m_res4d/mres4_tanh.xml.ini,
	  tests/m_res4d/prop_CONTFRAC_BORICI.xml.ini,
	  tests/m_res4d/prop_NEF_BORICI.linux-scalar-intel.xml,
	  tests/m_res4d/prop_NEF_BORICI.xml.ini,
	  tests/m_res4d/t_mres_4d.linux-scalar-intel.xml: Added t_mres4d
	  and lDeltaLs files for 4D m_res calculations

2004-10-15 06:54  bjoo

	* lib/io/eigen_io.cc, lib/io/eigen_io.h,
	  mainprogs/tests/t_ritz_KS.cc, tests/t_ritz/t_ritz_KS.xml.in,
	  tests/t_ritz/t_ritz_KS.xml.out: Change t_ritz_KS to deal with
	  other fermacts too. But only unprec-wilson case seems to work
	  really well... Further mods required

2004-10-14 10:19  mcneile

	* lib/actions/ferm/qprop/staggered_qprop.cc: Used the invParam
	  structure instead of separate variables, Took out the invType
	  enum that has been superseded by Balint's new system. This
	  function now compiles.

2004-10-13 18:17  ikuro

	* lib/: Makefile.am, meas/smear/stout_smear.cc,
	  util/gauge/eesu3.cc, util/gauge/expmat.cc, util/gauge/gauge.h:
	  Stout link smearing tested.

2004-10-12 11:29  edwards

	* lib/util/gauge/eesu3.cc: Ooops. This was accidentally
	  overwritten.

2004-10-12 11:28  edwards

	* lib/util/gauge/eesu3.h: Exact exponentiate a su3 lie algebra
	  element.

2004-10-08 09:20  bjoo

	* lib/: typelist.h, actions/ferm/qprop/fermact_qprop.cc,
	  actions/ferm/qprop/fermact_qprop_array.cc,
	  actions/ferm/qprop/prec_dwf_fermact_qprop_array_w.cc,
	  actions/ferm/qprop/prec_fermact_qprop.cc,
	  actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  actions/ferm/qprop/quarkprop4_w.cc,
	  actions/ferm/qprop/unprec_dwf_fermact_qprop_array_w.cc: IBM Fixes

2004-10-05 00:43  edwards

	* install_scripts/jlab/config_chroma_scalar: Scalar install script

2004-10-04 17:41  edwards

	* lib/objfactory.h: Removed debugging comments.

2004-10-03 22:59  edwards

	* lib/meas/pbp/: mespbg5p_w.cc, mespbp_s.cc, mespbp_w.cc,
	  pbg5p_w.cc, stagpbp_s.cc: Initial converted versions.

2004-10-02 21:21  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/prec_nef_fermact_array_w.cc,
	  fermacts/unprec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_nef_fermact_array_w.cc,
	  fermacts/unprec_nef_fermact_array_w.h,
	  linop/prec_dwf_linop_array_w.cc, linop/prec_dwf_linop_array_w.h,
	  linop/prec_dwf_linop_base_array_w.h,
	  linop/prec_nef_linop_array_w.cc, linop/prec_nef_linop_array_w.h,
	  linop/prec_ovdwf_linop_array_w.cc,
	  linop/prec_ovdwf_linop_array_w.h,
	  linop/unprec_dwf_linop_array_w.h,
	  linop/unprec_dwf_linop_base_array_w.h,
	  linop/unprec_nef_linop_array_w.cc,
	  linop/unprec_nef_linop_array_w.h,
	  linop/unprec_ovdwf_linop_array_w.cc,
	  linop/unprec_ovdwf_linop_array_w.h, qprop/nef_quarkprop4_w.cc:
	  Removed Dminus on array. Changed Dminus to also require N5 slice.
	  Changed NEF linop to require an array of b5/c5. Changed NEF
	  fermact to possibly except an array or scalar for b5/c5.

2004-10-01 23:43  edwards

	*
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc:
	  Added missing return 0.

2004-10-01 14:04  bjoo

	* tests/propagator/: propagator_ovdwf_v6.linux-scalar-intel.xml,
	  propagator_ovdwf_v6.xml.ini: Make check builds

2004-10-01 13:48  bjoo

	*
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_prec_contfrac.cc,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_tanh_v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_tanh_v6.xml.ini,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_zolo_v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_prec_ovlap_contfrac5d_zolo_v6.xml.ini,
	  tests/t_prec_contfrac/t_prec_contfrac.xml.ini: Preconditioned 5D
	  ContFrac works now

2004-10-01 02:29  bjoo

	* lib/actions/ferm/fermacts/: overlap_state.cc,
	  prec_ovlap_contfrac5d_fermact_array_w.cc: overlap_state.cc

2004-09-30 14:14  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/fermfactory_w.h,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovlap_contfrac5d_fermact_array_w.h,
	  mainprogs/main/propagator.cc: Added FermAct for preconditioned
	  contfrac. Hooked into propagator, but the propagator code doesnt
	  work just yet. Needs a good debugging

2004-09-30 10:52  bjoo

	* lib/: Makefile.am, actions/ferm/linop/linop_w.h,
	  actions/ferm/linop/prec_contfrac_linop_array_w.cc,
	  actions/ferm/linop/prec_contfrac_linop_array_w.h,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.cc,
	  actions/ferm/linop/prec_ovlap_contfrac5d_linop_array_w.h,
	  actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc:
	  Added in preconditioned contfrac linop -- again

2004-09-29 17:48  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovlap_contfrac5d_nonhermop_array_w.h,
	  lib/actions/ferm/linop/zolotarev5d_linop_array_w.cc,
	  lib/actions/ferm/linop/zolotarev5d_linop_array_w.h,
	  lib/actions/ferm/linop/zolotarev5d_nonhermop_array_w.cc,
	  lib/actions/ferm/linop/zolotarev5d_nonhermop_array_w.h,
	  mainprogs/main/propagator.cc,
	  tests/propagator/propagator_unprec_ovlap_contfrac5d_tanh_v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_unprec_ovlap_contfrac5d_tanh_v6.xml.ini:
	  Zolo5D Replaced. OvlapContFrac5DFermActArray in and working...
	  still need to test the odd cases tho

2004-09-28 13:39  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/io/enum_io/enum_coeffs_io.cc,
	  lib/io/enum_io/enum_coeffs_io.h,
	  lib/io/enum_io/enum_fermacttype_io.cc,
	  lib/io/enum_io/enum_fermacttype_io.h, lib/io/enum_io/enum_io.h,
	  tests/propagator/propagator_ovdwf_v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_ovdwf_v6.xml.ini,
	  tests/propagator/propagator_tanh4d_v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_tanh4d_v6.xml.ini: Fixed bug in
	  overlap_qprop. Unscaled Tanh and BORICI now get same correlator

2004-09-28 09:43  bjoo

	* NEWS, lib/io/fermact_paramio.cc, lib/io/fermact_paramio.h,
	  lib/io/zolotarev4d_fermact_paramio_w.cc,
	  lib/io/zolotarev4d_fermact_paramio_w.h: Removed
	  fermact_paramio.\[h,cc\] and zolotarev4d_fermact_paramio.\[h,cc\]

2004-09-28 09:01  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/io/overlap_state_info.cc, lib/io/overlap_state_info.h,
	  lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  lib/io/enum_io/enum_fermacttype_io.cc,
	  mainprogs/main/propagator.cc,
	  tests/propagator/propagator_zolo4d_v5.xml.ini,
	  tests/propagator/propagator_zolo4d_v6.linux-scalar-intel.xml,
	  tests/propagator/propagator_zolo4d_v6.xml.ini: Cleaned up...

2004-09-27 17:34  bjoo

	* lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc: Oopses

2004-09-27 16:18  bjoo

	* lib/actions/ferm/fermacts/: overlap_state.h,
	  ovlap_partfrac4d_fermact_w.cc, ovlap_partfrac4d_fermact_w.h:
	  Library compiles

2004-09-27 10:58  bjoo

	* lib/: Makefile.am, actions/ferm/fermacts/fermacts_w.h,
	  actions/ferm/fermacts/overlap_state.h,
	  actions/ferm/fermacts/ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/ovlap_contfrac5d_fermact_array_w.h,
	  actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_ovlap_contfrac5d_fermact_array_w.h,
	  io/enum_io/enum_fermacttype_io.cc,
	  io/enum_io/enum_fermacttype_io.h: Makefile.am

2004-09-27 08:03  bjoo

	* lib/actions/ferm/fermacts/: ovlap_contfrac5d_fermact_array_w.cc,
	  ovlap_contfrac5d_fermact_array_w.h,
	  zolotarev5d_fermact_array_w.cc, zolotarev5d_fermact_array_w.h:
	  MOved zolotarev5d_fermact_array_w.h to
	  ovlap_contfrac5d_fermact_array_w.h and also the .cc files

2004-09-27 08:00  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/ovlap_partfrac4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev_coeffs.cc,
	  lib/io/enum_io/enum_fermacttype_io.cc,
	  lib/io/enum_io/enum_fermacttype_io.h,
	  mainprogs/main/propagator.cc, mainprogs/main/propagator_comp.cc:
	  Renamed Zolotarev4D to OverlapPartFrac4D. Moved files to
	  ovlap_partfrac4d_fermact.xx

2004-09-26 20:34  edwards

	* lib/io/enum_io/: enum_cfgtype_io.cc, enum_cfgtype_io.h,
	  enum_coeffs_io.cc, enum_coeffs_io.h, enum_eigenvectype_io.cc,
	  enum_eigenvectype_io.h, enum_fermacttype_io.cc,
	  enum_fermacttype_io.h, enum_fermtype_io.cc, enum_fermtype_io.h,
	  enum_gaugeacttype_io.cc, enum_gaugeacttype_io.h,
	  enum_gaugebc_io.cc, enum_gaugebc_io.h, enum_heatbathtype_io.cc,
	  enum_heatbathtype_io.h, enum_inner_solver_type_io.cc,
	  enum_inner_solver_type_io.h, enum_invtype_io.cc,
	  enum_invtype_io.h, enum_md_integrator_type_io.cc,
	  enum_md_integrator_type_io.h, enum_proptype_io.cc,
	  enum_proptype_io.h, enum_qdpvolfmt_io.cc, enum_qdpvolfmt_io.h,
	  enum_seqsrctype_io.cc, enum_seqsrctype_io.h,
	  enum_simplebctype_io.cc, enum_simplebctype_io.h,
	  enum_srcsnktype_io.cc, enum_srcsnktype_io.h, enum_wavetype_io.cc,
	  enum_wavetype_io.h, enum_wvfkind_io.cc, enum_wvfkind_io.h:
	  Changed all  "const bool" to "bool" on return types since the
	  "const" is meaningless - and it makes the intel compiler
	  complain.

2004-09-24 12:22  bjoo

	* lib/Makefile.am, lib/fermact.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/io/overlap_state_info.cc, lib/io/overlap_state_info.h,
	  lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  mainprogs/main/propagator.cc: Added Zolo4D back in. Fixed State
	  info stuff. 5D guys next

2004-09-24 05:14  edwards

	* lib/fermact.h: Removed an errant doxygen comment.

2004-09-23 11:20  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  mainprogs/main/propagator.cc: Added Zolo4D back in but it doesnt
	  work yet

2004-09-23 10:29  bjoo

	* lib/: Makefile.am,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  io/zolotarev4d_fermact_paramio_w.cc,
	  io/zolotarev4d_fermact_paramio_w.h,
	  io/enum_io/enum_cfgtype_io.cc, io/enum_io/enum_cfgtype_io.h,
	  io/enum_io/enum_coeffs_io.cc, io/enum_io/enum_coeffs_io.h,
	  io/enum_io/enum_eigenvectype_io.cc,
	  io/enum_io/enum_eigenvectype_io.h,
	  io/enum_io/enum_fermacttype_io.cc,
	  io/enum_io/enum_fermacttype_io.h, io/enum_io/enum_fermtype_io.cc,
	  io/enum_io/enum_fermtype_io.h,
	  io/enum_io/enum_gaugeacttype_io.cc,
	  io/enum_io/enum_gaugeacttype_io.h, io/enum_io/enum_gaugebc_io.cc,
	  io/enum_io/enum_gaugebc_io.h, io/enum_io/enum_heatbathtype_io.cc,
	  io/enum_io/enum_heatbathtype_io.h,
	  io/enum_io/enum_inner_solver_type_io.cc,
	  io/enum_io/enum_inner_solver_type_io.h,
	  io/enum_io/enum_invtype_io.cc, io/enum_io/enum_invtype_io.h,
	  io/enum_io/enum_io.h, io/enum_io/enum_md_integrator_type_io.cc,
	  io/enum_io/enum_md_integrator_type_io.h,
	  io/enum_io/enum_proptype_io.cc, io/enum_io/enum_proptype_io.h,
	  io/enum_io/enum_qdpvolfmt_io.cc, io/enum_io/enum_qdpvolfmt_io.h,
	  io/enum_io/enum_seqsrctype_io.cc,
	  io/enum_io/enum_seqsrctype_io.h,
	  io/enum_io/enum_simplebctype_io.cc,
	  io/enum_io/enum_simplebctype_io.h,
	  io/enum_io/enum_srcsnktype_io.cc,
	  io/enum_io/enum_srcsnktype_io.h, io/enum_io/enum_type_map.h,
	  io/enum_io/enum_wavetype_io.cc, io/enum_io/enum_wavetype_io.h,
	  io/enum_io/enum_wvfkind_io.cc, io/enum_io/enum_wvfkind_io.h:
	  Added some checks to the map, added OverlapInnerSolverType enums

2004-09-22 13:24  bjoo

	* lib/Makefile.am, lib/fermbc.h, lib/gaugebc.h, lib/invtype.h,
	  lib/io/bc_io.cc, lib/io/bc_io.h, lib/io/gaugeact_io.cc,
	  lib/io/gaugeact_io.h, lib/io/gaugebc_io.cc, lib/io/gaugebc_io.h,
	  lib/io/io.h, lib/io/md_io.cc, lib/io/md_io.h, lib/io/param_io.cc,
	  lib/io/param_io.h, lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  lib/io/wilson_gaugeact_io.cc, lib/io/wilson_gaugeact_io.h,
	  lib/io/enum_io/enum_cfgtype_io.cc,
	  lib/io/enum_io/enum_cfgtype_io.h,
	  lib/io/enum_io/enum_coeffs_io.cc,
	  lib/io/enum_io/enum_coeffs_io.h,
	  lib/io/enum_io/enum_eigenvectype_io.cc,
	  lib/io/enum_io/enum_eigenvectype_io.h,
	  lib/io/enum_io/enum_fermacttype_io.cc,
	  lib/io/enum_io/enum_fermacttype_io.h,
	  lib/io/enum_io/enum_fermtype_io.cc,
	  lib/io/enum_io/enum_fermtype_io.h,
	  lib/io/enum_io/enum_gaugeacttype_io.cc,
	  lib/io/enum_io/enum_gaugeacttype_io.h,
	  lib/io/enum_io/enum_gaugebc_io.cc,
	  lib/io/enum_io/enum_gaugebc_io.h,
	  lib/io/enum_io/enum_heatbathtype_io.cc,
	  lib/io/enum_io/enum_heatbathtype_io.h,
	  lib/io/enum_io/enum_invtype_io.cc,
	  lib/io/enum_io/enum_invtype_io.h, lib/io/enum_io/enum_io.h,
	  lib/io/enum_io/enum_md_integrator_type_io.cc,
	  lib/io/enum_io/enum_md_integrator_type_io.h,
	  lib/io/enum_io/enum_proptype_io.cc,
	  lib/io/enum_io/enum_proptype_io.h,
	  lib/io/enum_io/enum_qdpvolfmt_io.cc,
	  lib/io/enum_io/enum_qdpvolfmt_io.h,
	  lib/io/enum_io/enum_seqsrctype_io.cc,
	  lib/io/enum_io/enum_seqsrctype_io.h,
	  lib/io/enum_io/enum_simplebctype_io.cc,
	  lib/io/enum_io/enum_simplebctype_io.h,
	  lib/io/enum_io/enum_srcsnktype_io.cc,
	  lib/io/enum_io/enum_srcsnktype_io.h,
	  lib/io/enum_io/enum_type_map.h,
	  lib/io/enum_io/enum_wavetype_io.cc,
	  lib/io/enum_io/enum_wavetype_io.h,
	  lib/io/enum_io/enum_wvfkind_io.cc,
	  lib/io/enum_io/enum_wvfkind_io.h, lib/meas/smear/sink_smear2.cc,
	  lib/meas/smear/sink_smear2.h, lib/meas/smear/wvfkind.h,
	  lib/meas/sources/srcsnktype.h, lib/meas/sources/wavetype.h,
	  lib/update/heatbath/su3hb.cc, lib/update/heatbath/su3hb.h,
	  lib/util/gauge/gaugeact_utils.cc, mainprogs/tests/t_io.cc: Added
	  in enum typemaps to do hopefully all the enum-related io through
	  the typemaps

2004-09-18 22:42  edwards

	* scripts/wallformfac_rhopi.pl: Added a "$" to $a in the
	  defined($a) line.

2004-09-18 22:41  edwards

	* lib/actions/ferm/qprop/nef_quarkprop4_w.cc: Only indented. NOTE:
	  this routine could soon (?) be merged as the general
	  dwf_quarkProp4 routine. Needs, currents, etc.

2004-09-18 22:39  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_w.cc,
	  prec_dwf_fermact_array_w.h, prec_dwf_fermact_base_array_w.h,
	  prec_nef_fermact_array_w.cc, prec_nef_fermact_array_w.h,
	  prec_ovdwf_fermact_array_w.cc, prec_ovdwf_fermact_array_w.h,
	  unprec_dwf_fermact_array_w.cc, unprec_dwf_fermact_array_w.h,
	  unprec_dwf_fermact_base_array_w.h, unprec_nef_fermact_array_w.cc,
	  unprec_nef_fermact_array_w.h, unprec_ovdwf_fermact_array_w.cc,
	  unprec_ovdwf_fermact_array_w.h: Changed linOp and linOpPV factory
	  methods to return a corresponding {prec,unprec} dwf-like base
	  class linop.	This unifies all the nef,dwf,ovdwf linops. Now have
	  a default Dminus routine.  Possible bug fix in
	  prec_ovdwf_fermact_array_w.cc - the linOpPV returned a "prec"
	  linOp instead of an unprec one.

2004-09-18 22:37  edwards

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.cc,
	  prec_dwf_linop_array_w.h, prec_dwf_linop_base_array_w.h,
	  prec_nef_linop_array_w.cc, prec_nef_linop_array_w.h,
	  prec_ovdwf_linop_array_w.cc, prec_ovdwf_linop_array_w.h,
	  unprec_dwf_linop_array_w.h, unprec_dwf_linop_base_array_w.h,
	  unprec_nef_linop_array_w.cc, unprec_nef_linop_array_w.h,
	  unprec_ovdwf_linop_array_w.cc, unprec_ovdwf_linop_array_w.h: Made
	  a EvenOddDWLinOpBaseArray and Unprec version to now be the base
	  class for the dwf,nef,ovdwf classes - now all unified. There is a
	  common Dminus routine.

2004-09-18 22:35  edwards

	* lib/actions/ferm/linop/linop_w.h: Added include of
	  {prec,unprec}_dwf_linop_base_array_w.h

2004-09-18 22:33  edwards

	* lib/Makefile.am: Added {prec,unprec}_dwf_linop_base_array_w.h

2004-09-18 18:08  edwards

	* lib/actions/ferm/linop/: prec_dwf_linop_base_array_w.h,
	  unprec_dwf_linop_base_array_w.h: Base class for prec and unprec
	  DWF-like linops.

2004-09-18 16:24  edwards

	* mainprogs/main/propagator.cc: Make a of nonRelProp for successful
	  us of dwf_quarkProp4 varieties.

2004-09-18 16:15  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_array_w.h,
	  unprec_dwf_fermact_base_array_w.h: Changed default behavior of
	  dwf_quarkProp4 to call quarkProp4.

2004-09-18 13:14  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_w.cc,
	  prec_nef_fermact_array_w.cc, prec_ovdwf_fermact_array_w.cc,
	  unprec_dwf_fermact_array_w.cc, unprec_nef_fermact_array_w.cc,
	  unprec_ovdwf_fermact_array_w.cc: Added registration to a DWF-base
	  factory in addition to the grandfather WilsonTypeFermActFactory.

2004-09-18 13:13  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_array_w.h,
	  unprec_dwf_fermact_base_array_w.h: Moved up dwf_quarkProp4 as a
	  member function.

2004-09-18 13:12  edwards

	* lib/actions/ferm/fermacts/fermfactory_w.h: Added DWF-like
	  factories

2004-09-18 13:12  edwards

	* lib/objfactory.h: Added a StringFactoryError (throws a string
	  instead of an Exception).

2004-09-18 13:11  edwards

	* mainprogs/main/propagator.cc: Uses new DW fermact-factories
	  instead of special cases.

2004-09-17 16:36  edwards

	* scripts/wallformfac_rhopi.pl: Changed sqrt to avoid minus signs.

2004-09-17 16:24  edwards

	* scripts/wallformfac_rhopi.pl: Flip sign back of Q^2.

2004-09-17 16:21  edwards

	* scripts/wallformfac_nucl.pl: Small bug fix - removed extra name.

2004-09-17 09:30  kostas

	* lib/actions/ferm/linop/: prec_nef_linop_array_w.h,
	  prec_ovdwf_linop_array_w.h, unprec_nef_linop_array_w.h,
	  unprec_ovdwf_linop_array_w.h: The NEF mres and propagator
	  calculation now works. The preconditioned OvDWF still has some
	  problems but it should be removed since the NEF variant does the
	  same job. The shamir DWF should be kept for optimization reasons

2004-09-16 18:32  kostas

	* mainprogs/main/propagator.cc: added NEF fermions to the
	  propagator

2004-09-16 17:17  edwards

	* mainprogs/main/propagator.cc: Bug fixes!

2004-09-16 15:30  edwards

	* scripts/wallformfac_nucl.pl: Converted to new config.pl format.

2004-09-16 15:29  kostas

	* lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  mainprogs/main/propagator.cc: attempt to fix the naming of
	  precOvDWF action

2004-09-16 15:28  edwards

	* scripts/wallformfac_rhopi.pl: Small bug fix.

2004-09-16 12:40  kostas

	* lib/: Makefile.am,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  actions/ferm/linop/prec_nef_linop_array_w.h,
	  actions/ferm/linop/unprec_nef_linop_array_w.h,
	  actions/ferm/qprop/nef_quarkprop4_w.cc: nef_quarkprop4 now
	  compiles

2004-09-16 11:20  kostas

	* lib/actions/ferm/: fermacts/prec_nef_fermact_array_w.cc,
	  fermacts/prec_nef_fermact_array_w.h,
	  fermacts/unprec_nef_fermact_array_w.cc,
	  fermacts/unprec_nef_fermact_array_w.h, qprop/nef_quarkprop4_w.cc:
	  fixed up mres for NEF

2004-09-16 02:23  edwards

	* scripts/wallformfac_rhopi.pl: Changed to support new config.pl
	  format.

2004-09-16 02:23  edwards

	* scripts/wallformfac_pion.pl: Added some diagnostics output

2004-09-15 22:06  edwards

	* scripts/wallformfac_pion.pl: Bug fix.

2004-09-15 21:58  edwards

	* scripts/wallformfac_pion.pl: Changed mass determination to use
	  dispersion relation.

2004-09-12 23:25  edwards

	* scripts/wallformfac_pion.pl: Fixed to truly support wall sources.

2004-09-12 16:18  edwards

	* scripts/: config.pl, wallformfac_pion.pl: Changes to properly
	  support fixed source_mom.

2004-09-11 20:37  edwards

	* scripts/: config.pl, wallformfac_pion.pl: Fixes/improvements.

2004-09-11 18:09  edwards

	* scripts/wallformfac_pion.pl: Removed usage of $abext.

2004-09-11 17:58  edwards

	* scripts/: config.pl, wallformfac_pion.pl: New extension
	  conventions.

2004-09-11 12:37  edwards

	* lib/actions/ferm/fermacts/overlap_fermact_base_w.h: Added Chroma
	  namespace

2004-09-11 12:37  edwards

	* lib/actions/ferm/fermacts/: zolotarev4d_fermact_w.cc,
	  zolotarev4d_fermact_w.h: Compiles in new IO format

2004-09-11 12:35  edwards

	* lib/: io/overlap_state_info.h,
	  actions/ferm/fermacts/overlap_state.h: Added Chroma namespace.

2004-09-09 11:52  edwards

	* mainprogs/tests/: t_disc_loop_s.cc, t_fermion_loop_w.cc,
	  t_precact.cc, t_precact_sse.cc, t_propagator_fuzz_s.cc,
	  t_propagator_nrqcd.cc, t_propagator_s.cc, t_propagator_w.cc:
	  Cleaned up calls to qprop to use InvertParam_t  struct.

2004-09-09 11:51  edwards

	* lib/actions/ferm/fermacts/: overlap_fermact_base_w.cc,
	  overlap_fermact_base_w.h, prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h, prec_dwf_fermact_array_w.cc,
	  prec_dwf_fermact_array_w.h, prec_nef_fermact_array_w.cc,
	  prec_nef_fermact_array_w.h, prec_ovdwf_fermact_array_w.cc,
	  prec_ovdwf_fermact_array_w.h, unprec_dwf_fermact_array_w.cc,
	  unprec_dwf_fermact_array_w.h, unprec_dwf_fermact_base_array_w.cc,
	  unprec_nef_fermact_array_w.cc, unprec_nef_fermact_array_w.h,
	  unprec_ovdwf_fermact_array_w.cc, unprec_ovdwf_fermact_array_w.h,
	  unprec_ovext_fermact_array_w.cc, unprec_ovext_fermact_array_w.h,
	  zolotarev4d_fermact_w.cc, zolotarev4d_fermact_w.h,
	  zolotarev5d_fermact_array_w.cc, zolotarev5d_fermact_array_w.h:
	  Changed them all to internally use  Mass instead of m_q and
	  OverMass instead of WilsonMass. Why? Just to be consistent with
	  each other. Now, the interface is closer to old days - the Mass
	  is used for quark mass.

2004-09-09 00:03  edwards

	* lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  mainprogs/main/propagator.cc: Renamed old fermactgrp to fermact
	  in ChromaProp_t and ChromaMultProp_t.  Now keep a single string
	  and snarf the FermAct when needed.

2004-09-09 00:01  edwards

	* mainprogs/main/spectrum_w.cc: Changed old FermActHandle to now
	  get mass via XML.

2004-09-08 19:59  kostas

	* mainprogs/tests/t_dwflocality.cc: fixed up the t_dwflocality.cc

2004-09-08 17:12  kostas

	* lib/meas/hadron/barQll_w.cc, lib/meas/hadron/barQll_w.h,
	  lib/meas/hadron/hadron_w.h, mainprogs/main/spectrumQll_w.cc:
	  Removed barQll stuff. Code not ready for integration

2004-09-08 11:39  edwards

	* lib/util/gauge/gaugeact_utils.cc: Added missing return 0.

2004-09-08 10:48  edwards

	* mainprogs/main/Makefile.am: Moved around problematic codes (multi
	  comp stuff) to EXTRA_PROGRAMS just to get make check to run.

2004-09-08 10:41  edwards

	* mainprogs/main/collect_propcomp.cc: Ifdef'ed out old
	  FermActHandle code to get to compile.

2004-09-08 10:32  edwards

	* lib/meas/hadron/barQll_w.h: Simple editing fixes just to get it
	  to compile.

2004-09-08 10:00  kostas

	* lib/meas/hadron/barQll_w.cc, lib/meas/hadron/barQll_w.h,
	  lib/meas/hadron/hadron_w.h, mainprogs/main/spectrumQll_w.cc:
	  Added Heavy light baryon spectrum code (Lambda_Q and Sigma_Q)

2004-09-08 00:12  edwards

	* lib/actions/ferm/fermacts/fermfactory_w.h: The object factories.

2004-09-07 22:48  edwards

	* lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/overlap_fermact_qprop_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/unprec_dwf_fermact_qprop_array_w.cc,
	  lib/io/io.h, lib/io/io_w.h, lib/io/param_io.h,
	  lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  lib/io/zolotarev4d_fermact_paramio_w.cc,
	  lib/io/zolotarev4d_fermact_paramio_w.h,
	  lib/io/zolotarev5d_fermact_paramio_w.cc,
	  lib/io/zolotarev5d_fermact_paramio_w.h,
	  mainprogs/main/propagator.cc: Big switch-over of fermact IO. New
	  fermact startup mechanism - now using Singleton Factory object.
	  Moved  quarkprop4 to be a virtual func with top level
	  FermionAction. Disconnected zolo4d and 5d fermacts temporarily.
	  Removing usage of old fermact and subsequently md,gaugeact  IO
	  mechanisms.

2004-09-07 22:45  edwards

	* lib/: fermact.h, fermbc.h, gaugebc.h, handle.h, invtype.h,
	  linearop.h, objfactory.h, state.h: Push all decls into the Chroma
	  namespace.

2004-09-07 22:44  edwards

	* lib/Makefile.am: Added all new top level .h files. Disconnected
	  zolo4d and 5d fermacts temporarily. Starting big disconnect of
	  any fermact IO !!

2004-09-07 22:41  tag chroma1-7-4

2004-09-07 22:41  edwards

	* lib/: util/gauge/gaugebc_utils.cc, io/md_io.cc: Added missing
	  return 0.

2004-09-07 22:39  edwards

	* lib/io/wilson_gaugeact_io.h: Removed meaningless "const"
	  qualifiers on return of enums.

2004-09-07 22:39  edwards

	* lib/io/gaugebc_io.h: Removed meaningless "const" qualifiers on
	  return of enums

2004-09-07 22:38  edwards

	* lib/io/gaugeact_io.h: Removed meaningless "const" qualifiers on
	  enums.

2004-09-07 22:37  edwards

	* lib/io/: gaugeact_io.cc, gaugebc_io.cc: Added missing return 0.

2004-09-07 22:33  edwards

	* lib/Makefile: Not sure why this was ever here.

2004-09-07 11:53  bjoo

	* lib/Makefile.am, lib/gaugebc.h,
	  lib/actions/ferm/linop/prec_contfrac_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_contfrac_linop_array_w.h,
	  lib/actions/gauge/wilson_gaugeact.h, lib/io/gaugeact_io.cc,
	  lib/io/md_io.cc, lib/io/pg_hmc_io.cc,
	  lib/io/wilson_gaugeact_io.cc,
	  lib/update/molecdyn/abs_hamiltonian.h,
	  lib/util/gauge/gaugeact_utils.cc,
	  lib/util/gauge/gaugeact_utils.h, mainprogs/tests/t_hmc_pg.cc:
	  PrecContFracLinOpArray now compies so I added it to Makefile.am

2004-09-07 10:52  bjoo

	* lib/actions/ferm/linop/: prec_contfrac_linop_array_w.cc,
	  prec_contfrac_linop_array_w.h: First cut at preconditioned cont
	  frac operators

2004-09-06 16:55  edwards

	* lib/update/molecdyn/abs_hyb_int.h: Bug fix - added missing
	  "public" qualifier on derived class.

2004-09-06 12:17  edwards

	* NEWS: Info on 1.7.4

2004-09-06 12:17  edwards

	* mainprogs/tests/t_precact_sse.cc: Tests of prec. dwf operator.

2004-09-06 12:16  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc: More
	  changes. Probably need to undo some of these.

2004-09-06 06:45  bjoo

	* mainprogs/tests/t_ritz_KS.cc: Fixed malformed XML problem

2004-09-06 05:38  bjoo

	* lib/actions/ferm/fermacts/zolotarev_coeffs.cc: Tony and Waheem
	  fix for sncndnK

2004-09-03 10:24  kostas

	* lib/actions/ferm/: linop/prec_nef_linop_array_w.h,
	  linop/prec_ovdwf_linop_array_w.h,
	  linop/unprec_nef_linop_array_w.h,
	  linop/unprec_ovdwf_linop_array_w.h, qprop/nef_quarkprop4_w.cc,
	  qprop/nef_quarkprop4_w.h: added mres measurement for NEF fermions

2004-09-02 18:39  kostas

	* lib/actions/ferm/: linop/prec_nef_linop_array_w.h,
	  linop/prec_ovdwf_linop_array_w.h,
	  linop/unprec_nef_linop_array_w.h,
	  linop/unprec_ovdwf_linop_array_w.h, qprop/nef_quarkprop4_w.cc,
	  qprop/nef_quarkprop4_w.h: started adding the mres/Za measurement
	  for NEF and (OvDWF)

2004-09-02 16:00  kostas

	* lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h,
	  mainprogs/tests/t_neflinop.cc: Fixed all bugs for the
	  preconditioned ovdwf and the nef action

2004-09-02 12:00  bjoo

	* lib/Makefile, lib/Makefile.am,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/fermfactory_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/overlap_fermact_qprop_w.cc,
	  lib/actions/ferm/qprop/prec_dwf_fermact_qprop_array_w.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/unprec_dwf_fermact_qprop_array_w.cc,
	  mainprogs/main/propagator.cc: Trolled beneath the fermact
	  mountains and changed the invocations of the inverters to conform
	  to the new inverter interface (invParam -- vs RsdCG, MaxCG and
	  friends) - also in the qprop_files too.

	  I HAVE REMOVED ZOLOTAREV4D and ZOLOTAREV5D from the build as
	  these will need extensive reworking to keep those params inside
	  them (simply too many).  I will get them to conform later. Use
	  the production branch if you need access to those

	  I have added the various LOKI based files (Alexandrescu) to the
	  Makefile.am so that things install correctly.

	  I made the propagator code go through the factory invokation to
	  do a propagator calculation with prec wilson fermions.

	  Interestingly the linkage_hack appeared to be optimised away in
	  its old form. I turned it into a function that returns the "foo"
	  within, so it cannot be compiled away. Interestingly, it still
	  doesn't actually need to be CALLED.

	  Main achievements:	  Library compiles	  Propagator runs
	  with suitable fermacts (I should check DWF etc)

2004-09-01 19:35  kostas

	* lib/actions/ferm/linop/prec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc,
	  mainprogs/tests/t_neflinop.cc: fixed some bugs in the precNEF
	  precOvDWF codes... It still neeeds work!

2004-09-01 12:16  edwards

	* lib/actions/ferm/fermacts/fermfactory_w.h: Factory objects.

2004-09-01 11:13  edwards

	* lib/Makefile.am, lib/fermact.h, lib/invtype.h, lib/objfactory.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_sse_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_w.cc, lib/io/io.h,
	  lib/io/io_w.h, lib/io/param_io.h, lib/io/qprop_io.cc,
	  lib/io/qprop_io.h, lib/io/zolotarev4d_fermact_paramio_w.cc,
	  lib/io/zolotarev4d_fermact_paramio_w.h,
	  lib/io/zolotarev5d_fermact_paramio_w.cc,
	  lib/io/zolotarev5d_fermact_paramio_w.h,
	  mainprogs/main/propagator.cc: Start of major changes to support
	  maps.

2004-08-31 23:32  kostas

	* lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/linop/prec_nef_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_nef_linop_array_w.h,
	  mainprogs/tests/t_neflinop.cc: fixed bugs in uprec NEF linop

2004-08-31 16:38  kostas

	* mainprogs/tests/Makefile.am: fixed makefile

2004-08-31 00:40  tag chroma1-7-3

2004-08-31 00:40  edwards

	* NEWS: Info on 1.7.3

2004-08-24 16:56  kostas

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  mainprogs/tests/Makefile.am: Fixed makefiles to link in the nef
	  action

2004-08-23 17:07  kostas

	* aclocal.m4, configure,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_nef_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_nef_fermact_array_w.h,
	  mainprogs/tests/t_neflinop.cc: Added the fermact codes for NEF

2004-08-23 00:04  edwards

	* lib/: objfactory.h, objfunctor.h, singleton.h, typeinfo.h,
	  typelist.h, typemanip.h, typetraits.h: Typelist manipulation,
	  object factory and functor support, as well as singleton support.

2004-08-20 21:42  tag chroma1-7-2

2004-08-20 21:42  edwards

	* NEWS: Info on 1.7.2

2004-08-20 21:40  edwards

	* lib/meas/hadron/walldeltaff_w.cc,
	  lib/meas/hadron/walldeltaff_w.h,
	  lib/meas/hadron/walldeltapff_w.cc,
	  lib/meas/hadron/walldeltapff_w.h, lib/meas/hadron/wallff_w.cc,
	  lib/meas/hadron/wallff_w.h, lib/meas/hadron/wallnuclff_w.cc,
	  lib/meas/hadron/wallnuclff_w.h, lib/meas/hadron/wallpionff_w.cc,
	  lib/meas/hadron/wallpionff_w.h, lib/meas/hadron/wallrhoff_w.cc,
	  lib/meas/hadron/wallrhoff_w.h, lib/meas/hadron/wallrhopiff_w.cc,
	  lib/meas/hadron/wallrhopiff_w.h, mainprogs/main/wallformfac.cc:
	  Changed to allow wall-source.

2004-08-20 21:33  tag chroma1-7-1

2004-08-20 21:33  edwards

	* NEWS: Info on 1.7.1

2004-08-20 16:29  kostas

	* lib/: Makefile.am, actions/ferm/linop/linop_w.h,
	  actions/ferm/linop/prec_nef_linop_array_w.h,
	  actions/ferm/linop/unprec_nef_linop_array_w.cc,
	  actions/ferm/linop/unprec_nef_linop_array_w.h: fixed bugs
	  modified Makefiles for compilation

2004-08-20 09:45  bjoo

	* lib/Makefile.am, lib/io/gaugeact_io.cc, lib/io/mc_io.cc,
	  lib/io/mc_io.h, lib/io/md_io.cc, lib/io/md_io.h,
	  lib/io/pg_hmc_io.cc, lib/io/pg_hmc_io.h,
	  lib/update/molecdyn/exact_pg_hamiltonian.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_hamsys.cc,
	  mainprogs/tests/t_hmc_pg.cc: Added files to read Leapfrog
	  Parameters, MD iter parameters, and a sample PureGaugeHMC param
	  struct

2004-08-19 12:41  edwards

	* lib/meas/pbp/ovpbg5p_w.cc: First version of overlap psi-bar-psi.

2004-08-19 12:39  edwards

	* tests/wallformfac/test_wallformfac_v3.csh: Test code for
	  wall_source.

2004-08-19 12:32  bjoo

	* lib/Makefile.am, lib/gaugeact.h, lib/gaugebc.h,
	  lib/actions/gauge/wilson_gaugeact.h, lib/io/bc_io.cc,
	  lib/io/bc_io.h, lib/io/gaugeact_io.cc, lib/io/gaugeact_io.h,
	  lib/io/gaugebc_io.cc, lib/io/gaugebc_io.h,
	  lib/io/wilson_gaugeact_io.cc, lib/io/wilson_gaugeact_io.h,
	  lib/util/gauge/gaugebc_utils.cc, lib/util/gauge/gaugebc_utils.h,
	  mainprogs/tests/t_hamsys.cc: Added readers for wilson fermact and
	  gauge bcs

2004-08-13 12:21  edwards

	* lib/meas/sources/: d_src_w.cc.~1.2.~, d_src_w.h.~1.1.~,
	  p_src_w.cc.~1.3.~, p_src_w.h.~1.1.~: Inadvertently checked in.

2004-08-12 17:36  ikuro

	* mainprogs/main/qqq_w.cc: [no log message]

2004-08-12 17:31  ikuro

	* mainprogs/main/make_source.cc: [no log message]

2004-08-12 16:55  ikuro

	* lib/meas/sources/: d_src_w.cc, d_src_w.cc.~1.2.~, d_src_w.h,
	  d_src_w.h.~1.1.~, p_src_w.cc, p_src_w.cc.~1.3.~, p_src_w.h,
	  p_src_w.h.~1.1.~: [no log message]

2004-08-10 10:32  edwards

	* lib/actions/ferm/linop/lg5eps_w.cc: Added START/END_CODE.

2004-08-10 09:58  bjoo

	* mainprogs/tests/t_hamsys_ferm.cc: Runs without SZIN input files
	  now

2004-08-10 09:45  bjoo

	* install_scripts/NERSC/configure_chroma.sh: NERSC Configure script
	  in install_scripts

2004-08-10 09:27  bjoo

	* lib/Makefile.am, lib/fermact.h, lib/gaugeact.h, lib/lib.h,
	  lib/actions/gauge/wilson_gaugeact.cc,
	  lib/actions/gauge/wilson_gaugeact.h, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_hamsys.cc, mainprogs/tests/t_hamsys_ferm.cc:
	  Merge in HMC stuff

2004-08-10 09:21  bjoo

	* lib/actions/ferm/invert/: invcg1.cc, invcg2.cc: Made the
	  inverters quiet

2004-08-10 09:21  bjoo

	* lib/actions/ferm/fermacts/: prec_wilson_fermact_w.cc,
	  unprec_wilson_fermact_w.cc: Got Force Terms Working

2004-08-10 09:20  bjoo

	* lib/update/: field_state.h, update.h: Now have PureGauge and
	  Degenerate Two Flavor pseudofermion HMC

2004-08-10 09:18  bjoo

	* lib/update/molecdyn/: abs_hamiltonian.h, abs_hmc.h,
	  abs_hyb_int.h, abs_symp_updates.h,
	  degen_two_flavor_ferm_hamiltonian.h, exact_pg_hamiltonian.h,
	  ferm_hmc.h, ferm_leapfrog.h, ferm_refresh.cc, ferm_refresh.h,
	  ferm_symp_updates.h, global_metropolis_accrej.cc,
	  global_metropolis_accrej.h, molecdyn.h, mom_refresh.cc,
	  mom_refresh.h, pg_hmc.h, pg_leapfrog.h: Shuffled things around

2004-08-08 07:12  kostas

	* lib/actions/ferm/linop/: prec_nef_linop_array_w.cc,
	  prec_nef_linop_array_w.h, unprec_nef_linop_array_w.cc,
	  unprec_nef_linop_array_w.h: Added the unpreconditioned NEF
	  fermions. Corrected bugs for the preconditioned

2004-08-08 06:29  kostas

	* lib/actions/ferm/linop/: prec_nef_linop_array_w.cc,
	  prec_nef_linop_array_w.h: Added NEF fermions

2004-08-06 23:28  edwards

	* lib/io/: param_io.cc, param_io.h: Added heatbath support.

2004-08-06 23:26  edwards

	* lib/update/heatbath/: su3hb.cc, su3hb.h, su3over.cc, su3over.h:
	  Heatbath codes now compile.

2004-08-06 23:25  edwards

	* lib/Makefile.am: Added su3hb.{h,cc} and su3over.{h,cc}

2004-08-05 11:56  bjoo

	* lib/actions/ferm/fermacts/: prec_wilson_fermact_w.cc,
	  unprec_wilson_fermact_w.cc: Added Force terms

2004-08-03 17:48  ikuro

	* lib/util/ferm/diractodr.cc: Matrix redefined.

2004-08-03 13:07  edwards

	* README: Info on release compatibility.

2004-08-03 12:22  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: Minor changes for the
	  testing framework

2004-08-03 12:18  mcneile

	* mainprogs/tests/Makefile.am: I have added a target for the
	  xmldiff based testing framework.  This should be orthogonal to
	  the rest of the development of chroma.

2004-08-03 12:15  mcneile

	* tests/t_asqtad_prop/: DATA, t_propagator_fuzz_s_METRIC.xml: These
	  are modified filess for the xmldiff testing framework.  At first
	  just add these for the staggered part of the code.

2004-08-03 12:11  mcneile

	* scripts/run_xmldiff.pl: This is the first version of the xmldiff
	  script. At the momnt I am going to use this for the staggered
	  part of the chroma library.

2004-08-03 12:02  edwards

	* lib/io/readszinqprop_w.cc: Added include of qdp_util.h

2004-08-02 10:57  bjoo

	* lib/: actions/ferm/linop/lwldslash_w_pab.cc,
	  actions/ferm/qprop/fermact_qprop.cc,
	  actions/ferm/qprop/prec_fermact_qprop.cc, io/readszinqprop_w.cc,
	  meas/hadron/walldeltapff_w.cc, update/update.h,
	  update/molecdyn/molecdyn.h: Should now configure fine on the IBM
	  in single precision

2004-08-02 06:08  bjoo

	* lib/update/molecdyn/abs_mom_refresh.h: Removed this as it is no
	  longer used

2004-08-01 16:30  tag chroma1-7-0

2004-08-01 16:30  edwards

	* NEWS: Info on 1.7.0

2004-08-01 16:29  edwards

	* configure: Induced changes

2004-08-01 16:27  edwards

	* mainprogs/tests/t_precact_sse.cc: Test code.

2004-08-01 16:27  edwards

	* mainprogs/: main/Makefile.am, tests/Makefile.am: Added SSE_DWF_CG
	  support.

2004-08-01 16:23  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_sse_w.cc,
	  prec_dwf_fermact_array_sse_w.h: Added SSE_DWF_CG support.

2004-08-01 16:22  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.cc:
	  Removed unused code. This is in the qprop dir.

2004-08-01 16:22  edwards

	* lib/chroma_config_internal.h.in: Autogenerated. Now has
	  SSE_DWF_CG flag.

2004-08-01 16:21  edwards

	* lib/Makefile.am: Added build_sse_dwf_cg support along with new
	  .cc and .h files. Moved some .h files to resp. cond. build areas.

2004-08-01 16:19  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2004-08-01 16:19  edwards

	* configure.ac: Added --enable-sse-dwf-cg option and configure
	  support.

2004-08-01 16:17  edwards

	* other_libs/Makefile.am: Added intel_sse_dwf_cg dir.

2004-07-29 11:11  edwards

	* INSTALL.ibm: Examples for building on an ibm.

2004-07-29 10:33  bjoo

	* lib/update/molecdyn/: abs_hamiltonian.h, abs_hmc.h,
	  abs_mom_refresh.h, abs_symp_updates.h, exact_pg_hamiltonian.h,
	  mom_refresh.h, pg_hmc.h: Added separate momentum refresh class

2004-07-27 23:56  tag chroma1-6-2

2004-07-27 23:56  edwards

	* NEWS: Info on 1.6.2

2004-07-27 23:47  edwards

	* lib/actions/ferm/: invert/inv_borici_w.cc,
	  invert/inv_gmresr_cg_array.cc, invert/inv_minres_array.cc,
	  invert/inv_rel_cg1.cc, invert/invbicg.cc, invert/invcg1.cc,
	  invert/invcg1_array.cc, invert/invcg2.cc, invert/invcg2_array.cc,
	  invert/invmr.cc, invert/invsumr.cc, invert/minv_rel_cg.cc,
	  invert/minv_rel_sumr.cc, invert/minvcg.cc, invert/minvsumr.cc,
	  linop/asq_dsl_s.cc, linop/asqtad_mdagm_s.cc,
	  linop/fat7_links_s.cc, linop/lg5eps_double_pass_w.cc,
	  linop/lovddag_double_pass_w.cc, linop/lovddag_w.cc,
	  linop/lovlap_double_pass_w.cc, linop/lovlapms_w.cc,
	  linop/naik_term_s.cc, linop/overlapbu_linop_w.cc,
	  linop/prec_dwf_linop_array_w.cc,
	  linop/prec_ovdwf_linop_array_w.cc,
	  linop/zolotarev5d_linop_array_w.cc: Added START_CODE(),
	  END_CODE().

2004-07-27 23:08  edwards

	* mainprogs/main/: ExampleBuildingBlocks.cc, bar3ptfn.cc,
	  cfgtransf.cc, collect_multi_propcomp.cc, collect_propcomp.cc,
	  hypsmear.cc, make_source.cc, multi_propagator.cc,
	  multi_propagator_comp.cc, propagator.cc, propagator_comp.cc,
	  qpropadd.cc, qpropgfix.cc, qproptransf.cc, qproptrev.cc,
	  qqq_w.cc, seqsource.cc, sink_smearing.cc, spectrum_w.cc,
	  wallformfac.cc: Added START/END_CODE to all routines. Changed
	  some to not pass an argument.

2004-07-27 22:55  edwards

	* mainprogs/main/Makefile.am: Ooops, accidentally removed
	  seqsource. Added it back in.

2004-07-27 22:52  edwards

	* mainprogs/main/: Makefile.am, dwf_seqprop.cc, my_qqq.cc,
	  seqprop.cc, seqprop_collect.cc, seqprop_comp.cc: Removed obsolete
	  programs.

2004-07-27 22:38  edwards

	* lib/meas/glue/wilslp.cc: Made t_dir an argument.

2004-07-27 22:38  edwards

	* lib/: chromabase.h,
	  actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  actions/ferm/fermacts/prec_dwf_fermact_base_array_w.cc,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/stag_fermact_s.cc,
	  actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc,
	  actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  actions/ferm/invert/invbicg.cc, actions/ferm/invert/invmr.cc,
	  actions/ferm/invert/minv_rel_cg.cc,
	  actions/ferm/invert/minvcg.cc,
	  actions/ferm/linop/asqtad_mdagm_s.cc,
	  actions/ferm/linop/dwffld_w.cc, actions/ferm/linop/lmpsim_w.cc,
	  actions/ferm/linop/lwldslash_w.cc,
	  actions/ferm/linop/lwldslash_w_pab.cc,
	  actions/ferm/linop/lwldslash_w_sse.cc,
	  actions/ferm/linop/overlapbu_linop_w.cc,
	  actions/ferm/linop/prec_parwilson_linop_w.cc,
	  actions/ferm/linop/prec_wilson_linop_w.cc,
	  actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  actions/ferm/linop/unprec_wilson_linop_w.cc,
	  actions/ferm/linop/zolotarev5d_linop_array_w.cc,
	  actions/ferm/linop/zolotarev5d_nonhermop_array_w.cc,
	  actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  actions/ferm/qprop/fermact_qprop.cc,
	  actions/ferm/qprop/fermact_qprop_array.cc,
	  actions/ferm/qprop/overlap_fermact_qprop_w.cc,
	  actions/ferm/qprop/prec_dwf_fermact_qprop_array_w.cc,
	  actions/ferm/qprop/prec_fermact_qprop.cc,
	  actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  actions/ferm/qprop/quarkprop4_multi_w.cc,
	  actions/ferm/qprop/quarkprop4_w.cc,
	  actions/ferm/qprop/staggered_qprop.cc,
	  actions/ferm/qprop/unprec_dwf_fermact_qprop_array_w.cc,
	  actions/ferm/qprop/unprec_qprop_w.h,
	  actions/gauge/wilson_gaugeact.cc, io/kyugauge_io.cc,
	  io/kyuqprop_io.cc, io/readmilc.cc, io/readszin.cc,
	  io/writemilc.cc, io/writeszin.cc, meas/eig/eig_spec.cc,
	  meas/eig/eig_spec_array.cc, meas/eig/gramschm.cc,
	  meas/eig/gramschm_array.cc, meas/eig/ritz.cc,
	  meas/eig/ritz_array.cc, meas/eig/sn_jacob.cc,
	  meas/eig/sn_jacob_array.cc, meas/gfix/axgauge.cc,
	  meas/gfix/coulgauge.cc, meas/gfix/grelax.cc,
	  meas/gfix/polar_dec.cc, meas/gfix/rot_colvec.cc,
	  meas/glue/fuzwilp.cc, meas/glue/mesplq.cc, meas/glue/polylp.cc,
	  meas/hadron/barcomp_w.cc, meas/hadron/barhqlq_w.cc,
	  meas/hadron/barseqsrc_w.cc, meas/hadron/baryon_w.cc,
	  meas/hadron/curcor2_w.cc, meas/hadron/formfac_w.cc,
	  meas/hadron/hybmeson_w.cc, meas/hadron/mesons_w.cc,
	  meas/hadron/mesonseqsrc_w.cc, meas/hadron/seqpiontest_w.cc,
	  meas/hadron/walfil_s.cc, meas/hadron/walfil_w.cc,
	  meas/hadron/wall_qprop_w.cc, meas/hadron/walldeltaff_w.cc,
	  meas/hadron/walldeltapff_w.cc, meas/hadron/wallff_w.cc,
	  meas/hadron/wallnuclff_w.cc, meas/hadron/wallpionff_w.cc,
	  meas/hadron/wallrhoff_w.cc, meas/hadron/wallrhopiff_w.cc,
	  meas/smear/ape_smear.cc, meas/smear/hyp_smear.cc,
	  meas/smear/sink_smear2.cc, meas/smear/stout_smear.cc,
	  update/heatbath/mciter.cc, update/heatbath/mciter32.cc,
	  update/heatbath/monte.cc, update/heatbath/su3hb.cc,
	  update/heatbath/su3over.cc, update/molecdyn/mese/clmesferm_w.cc,
	  update/molecdyn/mese/mese.cc, update/molecdyn/mese/mesferm_w.cc,
	  update/molecdyn/mese/mesmom.cc,
	  update/molecdyn/mese/wlmesferm_w.cc,
	  update/molecdyn/noise/frmnse_w.cc,
	  update/molecdyn/noise/wlfrmnse_w.cc,
	  update/molecdyn/step/camptrj.cc,
	  update/molecdyn/step/endoftrj.cc, update/molecdyn/step/hybtrj.cc,
	  update/molecdyn/step/interpol.cc, update/molecdyn/step/leapp.cc,
	  update/molecdyn/step/leappmx.cc, update/molecdyn/step/leapu.cc,
	  update/molecdyn/step/refrsh.cc, update/molecdyn/step/rhybtrj.cc,
	  util/ferm/gammasgn_w.cc, util/gauge/eesu2.cc,
	  util/gauge/eesu3.cc, util/gauge/eeu1.cc, util/gauge/expm12.cc,
	  util/gauge/expmat.cc, util/gauge/hotst.cc, util/gauge/phfctr.cc,
	  util/gauge/reunit.cc, util/gauge/rgauge.cc,
	  util/gauge/su2extract.cc, util/gauge/su3proj.cc,
	  util/gauge/sun_proj.cc, util/gauge/sunfill.cc,
	  util/gauge/taproj.cc, util/info/printgeom.cc,
	  util/info/proginfo.cc: Changed {START,END}_CODE("foo") to
	  {START,END}_CODE().

2004-07-27 20:50  tag chroma1-6-1

2004-07-27 20:50  edwards

	* NEWS: Info on 1.6.1

2004-07-27 20:46  edwards

	* lib/meas/smear/: sink_smear2.cc, sink_smear2.h, sink_smear2_w.cc,
	  sink_smear2_w.h, smear.h: Changed sink_smear2_w.{h,cc} to
	  sink_smear2.{h,cc}. Now a fermion independent code.

2004-07-27 20:44  edwards

	* lib/Makefile.am: Added missing baryon_s.h . Changed
	  sink_smear2_w.{h,cc} to sink_smear.{h,cc}.

2004-07-27 12:09  edwards

	* lib/update/molecdyn/old/hamilton.h: Fixed to use
	  getFermBC().zero().

2004-07-27 10:34  edwards

	* tests/wallformfac/test_wallformfac_v1.csh: Updated test script.

2004-07-27 02:15  tag chroma1-6-0

2004-07-27 02:15  edwards

	* aclocal.m4, configure: Induced changes.

2004-07-27 02:15  edwards

	* configure.ac: Changed to 1.6.0

2004-07-27 02:14  edwards

	* NEWS: Info on 1.6.0

2004-07-27 02:03  edwards

	* lib/actions/ferm/: invert/invcg2.cc,
	  invert/invcg2_timing_hacks.cc, linop/dwffld_w.cc,
	  linop/dwffld_w.h, linop/lwldslash_w_pab.h,
	  linop/lwldslash_w_sse.cc, linop/lwldslash_w_sse.h,
	  qprop/fermact_qprop.cc, qprop/prec_fermact_qprop.cc,
	  qprop/quarkprop4_w.cc, qprop/quarkprop4_w.h: Removed uses of
	  LatticeDWFermion.

2004-07-27 02:02  edwards

	* lib/actions/ferm/linop/: unprec_dwf_linop_w.cc,
	  unprec_dwf_linop_w.h: Removed PDWVector like classes - e.g.
	  LatticeDWFermion.

2004-07-27 02:01  edwards

	* lib/actions/ferm/linop/: ldwfdslash_w.cc, ldwfdslash_w.h: No
	  longer using PDWVector like classes.

2004-07-27 02:00  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_w.cc,
	  prec_dwf_fermact_base_w.h, unprec_dwf_fermact_base_w.cc,
	  unprec_dwf_fermact_base_w.h, unprec_dwf_fermact_w.cc,
	  unprec_dwf_fermact_w.h: Removed DWVector like classes. Now only
	  support arrays of fermions.

2004-07-27 02:00  edwards

	* lib/chromabase.h: Removed chroma specific def files. Changed
	  START_CODE/END_CODE to potentially use profiling.

2004-07-27 01:59  edwards

	* lib/: chroma_scalarsite_defs.h, chroma_scalarsite_dwdefs.h: No
	  longer use chroma specific def routines.

2004-07-27 01:58  tag intel_sse_dslash1-3-0

2004-07-27 01:58  edwards

	* other_libs/intel_sse_wilson_dslash/NEWS: Info on 1.3.0

2004-07-27 01:56  edwards

	* other_libs/intel_sse_wilson_dslash/src/:
	  parscalar/packer/nopad/qdp_packer.cc,
	  parscalar/packer/p4_pad/qdp_packer.cc,
	  scalar/packer/nopad/qdp_packer.cc,
	  scalar/packer/p4_pad/qdp_packer.cc: Changed qdp_packer to use
	  new/old mem. layout.

2004-07-27 01:54  edwards

	* configure.ac: Changes to 1.7

2004-07-27 01:53  edwards

	* aclocal.m4, configure: Induced changes.

2004-07-27 01:53  edwards

	* lib/Makefile.am: Removed defs.h files. Removed some more
	  PDWVector like classes.

2004-07-27 01:01  edwards

	* lib/actions/ferm/linop/asq_dsl_s.cc: Added missing END_CODE.

2004-07-27 01:00  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Moved around START_CODE.

2004-07-27 00:58  edwards

	* lib/meas/glue/wilslp.cc: Added missing END_CODE.

2004-07-26 23:10  edwards

	* tests/spectrum_w/spectrum_w_v10.linux-scalar-intel.xml.gz:
	  Updated to version 11 *output*.

2004-07-23 14:08  dru

	* mainprogs/main/hypsmear.cc: I fixed a silly mistake which I
	  initially missed.  The case num_smear = 1 worked correctly, so no
	  one would have noticed, but the cases num_smear != 1 didn't work
	  correctly.  In particular, num_smear = 0 didn't work right.
	  These cases should work correctly now.

2004-07-23 11:26  bjoo

	* mainprogs/tests/t_hamsys.cc: Changed no of trajectories to 1000

2004-07-23 11:20  bjoo

	* lib/Makefile, lib/update/molecdyn/abs_hmc.h,
	  lib/update/molecdyn/abs_hyb_int.h, lib/update/molecdyn/pg_hmc.h,
	  lib/update/molecdyn/pg_leapfrog.h, lib/util/gauge/gauge.h,
	  mainprogs/tests/t_hamsys.cc: Found a typo when moving the headers
	  about

2004-07-23 09:37  bjoo

	* lib/update/molecdyn/exact_pg_hamiltonian.h: An actual pure gauge
	  hamiltonian

2004-07-23 08:44  bjoo

	* lib/util/gauge/expsu3.h: Added expsu3.h

2004-07-23 08:37  bjoo

	* aclocal.m4, configure, lib/Makefile.am, lib/gaugeact.h,
	  lib/lib.h, lib/actions/gauge/dsdu.cc, lib/actions/gauge/gauge.h,
	  lib/actions/gauge/wilson_gaugeact.cc,
	  lib/actions/gauge/wilson_gaugeact.h, lib/io/readmilc.cc,
	  lib/meas/glue/mesplq.cc, lib/update/update.h,
	  lib/update/molecdyn/abs_hyb_int.h,
	  lib/update/molecdyn/abs_symp_updates.h,
	  lib/update/molecdyn/pg_hmc.h,
	  lib/update/molecdyn/pg_symp_updates.h, lib/util/gauge/eesu3.cc,
	  lib/util/gauge/expmat.cc, lib/util/gauge/expmat.h,
	  lib/util/gauge/expsu3.cc, lib/util/gauge/rgauge.cc,
	  lib/util/gauge/taproj.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_hamsys.cc: Added in HMC Stuff moved to new
	  place

2004-07-23 08:10  bjoo

	* lib/update/molecdyn/: abs_hamiltonian.h, abs_hmc.h,
	  abs_hyb_int.h, abs_symp_updates.h, molecdyn.h, pg_hmc.h,
	  pg_leapfrog.h, pg_symp_updates.h: Pure Gauge HMC files

2004-07-23 07:56  bjoo

	* lib/update/: abs_hamiltonian.h, abs_symp_updates.h,
	  field_state.h, hamiltonian.h, hmc_classes.h, hyb_int.h, pg_hmc.h,
	  symp_updates.h: Moved these into the molecdyn dir

2004-07-23 07:54  bjoo

	* lib/update/molecdyn/: hamilton.h, hybrid.h, hybrid_orig.cc,
	  hywrmup_orig.cc, molecdyn.h, old/hamilton.h, old/hybrid.h,
	  old/molecdyn.h, old/wils_hamsys_w.h: Moved Roberts initial files
	  into the old directory

2004-07-19 12:04  bjoo

	* mainprogs/tests/t_hamsys.cc: Test program for HMC

2004-07-19 12:03  bjoo

	* lib/update/: abs_symp_updates.h, hamiltonian.h, hmc_classes.h,
	  hyb_int.h, pg_hmc.h, molecdyn/hamilton.h: Mechanics now works but
	  doesnt converge right

2004-07-19 12:02  bjoo

	* lib/actions/gauge/wilson_gaugeact.cc: Compiles but force term and
	  S are probably broken

2004-07-16 11:56  bjoo

	* mainprogs/tests/t_hamsys.cc: Lousy test file

2004-07-16 11:55  bjoo

	* lib/update/: abs_hamiltonian.h, abs_symp_updates.h,
	  field_state.h, hamiltonian.h, hyb_int.h, symp_updates.h: First
	  cut stuff

2004-07-14 15:56  dru

	* tests/hypsmear/example_hypsmear_input_v3.xml: I am adding an
	  example input "DATA" file for version 3 of hypsmear.

2004-07-14 14:38  dru

	* mainprogs/main/hypsmear.cc:
	  I added a version 3 which allows a variable number of hyp
	  smearing iterations.	I checked that the original code with
	  version 2 agrees with the current code with version 2 and with
	  version 3 using 1 iteration.	Using version 3 with 0 iterations
	  should allow one to chop a gauge field without smearing.

2004-07-13 17:49  tag chroma1-5-20

2004-07-13 17:49  edwards

	* NEWS: Info on 1.5.20

2004-07-12 12:44  edwards

	* docs/chromadoc: Removed include from search path

2004-07-12 12:44  edwards

	* docs/chromadoc.in: Removed "include" from search path.

2004-07-09 05:50  bjoo

	* aclocal.m4, configure, docs/chromadoc, lib/Makefile,
	  lib/Makefile.am, lib/actions/ferm/invert/inv_borici.cc,
	  lib/actions/ferm/invert/inv_borici.h,
	  lib/actions/ferm/invert/inv_borici_w.cc,
	  lib/actions/ferm/invert/inv_borici_w.h,
	  mainprogs/tests/t_invborici.cc,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure: Moved
	  inv_borici.xxx to inv_borici_w.xxx to allow staggered builds to
	  work

2004-07-07 23:19  edwards

	* lib/actions/ferm/fermacts/overlap_fermact_base_w.cc: Fixed
	  diagnostic "for" loops using "shift" to be initialized.

2004-07-07 23:08  edwards

	* lib/actions/ferm/fermacts/: zolotarev4d_fermact_w.cc,
	  zolotarev4d_fermact_w.h, zolotarev5d_fermact_array_w.cc,
	  zolotarev5d_fermact_array_w.h: Added the default/parent
	  createState to return (covariantly) the OverlapState .

2004-07-07 23:06  edwards

	* lib/fermact.h: Added missing "const" in createState in
	  FermionAction<multi1d<T>>

2004-07-07 21:22  edwards

	* lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc: Added
	  missing (useless) return at end to make compiler happy.

2004-07-07 21:18  edwards

	* lib/actions/ferm/linop/lg5eps_double_pass_w.cc: Changed fixed
	  array decl to multi1d<Double>

2004-07-07 21:17  edwards

	* lib/actions/ferm/linop/lovddag_double_pass_w.cc: Fix on my fix.

2004-07-07 21:15  edwards

	* lib/actions/ferm/linop/: lovlap_double_pass_w.cc,
	  lovddag_double_pass_w.cc: Changed fixed array decl to a
	  multi1d<Double>

2004-07-07 16:23  edwards

	* lib/io/: fermact_paramio.cc, overlap_state_info.h,
	  zolotarev4d_fermact_paramio_w.h, zolotarev5d_fermact_paramio_w.h:
	  Cleanups to make intel compiler happy.

2004-07-07 15:58  edwards

	* lib/io/fermact_paramio.h: Changed "const enum" to just enum. The
	  "const" is meaningless.

2004-07-07 12:41  edwards

	* scripts/wallformfac_rhopi.pl: Bug fix. Removed extraneous factor
	  of 2 in normalization.

2004-07-01 17:12  edwards

	* lib/io/kyuqprop_io.cc: Removed incorrect comment.

2004-06-30 15:51  edwards

	* lib/io/kyuqprop_io.cc: Forgot to include proper header.

2004-06-30 15:49  edwards

	* lib/io/kyuqprop_io.cc: Changed from using PauliToDRMat to instead
	  DiracToDRMat.

2004-06-30 15:42  edwards

	* scripts/wallformfac_rhopi.pl: Working analysis script.

2004-06-24 04:02  edwards

	* scripts/wallformfac_rhopi.pl: Yet more fixes...

2004-06-24 04:00  edwards

	* scripts/wallformfac_rhopi.pl: Fixes.

2004-06-24 03:50  edwards

	* scripts/wallformfac_rhopi.pl: Fixed up printing.

2004-06-24 03:42  edwards

	* scripts/wallformfac_rhopi.pl: Fixes.

2004-06-24 03:29  edwards

	* scripts/wallformfac_rhopi.pl: Fixes.

2004-06-24 03:21  edwards

	* scripts/: wallformfac_rhopi.pl: Fixes.

2004-06-24 03:04  edwards

	* scripts/wallformfac_rhopi.pl: First version of rho->pi FF
	  analysis code.

2004-06-24 00:52  edwards

	* scripts/wallformfac_nucl.pl: Added more output stuff for FF's.

2004-06-24 00:51  edwards

	* scripts/wallformfac_pion.pl: Small comment change.

2004-06-17 21:35  edwards

	* scripts/: wallformfac_nucl.pl, wallformfac_pion.pl: More fixes of
	  mag stuff. Added printing of final ff's.

2004-06-17 00:02  edwards

	* scripts/wallformfac_nucl.pl: Fixes to mag. FF stuff.

2004-06-16 17:23  edwards

	* scripts/: wallformfac_nucl.pl, wallformfac_pion.pl: Overhauled to
	  use new file name conventions, and improving looping methods.

2004-06-16 17:22  edwards

	* scripts/config.pl: Small changes.

2004-06-16 10:51  dgr

	* lib/Makefile.am, lib/util/ferm/diractodr.cc,
	  lib/util/ferm/ferm_w.h, lib/util/ferm/tdiractodr.cc,
	  lib/util/ferm/tdiractodr.h,
	  tests/qqq_w/qqq_w_v4.linux-scalar-intel.barcomp,
	  tests/qqq_w/qqq_w_v4.linux-scalar-intel.xml,
	  tests/qqq_w/qqq_w_v4.xml.ini: Changed the Dirac Pauli
	  representation to the "correct" one corresponding to the rotation
	  of the Minkowski space matrices.  The old version differing by -1
	  in spatial matrices, is now "twisted Dirac Pauli".

2004-06-16 10:45  edwards

	* tests/sink_smearing/sink_smearing_v4.linux-scalar-intel.xml:
	  Update to reflect new stuff in propagator headers.

2004-06-12 00:37  edwards

	* tests/qproptrev/qproptrev_v1.xml.ini: Sample input file for
	  qproptrev

2004-06-11 17:09  edwards

	* lib/meas/hadron/walldeltaff_w.cc: Code optimizations to speed it
	  up.

2004-06-11 16:44  edwards

	* lib/util/ferm/gammasgn_w.cc: More small improvements.

2004-06-11 16:42  edwards

	* lib/util/ferm/gammasgn_w.cc: Small sanity check.

2004-06-11 16:40  edwards

	* lib/Makefile.am: Added  gammasgn_w.{h,cc}

2004-06-11 16:40  edwards

	* lib/util/ferm/gammasgn_w.cc: Fixes.

2004-06-11 16:39  edwards

	* lib/util/ferm/ferm_w.h: Added gammasgn_w.h

2004-06-11 16:31  edwards

	* lib/util/ferm/: gammasgn_w.cc, gammasgn_w.h: Gamma mult factors

2004-06-10 22:08  edwards

	* lib/meas/hadron/walldeltaff_w.cc: Bug fix in stopwatch.

2004-06-10 21:56  edwards

	* lib/meas/hadron/walldeltaff_w.cc: Added StopWatch
	  instrumentation.

2004-06-10 06:42  bjoo

	* lib/Makefile.am, lib/actions/ferm/invert/inv_borici.cc,
	  lib/actions/ferm/invert/inv_borici.h,
	  lib/actions/ferm/invert/inv_minres_array.cc,
	  lib/actions/ferm/invert/inv_minres_array.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_invborici.cc,
	  mainprogs/tests/t_ovlap5d_bj.cc: Added borici 2 level inverter
	  and 5D minres inverter

2004-06-09 22:22  edwards

	* scripts/wallformfac_delta.pl: First version of delta->delta+gamma
	  FF (crude) analysis.

2004-06-08 21:07  edwards

	* lib/meas/hadron/baryon_w.cc: Bug fix. Changed S_proj to
	  S_proj_unpol in the delta_{x,y,z}.kappa._{4,5,6} section.

2004-06-08 16:56  tag chroma1-5-19

2004-06-08 16:56  edwards

	* lib/meas/hadron/: wallff_w.cc, wallff_w.h: Added binary writing.

2004-06-08 16:56  edwards

	* NEWS: Info on 1.5.19

2004-06-08 16:54  edwards

	* mainprogs/main/wallformfac.cc: Changed to now write binary
	  output.

2004-06-08 11:20  tag chroma1-5-18

2004-06-08 11:20  edwards

	* NEWS: More info on 1.5.18

2004-06-08 11:19  edwards

	* NEWS: Info on 1.5.18

2004-06-08 11:10  edwards

	* lib/meas/hadron/baryon_w.cc: Bug fixes in the delta_z guys.

2004-06-08 10:19  edwards

	* mainprogs/main/spectrum_w.cc: Changed out_version to 11.

2004-06-07 23:39  edwards

	* lib/meas/hadron/baryon_w.cc: Added gobs of operators for the
	  delta.

2004-06-06 21:33  edwards

	* lib/meas/hadron/wallrhopiff_w.cc: Technically a bug fix. The
	  meaning of the rho->pi or pi->rho FF was reversed from the
	  convention.

2004-06-06 20:52  edwards

	* tests/wallformfac/wallformfac_v1.xml.gz: Removed temp file.

2004-06-06 20:43  edwards

	* lib/meas/hadron/: walldeltaff_w.cc, walldeltapff_w.cc: Removed
	  hacks for testing fixed combo of lorentz indices.

2004-06-05 20:59  edwards

	* tests/wallformfac/test_wallformfac_v2.csh: New version.

2004-06-05 20:58  edwards

	* tests/wallformfac/wallformfac_v1.xml.gz: Test version.

2004-06-05 17:06  edwards

	* mainprogs/main/wallformfac.cc: Changed out_version

2004-06-04 23:00  edwards

	* lib/meas/hadron/: walldeltaff_w.cc, walldeltapff_w.cc,
	  wallnuclff_w.cc, wallpionff_w.cc, wallrhoff_w.cc,
	  wallrhopiff_w.cc: Bug fix. Mistakenly redeclared lattice tmps.
	  These shadowed the former decls and produced zero outside.

2004-06-04 17:15  edwards

	* mainprogs/main/wallformfac.cc: Now read back a struct from all
	  the wallff routines.

2004-06-04 17:14  edwards

	* mainprogs/main/Makefile.am: Put back in wallformfac

2004-06-04 17:14  edwards

	* lib/Makefile.am: Put back in all wallff routines.

2004-06-04 17:13  edwards

	* lib/meas/hadron/: walldeltaff_w.cc, walldeltaff_w.h,
	  walldeltapff_w.cc, walldeltapff_w.h, wallff_w.cc, wallff_w.h,
	  wallnuclff_w.cc, wallnuclff_w.h, wallpionff_w.cc, wallpionff_w.h,
	  wallrhoff_w.cc, wallrhoff_w.h, wallrhopiff_w.cc, wallrhopiff_w.h:
	  Changed so now all routines populate a structure. The wallformfac
	  struct now accomodates all source/sink spin structure.

2004-06-04 17:12  edwards

	* lib/meas/hadron/hadron_w.h: Added wallrhoff_w.h and
	  wallrhopiff_w.h

2004-06-04 00:07  edwards

	* mainprogs/main/Makefile.am: Temporarily commented out wallformfac

2004-06-04 00:05  edwards

	* lib/meas/hadron/: wallff_w.cc, wallff_w.h: Add wallFormFacSft
	  routine. Writers are temporarily broken.

2004-06-04 00:04  edwards

	* lib/Makefile.am: Commented out wallXXXff routines temporarily.
	  They are under heavy modification.

2004-06-04 00:02  edwards

	* lib/meas/hadron/: wallrhopiff_w.cc, wallrhopiff_w.h: First
	  version of rho->gamma+pi FF.

2004-06-04 00:02  edwards

	* lib/meas/hadron/: wallrhoff_w.cc, wallrhoff_w.h: First version of
	  rho->gamma+rho FF. Does compile.

2004-06-04 00:01  edwards

	* lib/meas/hadron/: barhqlq_w.h, wallnuclff_w.h: Removed dos-isms.

2004-06-03 17:43  edwards

	* tests/gtransf.lime1: Gauge transf. matrices to coul gauge.

2004-06-03 17:43  edwards

	* mainprogs/main/Makefile.am: Added qproptrev.cc

2004-06-03 17:42  edwards

	* mainprogs/main/qproptrev.cc: Applies CT.

2004-06-03 16:45  edwards

	* mainprogs/main/qpropgfix.cc: Removed duplicate declaration.

2004-06-03 14:49  edwards

	* tests/qpropgfix/: qpropgfix_v1.linux-scalar-intel.xml,
	  qpropgfix_v1.xml.ini: Test case.

2004-06-03 14:34  edwards

	* mainprogs/main/Makefile.am: Added qpropgfix

2004-06-03 14:34  edwards

	* mainprogs/main/qpropgfix.cc: Propagator gauge fixing code.

2004-06-03 14:24  edwards

	* tests/cfgtransf/gfix.ini: Added new required option (for scidac
	  output) of gauge transf matrices.

2004-06-03 07:49  bjoo

	* lib/actions/ferm/invert/inv_rel_cg1.cc: Removed the reduction in
	  the inner CG by MaxCG -- this failed miserably

2004-06-02 16:49  edwards

	* tests/wallformfac/: spectrum_pt_v10.linux-scalar-intel.xml,
	  spectrum_wl_v10.linux-scalar-intel.xml,
	  wallformfac_v1.linux-scalar-intel.xml: Updated.

2004-06-01 23:50  edwards

	* lib/meas/hadron/walldeltaff_w.cc: Made the overlap delta-j-delta
	  contract flip sign.

2004-06-01 23:48  edwards

	* mainprogs/main/wallformfac.cc: Added delta FF.

2004-06-01 23:39  edwards

	* lib/meas/hadron/walldeltaff_w.h: Fixed C-preproc. include guard
	  name collision.

2004-06-01 23:34  edwards

	* lib/meas/hadron/: walldeltaff_w.cc, walldeltapff_w.cc: Changes
	  and fixes.

2004-06-01 23:33  edwards

	* lib/Makefile.am: Added walldeltaff_w.{h,cc}

2004-06-01 22:06  edwards

	* lib/meas/hadron/walldeltapff_w.cc: Switched to using wallff_w.h .

2004-06-01 22:00  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Moved nonlocalCurrentProp to
	  wallff_w.cc . Removed additional 1/2 norm and put it into the
	  nonlocalprop.

2004-06-01 22:00  edwards

	* lib/meas/hadron/: wallff_w.cc, wallff_w.h: Structures for wall-FF
	  codes. Also readers and other useful prototypes.

2004-06-01 21:59  edwards

	* lib/meas/hadron/walldeltapff_w.cc: Removed 1/2 normalization. Its
	  been shoved back into the nonlocalcurrentprop construction.

2004-06-01 21:58  edwards

	* lib/meas/hadron/: walldeltaff_w.cc, walldeltaff_w.h: First (not
	  complete) attempt at a delta^+->gamma+delta^+ FF.

2004-06-01 21:57  edwards

	* lib/meas/hadron/hadron_w.h: Added wallff_w.h and walldeltaff_w.h

2004-06-01 21:30  edwards

	* tests/wallformfac/test_wallformfac_zolo4d_v1.csh: Reset to use my
	  path...

2004-06-01 01:00  edwards

	* lib/meas/hadron/walldeltapff_w.cc: Changed names of
	  local/nonlocal currents printed into XML.

2004-06-01 00:33  edwards

	* lib/meas/hadron/walldeltapff_w.cc: Bug fix. Forgot to initialize
	  the counter in some FOR statements!

2004-06-01 00:28  edwards

	* mainprogs/main/wallformfac.cc: Bug fix. Changed xml_out to
	  xml_seq_src in sub calls.

2004-06-01 00:12  edwards

	* lib/meas/hadron/walldeltapff_w.cc: Small fix.

2004-06-01 00:00  edwards

	* lib/meas/hadron/: walldeltapff_w.cc, wallnuclff_w.cc: Made
	  nonlocalCurrentProp to be static.

2004-05-31 23:58  edwards

	* lib/meas/hadron/hadron_w.h: Added walldeltapff_w.h

2004-05-31 23:57  edwards

	* mainprogs/main/wallformfac.cc: Added delta<->p transition FF's.

2004-05-31 23:55  edwards

	* lib/Makefile.am: Added walldeltapff_w.{h,cc}

2004-05-31 22:49  edwards

	* lib/meas/hadron/walldeltapff_w.cc: Second version of delta->p and
	  now also  p->delta  transition FF.

2004-05-31 15:32  bjoo

	* lib/actions/ferm/: fermacts/zolotarev4d_fermact_w.cc,
	  invert/inv_rel_cg1.cc, invert/invcg1.cc, linop/lovddag_w.cc,
	  linop/lovlapms_w.cc: Relaxation Factor normalised by MaxCG in inv
	  Rel CG1

2004-05-31 01:12  edwards

	* lib/meas/hadron/: walldeltapff_w.cc, walldeltapff_w.h: First
	  version of delta->gamma+p formfactor.

2004-05-28 22:10  tag chroma1-5-17

2004-05-28 22:10  edwards

	* NEWS: Info on 1.5.17

2004-05-28 22:07  edwards

	* mainprogs/main/cfgtransf.cc: Also save gauge transf matrices when
	  gfixing and scidac output.

2004-05-28 21:49  edwards

	* lib/meas/gfix/: coulgauge.cc, coulgauge.h, grelax.cc, grelax.h:
	  Changed gauge fixing strategy. Now only change the "g" - site
	  gauge transformation matrix. Optionally return them.

2004-05-28 12:47  bjoo

	* lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h,
	  mainprogs/main/propagator.cc, mainprogs/main/propagator_comp.cc,
	  tests/wallformfac/test_wallformfac_zolo4d_v1.csh: Wired in
	  REL_GMRESR_SUMR and REL_GMRESR_CG inverters to propagator and
	  propagator_comp

2004-05-27 20:56  edwards

	* mainprogs/main/cfgtransf.cc: Added Kentucky gauge writer.

2004-05-27 20:53  edwards

	* lib/io/: kyugauge_io.cc, kyugauge_io.h: Added KY gauge writer.

2004-05-27 20:14  dru

	* mainprogs/main/ExampleBuildingBlocks.cc: T1 and T2 must be signed
	  short int.

2004-05-27 20:13  dru

	* lib/meas/hadron/: BuildingBlocks_w.cc, BuildingBlocks_w.h:
	  Forget, the T1 and T2 entries must be signed short int otherwise
	  the headers get screwed up.

2004-05-27 17:29  dru

	* mainprogs/main/ExampleBuildingBlocks.cc: Made cosmetic changes.

2004-05-27 17:21  dru

	* lib/meas/hadron/BuildingBlocks_w.cc: Made cosmetic changes.

2004-05-27 17:16  dru

	* lib/meas/hadron/: BuildingBlocks_w.cc, BuildingBlocks_w.h: Added
	  T1 and T2 arguments and made cosmetic changes.

2004-05-27 16:20  dru

	* mainprogs/main/ExampleBuildingBlocks.cc: Added arguments to deal
	  with T1 and T2 as mentioned in the last log entry of
	  BuildingBlocks_w.cc.

2004-05-27 16:17  dru

	* lib/meas/hadron/BuildingBlocks_w.cc: Added arguments, T1 and T2,
	  to the necessary functions to deal with the problem refered in
	  the previous log.

2004-05-27 14:00  dru

	* mainprogs/main/ExampleBuildingBlocks.cc: I added the ability to
	  read chroma propagators and added a minimal set of checks, really
	  print outs, regarding the gauge fields and propagators.  This
	  version is running again, but needs to be carefully checked.

2004-05-27 12:26  dru

	* lib/meas/hadron/BuildingBlocks_w.cc: I have made a few cosmetic
	  changes, removed some old commented out code, and added a bit
	  more bebug info.

2004-05-27 12:00  dru

	* lib/meas/hadron/BuildingBlocks_w.cc: Someone had changed the
	  meaing of T.	I fixed this and introduced T1 and T2 to denote the
	  endpoints of the range of time for which the building blocks are
	  evaluated.  I also added some debug capabilities.

2004-05-27 11:50  tag chroma1-5-16

2004-05-27 11:50  edwards

	* NEWS: Info on 1.5.16

2004-05-27 07:37  bjoo

	* lib/actions/ferm/invert/: inv_gmresr_cg_array.cc,
	  inv_gmresr_cg_array.h: 5D Flexible GMRESR with CG solve for
	  precondition. This doesnt work so well so dont use

2004-05-27 07:21  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  mainprogs/tests/t_ovlap5d_bj.cc,
	  tests/wallformfac/test_wallformfac_zolo4d_v1.csh: Fixed some bugs
	  -- that I put in. Mia Culpa and sorry all

2004-05-26 20:47  edwards

	* lib/io/gauge_io.cc: Changed gauge IO to ALWAYS read single
	  precision and write single precision through a temporary set by a
	  cast.

2004-05-26 16:30  edwards

	* tests/wallformfac/test_wallformfac_zolo4d_v1.csh: Temp script for
	  tests with zolo4d.

2004-05-25 21:47  tag chroma1-5-15

2004-05-25 21:47  edwards

	* NEWS: Fixed info on 1.5.15

2004-05-25 21:47  edwards

	* NEWS: Info on 1.5.13

2004-05-25 17:47  tag chroma1-5-13

2004-05-25 17:47  bjoo

	* lib/Makefile.am, lib/invtype.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_cg.h,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_gmresr_sumr.h,
	  lib/actions/ferm/invert/inv_rel_sumr.cc,
	  lib/actions/ferm/invert/invsumr.cc, lib/io/param_io.cc,
	  lib/io/param_io.h, lib/io/zolotarev4d_fermact_paramio_w.cc,
	  lib/io/zolotarev4d_fermact_paramio_w.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_msumr.cc,
	  mainprogs/tests/t_rel_gmresr.cc,
	  tests/t_gmresr/t_rel_gmresr.xml.ini: Added Preconditioned
	  inverters a la Wuppertal

2004-05-25 17:16  edwards

	* lib/io/kyuqprop_io.cc: For debugging, print out some more
	  correlator info.

2004-05-25 12:19  edwards

	* lib/io/kyuqprop_io.cc: Changed to use Pauli-Schwinger.

2004-05-25 12:17  edwards

	* lib/util/ferm/diractodr.cc: Changed includes.

2004-05-25 12:17  edwards

	* lib/util/ferm/: paulitodr.cc, paulitodr.h: Pauli-Schwinger to
	  Degrand-Rossi.

2004-05-25 12:16  edwards

	* lib/util/ferm/ferm_w.h: Added paulitodr.h

2004-05-25 12:13  edwards

	* lib/Makefile.am: Added paulitodr.{h,cc}

2004-05-24 21:22  edwards

	* lib/io/kyugauge_io.cc: Changed internal read from LatticeReal64
	  to LatticeRealD - the SciDAC standard.

2004-05-24 18:34  edwards

	* mainprogs/tests/t_mesplq.cc: Changed back to 4^3x8

2004-05-24 15:46  mcneile

	* mainprogs/tests/Makefile.am: Check in for Alan Irving.  This is
	  an example code for the potential measurement routines converted
	  from SZIN.

2004-05-24 15:41  mcneile

	* mainprogs/tests/t_wilslp.cc: This is a check in for Alan irvin.
	  This is an example code to test the potential measurement
	  routines converted from SZIN.

2004-05-23 17:44  edwards

	* lib/io/kyuqprop_io.cc: Changed all reading and ops to explicitly
	  double precision.

2004-05-23 17:44  edwards

	* lib/util/ferm/: transf.cc, transf.h: Changed floating to now
	  support both an explicitly single and double precision variants.

2004-05-23 17:43  edwards

	* lib/util/ferm/: diractodr.cc, diractodr.h: Made explicitly double
	  precision.

2004-05-21 11:31  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/invert/minv_rel_cg.cc,
	  lib/actions/ferm/invert/minv_rel_cg.h,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/linop/lmdagm.h, mainprogs/tests/t_msumr.cc:
	  Added Multi Mass Relaxed CG

2004-05-21 10:32  bjoo

	* lib/actions/ferm/invert/: minv_rel_sumr.cc, minv_rel_sumr.h:
	  Relaxed version of Multi Mass SUMR

2004-05-21 08:03  bjoo

	* lib/Makefile.am, lib/invtype.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/invert/inv_rel_sumr.cc,
	  lib/actions/ferm/invert/inv_rel_sumr.h,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.cc,
	  lib/actions/ferm/linop/lg5eps_double_pass_w.h,
	  lib/actions/ferm/linop/lg5eps_w.cc,
	  lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  lib/io/param_io.cc, mainprogs/tests/t_ovlap5d_bj.cc,
	  mainprogs/tests/t_sumr.cc: Added relaxed SUMR solver (single
	  mass). Added double pass version of g5eps.

2004-05-19 11:05  tag chroma1-5-14

2004-05-19 11:05  edwards

	* NEWS: Info on 1.5.14

2004-05-19 11:03  edwards

	* scripts/wallformfac_nucl.pl: Added time reversal for h2

2004-05-19 07:43  bjoo

	* lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/linop/zolotarev5d_nonhermop_array_w.cc,
	  mainprogs/main/propagator_comp.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_bicgstab.cc, mainprogs/tests/t_ovlap5d_bj.cc,
	  mainprogs/tests/t_ritz_KS.cc: BiCGStab now works for 4D and 5D
	  but seems not to converge for DWF or ZOLOTAREV5D

2004-05-18 23:31  edwards

	* lib/io/kyuqprop_io.cc: Apparently, the KYU guys need to rotate
	  the overlap prop **source** index to a chiral basis so as to use
	  the overlap source chirality trick.  It must be undone in the
	  *analysis* code, so that means it has to be done here.

2004-05-18 20:21  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/actions/ferm/invert/invbicgstab.cc,
	  lib/actions/ferm/invert/invbicgstab.h,
	  lib/actions/ferm/invert/invbicgstab_array.cc,
	  lib/actions/ferm/invert/invbicgstab_array.h,
	  lib/actions/ferm/invert/invcg1_array.cc,
	  lib/actions/ferm/invert/invcg1_array.h,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/invert/invert.h,
	  lib/actions/ferm/linop/zolotarev5d_nonhermop_array_w.cc,
	  mainprogs/tests/t_ovlap5d_bj.cc: Added invcg1_array. Added hooks
	  for bicgstab and bicgstab_array

2004-05-18 08:54  bjoo

	* lib/actions/ferm/: invert/inv_rel_cg1.cc, invert/inv_rel_cg2.cc,
	  linop/lovddag_w.cc, linop/lovlapms_w.cc: Gone back to Relative
	  Error in lovlapms and lovddag

2004-05-18 08:40  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.h,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/zolotarev5d_nonhermop_array_w.cc,
	  lib/actions/ferm/linop/zolotarev5d_nonhermop_array_w.h,
	  mainprogs/tests/t_invrelcg.cc: Added fixed up relaxed solvers

2004-05-17 11:36  mcneile

	* lib/Makefile.am: I have added the fuzzed Wilson line code back
	  into the auto makefile. The library and test code compiled on a
	  linux box.

2004-05-17 10:11  mcneile

	* lib/meas/glue/wilslp.cc: Check in for Alan Irving.  Craig,	 I
	  have finished testing (to MY satisfaction) the Wilson loop code
	  wilslp.cc translated from the SZIN wilslp.m The timelike planar
	  and off-axis (sqrt(2), sqrt(5) and srqt(3)) loops all agree with
	  the MILC numbers to reasonable accuracy.  The spaceleike numbers
	  look sensible (and the spacelikeplaquette agrees)

	  As before, the relevant files can be seen in back_aci_chroma	 in
	  /raidd/aci/chromaqdp

2004-05-14 14:10  bjoo

	* lib/Makefile.am, lib/invtype.h, lib/linearop.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.cc,
	  lib/actions/ferm/invert/inv_rel_cg1.h,
	  lib/actions/ferm/invert/inv_rel_cg2.cc,
	  lib/actions/ferm/invert/inv_rel_cg2.h,
	  lib/actions/ferm/linop/lmdagm.h, lib/actions/ferm/linop/lopscl.h,
	  lib/io/param_io.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_invrelcg.cc: Relaxed CG now compile, give the
	  right answer but are not working the way I expect them to work. I
	  need to fiddle with setting the criterion for the inner solver

2004-05-14 11:13  bjoo

	* lib/actions/ferm/invert/: inv_rel_cg1.cc, inv_rel_cg1.h,
	  inv_rel_cg2.cc, inv_rel_cg2.h: These are hooks for the relaxed cg
	  inverters.  Right now they are copies of the non-relaxed ones.
	  THey are not yet in the makefile

2004-05-14 11:08  bjoo

	* lib/linearop.h, lib/actions/ferm/linop/lg5eps_w.cc,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovddag_double_pass_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  mainprogs/tests/t_ovlap5d_bj.cc: Added ApproxLinearOperator class
	  and made lovlapms lovddag lovlap_double_pass lovddag_double_pass
	  and g5eps to be of this class. This is for work with relaxed
	  solvers

2004-05-13 20:43  edwards

	* NEWS: Info on 1.5.13

2004-05-13 20:41  edwards

	* tests/qqq_w/: qqq_w_v3.linux-scalar-intel.barcomp,
	  qqq_w_v3.linux-scalar-intel.xml, qqq_w_v3.xml.ini: Changed to
	  agree with latest code. Note, before this change - the input
	  version was to, but the versioning here said 3. Now, the input
	  version really is 3, so just changed canonical test code
	  accordingly.	NOTE: the Dirac_basis flag is now true.

2004-05-13 20:36  edwards

	* mainprogs/main/qqq_w.cc: Changed out_version.

2004-05-13 20:31  edwards

	* mainprogs/main/qqq_w.cc: Small compilation fixes.

2004-05-13 20:27  edwards

	* lib/io/kyuqprop_io.cc: Added missing include.

2004-05-13 20:26  edwards

	* lib/io/qprop_io.cc: Compilation fix.

2004-05-13 20:24  edwards

	* mainprogs/main/qqq_w.cc: Changed output header format. Now use a
	  QQQBarcomp struct throughout.  Now support spin basis rotation.

2004-05-13 20:23  edwards

	* lib/util/ferm/: diractodr.cc, diractodr.h: Dirac to Degrand-Rossi
	  spin basis rotation matrix.

2004-05-13 20:23  edwards

	* lib/util/ferm/transf.h: Added C++ emacs control. Removed
	  dos-isms.

2004-05-13 20:22  edwards

	* lib/util/ferm/: ferm.h, ferm_s.h, ferm_w.h: Added
	  Wilson/Staggered build control. Added diractodr.h to ferm_w.h

2004-05-13 20:21  edwards

	* lib/io/: kyuqprop_io.cc, kyuqprop_io.h: Split off
	  initDiractoDRMat to its own file - diractodr.cc

2004-05-13 20:21  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Added QQQBarcomp header and
	  reader/writers.

2004-05-13 20:20  edwards

	* lib/Makefile.am: Added diractodr.{h,cc}. Rearranged some includes
	  to WIlson

2004-05-13 20:17  edwards

	* mainprogs/main/Makefile.am: Added Wilson/Staggered build
	  controls.

2004-05-13 20:05  tag chroma1-5-12

2004-05-13 20:05  edwards

	* NEWS: Info on 1.5.12

2004-05-13 11:36  bjoo

	* lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/invert/minvcg.cc,
	  lib/actions/ferm/invert/minvsumr.cc,
	  lib/actions/ferm/invert/minvsumr.h, mainprogs/tests/t_msumr.cc,
	  mainprogs/tests/t_sumr.cc, tests/t_msumr/t_msumr.xml.ini,
	  tests/t_msumr/t_msumr.xml.linux-scalar-intel: Multi SUMR works,
	  and hooked into propagator

2004-05-13 09:34  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/invert/invert.h,
	  lib/actions/ferm/invert/minvsumr.cc,
	  lib/actions/ferm/invert/minvsumr.h, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_msumr.cc, mainprogs/tests/t_sumr.cc: Multi Mass
	  SUMR-tastic

2004-05-12 23:52  edwards

	* lib/util/gauge/gauge_startup.cc: Changed DISORDERED case to call
	  HotSt.

2004-05-12 20:46  tag chroma1-5-11

2004-05-12 20:46  edwards

	* tests/qproptransf/qtransf_seqprop_v2.linux-scalar-intel.xml:
	  Regression test code.

2004-05-12 20:46  edwards

	* scripts/wallformfac_nucl.pl: Added case of h1/2 for checks (for
	  now).

2004-05-12 20:45  edwards

	* NEWS: Info on 1.5.11

2004-05-12 20:44  edwards

	* mainprogs/main/qproptransf.cc: Abstracted out the writing of the
	  SciDAC seqprop case to use a reader/writer.

2004-05-12 20:35  edwards

	* mainprogs/main/seqsource.cc: Simplified to use a reader/writer
	  for all the SequentialSource stuff.

2004-05-12 20:31  edwards

	* tests/seqsource/seqsource_v1.linux-scalar-intel.xml: Oops.
	  Somehow the canonical version got the wrong input boundary
	  conditions.  Fixed to be a correct test case using
	  make_source/propagator.

2004-05-12 20:17  edwards

	* mainprogs/main/wallformfac.cc: Added, temporarily, a "2" case for
	  time reversed p->gamma+p

2004-05-12 11:50  bjoo

	* tests/t_sumr/t_sumr.xml.ini: T_SUMR test file

2004-05-12 11:46  bjoo

	* mainprogs/tests/t_sumr.cc: Test program for the correctness of
	  SUMR

2004-05-12 11:45  bjoo

	* lib/invtype.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/invert/invsumr.cc,
	  lib/actions/ferm/qprop/overlap_fermact_qprop_w.cc,
	  lib/io/param_io.cc, mainprogs/tests/Makefile.am: SUMR solver now
	  solves

2004-05-12 10:16  edwards

	* scripts/wallformfac_nucl.pl: Changed plot to show entire range

2004-05-11 21:14  edwards

	* lib/io/qprop_io.cc: Added SequentialSource reader/writer.

2004-05-11 21:13  edwards

	* lib/io/qprop_io.h: Added SequentialSource struct.

2004-05-11 09:29  bjoo

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/linop/lg5eps_w.cc,
	  lib/actions/ferm/linop/lg5eps_w.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  mainprogs/main/propagator_comp.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_g5eps_bj.cc, mainprogs/tests/t_ovlap_bj.cc,
	  tests/t_g5eps_bj/t_g5eps_bj.xml.ini: Tested lg5eps_w.cc

2004-05-10 18:02  bjoo

	* lib/: Makefile.am, actions/ferm/linop/lg5eps_w.cc,
	  actions/ferm/linop/lg5eps_w.h: Preliminary and untested
	  implementation of gamma_5 eps(H) ie just the sign function.
	  Implemented as a sum over poles. For use in SUMR solver

2004-05-10 12:41  bjoo

	* lib/: Makefile.am, actions/ferm/invert/invsumr.cc,
	  actions/ferm/invert/invsumr.h: Added initial and UNTESTED
	  invsumr.cc and invsumr.h

2004-05-09 20:22  edwards

	* mainprogs/main/wallformfac.cc: Temporary hack. Added the complex
	  conjugate of the props as nucl_type=2 so as to add to nucl_type
	  =1. Later, fold this in properly.

2004-05-07 12:30  edwards

	* scripts/wallformfac_pion.pl: Print entire list of .ax file.

2004-05-07 12:06  edwards

	* mainprogs/main/make_source.cc: Added diag line.

2004-05-07 12:05  edwards

	* mainprogs/main/qproptransf.cc: Changed diag line again.

2004-05-07 12:04  edwards

	* mainprogs/main/qproptransf.cc: Changed diag line.

2004-05-07 12:04  edwards

	* mainprogs/main/qproptransf.cc: Added diagnostic output line.

2004-05-06 23:49  edwards

	* scripts/wallformfac_pion.pl: Small fix.

2004-05-06 12:48  bjoo

	* lib/: actions/ferm/fermacts/fermacts.h,
	  actions/ferm/linop/linop.h, actions/ferm/qprop/qprop.h, io/io.h,
	  meas/eig/eig.h, meas/hadron/hadron.h, meas/sources/sources.h,
	  util/gauge/gauge.h: Fixed the .h files that had bad elif causes
	  in staggered build. Staggered code now builds.

2004-05-05 17:32  edwards

	* tests/bar3ptfn/test_bar3ptfn_v6.csh: Modified slightly.

2004-05-05 17:31  edwards

	* tests/bar3ptfn/test_bar3ptfn_v6.csh: Modified.

2004-05-05 17:21  edwards

	* tests/bar3ptfn/test_bar3ptfn_v6.csh: Test script.

2004-05-04 17:28  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Changed and simplified to use
	  the local  baryonContract  template.

2004-05-04 17:28  edwards

	* tests/wallformfac/wallformfac_v1.linux-scalar-intel.xml: Changed
	  to reflect new and hopefully final form of wallnuclff code.
	  Rearranged to use the local baryonContract.

2004-05-04 17:07  edwards

	* tests/wallformfac/wallformfac_v1.linux-scalar-intel.xml: Agrees
	  with new form of wallnuclff_w.cc. Changed to canonical version.

2004-05-04 17:06  edwards

	* tests/wallformfac/: spectrum_pt_v10.xml, spectrum_wl_v10.xml:
	  Renamed.

2004-05-04 17:06  edwards

	* tests/wallformfac/: spectrum_pt_v10.linux-scalar-intel.xml,
	  spectrum_wl_v10.linux-scalar-intel.xml: Missed these before.
	  These are the test output.

2004-05-04 15:54  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Rearranged terms to new form.

2004-05-04 15:30  tag chroma1-5-10

2004-05-04 15:30  edwards

	* NEWS: Info on 1.5.10

2004-05-04 08:10  bjoo

	* tests/multi_propagator_comp/:
	  multi_propagator_comp_zolo4_c0.xml.ini,
	  multi_propagator_comp_zolo4_c1.xml.ini,
	  multi_propagator_comp_zolo4_c2.xml.ini: Double pass works in
	  multi_propagator_comp on small test_lattice

2004-05-04 07:43  bjoo

	* lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  mainprogs/tests/t_ovlap_double_pass.cc: Stabilised
	  ovlap_double_pass and ovddag_double_pass

2004-05-03 20:17  edwards

	* tests/wallpionff/: make_source_sh.ini, make_source_wl.ini,
	  prop_sh.ini, prop_wl.ini, scalar.csh, spectrum_sh.ini,
	  spectrum_wl.ini, wallformfac_v1.linux-scalar-intel.xml,
	  wallformfac_v1.xml.ini: Now use wallformfac directory.

2004-05-03 20:10  tag chroma1-5-9

2004-05-03 20:10  edwards

	* tests/wallformfac/: make_source_pt_v5.linux-scalar-intel.xml,
	  make_source_wl_v5.linux-scalar-intel.xml,
	  prop_pt_v6.linux-scalar-intel.xml,
	  prop_wl_v6.linux-scalar-intel.xml, spectrum_pt_v10.xml,
	  spectrum_wl_v10.xml, test_wallformfac_v1.csh,
	  wallformfac_v1.linux-scalar-intel.xml: Made script save canonical
	  versions of results.

2004-05-03 16:28  edwards

	* lib/io/kyuqprop_io.h: Added missing doxygen comment.

2004-05-03 16:25  edwards

	* lib/: meas/hadron/formfac_w.cc, io/param_io.h: Added missing
	  doxygen "!" comment delimiter.

2004-05-03 16:24  edwards

	* lib/io/qprop_io.h: Cosmetic - added an "!" to make bleeping
	  doxygen find its comments...

2004-05-03 16:06  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Full Forwardprop and
	  SequentialProp readers and structs.

2004-05-03 16:04  edwards

	* tests/wallformfac/test_wallformfac_v1.csh: Complete Wall
	  form-factor test script

2004-05-03 16:01  edwards

	* NEWS: Info on 1.5.9

2004-05-03 16:00  edwards

	* mainprogs/main/qproptransf.cc: Changed seqprop format to new
	  format.

2004-05-03 15:59  edwards

	* tests/qproptransf/qtransf_seqprop_v2.xml.ini: Version 2 input
	  file.

2004-05-03 14:03  bjoo

	* lib/actions/ferm/linop/lovddag_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlap_double_pass_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_ovlap_double_pass.cc: Lovlapm_double pass
	  possibly OK. Lovddag_double_pass definitely not yet

2004-05-03 07:21  bjoo

	* lib/: Makefile.am,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  actions/ferm/linop/linop_w.h,
	  actions/ferm/linop/lovddag_double_pass_w.cc,
	  actions/ferm/linop/lovddag_double_pass_w.h,
	  actions/ferm/linop/lovlap_double_pass_w.cc,
	  actions/ferm/linop/lovlap_double_pass_w.h,
	  io/zolotarev4d_fermact_paramio_w.cc,
	  io/zolotarev4d_fermact_paramio_w.h: Added hooks for double pass
	  versions of lovlapms and lovddag. These functions are just copies
	  of the old lovlapms and lovddag for now, but not for long

2004-05-01 16:16  edwards

	* lib/Makefile.am: Added barhqhq_w.{h,cc}.

2004-05-01 16:16  edwards

	* lib/meas/hadron/: baryon_w.cc, baryon_w.h: Removed use of t0 in
	  second call to baryon - it was not used.

2004-05-01 16:15  edwards

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h: Cleaned up - now
	  compiles.

2004-05-01 15:58  edwards

	* lib/meas/hadron/: barhqlq_w.cc, barhqlq_w.h: First versions (not
	  tested) of heavy-light routines. The lambda's look suspicious.

2004-05-01 15:58  edwards

	* lib/meas/hadron/baryon_w.h: Added doxygen header.

2004-04-29 17:29  tag chroma1-5-8

2004-04-29 17:29  edwards

	* NEWS: Info on 1.5.8

2004-04-29 17:07  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Decided to remove multiple "-"
	  signs and a big minus at the end with just simple "+". Just an
	  equiv. change.

2004-04-29 17:02  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Bug fixes! Appears to work!
	  Check all 4 contributions against bar3ptfn using a wall sink.

2004-04-29 13:33  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Completely rearranged how terms
	  are calculated. The f2,3 still don't agree with bar3ptfn.

2004-04-29 13:33  edwards

	* lib/meas/hadron/wallpionff_w.cc: Added a factor of -1 to account
	  for wrong sign.

2004-04-29 13:27  tag chroma1-5-7

2004-04-29 13:27  edwards

	* NEWS: Info on 1.5.7.

2004-04-29 12:12  bjoo

	* mainprogs/: main/Makefile.am, tests/Makefile.am: Oops. Forgot to
	  change mainprogs/main/test makefile_ams. Fixed

2004-04-29 11:55  bjoo

	* lib/actions/ferm/invert/minvcg.cc: This version builds and
	  installs fine in scalar and parscalar

2004-04-29 11:08  edwards

	* mainprogs/main/seqsource.cc: Apparently a bug fix. The wall
	  seqsource can't be made through wall_qprop since the source must
	  live on ALL sites to have zero initial momenta.

2004-04-29 09:41  bjoo

	* configure, configure.ac, lib/Makefile.am, lib/chroma_config.h,
	  lib/chroma_config_internal.h.in, lib/chromabase.h, lib/lib.h,
	  mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/include/sse_config.h.in:
	  Installation and chroma-config now work

2004-04-29 08:31  tag intel_sse_dslash1-2-0

2004-04-29 08:31  bjoo

	* other_libs/intel_sse_wilson_dslash/: Makefile.am, configure,
	  configure.ac, include/Makefile.am, include/sse_config.h,
	  include/sse_config_internal.h.in: Added stuff to make this
	  beastie install properly

2004-04-29 07:20  bjoo

	* chroma-config.in, configure.ac: Fixing installation

2004-04-28 20:55  edwards

	* mainprogs/main/spectrum_w.cc: Split tests for source type into a
	  switch statement - allows error detection.

2004-04-28 14:55  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added numSites().

2004-04-28 12:38  bjoo

	* lib/actions/ferm/invert/minvcg.cc: Put back convergence check
	  based on psi

2004-04-28 12:37  bjoo

	* mainprogs/main/: collect_multi_propcomp.cc, multi_propagator.cc,
	  multi_propagator_comp.cc: Adheres to new propagator structure

2004-04-28 10:56  bjoo

	* mainprogs/main/: collect_propcomp.cc, propagator.cc,
	  seqprop_comp.cc: Tested propagator_comp and collect_propcomp

2004-04-28 10:54  bjoo

	* tests/seqsource/: test_prop_seqsource_comp_nr_v1.csh,
	  test_prop_seqsource_comp_v1.csh, test_prop_seqsource_nr_v1.csh:
	  Added test cases to do the computation with componentised
	  propagator, and NR cases

2004-04-28 10:48  edwards

	* lib/util/gauge/gauge_startup.cc: Small changes.

2004-04-28 10:34  edwards

	* mainprogs/main/: bar3ptfn.cc, collect_multi_propcomp.cc,
	  collect_propcomp.cc, hypsmear.cc, qproptransf.cc, qqq_w.cc,
	  sink_smearing.cc, spectrum_w.cc, wallformfac.cc: Moved gauge
	  initialization to calling gaugeStartup().

2004-04-28 10:31  edwards

	* lib/util/gauge/gauge_startup.h: Removed unneeded include file.

2004-04-28 10:31  edwards

	* lib/util/gauge/: gauge_startup.cc, gauge_startup.h: Added MILC
	  reader. Moved include files to .cc from .h file.

2004-04-28 10:28  edwards

	* lib/util/gauge/gauge_startup.cc: Added MILC reader.

2004-04-28 10:04  bjoo

	* mainprogs/main/propagator_comp.cc: Fixed propagator_comp for new
	  propagator structure. Propagator stuff appears to work. Yet to
	  check seqsource

2004-04-27 22:54  edwards

	* mainprogs/main/propagator.cc: Added sanity check on boundary.

2004-04-27 17:38  edwards

	* tests/bar3ptfn/: bar3ptfn_v6.linux-scalar-intel.dat,
	  bar3ptfn_v6.linux-scalar-intel.xml, bar3ptfn_v6.xml.ini: Updated
	  to reflect new propagator formats.

2004-04-27 17:35  edwards

	* tests/spectrum_w/spectrum_wall_v10.linux-scalar-intel.xml.gz:
	  Updated for newer propagator version.  More importantly, updated
	  for new baryon normalizations!!

2004-04-27 17:34  edwards

	* tests/spectrum_w/spectrum_w_v10.linux-scalar-intel.xml.gz:
	  Updated for new propagator versions.

2004-04-27 17:33  edwards

	* tests/: qqq_w/qqq_w_v3.linux-scalar-intel.barcomp,
	  qqq_w/qqq_w_v3.linux-scalar-intel.xml,
	  sink_smearing/sink_smearing_v4.linux-scalar-intel.xml: Updated
	  for newer propagator versions.

2004-04-27 17:33  edwards

	* tests/seqsource/: prop_seqsource_v1.xml.ini,
	  prop_seqsource_v6.linux-scalar-intel.xml,
	  prop_seqsource_v6.xml.ini, seqsource_v1.linux-scalar-intel.xml,
	  seqsource_v1.xml.ini, test_prop_seqsource_v1.csh: New input
	  versions. Also a test script.

2004-04-27 17:32  edwards

	* tests/propagator/: propagator_v6.linux-scalar-intel.xml,
	  propagator_v6.xml.ini: New test versions for input version = 6.

2004-04-27 17:30  edwards

	* mainprogs/main/seqsource.cc: Changed info/headers around
	  diagnostics. Commented out boundary - not needed.

2004-04-27 17:30  edwards

	* mainprogs/main/propagator.cc: Now supports input from seqsource
	  as well as make_source.

2004-04-27 17:29  edwards

	* mainprogs/main/: dwf_seqprop.cc, seqprop.cc, seqprop_collect.cc,
	  seqprop_comp.cc: Deprecated - will be removed. Changes to support
	  enums for seqsources.

2004-04-27 17:28  edwards

	* mainprogs/main/bar3ptfn.cc: Changed to support new seqprop input
	  files.

2004-04-27 17:26  edwards

	* configure: Induced changes.

2004-04-27 17:26  edwards

	* configure.ac: Changed to version 1.6.

2004-04-27 17:25  edwards

	* mainprogs/main/Makefile.am: Deprecated/removed all the seqprop
	  main programs.

2004-04-27 17:23  tag chroma1-5-6

2004-04-27 17:23  edwards

	* NEWS: Info on 1.5.6.

2004-04-27 17:22  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: New version of chromaprops. Now
	  also have a seqsource.

2004-04-27 16:32  edwards

	* lib/meas/glue/wilslp.h: Ooops. Didn't write the file.

2004-04-27 16:31  edwards

	* lib/Makefile.am: Fixed locations of fuzwilp.cc and wilslp.cc

2004-04-27 16:29  edwards

	* lib/meas/glue/wilslp.cc: Some fixes. Still does not compile.

2004-04-27 16:29  edwards

	* lib/meas/glue/: fuzwilp.cc, fuzwilp.h, wilslp.h: Doxygen updates.

2004-04-27 05:34  bjoo

	* lib/actions/ferm/: invert/minvcg.cc, linop/lovddag_w.cc,
	  linop/lovlapms_w.cc: Fixed a bug in multi-mass solvers

2004-04-26 22:41  flemingg

	* scripts/strip_bar3ptfn.pl: changed perl path to linux default

2004-04-26 12:24  mcneile

	* mainprogs/tests/t_fuzwilp.out.test: This is test output provided
	  by Alan Irving for the fuzzed Wilson loop code. This used the
	  standard nersc 4^4 config.  Alan has done more meaningful tests
	  with a MILC 16^3x32 config.

2004-04-26 12:18  mcneile

	* lib/Makefile.am: I have added the fuzzed wilson loop code to this
	  automakefile.  This is a check in for Alan Irving.

2004-04-26 12:13  mcneile

	* lib/meas/glue/glue.h: Added prototypes for the fuzzred wilson
	  loop code.

2004-04-26 12:12  mcneile

	* lib/meas/glue/: fuzwilp.cc, fuzwilp.h, wilslp.cc, wilslp.h: This
	  is code to measure the potential using fuzzed wilson loops. This
	  is code that was recoded from SZIN.  Alan has checked the code
	  against the MILC code and UKQCD fortran code.  This is a check in
	  for Alan Irving.

2004-04-26 12:08  mcneile

	* mainprogs/tests/Makefile.am: I have added the test code for the
	  fuzed wilson loop code.  This is a checkin for Alan Irving

2004-04-26 12:02  mcneile

	* mainprogs/tests/t_fuzwilp.cc: Test code for the fuzzed Wilson
	  loop code.  This has been tested by Alan Irving against UKQCD and
	  MILC codes.

2004-04-26 11:47  bjoo

	* lib/: actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  io/eigen_io.cc: Got rid of QDP_info in zolo4

2004-04-26 07:22  bjoo

	* tests/multi_propagator_comp/:
	  collect_multi_propcomp_szinev.linux-scalar-intel.xml,
	  multi_propagator_comp_zolo4_szinev_c0.linux-scalar-intel.xml,
	  multi_propagator_comp_zolo4_szinev_c1.linux-scalar-intel.xml,
	  multi_propagator_comp_zolo4_szinev_c2.linux-scalar-intel.xml,
	  run_szinev.sh: Added SZIN ev results for multi_prop_comp

2004-04-26 07:19  bjoo

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/io/eigen_io.cc, lib/io/eigen_io.h, lib/io/param_io.cc,
	  lib/io/param_io.h, mainprogs/main/multi_propagator.cc,
	  mainprogs/main/multi_propagator_comp.cc,
	  mainprogs/main/propagator.cc, mainprogs/main/propagator_comp.cc,
	  mainprogs/main/seqprop.cc, mainprogs/main/seqprop_comp.cc,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c0.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c1.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_szinev_c2.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_szinev_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_szinev_c0.xml.ini,
	  tests/t_ovlap_bj/eigenvector.xml: Added support for Reading EV-s
	  in SZIN format. Must provide e-values in XML tho.

2004-04-24 12:47  edwards

	* tests/seqsource/prop_seqsource_v1.xml.ini: First version.

2004-04-24 04:10  bjoo

	* mainprogs/main/seqprop.cc: Fixed typos

2004-04-23 23:35  edwards

	* lib/io/: param_io.cc, param_io.h: Support for SeqSourceType
	  reading/writing.

2004-04-23 23:28  edwards

	* mainprogs/main/make_source.cc: Changed gauge init stuff to call
	  gaugeStartup. Removed extraneous stuff about gauge fixing. Fixed
	  some doxygen comments.

2004-04-23 23:26  edwards

	* mainprogs/main/seqsource.cc: First version.

2004-04-23 23:25  edwards

	* mainprogs/main/Makefile.am: Added seqsource to EXTRA programs.

2004-04-23 23:25  edwards

	* tests/seqsource/seqsource_v1.xml.ini: Input file

2004-04-23 20:07  ikuro

	* mainprogs/main/sink_smearing.cc: [no log message]

2004-04-23 19:58  ikuro

	* mainprogs/main/make_source.cc: [no log message]

2004-04-23 16:47  tag chroma1-5-5

2004-04-23 16:47  edwards

	* lib/util/gauge/: gauge_startup.cc, gauge_startup.h: Narrowed down
	  include files. Added doxygen comments.

2004-04-23 16:31  edwards

	* NEWS: Info on 1.5.5.

2004-04-23 12:58  bjoo

	* tests/seqprop_comp/:
	  seqprop_collect_nonrel_v3.linux-scalar-intel.xml,
	  seqprop_comp_nonrel_v3.ini, seqprop_comp_nonrel_v3.xml.ini:
	  Checked that seqprop_comp and seqprop_collect give same results
	  as seqprop

2004-04-23 11:54  bjoo

	* lib/actions/ferm/qprop/quarkprop4_w.cc,
	  mainprogs/main/Makefile.am, mainprogs/main/seqprop.cc,
	  mainprogs/main/seqprop_collect.cc,
	  mainprogs/main/seqprop_comp.cc,
	  tests/seqprop_comp/seqprop_comp_nonrel_v3.ini,
	  tests/seqprop_comp/seqprop_comp_v3.xml.ini: Added seqprop_comp

2004-04-23 07:23  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/io/fermact_paramio.cc,
	  lib/io/zolotarev5d_fermact_paramio_w.cc,
	  mainprogs/main/Makefile.am,
	  mainprogs/main/collect_multi_propcomp.cc,
	  mainprogs/main/collect_propcomp.cc, mainprogs/main/propagator.cc,
	  mainprogs/main/propagator_comp.cc,
	  tests/multi_propagator_comp/run.sh,
	  tests/propagator_comp/propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c1.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo4_c2.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c0.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c0.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c1.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c1.xml.ini,
	  tests/propagator_comp/propagator_comp_zolo5_c2.linux-scalar-intel.xml,
	  tests/propagator_comp/propagator_comp_zolo5_c2.xml.ini,
	  tests/propagator_comp/run_zolo4.sh,
	  tests/propagator_comp/run_zolo5.sh: Added component based
	  propagator (non multishift) and added Zolotarev5D operator to
	  propagator and propagator_comp. Reworked propagator collection
	  scripts

2004-04-23 07:09  bjoo

	* tests/propagator/: propagator_zolo5d_v5.linux-scalar-intel.xml,
	  propagator_zolo5d_v5.xml.ini: Added Zolo5D sample input files

2004-04-23 04:55  bjoo

	* lib/io/: fermact_paramio.h, io_w.h, param_io.cc, param_io.h,
	  zolotarev4d_fermact_paramio.cc, zolotarev4d_fermact_paramio.h,
	  zolotarev4d_fermact_paramio_w.cc,
	  zolotarev4d_fermact_paramio_w.h,
	  zolotarev5d_fermact_paramio_w.cc,
	  zolotarev5d_fermact_paramio_w.h: Moved zolo_paramio_files to have
	  w extension

2004-04-22 22:45  edwards

	* scripts/wallformfac_nucl.pl: Fixed up filenames.

2004-04-22 15:49  tag chroma1-5-4

2004-04-22 15:49  edwards

	* NEWS: Info on 1.5.4.

2004-04-22 14:54  edwards

	* scripts/config.pl: Sample config.pl script.

2004-04-22 13:01  edwards

	* lib/meas/hadron/baryon_w.cc: BUG FIX!!! The case 9,10,11  were
	  wrong! Invalid conversion from SZIN.	Also changed the
	  normalization of the case 6 (put in the 1/2's).  Now, all results
	  agree to SZIN (making sure to use Dirichlet - this turns off
	  SZIN's default use of time reversal) - upto the usual kappa
	  normalizations in SZIN (but not in Chroma). Also checked with
	  time-reversal on and used antiperiodic BC.

	  I don't recall why now, but SZIN has a barprop[t] = 0.5 * hsum .
	  E.g., there is a 1/2 stuck in there. Probably, for SZIN since
	  time reversal was usually on, the 1/2 would average over the
	  forward and time-reversed versions.  For Chroma, I assume the 1/2
	  was for averaging. So, by default barprop[t] = hsum[t] (no 1/2).
	  But under time-reversal, the forward and reversed pieces are
	  added and THEN a 1/2 is multiplied (so, there is averaging).

2004-04-22 12:49  bjoo

	* mainprogs/main/: multi_propagator.cc, multi_propagator_comp.cc:
	  Added overlap_state_info Param struct and gauge startup
	  convenience function. Tidyed up propagator zolo4d case

2004-04-22 12:25  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/io/overlap_state_info.cc, lib/io/overlap_state_info.h,
	  lib/io/zolotarev4d_fermact_paramio.cc,
	  lib/io/zolotarev4d_fermact_paramio.h, lib/util/gauge/gauge.h,
	  lib/util/gauge/gauge_startup.cc, lib/util/gauge/gauge_startup.h,
	  mainprogs/main/collect_propcomp.cc,
	  mainprogs/main/multi_propagator.cc, mainprogs/main/propagator.cc:
	  Added overlap_state_info Param struct and gauge startup
	  convenience function. Tidyed up propagator zolo4d case

2004-04-21 22:04  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Added trivial documentation.

2004-04-21 21:38  edwards

	* lib/meas/hadron/baryon_w.cc: Even more comments.

2004-04-21 21:34  edwards

	* lib/meas/hadron/baryon_w.cc: Change comments some.

2004-04-21 21:27  edwards

	* lib/meas/hadron/baryon_w.cc: Added more comments - show
	  interpolating operators for cases.

2004-04-21 14:48  edwards

	* lib/meas/hadron/baryon_w.cc: Added some comments.

2004-04-21 14:41  tag chroma1-5-3

2004-04-21 14:41  edwards

	* NEWS: Info on 1.5.3

2004-04-21 13:25  edwards

	* lib/io/: barcomp_io.cc, barcomp_io.h, kyuqprop_io.h, param_io.cc,
	  param_io.h: Removed dos-isms (the carriage-returns).

2004-04-21 11:22  edwards

	* docs/chromadoc: Removed ../include

2004-04-20 23:23  edwards

	* scripts/wallformfac_nucl.pl: Experimental version.

2004-04-20 23:23  edwards

	* scripts/wallformfac_pion.pl: Small changes. Print entire t-axis
	  range.

2004-04-20 23:14  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Bug fixes.

2004-04-20 09:11  bjoo

	* tests/multi_propagator/multi_propagator_zolo4_v5.xml.ini: Updated
	  this

2004-04-20 09:08  bjoo

	* lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.h, lib/io/param_io.cc,
	  lib/io/param_io.h, lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  mainprogs/main/Makefile.am, mainprogs/main/collect_propcomp.cc,
	  mainprogs/main/multi_propagator.cc,
	  mainprogs/main/multi_propagator_comp.cc,
	  tests/multi_propagator_comp/collect_propcomp.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c0.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c0.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c1.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c1.xml.ini,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c2.linux-scalar-intel.xml,
	  tests/multi_propagator_comp/multi_propagator_comp_zolo4_c2.xml.ini,
	  tests/multi_propagator_comp/run.sh: Added multi mass component
	  based solves and propagator collection program

2004-04-20 01:04  ikuro

	* lib/meas/hadron/DjDk_w.cc: [no log message]

2004-04-19 10:36  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Bug fix.

2004-04-18 22:30  edwards

	* mainprogs/main/wallformfac.cc: New output driven around different
	  formfacs.

2004-04-18 16:41  edwards

	* mainprogs/main/wallformfac.cc: Bug fix.

2004-04-18 16:39  edwards

	* lib/meas/hadron/wallnuclff_w.cc, lib/meas/hadron/wallpionff_w.cc,
	  mainprogs/main/wallformfac.cc: Made driver over array of types of
	  form-factors.

2004-04-18 16:17  edwards

	* lib/meas/hadron/wallpionff_w.cc: Added seq_src level for
	  compatibility with other formfac codes.

2004-04-18 16:16  edwards

	* mainprogs/main/wallformfac.cc: Turned on wallnuclformfac.

2004-04-18 16:15  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Added nonlocal current.

2004-04-17 05:48  bjoo

	* lib/actions/ferm/invert/minvcg.cc: Bugfix in minvcg -- didnt
	  notice this before as my test masses were very close together,
	  but the convergence was actually controlled by the last mass

2004-04-16 23:36  edwards

	* mainprogs/main/bar3ptfn.cc: Changed throw's to QDP_abort(1);

2004-04-16 18:03  bjoo

	* lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  mainprogs/main/multi_propagator.cc, mainprogs/main/propagator.cc,
	  tests/make_source/make_source_point_src_v5.linux-scalar-intel.xml,
	  tests/make_source/make_source_point_src_v5.xml.ini,
	  tests/multi_propagator/multi_propagator_zolo4_v5.linux-scalar-intel.xml,
	  tests/multi_propagator/multi_propagator_zolo4_v5.xml.ini,
	  tests/propagator/propagator_zolo4d_v5.linux-scalar-intel.xml,
	  tests/propagator/propagator_zolo4d_v5.xml.ini,
	  tests/t_ritz/t_ritz_KS.xml.in: Added Zolo 4D test files and
	  tidyed up

2004-04-16 17:01  kostas

	* mainprogs/main/: Makefile.am, dwf_seqprop.cc: added a dwf_seqprop
	  executable (works with DWF only)

2004-04-16 16:18  bjoo

	* lib/io/fermact_paramio.h, lib/io/zolotarev4d_fermact_paramio.h,
	  mainprogs/main/multi_propagator.cc: Zolo seems to work now

2004-04-16 15:28  bjoo

	* lib/io/: zolotarev4d_fermact_paramio.cc,
	  zolotarev4d_fermact_paramio.h: Added initial
	  zolotarev4d_fermact_paramio stuff

2004-04-16 15:27  bjoo

	* mainprogs/main/: seqprop.cc, spectrum_w.cc: Fixed spectrum_w and
	  seqprop

2004-04-16 13:04  bjoo

	* lib/io/fermact_paramio.h, lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  mainprogs/main/multi_propagator.cc: Added multi_propagator for
	  Zolo4D multi massery. Seems to work even

2004-04-16 10:58  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h, lib/io/eigen_io.cc,
	  lib/io/eigen_io.h, lib/io/fermact_paramio.cc, lib/io/io.h,
	  lib/io/io_w.h, lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  mainprogs/main/Makefile.am, mainprogs/main/propagator.cc,
	  mainprogs/tests/t_ovlap_bj.cc, tests/t_ovlap_bj/DATA,
	  tests/t_ovlap_bj/t_ovlap.xml: Propagator now does Zolo4D

2004-04-15 10:43  bjoo

	* lib/Makefile.am, lib/io/eigen_io.cc, lib/io/fermact_paramio.cc,
	  lib/io/fermact_paramio.h, lib/io/param_io.cc, lib/io/param_io.h,
	  lib/io/qprop_io.cc, lib/io/qprop_io.h,
	  mainprogs/main/propagator.cc, mainprogs/tests/t_read_eigen.cc,
	  mainprogs/tests/t_ritz_KS.cc: Added generalised qprop_io FermAct
	  reading

2004-04-15 10:38  bjoo

	* tests/propagator/: propagator_v5.linux-scalar-intel.xml,
	  propagator_v5.xml.ini: Added test files for version 5 of
	  propagator param file

2004-04-14 23:43  edwards

	* lib/io/kyugauge_io.cc: Flipped row/col order.

2004-04-14 23:33  edwards

	* lib/io/kyugauge_io.cc: Added conversions.

2004-04-14 23:32  edwards

	* lib/io/kyugauge_io.cc: Changed to double precision.

2004-04-14 23:30  edwards

	* lib/io/io.h: Added kyugauge_io.h

2004-04-14 23:29  edwards

	* mainprogs/main/cfgtransf.cc: Added Kentucky gauge reader.

2004-04-14 23:25  edwards

	* lib/Makefile.am: Added kyugauge_io.{h,cc}

2004-04-14 23:23  edwards

	* lib/io/: kyugauge_io.cc, kyugauge_io.h: Kentucky gauge IO.

2004-04-14 23:22  edwards

	* lib/io/kyuqprop_io.cc: Move out temp constructors to lower
	  overhead.

2004-04-14 17:23  edwards

	* lib/io/param_io.cc: Added a KYU in prop type writer

2004-04-14 17:00  edwards

	* mainprogs/main/qproptransf.cc: Added KYU qprop reader.

2004-04-14 16:59  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Some more mods.

2004-04-14 16:59  edwards

	* lib/io/: kyuqprop_io.cc, kyuqprop_io.h: Kentucky qprop readers.

2004-04-14 16:59  edwards

	* lib/io/: param_io.cc, param_io.h: Added PROP_TYPE_KYU

2004-04-14 16:58  edwards

	* lib/io/io_w.h: Added kyuqprop_io.h

2004-04-14 16:58  edwards

	* lib/Makefile.am: Added kyuqprop_io.{h,cc}

2004-04-14 16:03  edwards

	* lib/io/readszinqprop_w.h: Fixed doxygen comments.

2004-04-14 15:20  edwards

	* lib/util/ferm/transf.h: Copied doxygen comments from CC code.

2004-04-14 10:09  bjoo

	* tests/t_ritz/DATA_rest_read: Reader test file

2004-04-14 08:53  bjoo

	* lib/Makefile.am, lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/io/eigen_io.cc, lib/io/eigen_io.h, lib/io/param_io.cc,
	  lib/meas/eig/ritz.cc, lib/meas/eig/sn_jacob.cc,
	  lib/meas/eig/sn_jacob_array.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_read_eigen.cc, mainprogs/tests/t_ritz_KS.cc:
	  Added eigen_io stuff for Wilson Fermions  only

2004-04-14 08:50  bjoo

	* tests/t_ritz/: t_ritz_KS.xml.in, t_ritz_KS.xml.out: New
	  t_ritz_KS.xml.in/out stuff

2004-04-14 08:46  bjoo

	* tests/t_ritz/: t_ritz_KS.xml.in, t_ritz_KS.xml.out: Removed
	  sample input and output for t_ritz_KS

2004-04-14 00:43  edwards

	* lib/meas/hadron/hadron_w.h: Added wallnuclff_w.h

2004-04-14 00:42  edwards

	* lib/Makefile.am: Added wallnuclff_w.{h,cc}

2004-04-14 00:42  edwards

	* lib/meas/hadron/: wallnuclff_w.cc, wallnuclff_w.h: Now compiles.

2004-04-14 00:00  edwards

	* lib/meas/hadron/wallnuclff_w.cc: Small fix.

2004-04-12 23:07  edwards

	* mainprogs/main/cfgtransf.cc: Added a	writeSzinReplica  option.

2004-04-12 23:06  edwards

	* lib/io/: writeszin.cc, writeszin.h: Added a writeSzinReplica.

2004-04-12 14:26  edwards

	* mainprogs/main/qpropadd.cc: Fixes.

2004-04-12 14:26  edwards

	* tests/qpropadd/qpropadd_v1.xml.ini: New files.

2004-04-12 11:42  edwards

	* mainprogs/main/qpropadd.cc: First version of prop adder.

2004-04-12 11:42  edwards

	* mainprogs/main/Makefile.am: Added qpropadd to EXTRA programs.

2004-04-11 01:35  edwards

	* lib/meas/hadron/: barseqsrc_w.h, mesonseqsrc_w.h, walfil_w.cc,
	  wallnuclff_w.cc, wallpionff_w.cc, wallpionff_w.h: Removed
	  dos-isms.

2004-04-11 01:05  edwards

	* mainprogs/main/qqq_w.cc: Modified to support 3 props. Turned on
	  output of barcomp.

2004-04-11 01:05  edwards

	* tests/qqq_w/: qqq_w_v3.linux-scalar-intel.barcomp,
	  qqq_w_v3.linux-scalar-intel.xml, qqq_w_v3.xml.ini: New tests for
	  3 prop version of code.

2004-04-07 22:01  edwards

	* scripts/wallformfac_pion.pl: Small changes.

2004-04-07 17:59  edwards

	* mainprogs/tests/: invcg2_timing_hacks_3.cc,
	  invcg2_timing_hacks_3.h: Keep these just for chuckles. They show
	  a grungy way to get sse blas into szin.

2004-04-07 17:57  edwards

	* scripts/wallformfac_pion.pl: Not a working version yet - needs
	  major editing...

2004-04-07 07:06  bjoo

	* lib/io/readszinferm_w.cc: Now works in single and double, and
	  tested on a large IBM machien

2004-04-07 00:39  edwards

	* mainprogs/main/wallformfac.cc: New driver over types of
	  formfactors.

2004-04-07 00:38  edwards

	* lib/meas/hadron/wallpionff_w.cc: Bug fix in non-local current.

2004-04-06 22:00  edwards

	* tests/wallpionff/: make_source_sh.ini, make_source_wl.ini,
	  prop_sh.ini, prop_wl.ini, scalar.csh, spectrum_sh.ini,
	  spectrum_wl.ini: Test codes

2004-04-06 17:46  edwards

	* lib/meas/hadron/wallpionff_w.cc: Added non-local current.

2004-04-06 11:40  bjoo

	* mainprogs/tests/t_ovlap_bj.cc: Fixed xml.close() typo at end

2004-04-06 11:27  bjoo

	* lib/io/: readszin.cc, writeszin.cc: Added support for
	  reading/writing from double precision

2004-04-06 00:22  edwards

	* tests/: gfix.cfg1,
	  make_source/make_source_wall_v5.linux-scalar-intel.xml,
	  make_source/make_source_wall_v5.xml.ini,
	  propagator/propagator_wall_v4.xml.ini,
	  propagator/propagator_wall_v4.xml.linux-scalar-intel.xml,
	  spectrum_w/spectrum_wall_v10.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_wall_v10.xml.ini,
	  wallpionff/wallformfac_v1.linux-scalar-intel.xml,
	  wallpionff/wallformfac_v1.xml.ini: Changed gfix.cfg1 to now be
	  produced by SZINQIO in cfgtransf.  Use SZINQIO for all wall work.

2004-04-06 00:20  edwards

	* mainprogs/main/: bar3ptfn.cc, hypsmear.cc, make_source.cc,
	  propagator.cc, qproptransf.cc, qqq_w.cc, seqprop.cc,
	  sink_smearing.cc, spectrum_w.cc, wallformfac.cc: Added SZINQIO
	  support.

2004-04-06 00:20  edwards

	* mainprogs/main/cfgtransf.cc: Added QIO reading/writing of
	  configs.

2004-04-06 00:18  tag chroma1-5-2

2004-04-06 00:18  edwards

	* NEWS: News on 1.5.2

2004-04-05 20:33  edwards

	* tests/cfgtransf/: gfix.ini, gfix.linux-scalar-intel.xml: Start at
	  gauge fixing writing to QIO. Something not correct yet....

2004-04-05 16:59  edwards

	* tests/make_source/make_source_v5.linux-scalar-intel.xml: Modified
	  output format.

2004-04-05 16:35  edwards

	* mainprogs/main/Makefile.am: Moved wallformfac.cc to
	  check_PROGRAMS

2004-04-05 16:26  edwards

	* lib/Makefile.am: Added gauge_io.h and gauge_io.cc

2004-04-05 15:48  edwards

	* lib/io/: gauge_io.cc, gauge_io.h: Added gauge IO support.

2004-04-05 15:48  edwards

	* lib/io/io.h: Added gauge_io.h

2004-04-05 15:47  edwards

	* mainprogs/tests/t_io.cc: Added and improved tests

2004-04-05 15:28  edwards

	* lib/meas/hadron/stoch_var.cc: Fixed up doxygen comments and
	  includes - now more restrictive involving less re-compilation.

2004-04-05 15:27  edwards

	* lib/meas/hadron/stoch_var.h: Fixed up doxygen comments.

2004-04-05 12:44  edwards

	* tests/spectrum_w/: spectrum_wall_v10.linux-scalar-intel.xml,
	  spectrum_wall_v10.linux-scalar-intel.xml.gz: Compressed the file.

2004-04-05 12:43  edwards

	* tests/: make_source/make_source_wall_v5.linux-scalar-intel.xml,
	  make_source/make_source_wall_v5.xml.ini,
	  propagator/propagator_wall_v4.xml.ini,
	  propagator/propagator_wall_v4.xml.linux-scalar-intel.xml,
	  spectrum_w/spectrum_wall_v10.linux-scalar-intel.xml,
	  spectrum_w/spectrum_wall_v10.xml.ini: Wall test input/output
	  files.

2004-04-05 12:36  edwards

	* lib/io/: param_io.h, param_io.cc: Added CFG_TYPE_SZINQIO

2004-04-05 12:33  edwards

	* tests/gfix.cfg1: Gauge fixed input.

2004-04-05 12:30  edwards

	* tests/spectrum_w/: spectrum_w_v10.linux-scalar-intel.xml.gz,
	  spectrum_w_v10.xml.ini: Version 10 input and output.

2004-04-05 12:26  edwards

	* mainprogs/main/spectrum_w.cc: Moved init of sftmom down after
	  prop is read. Eliminated read of j_decay from input.

2004-04-05 00:34  edwards

	* lib/meas/hadron/wall_qprop_w.cc: Changed to using copymask. The
	  "where" form was incorrect.

2004-04-05 00:19  edwards

	* mainprogs/main/spectrum_w.cc: Added initial support for Wall
	  sources/sinks.

2004-04-05 00:12  edwards

	* lib/Makefile.am: Added compilation of wall_qprop_w.cc

2004-04-05 00:12  edwards

	* lib/meas/hadron/hadron_w.h: Added include of wall_qprop_w.h

2004-04-05 00:12  edwards

	* lib/meas/hadron/wall_qprop_w.cc: Changed getSubset() to getSet()

2004-04-04 23:47  edwards

	* tests/wallpionff/wallformfac_v1.linux-scalar-intel.xml: Sample
	  output file.

2004-04-03 23:13  edwards

	* tests/wallpionff/wallformfac_v1.xml.ini: New input format.

2004-04-03 23:06  edwards

	* mainprogs/main/wallformfac.cc: Added saving of prop input.

2004-04-03 22:58  edwards

	* mainprogs/main/wallformfac.cc: Added t_sink read.

2004-04-03 22:57  edwards

	* mainprogs/main/wallformfac.cc: Fixes.

2004-04-03 22:54  edwards

	* mainprogs/main/wallformfac.cc: Updated to new chroma prop model.

2004-04-03 22:02  edwards

	* lib/io/param_io.cc: Added more of the required cases to CfgType
	  reader/writer.

2004-04-02 17:18  edwards

	* mainprogs/main/qproptransf.cc: Oops. Forgot to write out the
	  SeqProp headers in SEQPROP section of code.

2004-04-02 17:14  edwards

	* mainprogs/main/bar3ptfn.cc: Added and moved a few diagnostic
	  messages.

2004-04-01 23:54  edwards

	* tests/qproptransf/qtransf_seqprop_v1.xml.ini: Cleaned out
	  dos-isms.

2004-04-01 16:44  tag chroma1-5-1

2004-04-01 16:44  edwards

	* tests/: bar3ptfn/bar3ptfn_nonrel_v7.linux-scalar-intel.dat,
	  bar3ptfn/bar3ptfn_nonrel_v7.linux-scalar-intel.xml,
	  bar3ptfn/bar3ptfn_nonrel_v7.xml.ini,
	  seqprop/seqprop_nonrel_v3.linux-scalar-intel.xml,
	  seqprop/seqprop_nonrel_v3.xml.ini: A non-relativ. nucleon test
	  case.

2004-04-01 16:36  edwards

	* NEWS: Info on 1.5.1

2004-04-01 16:07  edwards

	* tests/seqprop/: seqprop_nonrel_v3.linux-scalar-intel.xml,
	  seqprop_nonrel_v3.xml.ini: Non-relativistic test case.

2004-04-01 16:07  edwards

	* tests/seqprop/: seqprop_v3.linux-scalar-intel.xml,
	  seqprop_v3.xml.ini: Updated for version 3 (relativistic)

2004-04-01 16:04  edwards

	* tests/seqprop/seqprop_v2.linux-scalar-intel.xml: Updated to
	  reflect new output from this mode.

2004-04-01 13:10  edwards

	* mainprogs/main/: propagator.cc, seqprop.cc: Added support for
	  non-relativistic quark props.

2004-04-01 13:09  edwards

	* lib/: actions/ferm/qprop/quarkprop4_w.cc,
	  actions/ferm/qprop/quarkprop4_w.h, io/qprop_io.cc, io/qprop_io.h:
	  Added support for nonrelativistic quark props.

2004-03-31 23:16  edwards

	* tests/qproptransf/qtransf_seqprop_v1.xml.ini: Input file.

2004-03-31 23:14  edwards

	* mainprogs/main/Makefile.am: Moved qproptransf to check_PROGRAMS

2004-03-31 23:12  edwards

	* mainprogs/main/qproptransf.cc: Switched to completely using XML.
	  Added SciDAC output format.

2004-03-29 16:34  edwards

	* mainprogs/: main/my_qqq.cc, tests/t_dwflocality.cc,
	  tests/t_ldwfdslash.cc, tests/t_ov_pbp.cc, tests/t_ovlap5d_bj.cc,
	  tests/t_ovlap_bj.cc, tests/t_precdwf.cc, tests/t_ritz.cc,
	  tests/t_ritz5d_KS.cc, tests/t_ritz_KS.cc: Removed dos-induced
	  carriage-returns.

2004-03-29 16:33  edwards

	* lib/update/: update.h, heatbath/heatbath.h, heatbath/mciter.h,
	  heatbath/mciter32.h, heatbath/monte.h, heatbath/su3hb.h,
	  heatbath/su3over.h, molecdyn/hamilton.h, molecdyn/hybrid.h,
	  molecdyn/molecdyn.h: Removed dos induced carriage-returns.

2004-03-29 16:33  edwards

	* lib/actions/gauge/: wilson_gaugeact.cc, wilson_gaugeact.h:
	  Removed dos induced carriage-return.

2004-03-29 16:32  edwards

	* lib/actions/ferm/: fermacts/asqtad_state.h,
	  fermacts/prec_dwf_fermact_base_array_w.cc,
	  fermacts/stag_fermact_s.cc, fermacts/stag_fermact_s.h,
	  fermacts/unprec_ovext_fermact_array_w.cc,
	  fermacts/zolotarev5d_fermact_array_w.cc, linop/ldwfdslash_w.cc,
	  linop/ldwfdslash_w.h, linop/naik_term_s.cc,
	  qprop/prec_dwf_fermact_qprop_array_w.cc, qprop/quarkprop4_w.h,
	  qprop/unprec_qprop_w.h: Removed dos-isms. Removed dos induced
	  carriage-return.

2004-03-29 16:31  edwards

	* lib/: chroma_scalarsite_defs.h, chroma_scalarsite_dwdefs.h,
	  fermbc.h, gaugebc.h, lib.h: Removed dos-isms.

2004-03-25 18:18  edwards

	* mainprogs/tests/t_invert3_precwilson.cc: Added proginfo call.

2004-03-25 18:18  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Added xml writing of info.

2004-03-25 09:31  bjoo

	* mainprogs/tests/: Makefile.am, invcg2_prec_wilson.cc,
	  invcg2_prec_wilson.h, invcg2_timing_hacks_2.cc,
	  invcg2_timing_hacks_2.h, t_invert4_precwilson.cc:
	  invcg2_prec_wilson supersolver is now correct

2004-03-25 06:42  bjoo

	* mainprogs/tests/: invcg2_timing_hacks_2.cc,
	  invcg2_timing_hacks_2.h, t_invert4_precwilson.cc: Now compiles on
	  non-QCDOC after addition of vaxpy_norm3 into the
	  scalarsite_generic_blas in QDP++

2004-03-24 13:17  bjoo

	* AUTHORS: AUTHORS

2004-03-24 12:38  bjoo

	* mainprogs/tests/: Makefile.am, invcg2_timing_hacks_2.cc,
	  invcg2_timing_hacks_2.h, t_invert4_precwilson.cc: InvCG2_timing
	  hacks v2 now fixed

2004-03-24 11:17  bjoo

	* mainprogs/tests/: Makefile.am, invcg2_timing_hacks_2.cc,
	  invcg2_timing_hacks_2.h, t_invert4_precwilson.cc: Added
	  supersolvertest

2004-03-24 10:24  kostas

	* mainprogs/main/hypsmear.cc: replaced printf with QCDIO::cout

2004-03-23 15:48  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: I have modified the code
	  so that the staggered nucleon operator is computed.

2004-03-23 15:46  mcneile

	* lib/meas/hadron/: baryon_s.cc, baryon_s.h: I have changed the
	  data structure of the input propagator to the LatticePropagator
	  type used through out the code. This is done in an ugly manner.
	  The code now runs but the output looks a bit weird and not
	  totally gauge invariant.

2004-03-23 15:17  kostas

	* mainprogs/main/hypsmear.cc: hypsmear now reads MILC

2004-03-23 15:17  kostas

	* lib/io/: param_io.cc, readmilc.cc, writemilc.cc: Fixed up the
	  MILC IO

2004-03-23 14:26  mcneile

	* lib/meas/hadron/baryon_s.h: The header file for staggered
	  baryons.

2004-03-23 14:24  mcneile

	* lib/meas/hadron/hadron_s.h: I have added the header file for the
	  staggeed baryons.

2004-03-23 14:21  mcneile

	* lib/meas/hadron/baryon_s.cc: This is the nucleon operator that I
	  converted from SZIN.	I have checked that it compiles, but have
	  not compared the output against the MILC code.

2004-03-23 14:19  mcneile

	* lib/Makefile.am: I have added the staggered nucleon operator to
	  this file.

2004-03-23 11:24  bjoo

	* lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  mainprogs/main/make_source.cc,
	  mainprogs/tests/t_invert3_precwilson.cc,
	  mainprogs/tests/t_lwldslash_pab.cc: Now seems a lot happier

2004-03-23 08:44  bjoo

	* lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  mainprogs/tests/t_invert3_precwilson.cc: Rewrote the
	  prec_wils_lin_op

2004-03-22 12:34  bjoo

	* mainprogs/tests/: t_invert3_precwilson.cc: Added more stuff

2004-03-22 12:19  bjoo

	* mainprogs/tests/t_invert3_precwilson.cc: Added timing for
	  EvenOddPrecWilson

2004-03-22 10:29  bjoo

	* lib/actions/ferm/invert/invcg2_timing_hacks.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_invert3_precwilson.cc: Added invcg2 timing
	  hacks and t_invert3_precwilson

2004-03-22 07:48  bjoo

	* aclocal.m4, configure, docs/chromadoc, lib/Makefile.am,
	  lib/actions/ferm/invert/invcg2_timing_hacks.cc,
	  lib/actions/ferm/invert/invcg2_timing_hacks.h: Added
	  invcg2_timing_hacks

2004-03-22 07:42  bjoo

	* mainprogs/tests/t_lwldslash_sse.cc: Removed a vi-typo

2004-03-18 16:57  kostas

	* mainprogs/tests/t_dwflocality.cc: one little bug

2004-03-17 10:33  kostas

	* mainprogs/tests/t_dwflocality.cc: fixed the formula

2004-03-16 23:06  edwards

	* lib/fermact.h: Made  "qprop" abstract virtual in
	  EvenOddPrecWilsonTypeFermAct<multi1d<T>>.

2004-03-16 23:05  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_base_w.h: Added
	  missing return 0;

2004-03-16 22:37  edwards

	* lib/actions/ferm/fermacts/: unprec_dwf_fermact_array_w.h,
	  unprec_dwf_fermact_base_array_w.h,
	  unprec_ovext_fermact_array_w.h: Added return 0  in cases
	  requiring a return value.

2004-03-16 22:37  edwards

	* lib/fermbc.h: Fixed the QDP_error_exit.

2004-03-16 22:33  edwards

	* lib/: fermbc.h, gaugebc.h: Changed QDP_abort to QDP_error_exit.

2004-03-16 22:29  edwards

	* other_libs/intel_sse_wilson_dslash/aclocal.m4: Induced changes

2004-03-16 22:28  edwards

	* other_libs/intel_sse_wilson_dslash/lib/Makefile.am: Fixed
	  CXXFLAGS and CFLAGS.

2004-03-16 22:28  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Changed setting
	  of CXX to use QDP compiler. It was setting it to CC !

2004-03-16 22:27  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2004-03-16 22:27  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c:
	  Moved decl with for to before for.

2004-03-16 22:10  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_array_w.h,
	  prec_dwf_fermact_base_w.h: Added return 0 to gamma5 versions
	  (that are not implemented).  Makes the Intel compiler happy.

2004-03-16 22:10  edwards

	* lib/meas/eig/: ischiral_w.cc, ischiral_w.h: Removed meaningless
	  const from Chirality enum

2004-03-16 22:09  edwards

	* lib/gaugebc.h: Changed virtual funcs that should have been really
	  to not implemented - modify and zero.

2004-03-16 22:07  edwards

	* lib/fermbc.h: Made virtual funcs into concrete funcs - modify and
	  zero.

2004-03-16 21:23  kostas

	* aclocal.m4, configure, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_dwflocality.cc: Test of dwf locality

2004-03-15 22:12  bjoo

	* lib/actions/ferm/linop/dslash_w.h: Added PABWilsonDslash
	  definition here

2004-03-14 11:29  edwards

	* docs/chromadoc: Fixes.

2004-03-11 12:53  edwards

	* tests/spectrum_w/spectrum_w_v9.linux-scalar-intel.xml.gz: Changed
	  time_rev to false in tests. Other small changes in output.

2004-03-11 12:39  edwards

	* tests/spectrum_w/spectrum_w_v9.xml.ini: Turn off time-reversal.

2004-03-09 16:44  bjoo

	* mainprogs/tests/t_lwldslash_pab.cc: Stopwatchified
	  t_lwldslash_pab.cc

2004-03-09 16:31  bjoo

	* mainprogs/tests/t_lwldslash_pab.cc: Added test file for
	  t_lwldslash_pab

2004-03-09 15:43  bjoo

	* configure, configure.ac, lib/Makefile.am,
	  lib/actions/ferm/linop/lwldslash_w_pab.cc,
	  lib/actions/ferm/linop/lwldslash_w_pab.h,
	  mainprogs/tests/Makefile.am: Added --enable-pab-wilson-dslash

2004-03-09 11:30  mcneile

	* mainprogs/tests/Makefile.am: I have added the trial NRQCD program
	  to the makefile.

2004-03-09 11:29  mcneile

	* mainprogs/tests/t_propagator_nrqcd.cc: This is a program that
	  shows some of the chroma functionality that could be used to
	  write a NRQCD code. This is meant to help the Glasgow group get
	  started.  This program has not been tested.

2004-03-03 22:20  edwards

	* mainprogs/main/qproptransf.cc: First version of propagator
	  transformation program.

2004-03-03 21:13  edwards

	* aclocal.m4, configure: Induced changes.

2004-03-03 21:08  edwards

	* mainprogs/main/Makefile.am: Added qproptransf to EXTRA programs.

2004-03-03 11:27  mcneile

	* lib/meas/hadron/: stag_propShift_s.cc, stag_propShift_s.h: These
	  are routines required for staggered stuff.  Checkin for Steve
	  Miller.

2004-03-03 06:09  mcneile

	* lib/Makefile.am: Checked in for steve miller.  The new staggered
	  code is there.  Also some routines were icorrectly added to the
	  wilson targets.

2004-03-03 06:07  mcneile

	* tests/t_asqtad_prop/XMLDAT.reference: This should now be valid
	  xml.	Check in for steve miller

2004-03-03 06:05  mcneile

	* tests/t_asqtad_prop/DATA_v2: REference data for the disconnected
	  loops stuff.

2004-03-03 06:05  mcneile

	* tests/t_asqtad_prop/: DISC_DATA_v2, DISC_XMLDAT.reference:
	  REference files for the disconnecetd loops

2004-03-03 06:00  mcneile

	* lib/actions/ferm/linop/asq_dsl_s.cc: Check in for steve miller
	  for a clean valgrind.

2004-03-03 05:54  mcneile

	* lib/actions/ferm/linop/asqtad_mdagm_s.cc: Checki for Steve
	  Miller.  Required for a clean valgrind.

2004-03-03 05:50  mcneile

	* lib/actions/ferm/qprop/staggered_qprop.cc: Check in for steve
	  miller for a clean valgrind run.  Not so sure I like:tmp = tmp1 =
	  tmp2 = zero;

2004-03-03 05:48  mcneile

	* lib/actions/ferm/invert/invcg1.cc: Check in for Steve Miller to
	  get a clean valgrind run

2004-03-03 05:46  mcneile

	* lib/meas/hadron/hadron_s.h: Headers for staggered scalars and
	  shifting added Check in for steve miller

2004-03-03 05:43  mcneile

	* lib/meas/hadron/hadron.h: Headers added for z2 noise and
	  stochastic stuff.

2004-03-03 05:41  mcneile

	* lib/meas/hadron/z2_src.h: Fixed typo in comments noticed by Steve
	  Miller

2004-03-03 04:57  mcneile

	* lib/meas/hadron/stoch_var.cc: Check in for steve miller.
	  Stochastic estimate of fermionm loops

2004-03-03 04:55  mcneile

	* lib/meas/hadron/stoch_var.h: Header file for stochatsic noise.
	  Check in for Steve Miller

2004-03-03 04:53  mcneile

	* lib/meas/hadron/stag_scalars_s.cc: Correlator code for scalar
	  staggered fermions.

2004-03-03 04:50  mcneile

	* lib/meas/hadron/stag_scalars_s.h: This is a header for the
	  staggered scalar code.

2004-03-03 04:44  mcneile

	* lib/meas/hadron/pions_follana_s.cc: Checki in for Steve Millar

2004-03-03 04:41  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: Clean up of the routines.
	  Problems with ill-formed XML are fiexd.

2004-03-03 04:38  mcneile

	* mainprogs/tests/t_propagator_s.cc: Checkin for Steve Miller.
	  Some clean up. Problems with non-valid xml fixed.

2004-03-02 20:51  edwards

	* lib/gaugeact.h: Additional member functions.

2004-03-02 20:50  edwards

	* lib/util/gauge/eesu3.cc: Fix.

2004-03-02 20:50  edwards

	* lib/actions/gauge/: wilson_gaugeact.cc, wilson_gaugeact.h: Wilson
	  gauge action support.

2004-02-27 20:41  edwards

	* mainprogs/main/seqprop.cc: Added some debugging comments.

2004-02-26 11:50  edwards

	* mainprogs/main/seqprop.cc: Changed xml_out to xml_seq_src to be
	  consistent with array writing.

2004-02-26 11:38  edwards

	* mainprogs/main/spectrum_w.cc: Added test/write-out of
	  forward_prop	prop_corr.

2004-02-26 00:29  edwards

	* tests/sink_smearing/sink_smearing_v4.linux-scalar-intel.xml:
	  Added test file.

2004-02-26 00:29  edwards

	* tests/sink_smearing/sink_smearing_v4.xml.ini: Added missing
	  smeared_prop_volfmt.

2004-02-26 00:26  edwards

	* mainprogs/main/sink_smearing.cc: Bug fix. Added missing
	  smeared_prop_volfmt  to Prop_t reader.  Otherwise, some junk
	  value passed to writeQprop.

2004-02-26 00:07  edwards

	* mainprogs/main/sink_smearing.cc: Added missing pop(xml_out).

2004-02-25 22:42  edwards

	* mainprogs/main/Makefile.am: Moved sink_smearing to
	  check_PROGRAMS.

2004-02-25 22:41  edwards

	* mainprogs/main/make_source.cc: Added a debugging cout.

2004-02-24 15:26  dru

	* mainprogs/main/ExampleBuildingBlocks.cc:
	  At some point my "cout" statements got changed to "QDPIO:cout"
	  statements.  This seems to require that "QDP_initialize( , )" is
	  called first.

2004-02-23 21:40  edwards

	* lib/io/: param_io.cc, param_io.h: Added  IO_version	back in for
	  our staggered/UK friends.

2004-02-23 16:20  edwards

	* mainprogs/main/sink_smearing.cc: Added missing QDP_finalize.
	  Added missing xml_in.close() and pop(xml_out).

2004-02-22 23:19  tag chroma1-5-0

2004-02-22 23:19  edwards

	* mainprogs/main/cfgtransf.cc: Changed szinGaugeInit to initHeader.

2004-02-22 22:19  edwards

	* NEWS: Info on 1.5.0

2004-02-22 22:18  edwards

	* aclocal.m4, configure: Induced changes.

2004-02-22 22:17  edwards

	* configure.ac: Changed to version 1.5.0

2004-02-22 22:13  edwards

	* mainprogs/main/: bar3ptfn.cc, hypsmear.cc, make_source.cc,
	  propagator.cc, qqq_w.cc, seqprop.cc, sink_smearing.cc,
	  spectrum_w.cc: Major overhaul of input/output model! Now using
	  EXCLUSIVELY SciDAC propagator format for propagators. Now, Param
	  part of input files directly matches
	  source/sink/propagator/seqprop headers of propagators. All
	  ``known'' input of a propagator is derived from its header(s) and
	  used for subsequent calculations.

2004-02-22 22:11  edwards

	* mainprogs/main/Makefile.am: Removed unnecessary -I of include dir
	  which no longer exits.

2004-02-22 22:10  edwards

	* lib/io/: qprop_io.cc, qprop_io.h: Major overhaul of qprop I/O !
	  Now have propagator source/sink headers, as well as for
	  propagator.cc and seqprop.cc style headers.

2004-02-22 22:09  edwards

	* lib/io/: param_io.cc, param_io.h: Added some initHeaders. Added
	  writers of primitive types.

2004-02-22 22:08  edwards

	* lib/io/: barcomp_io.cc, barcomp_io.h: Split off barcomp I/O from
	  qprop_io to here.

2004-02-22 22:08  edwards

	* lib/io/: szin_io.cc, szin_io.h, readszin.cc: Changed
	  szinGaugeInit to initHeader.

2004-02-22 22:07  edwards

	* lib/io/: io.h, io_w.h: Moved wilson specific reader/writers of
	  qprops/ferm to io_w.h.  Added barcomp_io.h

2004-02-22 22:06  edwards

	* lib/actions/gauge/dsdu.cc: THIS IS A TEMPORARY FILE. Just here to
	  get a Wilson gauge action class going.

2004-02-22 22:05  edwards

	* lib/actions/ferm/qprop/: dwf_quarkprop4_w.cc, dwf_quarkprop4_w.h:
	  Pass in j_decay.

2004-02-22 22:04  edwards

	* lib/actions/ferm/fermacts/prec_wilson_fermact_w.h: Changed
	  anisoParamInit to initHeader.

2004-02-22 22:03  edwards

	* lib/Makefile.am: Added barcomp_io routines.

2004-02-22 22:02  edwards

	* tests/: bar3ptfn/bar3ptfn_v6.linux-scalar-intel.dat,
	  bar3ptfn/bar3ptfn_v6.linux-scalar-intel.xml,
	  bar3ptfn/bar3ptfn_v6.xml.ini,
	  hypsmear/hypsmear_v2.linux-scalar-intel.xml,
	  hypsmear/hypsmear_v2.xml.ini,
	  make_source/make_source_v5.linux-scalar-intel.xml,
	  make_source/make_source_v5.xml.ini,
	  propagator/propagator_v4.linux-scalar-intel.xml,
	  propagator/propagator_v4.xml.ini,
	  seqprop/seqprop_v2.linux-scalar-intel.xml,
	  seqprop/seqprop_v2.xml.ini,
	  sink_smearing/sink_smearing_v4.xml.ini,
	  spectrum_w/spectrum_w_v9.linux-scalar-intel.xml.gz,
	  spectrum_w/spectrum_w_v9.xml.ini: Major new test suite for
	  XML/propagator driven input/output model using SciDAC propagator
	  format!!!

2004-02-22 22:01  edwards

	* tests/qqq_w/qqq_w_v2.xml.ini: New input file for XML/propagator
	  input/output model.

2004-02-22 22:00  edwards

	* tests/hypsmear/hypsmear_v1.linux-scalar-intel.xml: Corresponding
	  output for v1 input file.

2004-02-22 21:59  edwards

	* tests/hypsmear/XMLDAT: Should not be here.

2004-02-22 21:52  tag chroma1-4-4

2004-02-22 21:52  edwards

	* NEWS: Info on 1.4.4.

2004-02-22 21:45  edwards

	* tests/bar3ptfn/: bar3ptfn_v5.linux-scalar-intel.dat,
	  bar3ptfn_v5.linux-scalar-intel.xml, bar3ptfn_v5.xml.ini: Fixed
	  input and tests to match chain of tests from
	  make_source/propagator/seqprop.

2004-02-22 21:44  edwards

	* tests/bar3ptfn/bar3ptfn_v5.linux-scalar-intel.xml.gz: Removed.
	  Should have not had the .gz suffix (it is not compressed).

2004-02-22 21:43  edwards

	* tests/: propagator/propagator_v3.linux-scalar-intel.xml,
	  propagator/propagator_v3.xml.ini,
	  seqprop/seqprop_v1.linux-scalar-intel.xml,
	  seqprop/seqprop_v1.xml.ini: Changed precision for tests.

2004-02-22 16:30  edwards

	* tests/make_source/: make_source_v4.linux-scalar-intel.xml,
	  make_source_v4.xml.ini: Fixed input params to match corresponding
	  runs in propagator, seqprop, spectrum.

2004-02-22 16:25  edwards

	* tests/propagator/: propagator_v3.linux-scalar-intel.xml,
	  propagator_v3.xml.ini: Fixed input/test cases to match. Now uses
	  make_source (v3).

2004-02-22 16:24  edwards

	* tests/spectrum_w/: spectrum_w_v8.linux-scalar-intel.xml.gz,
	  spectrum_w_v8.xml.ini: Fixed input to match corresponding
	  make_source (v3) and propagator (v4) run.

2004-02-20 09:02  bjoo

	* docs/chromadoc, lib/Makefile, mainprogs/tests/Makefile.am: Remade
	  Makefiles

2004-02-20 09:00  bjoo

	* tests/t_ov_pbp/DATA, tests/t_ov_pbp/README,
	  mainprogs/tests/t_ov_pbp.cc: Added t_ov_pbp

2004-02-19 17:03  edwards

	* other_libs/intel_sse_wilson_dslash/configure: Induced changes.

2004-02-19 17:01  edwards

	* other_libs/intel_sse_wilson_dslash/lib/Makefile.am: Changed "if
	  BUILD_QDP_PACKERS" around. Now always build packer.c

2004-02-17 12:52  edwards

	* lib/actions/ferm/qprop/staggered_qprop.cc: Bug fix. Use a subset
	  for  tmp[rb[0]] += tmp2 . While the odd-cb is not used, it might
	  have garbage and cause a floating-point fault on some platforms.

2004-02-16 13:21  edwards

	* mainprogs/tests/Makefile.am: Removed t_ldwfdslash.

2004-02-15 20:19  edwards

	* mainprogs/tests/t_conslinop.cc: Fixed conversion of Write() to
	  write().

2004-02-14 13:49  edwards

	* lib/actions/ferm/linop/prec_ovdwf_linop_array_w.cc: Changed
	  applyOddDiag to applyOffDiag.

2004-02-14 13:48  edwards

	* lib/actions/ferm/linop/prec_ovdwf_linop_array_w.h: Fixed name of
	  ApplyDiag to ApplyOffDiag.

2004-02-14 13:48  edwards

	* lib/actions/ferm/linop/linop_w.h: Removed internal dwf routines.
	  Added ovdwf routines.

2004-02-14 13:47  edwards

	* lib/actions/ferm/fermacts/prec_ovdwf_fermact_array_w.cc: Fixed
	  name of class.

2004-02-14 13:46  edwards

	* lib/actions/ferm/fermacts/fermacts_w.h: Added ovdwf files.
	  Removed internal DWF files.

2004-02-14 13:44  edwards

	* lib/Makefile.am: Fixed the makefile after inadvertent "\" caused
	  truncations of lines.  Deprecated the LatticeDWFermion type
	  routines (at least for now the fermacts and linops). Removed the
	  ldwfdslash.  Added the Overlap-DWF fermact and linop. The latter
	  is not functioning correctly yet.

2004-02-14 13:00  edwards

	* chroma-config.in: Comment change.

2004-02-13 16:00  edwards

	* lib/Makefile.am: Added in (but commented out!) initial
	  preconditioned versions of fermact and linop Borici.

2004-02-13 15:57  edwards

	* lib/actions/ferm/linop/: prec_ovdwf_linop_array_w.cc,
	  prec_ovdwf_linop_array_w.h: Initial (not-complete) versions of
	  preconditioned Overlap-DWF (Borici).

2004-02-13 15:56  edwards

	* lib/actions/ferm/fermacts/: prec_ovdwf_fermact_array_w.cc,
	  prec_ovdwf_fermact_array_w.h: Initial (non-functioning) versions
	  of preconditioned Overlap-DWF (Borici).

2004-02-13 11:44  bjoo

	* mainprogs/tests/: t_ovlap_bj.cc, t_ritz_KS.cc: Added a few
	  xml_out.close() s

2004-02-13 10:31  sbasak

	* tests/qqq_w/qqq_w_v1.xml.ini: Example input file to qqq_w

2004-02-13 10:27  sbasak

	* mainprogs/main/: qqq_w.cc, spectrum_w.cc: The p-wave and d-wave
	  part has been stripped off the qqq_w file.

2004-02-13 09:59  bjoo

	* lib/io/szin_io.h: Seed is a QCDSP function, so I disambiguated
	  here with QDP::Seed in szin_io.h -- the problem doesn't come up
	  elsewhere

2004-02-11 07:51  bjoo

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/invert/invmr.cc,
	  lib/actions/ferm/linop/asq_dsl_s.cc,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.cc, lib/io/qprop_io.cc,
	  lib/meas/gfix/coulgauge.cc, lib/meas/gfix/polar_dec.cc,
	  lib/meas/hadron/baryon_w.cc, lib/meas/hadron/hybmeson_w.cc,
	  lib/meas/hadron/loops_w.cc, lib/meas/hadron/mesons_w.cc,
	  lib/meas/hadron/wallpionff_w.cc, lib/meas/smear/ape_smear.cc,
	  lib/update/heatbath/monte.cc, lib/update/molecdyn/hybrid_orig.cc,
	  lib/update/molecdyn/step/camptrj.cc,
	  lib/update/molecdyn/step/hybtrj.cc,
	  lib/update/molecdyn/step/leappmx.cc,
	  lib/update/molecdyn/step/rhybtrj.cc, lib/util/gauge/sun_proj.cc,
	  mainprogs/main/bar3ptfn.cc, mainprogs/main/cfgtransf.cc,
	  mainprogs/main/hypsmear.cc, mainprogs/main/make_source.cc,
	  mainprogs/main/my_qqq.cc, mainprogs/main/propagator.cc,
	  mainprogs/main/seqprop.cc, mainprogs/main/sink_smearing.cc,
	  mainprogs/main/spectrum_w.cc, mainprogs/main/wallformfac.cc,
	  mainprogs/tests/t_ape_smear.cc, mainprogs/tests/t_conslinop.cc,
	  mainprogs/tests/t_disc_loop_s.cc, mainprogs/tests/t_dslashm.cc,
	  mainprogs/tests/t_dwflinop.cc,
	  mainprogs/tests/t_fermion_loop_w.cc,
	  mainprogs/tests/t_follana_io_s.cc,
	  mainprogs/tests/t_follana_pion_s.cc,
	  mainprogs/tests/t_formfac.cc, mainprogs/tests/t_gfix.cc,
	  mainprogs/tests/t_hypsmear.cc, mainprogs/tests/t_io.cc,
	  mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_sse.cc,
	  mainprogs/tests/t_mesons_w.cc, mainprogs/tests/t_mesplq.cc,
	  mainprogs/tests/t_overbu.cc, mainprogs/tests/t_ovlap5d_bj.cc,
	  mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_propagator_fuzz_s.cc,
	  mainprogs/tests/t_propagator_s.cc,
	  mainprogs/tests/t_propagator_w.cc, mainprogs/tests/t_ritz.cc,
	  mainprogs/tests/t_ritz5d_KS.cc, mainprogs/tests/t_ritz_KS.cc,
	  mainprogs/tests/t_spprod.cc, mainprogs/tests/t_wlinvcg.cc,
	  tests/t_lwldslash_sse/input.xml, tests/t_ovlap_bj/DATA,
	  tests/t_ovlap_bj/t_ovlap.xml: Stripped out Read() and Write()

2004-02-10 17:59  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: fixed a comment

2004-02-09 14:34  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: The code now uses the ape
	  fuzzed links to create the fuzzed source. This is only gauge
	  invariant upto 2 significant figures, but this can depend on the
	  parameters of the ape fuzzing of the gauge links.

2004-02-09 14:24  mcneile

	* lib/meas/smear/fuzz_smear.cc: The code is now gaug invariant for
	  source smearing.  I am now using the displacemt routines.  I need
	  to check the code against the okd ukqcd code.

2004-02-09 14:22  mcneile

	* lib/meas/smear/: displacement.cc, displacement.h: I have added an
	  additional case for the fuzzed source/sink code.

2004-02-09 07:44  mcneile

	* mainprogs/tests/Makefile.am: I have added a target for the test
	  program for staggered disconnected loops.

2004-02-09 07:41  mcneile

	* mainprogs/tests/t_disc_loop_s.cc: Checkin for Steve Miller.
	  Example code for staggered disconneced loop files.  Probably
	  needs a clean up at some stage.

2004-02-09 07:39  mcneile

	* lib/util/gauge/stag_phases_s.cc: Checkin for Steve Miller I have
	  restored the staggered phases to the CPS/Glasgow convention.

2004-02-08 09:37  mcneile

	* lib/Makefile.am: I have added the fuzzed source code to this
	  makefile.

2004-02-08 09:35  mcneile

	* lib/meas/smear/: fuzz_smear.cc, fuzz_smear.h: I have added a
	  version for Latticefrmions.

2004-02-08 09:29  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: I have added cals to the
	  fuzzing source routines.  This code is not producing
	  gaugeinvariat results at the moment.

2004-02-08 07:22  mcneile

	* mainprogs/tests/t_propagator_fuzz_s.cc: This is a test routine to
	  check the fuzzed source pion correlators.

2004-02-08 07:21  mcneile

	* mainprogs/tests/Makefile.am: I have added a target to check the
	  fuzzed source staggered code.

2004-02-08 06:33  mcneile

	* lib/Makefile.am: I have added the z2 noise routines

2004-02-08 06:31  mcneile

	* lib/meas/hadron/: z2_src.cc, z2_src.h: These routines compute a
	  z2 complex volume source. These sources can be used to compute
	  disconnected diagrams.  I have written first attempt at a time
	  slice z2 noise source.

2004-02-08 06:23  mcneile

	* lib/meas/hadron/: loops_w.cc, loops_w.h: This is work in pogress
	  code to compute the disconnected loops for Wilson fermions.  It
	  is better to write to write out only the mean and variance,
	  rather than for the individual samples.  I need to understand the
	  conventions, as only the real part of the loop is written out.

2004-02-08 06:17  mcneile

	* mainprogs/tests/t_fermion_loop_w.cc: This is an example code that
	  tests the Wilson fermion loop code.

2004-02-08 06:16  mcneile

	* mainprogs/tests/INPUT_W.xml: I have added a number of samples
	  call.

2004-02-08 06:15  mcneile

	* mainprogs/tests/Makefile.am: I have created an example code for
	  the disconnected diagram code.

2004-02-07 15:47  edwards

	* other_libs/intel_sse_wilson_dslash/src/scalar/:
	  32bit/dslash/sse_su3dslash_w.c, 64bit/dslash/sse_su3dslash_w.c:
	  Added const qualifiers to make_shift_tables call.

2004-02-07 15:45  edwards

	* other_libs/intel_sse_wilson_dslash/src/scalar/shift_tables.c:
	  Added const qualifier to make_shift_tables call.

2004-02-06 23:51  edwards

	* mainprogs/main/propagator.cc: Removed SSE hack - pushed it down
	  into the SSE code where it belongs.

2004-02-06 23:51  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c:
	  Introduced a hack - temporarily never allow freeing of message
	  buffers.

2004-02-06 23:36  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c:
	  Fixed test for x-sublattice oddness.

2004-02-06 17:31  edwards

	* mainprogs/main/propagator.cc: Put in sse hack for the short term.

2004-02-06 17:07  sbasak

	* tests/sink_smearing/sink_smearing_v3.linux-scalar-intel.xml: [no
	  log message]

2004-02-06 17:04  sbasak

	* tests/sink_smearing/sink_smearing_v3.xml.ini: [no log message]

2004-02-06 16:54  sbasak

	* mainprogs/main/: Makefile.am, make_source.cc, sink_smearing.cc:
	  sink mearing code ... version 1.0

2004-02-06 16:22  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Removed temporary in
	  call to  init_sse_su3dslash.

2004-02-06 16:20  edwards

	* other_libs/intel_sse_wilson_dslash/src/:
	  parscalar/32bit/dslash/sse_su3dslash_w.c,
	  parscalar/64bit/dslash/sse_su3dslash_w.c,
	  scalar/32bit/dslash/sse_su3dslash_w.c,
	  scalar/64bit/dslash/sse_su3dslash_w.c: Put const qualifier in
	  call to  init_sse_dslash.

2004-02-06 12:39  edwards

	* mainprogs/main/propagator.cc: Added a flush to xml_out.

2004-02-06 12:34  edwards

	* lib/util/info/printgeom.cc: Print more info

2004-02-06 12:23  edwards

	* lib/util/gauge/eesu3.cc: New version following Morningstar &
	  Peardon.

2004-02-06 11:47  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Ward identity check
	  works. Fixed the local current sign

2004-02-05 23:23  edwards

	* mainprogs/main/qqq_w.cc: Overhauled interface to barcomp_w.cc .
	  Now write directly the data. Now read from DATA an xml input.

2004-02-05 23:22  edwards

	* lib/meas/hadron/: barcomp_w.cc, barcomp_w.h: Overhauled
	  interface. Now return barprop. Let driver code write data how it
	  chooses.

2004-02-05 16:15  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: fixed all bugs. Needs
	  some clean up still

2004-02-05 15:10  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Changed remaining
	  getSubset to getSet

2004-02-05 15:10  edwards

	* lib/actions/ferm/qprop/quarkprop4_w.cc: Moved initializing psi
	  into loop.

2004-02-05 15:09  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Bug fix. Make sure not to
	  reset  iter  in the cb/sign loops.

2004-02-05 15:01  kostas

	* lib/actions/ferm/qprop/prec_fermact_qprop_array.cc: Fixed the
	  chi_tmp bug to all inverters

2004-02-05 14:19  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: few bugs fixed

2004-02-05 01:32  ikuro

	* tests/propagator/sink_smearing_v3.xml.ini: [no log message]

2004-02-04 23:18  edwards

	* mainprogs/main/propagator.cc: Changed call of quarkProp4 to write
	  to xml_out instead of xml buffer.

2004-02-04 15:50  sbasak

	* lib/io/qprop_io.cc: Change in propagator header IO

2004-02-04 14:37  edwards

	* mainprogs/main/make_source.cc: Changed BlkMax and BlkAccu to only
	  use default values.  All other codes have been done this way...

2004-02-04 13:25  dgr

	* mainprogs/main/my_qqq.cc: Hacked version of my_qqq

2004-02-04 12:48  edwards

	* lib/actions/ferm/qprop/prec_fermact_qprop_array.cc: Bug fix -
	  changed chi to chi_tmp in CG call stuff.

2004-02-04 12:44  sbasak

	* tests/make_source/: make_source_v4.linux-scalar-intel.xml,
	  make_source_v4.xml.ini: make_source input Version 4: read in
	  smearing parameters.

2004-02-04 12:41  sbasak

	* mainprogs/main/make_source.cc: IO_version number changed from 3
	  to 4

2004-02-04 12:01  edwards

	* mainprogs/main/: make_source.cc, propagator.cc, seqprop.cc:
	  Changed getSubset() to the now correct getSet().

2004-02-04 11:59  sbasak

	* mainprogs/main/make_source.cc: APE smearing and Displacement
	  operation added. The smearing parameters are read from DATA file.

2004-02-04 11:57  sbasak

	* lib/io/: qprop_io.cc, qprop_io.h: New header entries concerning
	  displacement length and direction

2004-02-03 17:39  edwards

	* lib/meas/smear/stout_smear.cc: First pass at a stout_smear
	  routine.

2004-02-03 16:51  edwards

	* lib/meas/hadron/hybmeson_w.h: Include file for hybmeson - fixed
	  t0 to t_source.

2004-02-03 16:50  edwards

	* lib/meas/hadron/hybmeson_w.cc: Now compiles, but not tested.

2004-02-03 16:13  edwards

	* lib/meas/hadron/: hybmeson_w.cc, hybmeson_w.h: Initial versions.

2004-02-03 16:13  edwards

	* lib/meas/hadron/mesons_w.h: Added brief at top.

2004-02-03 15:58  edwards

	* lib/Makefile.am: Added hybmeson.

2004-02-03 15:47  edwards

	* lib/meas/hadron/mesons_w.cc: Small code tweaks.

2004-02-03 15:05  edwards

	* mainprogs/main/spectrum_w.cc: Removed passing j_decay into
	  curcor2

2004-02-03 15:04  edwards

	* lib/: actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  meas/hadron/curcor2_w.cc, meas/hadron/curcor2_w.h,
	  meas/hadron/wallpionff_w.cc: Changed phases.getSubset() to
	  phases.getSet(). Removed passing j_decay into curcor2

2004-02-03 15:04  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added sft for LatticeReal.
	  Changed  getSubset() to the more accurate getSet().

2004-01-31 18:22  edwards

	* mainprogs/main/: bar3ptfn.cc, cfgtransf.cc, hypsmear.cc,
	  make_source.cc, propagator.cc, seqprop.cc, spectrum_w.cc,
	  wallformfac.cc: Added proginfo call.

2004-01-31 17:46  edwards

	* tests/spectrum_w/: spectrum_w_v8.linux-scalar-intel.xml.gz,
	  spectrum_w_v8.xml.ini: Fixed tests.

2004-01-31 17:43  edwards

	* mainprogs/main/spectrum_w.cc: Put in tests of array sizes.

2004-01-30 16:35  kostas

	* lib/actions/ferm/qprop/: dwf_quarkprop4_w.cc, dwf_quarkprop4_w.h:
	  added uprec_dwf support

2004-01-30 16:35  kostas

	* mainprogs/main/propagator.cc: added calls to calculate mres for
	  dwf

2004-01-30 15:21  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.h: fixed the prototype

2004-01-29 23:22  edwards

	* lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/linop/prec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/prec_wilson_linop_w.h,
	  mainprogs/main/propagator.cc: Added anisotropy support.

2004-01-29 23:21  edwards

	* lib/io/: param_io.cc, param_io.h: Added real support for
	  AnisoParam_t	reading/initializing.

2004-01-29 23:21  edwards

	* tests/propagator/: propagator_v3.linux-scalar-intel.xml,
	  propagator_v3.xml.ini: Anisotropy tests included.

2004-01-29 20:39  edwards

	* lib/actions/ferm/: ferm.h, dslash/dslash.h, dslash/dslashm_w.cc,
	  dslash/dslashm_w.h: Removed all references and uses of the dslash
	  directory and files!

2004-01-29 20:38  edwards

	* lib/Makefile.am: Removed references to the
	  lib/actions/ferm/dslash  directory and files!!!

2004-01-29 15:59  edwards

	* lib/Makefile.am: Argh, fixed yet info include.

2004-01-29 15:56  edwards

	* lib/Makefile.am: Removed old VPATH of info.

2004-01-29 15:54  edwards

	* lib/Makefile.am: Added wallpionff_w.{h,cc} back in, yet again,
	  into the Makefile.am .

2004-01-29 15:46  edwards

	* lib/util/info/: printgeom.cc, printgeom.h, proginfo.cc,
	  proginfo.h: Changed include paths to	util/info .

2004-01-29 15:45  edwards

	* lib/Makefile.am: Small fixes. Removed old geom stuff.

2004-01-29 15:39  edwards

	* lib/Makefile.am: Removed some obsolete VPATHs. Added info files.

2004-01-29 15:38  edwards

	* lib/util/util.h: Added info.h

2004-01-29 15:38  edwards

	* lib/util/info/: info.h, printgeom.cc, printgeom.h, proginfo.cc,
	  proginfo.h: Initial versions of info files.

2004-01-29 15:14  bjoo

	* lib/fermact.h: Made quarkMass routine pure virtual. Seemingly
	  this stopped compilation on the IBM before I did this

2004-01-29 14:48  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: added the t_src as
	  input parameter

2004-01-29 14:04  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Removed some debugging output

2004-01-29 12:45  edwards

	* tests/propagator/propagator_v2.dwf.xml.ini: Input file for DWF.

2004-01-29 12:37  edwards

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Implemented some flop
	  optimizations.

2004-01-29 12:16  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h: Fixed
	  format of output.

2004-01-29 12:09  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h: Added IO
	  printouts to constructor.

2004-01-29 11:56  edwards

	* mainprogs/main/make_source.cc: Changed default output XML file
	  name to XMLDAT.

2004-01-29 11:49  edwards

	* tests/bar3ptfn/: bar3ptfn_v5.linux-scalar-intel.dat,
	  bar3ptfn_v5.linux-scalar-intel.xml.gz, bar3ptfn_v5.xml.ini: New
	  version 5 output.

2004-01-29 11:44  edwards

	* mainprogs/main/spectrum_w.cc: Removed reading of Nd, Nc, and
	  numKappa. Changed from Kappa to Mass! Can also read Kappa for
	  back compatibility.

2004-01-29 11:44  edwards

	* tests/spectrum_w/: spectrum_w_v8.linux-scalar-intel.xml.gz,
	  spectrum_w_v8.xml.ini: New version 8 input and output format.

2004-01-29 11:18  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Removed the if 1
	  directive

2004-01-29 11:17  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Fixed an ax-ps
	  correlation function bug

2004-01-29 10:57  edwards

	* mainprogs/main/bar3ptfn.cc: Changed Kappa to use Mass. Now can
	  also input Kappa. Changed output format since now only Mass is
	  written in the dat files.

2004-01-29 10:50  bjoo

	* mainprogs/tests/t_propagator_s.cc: Patched minor typos in
	  t_propagator_s.cc

2004-01-29 10:50  bjoo

	* tests/t_asqtad_prop/: DATA, XMLDAT.reference: Updated DATA file
	  and reference XMLDAT output

2004-01-29 10:19  bjoo

	* mainprogs/tests/t_propagator_s.cc: Fixed a , into a . to make the
	  thing compile

2004-01-29 09:59  kostas

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.cc: Fixed the bugs. Code
	  compiles now

2004-01-28 12:29  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/scalar/64bit/dslash/sse_su3dslash_w.c:
	  Commented out printfs.

2004-01-28 12:00  bjoo

	* tests/t_ritz/: t_ritz5d_KS.xml.in, t_ritz5d_KS.xml.out: Test
	  output for 5D ritz

2004-01-28 11:04  bjoo

	* lib/: Makefile.am,
	  actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  meas/eig/eig.h, meas/eig/eig_spec.cc, meas/eig/eig_spec_array.cc:
	  Committing new makefiles etc

2004-01-28 11:03  bjoo

	* tests/t_ritz/: README, t_ritz.xml.in, t_ritz.xml.out,
	  t_ritz5d_KS.xml.in, t_ritz_KS.xml.in, t_ritz_KS.xml.out: Test
	  input and output files for Ritz

2004-01-28 10:57  bjoo

	* mainprogs/tests/t_ritz_KS.cc: Ooops

2004-01-28 10:48  bjoo

	* mainprogs/tests/: Makefile.am, t_ritz.cc, t_ritz5d_KS.cc,
	  t_ritz_KS.cc: Ritz test programs

2004-01-28 10:34  bjoo

	* lib/meas/eig/: eig_spec.cc, eig_spec.h, eig_spec_array.cc,
	  eig_spec_array.h, eig_spec_bj_w.cc, eig_spec_bj_w.h,
	  eig_spec_w.cc, ritz.cc, ritz_array.cc, ritz_array.h,
	  sn_jacob_array.cc, sn_jacob_array.h: Added lots of eigenstuff

2004-01-27 23:43  tag chroma1-4-3

2004-01-27 23:43  edwards

	* NEWS: Info on 1.4.3 .

2004-01-27 23:37  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c:
	  Bug fix.

2004-01-27 23:24  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c:
	  Changed floats to doubles in init routine.

2004-01-27 23:21  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c:
	  Replaced initialization routine.

2004-01-27 22:47  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/scalar/64bit/dslash/sse_su3dslash_w.c:
	  Fixed pointer conversion.

2004-01-27 19:05  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/shift_tables.c:
	  Commented out fclose.

2004-01-27 17:38  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c:
	  Changed QDP_error_exit to QMP_error_exit.

2004-01-27 17:33  edwards

	* other_libs/intel_sse_wilson_dslash/src/:
	  parscalar/shift_tables.c, scalar/shift_tables.c,
	  scalar/32bit/dslash/sse_su3dslash_w.c: Commented out debugging
	  code.

2004-01-27 17:28  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Added xml output.

2004-01-27 17:25  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Changed
	  init_sse_su3dslash usage. Also, call of sse_su3dslash_wilson
	  changed substantially. Now, must pass a **FULL** lattice fermion.

2004-01-27 17:22  edwards

	* NEWS: Info on 1.4.2.

2004-01-27 17:20  edwards

	* other_libs/intel_sse_wilson_dslash/NEWS: News on 1.2.0

2004-01-27 17:17  edwards

	* other_libs/intel_sse_wilson_dslash/NEWS: News on 1.1.2

2004-01-27 17:15  edwards

	* other_libs/intel_sse_wilson_dslash/configure: Induced changes.

2004-01-27 17:13  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Changed to
	  version 1.2

2004-01-27 17:12  edwards

	* other_libs/intel_sse_wilson_dslash/include/sse_align.h: Changed
	  default alignment for now to 128 bits for all archs.

2004-01-27 17:11  edwards

	* other_libs/intel_sse_wilson_dslash/configure.ac: Rearranged
	  packer setup to now be in the parallel-arch section.

2004-01-27 17:10  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/:
	  shift_tables.c, 32bit/dslash/sse_su3dslash_w.c,
	  64bit/dslash/sse_su3dslash_w.c: Major overhaul of shift tables -
	  complete rewrite.  Important change on sse_su3dslash_wilson - now
	  all fermion fields must be on the **FULL** lattice.

2004-01-27 17:10  edwards

	* other_libs/intel_sse_wilson_dslash/src/parscalar/packer/:
	  nopad/qdp_packer.cc, p4_pad/qdp_packer.cc: Small code cleanups.

2004-01-27 17:07  edwards

	* other_libs/intel_sse_wilson_dslash/src/scalar/: shift_tables.c,
	  32bit/dslash/sse_su3dslash_w.c, 64bit/dslash/sse_su3dslash_w.c:
	  Major overhaul of shift tables (soffsets) and there use.  Now,
	  all input fields must be on the **FULL** lattice.

2004-01-27 17:03  edwards

	* other_libs/intel_sse_wilson_dslash/src/scalar/packer/:
	  nopad/qdp_packer.cc, p4_pad/qdp_packer.cc: Small cleanups.

2004-01-27 16:06  ikuro

	* lib/meas/: hadron/D_j_w.cc, sources/p_src_w.cc: [no log message]

2004-01-27 16:03  ikuro

	* lib/meas/smear/displacement.cc: [no log message]

2004-01-27 06:50  bjoo

	* lib/meas/eig/: eig_spec_bj_w.cc, eig_spec_bj_w.h, gramschm.cc,
	  gramschm_array.cc, gramschm_array.h, ritz.cc, ritz.h: Added array
	  version of gramschm

2004-01-25 08:26  tag chroma1-4-2

2004-01-25 08:26  mcneile

	* mainprogs/tests/Makefile.am: I have added compilation lines for
	  the wilson propagator generating file.

2004-01-25 08:17  mcneile

	* mainprogs/tests/INPUT_W.xml: This is the input file for the meson
	  spectroscopy code for Wilson fermions. This file may need to be
	  moved to a different directory

2004-01-25 08:12  mcneile

	* mainprogs/tests/t_propagator_w.cc: This is a test program to
	  generate meson correlators for Wilson fermions. This program is
	  required for both SU(3) and SU(4).  This program produces gauge
	  invariant results for SU(4), but I don't fully understand the
	  conventions for quark masses.

2004-01-25 07:58  mcneile

	* docs/faq.txt: This is the start of a simple FAQ for chroma.

2004-01-23 17:18  edwards

	* lib/meas/smear/displacement.cc: Major bug fix. The previous
	  version never modified the output field! Also, the backward
	  direction part was broken.

2004-01-23 17:17  edwards

	* lib/meas/smear/displacement.h: Fixed doxygen comments.

2004-01-23 15:38  edwards

	* lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h: Added
	  gamma5HermLinOp.

2004-01-23 12:59  edwards

	* lib/fermact.h: Added a comment.

2004-01-23 12:59  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_array_w.h,
	  prec_dwf_fermact_base_w.h, unprec_dwf_fermact_array_w.h,
	  unprec_dwf_fermact_base_array_w.h, unprec_dwf_fermact_base_w.h:
	  Added default gammaHermLinOp routines.

2004-01-23 05:35  bjoo

	* lib/: Makefile.am, fermact.h,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  actions/ferm/fermacts/prec_clover_fermact_w.h,
	  actions/ferm/fermacts/prec_dwf_fermact_base_w.h,
	  actions/ferm/fermacts/prec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  actions/ferm/fermacts/unprec_dwf_fermact_w.h,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  actions/ferm/fermacts/unprec_wilson_fermact_w.h: Added
	  gamma5HermLinOp to some fermion actions

2004-01-22 17:52  edwards

	* lib/util/gauge/: eesu3.cc, expsu3.cc: First converted versions.

2004-01-22 17:51  edwards

	* lib/update/heatbath/mciter.cc: More fixes.

2004-01-22 17:51  edwards

	* lib/meas/hadron/wallpionff_w.cc: Changed output to real numbers.

2004-01-22 17:49  edwards

	* lib/Makefile.am: Added wallpionff_w.cc

2004-01-22 17:49  edwards

	* docs/chromadoc: Removed ../include from doxy path

2004-01-21 10:34  bjoo

	* lib/meas/eig/eig_spec_bj_w.cc, lib/meas/eig/eig_spec_bj_w.h,
	  lib/meas/eig/ritz.cc, lib/meas/eig/ritz.h,
	  mainprogs/tests/t_ritz_KS.cc: Added zero mode cuts..

2004-01-21 08:41  mcneile

	* lib/meas/hadron/mesphas_s.cc: I am checking this code in for
	  Steve Miller.  The mesphas_s routine just has a bug in the
	  pseudo-vector phases corrected.

2004-01-21 08:37  mcneile

	* lib/meas/hadron/: walfil_s.cc, walfil_s.h: I am checking in these
	  files at the request of Steve Miller.  The code now computes a
	  generalized wall source with the 1's arounf the local hypercube.

2004-01-21 08:29  mcneile

	* mainprogs/tests/t_propagator_s.cc: I am adding this file at the
	  request of Steve Miller.  This test file is cose to how how Steve
	  plans to run production code.

2004-01-20 15:51  bjoo

	* lib/Makefile.am, lib/fermact.h,
	  lib/actions/ferm/linop/lgherm_w.h, lib/meas/eig/eig_spec_bj_w.cc,
	  lib/meas/eig/eig_spec_bj_w.h, lib/meas/eig/ritz.cc,
	  lib/meas/eig/sn_jacob.cc, mainprogs/tests/t_ritz_KS.cc: fix HH to
	  H now works, barring validity marking

2004-01-20 08:45  mcneile

	* lib/meas/smear/: fuzz_smear.cc, fuzz_smear.h: This is my first
	  attempted at writing some code to fuzz at the source and sink.

2004-01-20 05:13  bjoo

	* lib/actions/ferm/linop/: linop_w.h, lopscl.h: added lgherm_w.h to
	  linop_w.h, removed unused temporary in lopscl.h

2004-01-20 05:11  bjoo

	* lib/actions/ferm/linop/lgherm_w.h: New lgherm

2004-01-19 12:58  bjoo

	* lib/meas/eig/eig_spec_bj_w.cc, lib/meas/eig/eig_spec_bj_w.h,
	  lib/meas/eig/ritz.cc, lib/meas/eig/ritz.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_ritz_KS.cc: Added
	  adaptive CG lengths (a la Kalk. Sim)

2004-01-16 12:24  bjoo

	* mainprogs/tests/t_ritz.cc: minor edits

2004-01-16 11:51  bjoo

	* lib/meas/eig/: eig_spec_bj_w.cc, eig_spec_bj_w.h, gramschm.h,
	  ritz.h: Woops. Didnt check these in before. Thanks Kostas

2004-01-16 10:41  bjoo

	* lib/meas/eig/: eig_spec_bj_w.cc, eig_spec_bj_w.h: Now compiles
	  sandpit

2004-01-16 10:38  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/meas/eig/eig_spec_bj_w.cc, lib/meas/eig/eig_spec_bj_w.h,
	  lib/meas/eig/sn_jacob.cc, lib/meas/eig/sn_jacob.h: Added my own
	  placeholder eig_spec_bj_w as an eigenspectrum routine sandpit

2004-01-16 10:24  kostas

	* aclocal.m4, configure, lib/Makefile.am, lib/meas/eig/eig.h:
	  Modified makefiles and eig.h in order to solve the probelm with
	  the missing ritz.h and gramshm.h

2004-01-16 10:05  kostas

	* mainprogs/main/spectrum_w.cc: fixed the second occurrence of the
	  shell sink bug

2004-01-16 10:01  kostas

	* mainprogs/main/spectrum_w.cc: Corrected the shell sink bug

2004-01-16 09:16  bjoo

	* lib/meas/eig/eig.h, lib/meas/eig/eig_w.h,
	  lib/meas/eig/gramschm.cc, lib/meas/eig/ritz.cc,
	  mainprogs/tests/t_ritz.cc: T_ritz now finds low e-values/vectors

2004-01-16 07:28  bjoo

	* mainprogs/tests/: Makefile.am, t_ritz.cc: Added initial
	  placeholder for t_ritz

2004-01-16 07:26  bjoo

	* lib/: Makefile.am, meas/eig/gramschm.cc, meas/eig/ritz.cc:
	  Ritz.cc now compiles. I removed wallpion_w.cc from Makefile.am
	  because it is broken

2004-01-14 17:24  kostas

	* mainprogs/main/: propagator.cc, spectrum_w.cc: added reading
	  capability for NERSC confs

2004-01-14 16:44  edwards

	* tests/wallpionff/wallformfac_v1.xml.ini: New file names required.

2004-01-14 16:42  edwards

	* mainprogs/main/wallformfac.cc: Now read in forward and backward
	  prop names.

2004-01-14 16:41  edwards

	* lib/meas/hadron/wallnuclff_w.cc: More changes.

2004-01-14 16:39  edwards

	* lib/Makefile.am: Put back in wallpionff_w.cc

2004-01-14 12:00  bjoo

	* mainprogs/tests/t_ovlap_bj.cc: Changed Circle Norm, to GWR Norm
	  (massive version)

2004-01-14 07:45  bjoo

	* lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/linop/linop_w.h, mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_ovlap5d_bj.cc, mainprogs/tests/t_ovlap_bj.cc,
	  tests/t_ovlap5d_bj/DATA.ini,
	  tests/t_ovlap5d_bj/t_ovlap5d.xml.out: Checked 4D - 5D ops for
	  internal consistency. 5D op still dodgy when eigenvalue
	  projection is switched on

2004-01-13 12:52  bjoo

	* lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  mainprogs/tests/t_ovlap5d_bj.cc: 5D op is OK-ish

2004-01-13 09:43  bjoo

	* mainprogs/tests/t_ovlap5d_bj.cc: Checked that 5D op works. Now I
	  need to implement qprop

2004-01-13 08:14  bjoo

	* lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/actions/ferm/linop/zolotarev5d_linop_array_w.cc,
	  mainprogs/tests/Makefile.am: zolotarev5d_fermact init now gives
	  same coeffs as SZIN

2004-01-13 05:00  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/zolotarev5d_fermact_array_w.h,
	  lib/actions/ferm/linop/zolotarev5d_linop_array_w.cc,
	  lib/actions/ferm/linop/zolotarev5d_linop_array_w.h,
	  mainprogs/tests/t_ovlap_bj.cc: Added 5D Zolotarev Stuff. Comented
	  out wallpionff_w.cc as it seems not to compile just now

2004-01-13 00:49  edwards

	* mainprogs/main/cfgtransf.cc: Added gauge fixing.

2004-01-13 00:12  edwards

	* tests/wallpionff/wallformfac_v1.xml.ini: Changed wallformfac
	  group name.

2004-01-13 00:10  edwards

	* mainprogs/main/wallformfac.cc: Changed name of xml input group.

2004-01-12 23:32  edwards

	* mainprogs/main/wallformfac.cc: Now compiles.

2004-01-12 23:31  edwards

	* tests/wallpionff/wallformfac_v1.xml.ini: Wall-sink pion
	  form-factor test code.

2004-01-12 23:02  edwards

	* mainprogs/main/wallformfac.cc: Under construction.

2004-01-12 23:01  edwards

	* mainprogs/main/make_source.cc: Fixed up parameter reads. It no
	  longer supports old versions.  This forces people to use nice
	  names instead of magic numbers.

2004-01-12 22:59  edwards

	* lib/meas/sources/: sources.h, srcsnktype.h, wavetype.h: Moved
	  from chromainc the SourceType & SinkType enum. Also a
	  wavefunction type.

2004-01-12 22:58  edwards

	* lib/meas/smear/: sink_smear2_w.h, smear.h, wvfkind.h: Moved off
	  WvfKind to its own file - wvfkind.h . Now included in smear.h

2004-01-12 22:57  edwards

	* lib/meas/hadron/: hadron_w.h, wallpionff_w.cc, wallpionff_w.h:
	  Added wallpionff

2004-01-12 22:57  edwards

	* lib/io/: param_io.cc, param_io.h: Added read support for
	  SrcSnkType, WaveStateType.

2004-01-12 22:56  edwards

	* lib/chromainc.h: Moved out Sources and Sinks enums to
	  meas/source/srcsnktype.h

2004-01-12 22:56  edwards

	* lib/lib.h: Added include files in the lib dir.

2004-01-12 22:54  edwards

	* lib/Makefile.am: Added wvftype.h, wavetype.h and
	  wallpionff_w.{h,cc}.

2004-01-12 22:45  edwards

	* mainprogs/main/Makefile.am: Added wallformfac

2004-01-12 22:45  edwards

	* tests/make_source/: make_source_v3.linux-scalar-intel.xml,
	  make_source_v3.xml.ini: New format.

2004-01-12 14:24  bjoo

	* lib/actions/ferm/fermacts/: zolotarev5d_fermact_array_w.cc,
	  zolotarev5d_fermact_array_w.h: These are just copies is of the
	  unprec_ovext_fermact_array_w stuff at the moment

2004-01-12 13:09  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/qprop/qprop.h, lib/actions/ferm/qprop/qprop_w.h,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_multi_w.h,
	  mainprogs/tests/t_ovlap_bj.cc: Multi Mass quark prop now works

2004-01-12 10:59  bjoo

	* lib/actions/ferm/linop/lopscl.h: lopscl.h

2004-01-12 09:54  bjoo

	* lib/: Makefile.am,
	  actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  actions/ferm/fermacts/overlap_fermact_base_w.h,
	  actions/ferm/invert/minvcg.cc, actions/ferm/linop/linop.h: Added
	  multi mass qprop to overlap_fermact_base

2004-01-11 23:54  edwards

	* lib/actions/ferm/linop/unprec_parwilson_linop_w.cc: Small bug
	  fixes. Now compiles.

2004-01-11 23:45  edwards

	* lib/: Makefile.am, actions/ferm/fermacts/fermacts_w.h,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.cc,
	  actions/ferm/fermacts/unprec_parwilson_fermact_w.h,
	  actions/ferm/linop/linop_w.h,
	  actions/ferm/linop/unprec_parwilson_linop_w.cc,
	  actions/ferm/linop/unprec_parwilson_linop_w.h: Added unprec.
	  parity breaking Wilson.

2004-01-11 23:32  edwards

	* lib/actions/ferm/: fermacts/prec_parwilson_fermact_w.cc,
	  fermacts/prec_parwilson_fermact_w.h,
	  linop/prec_parwilson_linop_w.cc, linop/prec_parwilson_linop_w.h:
	  Parity breaking Wilson action.

2004-01-11 23:21  edwards

	* lib/Makefile.am: Added prec. parwilson fermact and linop

2004-01-11 22:08  edwards

	* lib/meas/hadron/: wallnuclff_w.cc, wallpionff_w.cc: First version
	  of wall-sink formfactors.

2004-01-11 22:07  edwards

	* mainprogs/main/wallformfac.cc: First crack at a driver for
	  wall-sink-method formfactors.

2004-01-10 00:52  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Code cleanup of case 0.

2004-01-10 00:40  edwards

	* lib/meas/hadron/barseqsrc_w.cc: Fixed trace's to be traceSpin.

2004-01-08 23:26  edwards

	* aclocal.m4, configure: Induced changes.

2004-01-08 23:26  edwards

	* lib/io/param_io.cc: Bug fix in kappaToMass.

2004-01-08 23:25  edwards

	* mainprogs/main/: propagator.cc, seqprop.cc: Added sanity checks.

2004-01-08 23:23  edwards

	* tests/: propagator/propagator_v2.linux-scalar-intel.xml,
	  seqprop/seqprop_v1.linux-scalar-intel.xml,
	  seqprop/seqprop_v1.xml.ini: Updated to new program output.

2004-01-08 22:55  edwards

	* tests/propagator/propagator_v2.linux-scalar-intel.xml: Updated
	  output. Now uses source_0 from make_source.

2004-01-08 22:54  edwards

	* tests/propagator/propagator_v2.xml.ini: Changed to now read from
	  source.

2004-01-08 22:54  edwards

	* tests/make_source/make_source_v2.linux-scalar-intel.xml: Updated.

2004-01-08 22:53  edwards

	* mainprogs/main/propagator.cc: Added norm2 of source_prop for
	  sanity check. Changed to now read quark_prop_source.

2004-01-08 22:52  edwards

	* mainprogs/main/make_source.cc: Added norm2 of source for sanity
	  check. Changed kappa_fake -> pi just to make something
	  nontrivial.

2004-01-08 22:35  edwards

	* mainprogs/main/make_source.cc: Cleaned up.

2004-01-08 22:34  edwards

	* tests/make_source/: make_source_v2.linux-scalar-intel.xml,
	  make_source_v2.xml.ini: Modified to current version of
	  make_source.cc

2004-01-08 22:02  edwards

	* lib/meas/smear/: laplacian.cc, laplacian.h: Minor tweak of
	  doxygen comments.

2004-01-08 22:01  edwards

	* lib/meas/smear/: laplacian.cc, laplacian.h: Added more doxygen
	  comments.

2004-01-08 21:47  edwards

	* lib/: io/param_io.cc, meas/smear/sink_smear2_w.h: Added more
	  WvfKind types and support.

2004-01-08 15:59  kostas

	* mainprogs/main/propagator.cc: Added Overlap DWF

2004-01-08 12:11  bjoo

	* lib/Makefile.am, mainprogs/tests/t_ovlap_bj.cc: MInvCG

2004-01-08 12:11  bjoo

	* lib/actions/ferm/invert/: invert.h, minvcg.cc, minvcg.h: MInvCG
	  now works

2004-01-08 06:53  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/fermacts/ev_state.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/overlap_state.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  lib/actions/ferm/qprop/zolotarev4d_qprop.cc,
	  mainprogs/tests/t_ovlap_bj.cc: ZOlotarev tidyup

2004-01-08 05:42  bjoo

	* lib/actions/ferm/fermacts/: overlap_state.h,
	  zolotarev4d_fermact_bj_w.cc, zolotarev4d_fermact_bj_w.h,
	  zolotarev4d_fermact_w.cc, zolotarev4d_fermact_w.h,
	  zolotarev_state.h: Moved zolotarev_state.h -> overlap_state.h
	  zolotarev4d_fermact_bj_w.* -> zolotarev4d_fermact_w.*

2004-01-07 23:16  edwards

	* lib/actions/ferm/fermacts/zolotarev_coeffs.cc: Changed to
	  absolute path for zolotarev.h

2004-01-07 22:56  edwards

	* aclocal.m4, configure: Induced changes.

2004-01-07 22:55  edwards

	* Makefile.am: Added bin_SCRIPTS

2004-01-07 22:49  edwards

	* lib/io/: readszin.cc, writeszin.cc: Removed usage of primitives.h

2004-01-07 22:38  tag intel_sse_dslash1-1-2

2004-01-07 22:38  edwards

	* aclocal.m4, other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure, configure: Induced
	  changes.

2004-01-07 22:34  edwards

	* configure: Induced changes.

2004-01-07 22:33  edwards

	* configure.ac: Added configure of  chroma-config

2004-01-07 22:33  edwards

	* chroma-config.in: First version.

2004-01-07 22:21  edwards

	* configure: Induced changes.

2004-01-07 22:17  edwards

	* configure.ac: Changed to version 1.4 .

2004-01-07 22:16  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2004-01-07 22:14  edwards

	* Makefile.am: Removed configure of include/Makefile.am

2004-01-07 22:13  edwards

	* scripts/build_include_headers.pl: Script for building
	  nobase_include_HEADERS line in chroma/lib/Makefile.am

2004-01-07 22:13  edwards

	* include/: chroma.h, chroma_scalarsite_defs.h,
	  chroma_scalarsite_dwdefs.h, chromabase.h, chromainc.h,
	  common_declarations.h, common_declarations.h.old, fermact.h,
	  fermbc.h, gaugeact.h, gaugebc.h, geom.h, handle.h, invtype.h,
	  linearop.h, primitives.h, state.h, zolotarev.h: Moved to
	  chroma/lib . Actually, just copied an reinserted.

2004-01-07 22:12  edwards

	* include/Makefile.am: No longer used. Now in
	  chroma/lib/Makefile.am

2004-01-07 22:11  edwards

	* lib/: chroma.h, chroma_scalarsite_defs.h,
	  chroma_scalarsite_dwdefs.h, chromabase.h, chromainc.h,
	  common_declarations.h, fermact.h, fermbc.h, gaugeact.h,
	  gaugebc.h, geom.h, handle.h, invtype.h, linearop.h, primitives.h,
	  state.h: Moved over from include dir.

2004-01-07 22:11  edwards

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc: Changed
	  zolotarev.h include path.

2004-01-07 22:10  edwards

	* aclocal.m4: Induced changes.

2004-01-07 22:09  edwards

	* lib/Makefile.am: Major change. Now take over include files and
	  installation.

2004-01-07 22:09  edwards

	* configure.ac: Removed configure of  chroma/include/Makefile

2004-01-07 21:14  edwards

	* lib/actions/ferm/fermacts/zolotarev.h: Moved to here from include
	  dir.

2004-01-07 20:35  tag chroma1-4-1

2004-01-07 20:35  edwards

	* NEWS: Info on 1.4.1

2004-01-07 17:00  edwards

	* tests/propagator/propagator_v2.linux-scalar-intel.xml: Updated.

2004-01-07 16:59  edwards

	* mainprogs/main/propagator.cc: More cleanups.

2004-01-07 16:58  edwards

	* lib/io/: param_io.cc, param_io.h: Added massToKappa functions.

2004-01-07 16:58  edwards

	* tests/propagator/: prop_dwf_v2.xml.ini, propagator_v2.xml.ini:
	  Changed output file name

2004-01-07 16:57  edwards

	* tests/seqprop/seqprop_v1.linux-scalar-intel.xml,
	  tests/seqprop/seqprop_v1.xml.ini, mainprogs/main/seqprop.cc:
	  First running version.

2004-01-07 16:01  edwards

	* lib/io/param_io.cc: Added kappaToMass.

2004-01-07 16:00  edwards

	* lib/io/param_io.h: Added prototypes for kappaToMass.

2004-01-07 15:54  edwards

	* lib/update/molecdyn/hamilton.h: Added a "newPsi" function.

2004-01-07 08:50  bjoo

	* lib/actions/ferm/fermacts/fermacts.h,
	  lib/actions/ferm/fermacts/fermacts_s.h,
	  lib/actions/ferm/fermacts/fermacts_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/linop/asq_dsl_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/asqtad_mdagm_s.cc,
	  lib/actions/ferm/linop/asqtad_mdagm_s.h,
	  lib/actions/ferm/linop/linop.h, lib/actions/ferm/linop/linop_s.h,
	  lib/actions/ferm/linop/linop_w.h,
	  lib/actions/ferm/linop/lmdagm.h,
	  lib/actions/ferm/linop/lmdagm_w.h,
	  lib/actions/ferm/linop/zolotarev4d_linop_w.cc,
	  lib/actions/ferm/linop/zolotarev4d_linop_w.h, lib/io/io.h,
	  lib/io/io_s.h, lib/io/io_w.h, lib/meas/meas.h,
	  lib/meas/eig/eig.h, lib/meas/eig/eig_s.h,
	  lib/meas/hadron/hadron.h, lib/meas/hadron/hadron_s.h,
	  lib/meas/hadron/hadron_w.h, lib/meas/sources/sources.h,
	  lib/meas/sources/sources_s.h, lib/util/gauge/gauge.h,
	  lib/util/gauge/gauge_s.h, mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_propagator_s.cc: added _w.h and _s.h header
	  files in lots of directories, removed zolotarev4d_fermact_w soon
	  to be replaced with zolotarev4d_fermact_bj etc

2004-01-07 07:49  bjoo

	* aclocal.m4, configure, configure.ac: Now define
	  CHROMA_BUILD_WILSON or CHROMA_BUILD_STAGGERED depending on
	  fermion type being built. This can be used by .h files to include
	  the right sub .h files

2004-01-07 07:10  bjoo

	* tests/t_ovlap_bj/: DATA, t_ovlap.xml: Freshened sample input and
	  output files.

2004-01-07 07:09  bjoo

	* mainprogs/tests/t_ovlap_bj.cc, tests/t_ovlap_bj/DATA: Zolotarev4D
	  now reproduces SZIN result to a relative accuracy of about
	  10^{-4} to 10^{-5}

2004-01-06 23:45  edwards

	* tests/seqprop/seqprop_v1.xml.ini: First version.

2004-01-06 23:44  edwards

	* mainprogs/main/: propagator.cc, seqprop.cc: Moved Kappa to Mass
	  to param_io.cc

2004-01-06 23:15  edwards

	* lib/io/param_io.cc, lib/io/param_io.h,
	  mainprogs/main/propagator.cc: Changed conventions.

2004-01-06 23:14  edwards

	* aclocal.m4: Induced changes.

2004-01-06 23:14  edwards

	* tests/propagator/: prop_dwf_v2.linux-scalar-intel.xml,
	  prop_dwf_v2.xml.ini, propagator_v2.linux-scalar-intel.xml,
	  propagator_v2.xml.ini: Test files for propagator code.

2004-01-06 22:02  edwards

	* lib/actions/ferm/qprop/dwf_quarkprop4_w.h: Include file

2004-01-06 15:17  edwards

	* mainprogs/main/propagator.cc: Better fermion support.

2004-01-06 15:16  edwards

	* lib/actions/ferm/qprop/: dwf_quarkprop4_w.cc, qprop.h,
	  quarkprop4_w.cc, quarkprop4_w.h: Incorporating dwf_quarkprop

2004-01-06 15:16  edwards

	* lib/io/: param_io.cc, param_io.h: Added more fermact stuff.  S

2004-01-06 11:05  edwards

	* lib/actions/ferm/qprop/overlap_fermact_qprop_w.cc: Default
	  template version of the overlap operator qprop.

2004-01-06 10:35  bjoo

	* lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/qprop/zolotarev4d_qprop.cc,
	  mainprogs/tests/t_ovlap_bj.cc: Qprop for Zolotarev now inverts.
	  Pion still to check

2004-01-06 09:12  bjoo

	* lib/actions/ferm/: fermacts/zolotarev4d_fermact_bj_w.h,
	  qprop/zolotarev4d_qprop.cc: Added untested zolotarev4d_qprop.cc
	  -- this may need mucking with later

2004-01-06 08:59  bjoo

	* lib/Makefile.am, lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/util/gauge/stag_phases_s.cc,
	  mainprogs/tests/t_propagator_s.cc: Changed Staggered K-S phases
	  to agree with MILC. Beta phases still need change

2004-01-06 05:42  bjoo

	* aclocal.m4, include/chromabase.h, lib/Makefile.am,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h, lib/meas/eig/eig_w.h,
	  lib/meas/eig/ischiral_w.cc, lib/meas/eig/ischiral_w.h,
	  mainprogs/tests/t_ovlap_bj.cc: Added ischiral and ovddag. Qprop
	  next

2004-01-06 00:02  edwards

	* mainprogs/main/propagator.cc: Changed input version.

2004-01-05 23:59  edwards

	* mainprogs/main/: bar3ptfn.cc, hypsmear.cc, make_source.cc,
	  propagator.cc, seqprop.cc, spectrum_w.cc: Standardized the IO.

2004-01-05 23:56  edwards

	* lib/meas/smear/: sink_smear2_w.cc, sink_smear2_w.h: Changed back
	  to old "kind" conventions.

2004-01-05 23:51  edwards

	* lib/io/: param_io.cc, param_io.h: Changed WvfType back to WvfKind

2004-01-05 23:46  edwards

	* mainprogs/main/Makefile.am: Moved seqprop from EXTRA programs to
	  check_PROGRAMS.

2004-01-05 23:16  edwards

	* lib/meas/hadron/hadron_w.h: Added srcfil.h

2004-01-05 21:52  edwards

	* lib/io/: param_io.cc, param_io.h: More changes.

2004-01-05 21:09  edwards

	* lib/io/: io.h, param_io.cc, param_io.h: Added XML parameter
	  reading.

2004-01-05 20:58  edwards

	* lib/Makefile.am: Added parameter XML IO.

2004-01-05 20:32  edwards

	* include/gaugeact.h: Added missing inheritance in EmptyGaugeAct.

2004-01-05 20:31  edwards

	* lib/meas/hadron/: formfac_w.cc, formfac_w.h: Added some doxygen
	  comments.

2004-01-05 20:30  edwards

	* lib/io/: param_io.cc, param_io.h: First versions of various XML
	  parameter reading.

2004-01-05 16:50  edwards

	* mainprogs/main/seqprop.cc: Work in progress.

2004-01-05 16:48  edwards

	* mainprogs/main/: spectrum_w.cc, bar3ptfn.cc: Changed WVF_KIND to
	  WVF_TYPE.

2004-01-05 16:47  edwards

	* lib/meas/smear/: sink_smear2_w.cc, sink_smear2_w.h: Changed from
	  KIND to TYPE.

2004-01-05 16:46  edwards

	* lib/meas/hadron/hadron_w.h: Added more include files.

2004-01-05 15:38  ikuro

	* lib/meas/smear/displacement.cc: [no log message]

2004-01-05 11:51  ikuro

	* lib/Makefile.am: [no log message]

2004-01-05 11:15  ikuro

	* lib/meas/smear/smear.h: [no log message]

2004-01-05 11:10  ikuro

	* lib/meas/smear/: displacement.cc, displacement.h: [no log
	  message]

2004-01-05 10:32  edwards

	* include/fermact.h: Added more comments.

2004-01-05 10:32  edwards

	* include/fermact.h: Fixed indentation.

2004-01-05 00:22  edwards

	* include/linearop.h: Added doxygen comments.

2004-01-05 00:19  edwards

	* lib/actions/ferm/fermacts/asqtad_state.h: Added doxygen comments.

2004-01-05 00:01  edwards

	* include/: chroma.h, chromabase.h: Fixed more doxygen comments.

2004-01-04 23:57  edwards

	* include/: chromabase.h, fermact.h: Improved doxygen comments.

2004-01-04 23:22  edwards

	* lib/Makefile.am: Made the dwf base array routines into dwf base
	  qprop routines.

2004-01-04 23:21  edwards

	* lib/actions/ferm/: fermacts/prec_dwf_fermact_array_w.h,
	  fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_dwf_fermact_array_w.h,
	  fermacts/unprec_dwf_fermact_base_array_w.h,
	  fermacts/unprec_ovdwf_fermact_array_w.h,
	  qprop/prec_dwf_fermact_qprop_array_w.cc, qprop/quarkprop4_w.h,
	  qprop/unprec_dwf_fermact_qprop_array_w.cc: Made dwf fermact base
	  array's into a template. Moved qprop code over to qprop dir and
	  templatized them.

2004-01-04 20:00  edwards

	* lib/meas/hadron/: barcomp_w.cc, barcomp_w.h: Fixed up doxygen
	  comments.

2004-01-04 19:47  edwards

	* lib/: meas/hadron/curcor2_w.cc, meas/hadron/curcor2_w.h,
	  meas/hadron/formfac_w.cc, meas/hadron/formfac_w.h,
	  meas/smear/ape_smear.cc, update/heatbath/su3hb.cc,
	  update/heatbath/su3hb.h, update/heatbath/su3over.cc,
	  update/heatbath/su3over.h, util/gauge/eesu2.cc,
	  util/gauge/eesu2.h, util/gauge/eeu1.cc, util/gauge/eeu1.h,
	  util/gauge/expmat.cc, util/gauge/expmat.h,
	  util/gauge/unit_check.cc: Fixed up doxygen comments.

2004-01-04 16:56  edwards

	* lib/meas/eig/: eig_spec_w.cc, gramschm.cc, ritz.cc, sn_jacob.cc:
	  First pass at constructing eigenvalue routines.

2004-01-03 13:48  edwards

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h: Removed
	  unneeded include.

2004-01-03 13:48  edwards

	* lib/actions/ferm/fermacts/stag_fermact_s.h: First version.

2004-01-03 13:44  edwards

	* lib/actions/ferm/fermacts/stag_fermact_s.cc: First staggered
	  version.

2004-01-03 13:34  edwards

	* lib/actions/ferm/fermacts/prec_clover_fermact_w.cc: Added ifdef'd
	  out dsduf and triacntr.

2004-01-03 09:54  bjoo

	* mainprogs/tests/t_ovlap_bj.cc: Sorted E-values and normalisation
	  in ZOlotarev

2004-01-02 17:48  edwards

	* lib/meas/gfix/: coulgauge.cc, grelax.cc, grelax.h: Algorithm
	  fix!! In the translation from SZIN, the CB was removed in the
	  usage of grelax. This is vital, and it is put back in. That means
	  grelax now has explicit subsets on the LHS.

2004-01-02 16:55  edwards

	* lib/meas/gfix/coulgauge.cc: Set to always print. Pretty printed
	  output format.

2004-01-02 16:54  edwards

	* mainprogs/tests/t_gfix.cc: Cleanups.

2004-01-02 16:28  edwards

	* lib/meas/gfix/coulgauge.h: Oops, had the wrong name for the
	  subroutine! Now fixed.

2004-01-02 16:19  edwards

	* mainprogs/tests/t_gfix.cc: First version.

2004-01-02 16:19  edwards

	* mainprogs/tests/Makefile.am: Added t_gfix to EXTRA_PROGRAMS.

2004-01-02 15:53  edwards

	* lib/meas/gfix/: grelax.cc, grelax.h: Bug fix. Added missing
	  references on decl. of grelax.

2004-01-01 22:46  tag chroma1-4-0

2004-01-01 22:46  edwards

	* NEWS: Info on 1.4.0

2004-01-01 22:31  edwards

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc: Removed
	  unintended & in defs of u_tmp.

2004-01-01 22:19  edwards

	* include/fermact.h, include/linearop.h,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/ev_state.h,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/overlap_fermact_base_w.h,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/prec_dwf_fermact_base_w.h,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/prec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_clover_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_w.h,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev_state.h,
	  lib/actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop.cc,
	  lib/actions/ferm/qprop/prec_fermact_qprop_array.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  lib/actions/ferm/qprop/unprec_qprop_w.h,
	  mainprogs/main/propagator.cc, mainprogs/tests/t_conslinop.cc,
	  mainprogs/tests/t_dwflinop.cc, mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_precact.cc, mainprogs/tests/t_precdwf.cc,
	  mainprogs/tests/t_propagator_s.cc: Removed all proxies. Switched
	  to only use Handles (proxies were just glorified handles).
	  Changed fermact factory functions to require a Handle<const
	  ConnectState>  instead of a pointer to a connect state.  Added
	  Fermion and Gauge BC support.  Now a new virtual getFermBC in
	  FermAct.  Now, the semantics is the FermAct is responsible for
	  applying the Fermionic BC. All the fermacts changed to pass a
	  FermBC which is then applied to the U fields in createState. This
	  is supplied as a default in createState. The overlap and Asqtad
	  had this FermBC.modify manually added.

2004-01-01 22:10  edwards

	* lib/actions/ferm/linop/lovlapms_w.h: Changed pointers to use
	  handles. Now pass in a handle to an UnprecWilsonTypeFermAct.

2004-01-01 22:08  edwards

	* lib/actions/ferm/linop/lmdagm_w.h: Changed to use handles. Now
	  can construct from a handle or a pointer.

2004-01-01 22:08  edwards

	* lib/actions/ferm/linop/asq_dsl_s.h: Changed to use doxygen
	  comments.

2004-01-01 22:07  edwards

	* include/gaugeact.h: Added more support (createState, dsdu). Have
	  an Empty gauge act class.

2004-01-01 22:06  edwards

	* include/linopfound.h: Unused.

2004-01-01 22:05  edwards

	* include/: fermbc.h, gaugebc.h: Boundary condition support.

2004-01-01 22:03  edwards

	* mainprogs/main/Makefile.am: Added EXTRA_PROGRAMS.

2004-01-01 22:01  edwards

	* mainprogs/main/seqprop.cc: First version.

2004-01-01 22:00  edwards

	* mainprogs/main/Makefile.am: Added seqprop.cc

2004-01-01 22:00  edwards

	* lib/util/gauge/: gauge.h, phfctr.cc, phfctr.h: Removed phfctr.cc
	  from includes. Made obsolete.

2004-01-01 21:58  edwards

	* aclocal.m4: Induced changes.

2004-01-01 21:57  edwards

	* lib/update/molecdyn/hamilton.h: More changes.

2004-01-01 21:55  edwards

	* lib/Makefile.am: Removed phfctr.cc

2004-01-01 21:52  tag chroma1-3-3pre

2004-01-01 21:52  edwards

	* lib/actions/ferm/linop/unprec_wilson_linop_w.cc: Changed back to
	  Mass form.

2004-01-01 20:42  edwards

	* include/chromainc.h: Removed some unneeded includes. Removed Exp.
	  enum. (moved to expmat).

2004-01-01 17:14  edwards

	* lib/update/molecdyn/hamilton.h: Getting there. Now has support
	  for hybtrj and camptrj.

2004-01-01 17:06  edwards

	* lib/update/molecdyn/step/hybtrj.cc: Small bug fix in translation.

2004-01-01 10:32  edwards

	* lib/util/gauge/unit_check.cc: Use another overloading of reunit
	  that avoids the LatticeBoolean.

2003-12-31 18:59  edwards

	* lib/update/molecdyn/hamilton.h: Removed use of lbad in reunit
	  call.

2003-12-31 18:58  edwards

	* lib/util/gauge/: reunit.cc, reunit.h: Added another wrapper of
	  reunit that does not require lbad.

2003-12-31 18:52  tag chroma1-3-2

2003-12-31 18:52  edwards

	* NEWS: Info on 1.3.2

2003-12-31 18:48  edwards

	* lib/update/molecdyn/: hybrid_orig.cc, hywrmup_orig.cc: Original
	  translated versions mainly for reference. Will be removed.

2003-12-31 18:47  edwards

	* lib/update/molecdyn/step/: leapp.cc, leappmx.cc: Small tweaks.

2003-12-31 18:47  edwards

	* lib/update/molecdyn/step/endoftrj.cc: Small cleanups.

2003-12-31 18:46  edwards

	* lib/update/molecdyn/hybrid.h: First stab at a concrete version.

2003-12-31 18:46  edwards

	* lib/update/molecdyn/hamilton.h: More changes. Now looking
	  better...

2003-12-30 15:07  edwards

	* lib/update/molecdyn/noise/: frmnse_w.cc, wlfrmnse_w.cc: Rough
	  versions of noise terms.

2003-12-30 14:57  edwards

	* lib/update/molecdyn/step/rhybtrj.cc: Rough versions of R alg.

2003-12-30 14:52  edwards

	* lib/update/molecdyn/step/: camptrj.cc, endoftrj.cc, hybtrj.cc,
	  interpol.cc, leapp.cc, leappmx.cc, leapu.cc, refrsh.cc: Rough
	  versions of step code.

2003-12-30 14:50  edwards

	* lib/update/molecdyn/mese/: clmesferm_w.cc, mese.cc, mesferm_w.cc,
	  mesmom.cc, wlmesferm_w.cc: Rough versions of mese code.

2003-12-30 14:50  edwards

	* lib/update/molecdyn/hamilton.h: More tweaks.

2003-12-30 14:49  edwards

	* lib/util/gauge/: eesu2.cc, eesu2.h, eeu1.cc, eeu1.h, expmat.cc,
	  expmat.h: More exponentiators.

2003-12-30 12:27  tag chroma-1-3-1pre2

2003-12-30 12:27  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev_state.h,
	  lib/actions/ferm/linop/naik_term_s.cc,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  lib/io/readszinferm_w.cc, lib/meas/hadron/pions_follana_s.cc,
	  lib/meas/hadron/walfil_s.cc, lib/util/gauge/stag_phases_s.cc,
	  lib/util/gauge/stag_phases_s.h, mainprogs/tests/t_ovlap_bj.cc,
	  mainprogs/tests/t_propagator_s.cc, tests/t_asqtad_prop/DATA,
	  tests/t_asqtad_prop/XMLDAT.reference,
	  tests/t_asqtad_prop/t_nersc.cfg, tests/t_ovlap_bj/DATA,
	  tests/t_ovlap_bj/eigenvector_000,
	  tests/t_ovlap_bj/eigenvector_001,
	  tests/t_ovlap_bj/eigenvector_002,
	  tests/t_ovlap_bj/eigenvector_003,
	  tests/t_ovlap_bj/eigenvector_004,
	  tests/t_ovlap_bj/eigenvector_005,
	  tests/t_ovlap_bj/eigenvector_006,
	  tests/t_ovlap_bj/eigenvector_007,
	  tests/t_ovlap_bj/eigenvector_008,
	  tests/t_ovlap_bj/eigenvector_009,
	  tests/t_ovlap_bj/eigenvector_010,
	  tests/t_ovlap_bj/eigenvector_011: Zolotarev and Staggered Changes
	  -- May Still Be Broken

2003-12-29 15:06  tag chroma-1-3-1pre

2003-12-29 15:06  edwards

	* lib/update/molecdyn/hamilton.h: A few more comments. Removed
	  dsdu.

2003-12-29 14:52  edwards

	* lib/util/gauge/: expm12.h, hotst.h, reunit.h, rgauge.h,
	  sun_proj.h, taproj.h: Added doxygen comments.

2003-12-29 14:49  edwards

	* lib/util/gauge/su3proj.h: Added some more doxygen comments.

2003-12-29 14:47  edwards

	* lib/update/heatbath/: mciter.cc, mciter.h, mciter32.cc,
	  mciter32.h, monte.cc, monte.h, su3hb.cc, su3hb.h, su3over.cc,
	  su3over.h: First pass at pure gauge routines.

2003-12-26 23:29  edwards

	* mainprogs/main/seqprop.cc: More changes.

2003-12-26 23:28  edwards

	* lib/meas/smear/sink_smear2_w.h: Removed include and add doxygen
	  comments.

2003-12-26 23:28  edwards

	* lib/meas/smear/sink_smear2_w.cc: Added include and fixed doxgen
	  comments.

2003-12-26 23:27  edwards

	* lib/meas/smear/gaus_smear.h: Added doxgen comments.

2003-12-26 15:00  edwards

	* mainprogs/main/seqprop.cc: More changes.

2003-12-21 21:20  edwards

	* aclocal.m4, configure: Induced changes.

2003-12-21 21:19  edwards

	* lib/Makefile.am: Added wall_qprop_w.cc

2003-12-21 21:18  edwards

	* lib/meas/hadron/wall_qprop_w.cc: Small tweaks.

2003-12-20 07:11  bjoo

	* lib/actions/ferm/fermacts/asqtad_state.h,
	  mainprogs/tests/t_propagator_s.cc: Steve's working version pre
	  structural mods

2003-12-20 07:10  bjoo

	* lib/actions/ferm/linop/naik_term_s.cc: Steve's working version
	  pre mods

2003-12-17 23:07  edwards

	* aclocal.m4, configure: Induced changes.

2003-12-17 23:06  edwards

	* lib/Makefile.am: Added mesonseqsrc_w.cc, barseqsrc_w.cc,
	  pionseqtest_w.cc

2003-12-17 23:05  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, mesonseqsrc_w.cc,
	  wall_qprop_w.cc: Bug fixes (in conversions and cleanup).

2003-12-17 12:45  edwards

	* include/chromabase.h: Changed fuzz and twopi to Real instead of
	  float.

2003-12-17 12:35  edwards

	* mainprogs/main/bar3ptfn.cc: Removed tests of boundary. Added call
	  to setph

2003-12-17 12:34  edwards

	* mainprogs/main/spectrum_w.cc: Removed tests of boundary.

2003-12-17 09:54  bjoo

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  mainprogs/tests/t_ovlap_bj.cc: Commented lovlapms excessively and
	  took out many debug statements

2003-12-17 08:22  bjoo

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  mainprogs/tests/t_ovlap_bj.cc: Initieal no eigenvalues code for
	  Zolotarev4D. Seems to satisfy GW relation

2003-12-17 06:45  bjoo

	* lib/actions/ferm/linop/lmdagm_w.h: Added Handles to lmdagm now
	  also to the multi1d<LatticeFermion> version too

2003-12-17 06:39  bjoo

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/linop/lmdagm_w.h, mainprogs/tests/t_ovlap_bj.cc:
	  Added Handles to lmdagm -- but there are still problems elsewhere

2003-12-17 06:12  bjoo

	* other_libs/intel_sse_wilson_dslash/src/:
	  parscalar/32bit/dslash/sse_su3dslash_w.c,
	  parscalar/64bit/dslash/sse_su3dslash_w.c,
	  scalar/32bit/dslash/sse_su3dslash_w.c,
	  scalar/64bit/dslash/sse_su3dslash_w.c: Propagated refcounting to
	  all versions

2003-12-17 06:03  bjoo

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  mainprogs/tests/t_ovlap_bj.cc: Compiles now. Still buggy

2003-12-17 00:17  edwards

	* lib/meas/hadron/mesonseqsrc_w.cc: Small fixes.

2003-12-17 00:04  edwards

	* mainprogs/main/seqprop.cc: Changed args to seqPionTest.

2003-12-17 00:03  edwards

	* lib/meas/hadron/: seqpiontest_w.cc, seqpiontest_w.h: Initial
	  versions.

2003-12-16 23:52  edwards

	* mainprogs/main/seqprop.cc: Initial version.

2003-12-16 23:50  edwards

	* lib/util/ft/: sftmom.cc, sftmom.h: Added function to return decay
	  direction. Added some doxygen comments.

2003-12-16 22:56  edwards

	* lib/meas/hadron/: barseqsrc_w.cc, barseqsrc_w.h,
	  mesonseqsrc_w.cc, mesonseqsrc_w.h: Initial versions.

2003-12-16 21:23  edwards

	* lib/meas/hadron/formfac_w.cc: Removed include of qdp_util.h

2003-12-16 17:25  edwards

	* mainprogs/main/propagator.cc: Added call of setph and phfctr.

2003-12-16 17:24  edwards

	* lib/meas/hadron/hadron_w.h: Fixed name of walfil_w.h

2003-12-16 17:21  edwards

	* lib/util/gauge/phfctr.cc: Fixed include statement.

2003-12-16 17:19  edwards

	* lib/Makefile.am: Added phfctr call. Removed setph.

2003-12-16 17:19  edwards

	* lib/geom/: setph.cc, setph.h: Moved to lib/util/gauge.

2003-12-16 17:18  edwards

	* lib/util/gauge/: gauge.h, phfctr.cc, phfctr.h: Moved phase factor
	  here from lib/geom

2003-12-16 16:56  edwards

	* lib/geom/setph.cc: Trivial change.

2003-12-16 16:54  edwards

	* lib/geom/: setph.cc, setph.h: Simple-minded version of BC
	  phase-factor constructor.

2003-12-16 16:53  edwards

	* lib/Makefile.am: Added setph.cc

2003-12-16 11:19  bjoo

	* lib/actions/ferm/linop/: lovlapms_w.cc, lovlapms_w.h: Here they
	  are

2003-12-15 23:34  edwards

	* lib/meas/hadron/: wall_qprop_w.cc, wall_qprop_w.h: Initial
	  versions.

2003-12-15 22:48  edwards

	* lib/meas/hadron/barcomp_w.cc: Added doxygen comment.

2003-12-15 21:50  edwards

	* lib/meas/hadron/hadron_w.h: Added wallfil_w.h

2003-12-15 21:34  edwards

	* lib/meas/hadron/: walfil_s.cc, walfil_w.cc: Fixed up wall fill
	  construction.

2003-12-15 21:16  edwards

	* aclocal.m4, configure: Induced changes.

2003-12-15 21:16  edwards

	* lib/Makefile.am: Added wallfil_[ws].cc

2003-12-15 21:15  edwards

	* lib/meas/hadron/: walfil_s.cc, walfil_w.cc, walfil_s.h,
	  walfil_w.h: Initial versions.

2003-12-15 21:06  edwards

	* lib/meas/hadron/srcfil.h: Added doxygen comments.

2003-12-15 20:57  edwards

	* mainprogs/tests/t_dwflinop.cc: Added another proxy.

2003-12-15 17:30  edwards

	* lib/actions/ferm/linop/: dwffld_w.cc,
	  unprec_dwf_linop_array_w.cc, unprec_dwf_linop_w.cc,
	  unprec_ovdwf_linop_array_w.cc: Removed now obsolete defs of
	  chiralProject{Plus,Minus}.

2003-12-15 16:57  edwards

	* lib/actions/ferm/invert/invcg2_array.cc: Removed norm2 def.

2003-12-15 16:54  edwards

	* mainprogs/tests/t_dwflinop.cc: Removed obsolete norm2. Added
	  proxies and state.

2003-12-15 16:48  edwards

	* mainprogs/tests/t_precact.cc: Removed hack of defining norm2.

2003-12-15 16:46  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Trivial change.

2003-12-15 16:46  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Added comment in
	  destructor.

2003-12-15 16:42  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Changed flush to endl.

2003-12-15 12:52  bjoo

	* lib/Makefile.am,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.cc,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_bj_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  mainprogs/tests/t_ovlap_bj.cc,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/scalar/32bit/dslash/sse_su3dslash_w.c:
	  Zolo changes

2003-12-14 23:23  edwards

	* lib/meas/hadron/: walfil_s.cc, walfil_w.cc: Added wall fill.

2003-12-12 09:28  bjoo

	* lib/actions/ferm/linop/: asq_dsl_s.cc, asqtad_dslash.h,
	  asqtad_linop_s.cc, asqtad_linop_s.h, asqtad_mdagm_s.cc,
	  asqtad_mdagm_s.h, dslash_s.h: Tydied up a little more

2003-12-12 08:56  bjoo

	* aclocal.m4, configure, include/fermact.h, include/linearop.h,
	  lib/Makefile.am, lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/fermacts/prec_asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/prec_asqtad_fermact_s.h,
	  lib/actions/ferm/linop/asqtad_linop_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/asqtad_mdagm_s.cc,
	  lib/actions/ferm/linop/asqtad_mdagm_s.h,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.cc,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.h,
	  lib/actions/ferm/linop/prec_asqtad_linop_s.cc,
	  lib/actions/ferm/linop/prec_asqtad_linop_s.h,
	  lib/actions/ferm/qprop/staggered_qprop.cc,
	  mainprogs/tests/t_propagator_s.cc: Moved Staggered Stuff around
	  No major change in functionality.

	  Now have EvenOddLinearOperator (and proxy) as well as
	  EvenOddStaggeredTypeFermAct.

	  EvenOddPrecAsqtad has reverted to just being Asqtad

	  (eg AsqtadLinOp, AsqtadFermAct, AsqtadMdagM etc)

	  Enjoy

2003-12-11 16:41  edwards

	* include/linearop.h: Removed meaningless const in front of ``const
	  int subsetCB()''.

2003-12-11 16:40  edwards

	* include/state.h: Small bug fix. Inserted appropriate ``return''
	  in getLinks and operator=.  Only the Intel compiler complained
	  about this.

2003-12-11 15:53  edwards

	* aclocal.m4, configure: Induced changes.

2003-12-11 15:52  edwards

	* lib/Makefile.am: Removed transf_w.cc from wilson sources.

2003-12-11 12:11  bjoo

	* include/fermact.h, lib/Makefile, lib/Makefile.am,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/prec_asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/prec_asqtad_fermact_s.h,
	  lib/actions/ferm/invert/invcg1.cc,
	  lib/actions/ferm/invert/invcg1.h,
	  lib/actions/ferm/invert/invcg2_s.cc,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.cc,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.h,
	  lib/actions/ferm/linop/prec_asqtad_linop_s.cc,
	  lib/actions/ferm/qprop/qprop_s.cc,
	  lib/actions/ferm/qprop/quarkprop4_w.cc,
	  lib/actions/ferm/qprop/staggered_qprop.cc, lib/util/ferm/ferm.h,
	  lib/util/ferm/transf.cc, lib/util/ferm/transf.h,
	  lib/util/ferm/transf_w.cc, lib/util/ferm/transf_w.h,
	  mainprogs/tests/t_propagator_s.cc: Does something that kinda
	  looks like its converging but don't hold your breath just yet!

2003-12-11 11:31  edwards

	* mainprogs/main/propagator.cc: Added states instead of gauge
	  fields for quarkProp4.

2003-12-10 16:26  kostas

	* lib/: Makefile.am, actions/ferm/qprop/dwf_quarkprop4_w.cc,
	  actions/ferm/qprop/quarkprop4_w.h: Modified Makefiles to include
	  dwf_quarkprop4_w.cc.	Fixed include problem in quarkprop4_w.h
	  Added code for mres and Za in file: dwf_quarkprop4_w.cc

2003-12-10 11:20  bjoo

	* include/fermact.h, lib/Makefile, lib/Makefile.am,
	  lib/actions/ferm/dslash/asq_dsl_s.cc,
	  lib/actions/ferm/dslash/asq_dsl_s.h,
	  lib/actions/ferm/dslash/dslash_s.h,
	  lib/actions/ferm/dslash/fat7_links_s.cc,
	  lib/actions/ferm/dslash/improvement_terms_s.h,
	  lib/actions/ferm/dslash/naik_term_s.cc,
	  lib/actions/ferm/fermacts/asqtad_state.h,
	  lib/actions/ferm/fermacts/prec_asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/prec_asqtad_fermact_s.h,
	  lib/actions/ferm/linop/asq_dsl_s.cc,
	  lib/actions/ferm/linop/asq_dsl_s.h,
	  lib/actions/ferm/linop/dslash_s.h,
	  lib/actions/ferm/linop/fat7_links_s.cc,
	  lib/actions/ferm/linop/improvement_terms_s.h,
	  lib/actions/ferm/linop/naik_term_s.cc,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.h,
	  lib/actions/ferm/linop/prec_asqtad_linop_s.cc,
	  lib/actions/ferm/linop/prec_asqtad_linop_s.h,
	  mainprogs/tests/t_propagator_s.cc: Compiles/Links but is still
	  broken

2003-12-10 09:27  bjoo

	* lib/actions/ferm/linop/: asqtad_linop_s.cc, asqtad_linop_s.h,
	  prec_asqtad_linop_s.cc, prec_asqtad_linop_s.h: Moved from
	  asqtad_xxx to prec_asqtad_xxx

2003-12-10 09:24  bjoo

	* lib/actions/ferm/fermacts/asqtad_state.h: Added ConnectState
	  Stuff for Asqtad

2003-12-10 09:24  bjoo

	* lib/actions/ferm/fermacts/: asqtad_fermact_s.cc,
	  asqtad_fermact_s.h, prec_asqtad_fermact_s.cc,
	  prec_asqtad_fermact_s.h: Moved from asqtad_xxxx to
	  prec_asqtad_xxx

2003-12-10 07:38  bjoo

	* lib/Makefile.am, lib/actions/ferm/dslash/asq_dsl_s.cc,
	  lib/actions/ferm/dslash/asq_dsl_s.h,
	  lib/actions/ferm/dslash/dslash_s.h,
	  lib/actions/ferm/dslash/fat7_links_s.cc,
	  lib/actions/ferm/dslash/improvement_terms_s.h,
	  lib/actions/ferm/dslash/naik_term_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.cc,
	  lib/actions/ferm/fermacts/asqtad_fermact_s.h,
	  lib/actions/ferm/invert/invcg2_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.cc,
	  lib/actions/ferm/linop/asqtad_linop_s.h,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.cc,
	  lib/actions/ferm/linop/prec_asq_mdagm_s.h,
	  lib/actions/ferm/qprop/qprop_s.cc, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_propagator_s.cc:
	  Initial addition of Steve Miller's staggered code. This code is
	  UNSAFE.

2003-12-09 17:08  edwards

	* lib/actions/ferm/linop/lovlapms_w.h: Patched up to use
	  LinearOperatorProxy.

2003-12-09 12:47  bjoo

	* aclocal.m4, lib/Makefile.am, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_ovlap_bj.cc: Committed Darn It

2003-12-09 12:44  bjoo

	* lib/actions/ferm/fermacts/: ev_state.h,
	  zolotarev4d_fermact_bj_w.cc, zolotarev4d_fermact_bj_w.h,
	  zolotarev4d_fermact_w.cc, zolotarev_state.h: Zolotarev stuff from
	  Balint. Will remove renaming later

2003-12-09 05:33  bjoo

	* include/: zolotarev.h, Makefile.am: Dropped zolotarev.h in here

2003-12-09 05:33  bjoo

	* lib/: Makefile, Makefile.am,
	  actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  actions/ferm/fermacts/zolotarev_coeffs.cc,
	  actions/ferm/linop/zolotarev.h,
	  actions/ferm/linop/zolotarev4d_linop_w.cc: Moved Zolotarev files
	  around some

2003-12-08 12:02  edwards

	* mainprogs/tests/t_precdwf.cc: Fixed flop count of Ndiag.

2003-12-08 12:02  edwards

	* lib/actions/ferm/linop/prec_dwf_linop_array_w.cc: Small speed
	  improvements.

2003-12-06 17:14  edwards

	* NEWS: Info on 1.3.1 .

2003-12-06 17:13  edwards

	* mainprogs/tests/t_conslinop.cc: Small change to new ConnectState

2003-12-06 17:05  edwards

	* lib/meas/gfix/grelax.cc: More cleanups.

2003-12-06 16:59  edwards

	* lib/meas/gfix/rot_colvec.h: Bug fix in name Latice to Lattice.

2003-12-06 16:57  edwards

	* lib/meas/gfix/grelax.cc: Cleanups.

2003-12-06 15:59  edwards

	* lib/util/gauge/: su2extract.cc, su2extract.h, su3proj.cc,
	  sunfill.cc, sunfill.h: Changed to return in place results instead
	  of as a functional return.

2003-12-06 15:58  edwards

	* lib/meas/glue/mesplq.cc: Small change of comments.

2003-12-06 15:56  edwards

	* lib/: meas/gfix/axgauge.cc, meas/gfix/axgauge.h,
	  meas/gfix/coulgauge.cc, meas/gfix/coulgauge.h, meas/gfix/gfix.h,
	  meas/gfix/grelax.cc, meas/gfix/grelax.h, meas/gfix/polar_dec.cc,
	  meas/gfix/polar_dec.h, meas/gfix/rot_colvec.cc,
	  meas/gfix/rot_colvec.h, Makefile.am: Added axgauge, coulgauge,
	  grelax, polar_dec, rot_colvec

2003-12-06 12:35  edwards

	* lib/util/gauge/su2extract.h: Added doxygen comments.

2003-12-06 12:04  edwards

	* lib/util/gauge/sunfill.h: Added doxygen comments.

2003-12-04 16:52  edwards

	* mainprogs/tests/t_precdwf.cc: Small tweak.

2003-12-03 23:26  edwards

	* mainprogs/tests/t_precdwf.cc: Use slicker method of timing.

2003-12-03 21:59  edwards

	* configure: Induced changes.

2003-12-03 21:58  edwards

	* lib/Makefile.am: Added overlap_fermact_base_w.cc

2003-12-03 21:57  edwards

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h: Made base
	  class of overlap_fermact_base

2003-12-03 21:57  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h:
	  Added some comments.

2003-12-03 21:56  edwards

	* lib/actions/ferm/fermacts/: overlap_fermact_base_w.cc,
	  overlap_fermact_base_w.h: Base class for overlap-like actions.

2003-12-03 21:56  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Added
	  overlap_fermact_base_w.h

2003-12-03 01:13  edwards

	* lib/actions/ferm/linop/zolotarev4d_linop_w.cc: More tweaks. Does
	  not compile - possibly just use lovlapms

2003-12-03 01:12  edwards

	* lib/actions/ferm/linop/lovlapms_w.h: Some more tweaks.

2003-12-03 01:12  edwards

	* lib/actions/ferm/fermacts/: zolotarev4d_fermact_w.cc,
	  zolotarev4d_fermact_w.h: Moved degree init code from linop into
	  here.  Now generate generic overlap-operator.

2003-12-03 01:11  edwards

	* aclocal.m4: Induced changes.

2003-12-03 01:10  edwards

	* lib/Makefile.am: Added zolotarev4d_fermact and lovlapms

2003-12-02 23:56  edwards

	* lib/actions/ferm/linop/lovlapms_w.cc: Now compiles.

2003-12-02 23:35  edwards

	* lib/actions/ferm/fermacts/ev_state.h: Bug fixes for new type
	  abstractions.

2003-12-02 22:04  edwards

	* lib/actions/ferm/: fermacts/zolotarev4d_fermact_w.cc,
	  fermacts/zolotarev4d_fermact_w.h, linop/zolotarev4d_linop_w.cc:
	  More changes.

2003-12-02 22:04  edwards

	* lib/actions/ferm/fermacts/ev_state.h: Added more abstractions.

2003-12-02 17:35  edwards

	* lib/actions/ferm/linop/: zolotarev4d_linop_w.cc,
	  zolotarev4d_linop_w.h: More changes. Still not compiling.

2003-12-02 17:35  edwards

	* lib/actions/ferm/fermacts/: zolotarev4d_fermact_w.cc,
	  zolotarev4d_fermact_w.h: First version that compiles.

2003-12-02 17:35  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Added zolotarev4d.

2003-12-02 17:34  edwards

	* lib/actions/ferm/fermacts/ev_state.h: Added some comments.

2003-12-02 16:32  tag chroma1-3-0

2003-12-02 16:32  edwards

	* NEWS: Info on 1.3.0

2003-12-02 16:30  edwards

	* lib/actions/ferm/fermacts/ev_state.h: New state holding ev's and
	  config.

2003-12-02 16:30  edwards

	* lib/actions/ferm/fermacts/: prec_clover_fermact_w.h,
	  prec_wilson_fermact_w.cc, prec_wilson_fermact_w.h,
	  unprec_clover_fermact_w.h, unprec_wilson_fermact_w.cc,
	  unprec_wilson_fermact_w.h: Removed unnecessary includes.

2003-12-02 10:46  edwards

	* mainprogs/tests/t_precact.cc: Changed to use proxy functions.

2003-12-02 10:45  edwards

	* lib/actions/ferm/fermacts/: prec_clover_fermact_w.cc,
	  prec_clover_fermact_w.h, prec_dwf_fermact_array_w.cc,
	  prec_dwf_fermact_array_w.h, prec_dwf_fermact_base_array_w.cc,
	  prec_dwf_fermact_base_array_w.h, prec_dwf_fermact_base_w.cc,
	  prec_dwf_fermact_base_w.h, prec_wilson_fermact_w.cc,
	  prec_wilson_fermact_w.h, unprec_clover_fermact_w.cc,
	  unprec_clover_fermact_w.h, unprec_dwf_fermact_array_w.cc,
	  unprec_dwf_fermact_array_w.h, unprec_dwf_fermact_base_array_w.cc,
	  unprec_dwf_fermact_base_array_w.h, unprec_dwf_fermact_base_w.cc,
	  unprec_dwf_fermact_base_w.h, unprec_dwf_fermact_w.cc,
	  unprec_dwf_fermact_w.h, unprec_ovdwf_fermact_array_w.cc,
	  unprec_ovdwf_fermact_array_w.h, unprec_ovext_fermact_array_w.cc,
	  unprec_ovext_fermact_array_w.h, unprec_wilson_fermact_w.cc,
	  unprec_wilson_fermact_w.h, zolotarev4d_fermact_w.cc,
	  zolotarev4d_fermact_w.h: Changed all to use ConnectState instead
	  of the more specialized multi1d<LatticeColorMatrix>.

2003-12-02 10:44  edwards

	* lib/actions/ferm/qprop/: fermact_qprop.cc,
	  fermact_qprop_array.cc, prec_fermact_qprop.cc,
	  prec_fermact_qprop_array.cc, quarkprop4_w.cc, quarkprop4_w.h,
	  unprec_qprop_w.h: Changed all uses of multi1d<LatticeColorMatrix>
	  to use a ConnectState.

2003-12-02 10:43  edwards

	* lib/actions/ferm/invert/: invcg2.cc, invcg2_array.cc: Changed
	  debugging comments.

2003-12-02 10:41  edwards

	* include/linearop.h: Added proxy classes to hold and function like
	  a linear operator.

2003-12-02 10:40  edwards

	* include/fermact.h: Added foundry functions for Connection State
	  and changed all functions to use such a state.

2003-12-01 23:46  edwards

	* include/state.h: Base and concrete simple states (holds links,
	  etc.).

2003-12-01 23:45  edwards

	* include/handle.h: Handle class (also called counted-pointer and
	  shared_pointer).

2003-12-01 23:17  tag chroma1-2-1

2003-12-01 23:17  edwards

	* NEWS: Info on 1.2.1

2003-11-26 10:20  edwards

	* mainprogs/tests/t_precdwf.cc: Tests prec. dwf operator.

2003-11-25 17:10  edwards

	* mainprogs/tests/Makefile.am: Added t_precdwf

2003-11-24 23:40  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_base_w.cc: Bug fix -
	  chi5 now updated correctly for RHS.

2003-11-24 23:18  edwards

	* lib/util/gauge/hotst.h: Added doxygen comments.

2003-11-24 23:16  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_base_array_w.cc: Bug
	  fix in right-hand side for inverter.

2003-11-24 22:30  edwards

	* lib/actions/ferm/fermacts/prec_dwf_fermact_array_w.cc: Bug fix.
	  Use the unprec. linop for the PV operator.

2003-11-24 22:03  edwards

	* mainprogs/tests/t_precact.cc: Added qprop tests.

2003-11-24 13:56  kostas

	* lib/actions/ferm/linop/: eo4d_dwf_factors_array_w.cc,
	  eo4d_dwf_factors_array_w.h, eo4d_dwf_linop_array_w.cc,
	  eo4d_dwf_linop_array_w.h: removing obsolete files

2003-11-24 11:11  kostas

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.cc,
	  prec_dwf_linop_array_w.h: Changed convensions to Robert's DWF.
	  Converted m_f to m_q everywhere.

2003-11-23 01:23  tag chroma1-2-0

2003-11-23 01:23  edwards

	* NEWS: Info on 1.2.0

2003-11-23 01:20  edwards

	* lib/actions/ferm/linop/dslash_w.h: Removed eo4d classes.

2003-11-23 01:18  edwards

	* lib/actions/ferm/qprop/: fermact_qprop_array.cc, quarkprop4_w.cc,
	  quarkprop4_w.h: Switch fermact Array to normal FermionAction like
	  support.

2003-11-23 01:17  edwards

	* lib/actions/ferm/qprop/: prec_fermact_qprop.cc,
	  prec_fermact_qprop_array.cc: Default qprop for even-odd prec base
	  class.

2003-11-23 01:15  edwards

	* lib/actions/ferm/linop/: unprec_dwf_linop_array_w.h,
	  unprec_ovdwf_linop_array_w.h, unprec_ovext_linop_array_w.h: Added
	  size()

2003-11-23 01:15  edwards

	* lib/actions/ferm/linop/prec_wilson_linop_w.cc: Changed names to
	  mhalf.

2003-11-23 01:15  edwards

	* lib/actions/ferm/linop/prec_wilson_linop_w.h: Bug fix in
	  evenEvenLinOp.

2003-11-23 01:14  edwards

	* lib/actions/ferm/linop/prec_dwf_linop_array_w.cc: Added proper
	  even-odd support.

2003-11-23 01:04  edwards

	* lib/actions/ferm/linop/: prec_dwf_linop_array_w.h,
	  prec_dwf_linop_array_w.cc: Added proper even-odd support.

2003-11-23 01:03  edwards

	* lib/actions/ferm/linop/lmdagm_w.h: Added multi1d<T> partial
	  specialization.

2003-11-23 01:02  edwards

	* lib/actions/ferm/linop/linop.h: Added prec wilson and dwf.
	  Removed eof4d.

2003-11-23 01:01  edwards

	* lib/actions/ferm/linop/eo4d_dwf_linop_array_w.h: Now obsolete -
	  added #error decl.

2003-11-23 01:00  edwards

	* lib/actions/ferm/linop/eo4d_dwf_factors_array_w.cc: Now obsolete:
	  added #error decl.

2003-11-23 01:00  edwards

	* lib/actions/ferm/invert/: invcg2.h, invcg2_array.h: Added doxygen
	  comments

2003-11-23 00:59  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_array_w.cc,
	  prec_dwf_fermact_base_array_w.h: Changed to use EvenOddPrecLinop
	  stuff, can removed all the evenEvenLinop like stuff.

2003-11-23 00:58  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h: Changed
	  fermact_array.h to fermact.h

2003-11-23 00:57  edwards

	* lib/actions/ferm/fermacts/: unprec_dwf_fermact_base_array_w.cc,
	  unprec_dwf_fermact_base_array_w.h: Changed FermionActionArray
	  support to FermionAction.  Removed explicit dsdu def.

2003-11-23 00:56  edwards

	* lib/actions/ferm/fermacts/: unprec_dwf_fermact_base_w.cc,
	  unprec_dwf_fermact_base_w.h, unprec_clover_fermact_w.cc,
	  unprec_clover_fermact_w.h: Removed explicit dsdu def.

2003-11-23 00:56  edwards

	* lib/actions/ferm/fermacts/unprec_ovdwf_fermact_array_w.h: Changed
	  include of fermact_array.h to fermact.h

2003-11-23 00:55  edwards

	* lib/actions/ferm/fermacts/: unprec_ovext_fermact_array_w.cc,
	  unprec_ovext_fermact_array_w.h: Changed to use normal
	  FermionAction classes. Removed dsdu proto/def.

2003-11-23 00:54  edwards

	* lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h: Removed
	  explicit dsdu proto.

2003-11-23 00:54  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_array_w.cc,
	  prec_dwf_fermact_array_w.h: Base class support for DWF-like
	  actions.

2003-11-23 00:52  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Added prec. DWF support.

2003-11-23 00:52  edwards

	* lib/actions/ferm/fermacts/: prec_dwf_fermact_base_w.cc,
	  prec_dwf_fermact_base_w.h: Base class for even-odd prec DWF-like
	  actions.

2003-11-23 00:51  edwards

	* include/: fermact.h, linearop.h: Added specializations of some
	  classes for multi1d<T>.  Added extensive EvenOddPrec support.

2003-11-23 00:50  edwards

	* include/fermact_array.h: Merged into fermact.h

2003-11-23 00:48  edwards

	* aclocal.m4, configure: Induced changes.

2003-11-23 00:47  edwards

	* mainprogs/tests/t_precact.cc: Tests preconditioned actions.

2003-11-23 00:47  edwards

	* mainprogs/tests/Makefile.am: Added t_precact

2003-11-23 00:46  edwards

	* lib/Makefile.am: Removed eo4d routines in favor of  prec_dwf
	  routines. Added all sorts of base class qprop functions.

2003-11-22 16:35  edwards

	* include/linearop.h: Added even-odd precond. linear operator.

2003-11-22 16:34  edwards

	* include/fermact.h: New hooks for EvenOddPrecWilsonFermAct. Added
	  array partial specialization of FermionAction.

2003-11-22 16:34  edwards

	* lib/actions/ferm/: fermacts/prec_clover_fermact_w.cc,
	  fermacts/prec_clover_fermact_w.h,
	  fermacts/prec_dwf_fermact_base_array_w.cc,
	  fermacts/prec_dwf_fermact_base_array_w.h,
	  fermacts/prec_wilson_fermact_w.cc,
	  fermacts/prec_wilson_fermact_w.h,
	  linop/prec_dwf_linop_array_w.cc, linop/prec_dwf_linop_array_w.h,
	  linop/prec_wilson_linop_w.cc, linop/prec_wilson_linop_w.h:
	  Initial versions of precondition wilson, dwf, and clover.  Not
	  all correct yet - not hooked into Makefile.am

2003-11-22 16:33  edwards

	* lib/actions/ferm/fermacts/: unprec_clover_fermact_w.cc,
	  unprec_clover_fermact_w.h: Initial version of unpreconditioned
	  clover code.

2003-11-22 16:32  edwards

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc: Removed
	  proto-dsdu code and moved it to precondition version - that's
	  what this stuff is.

2003-11-22 16:28  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_array_w.h: Minor pretty
	  formatting of code.

2003-11-22 14:39  kostas

	* aclocal.m4, configure, lib/Makefile.am: Makefile modifications to
	  include the 4d EO preconditioning of DWF

2003-11-22 14:37  kostas

	* lib/actions/ferm/linop/: dslash_w.h, eo4d_dwf_factors_array_w.cc,
	  eo4d_dwf_factors_array_w.h, eo4d_dwf_linop_array_w.cc,
	  eo4d_dwf_linop_array_w.h, linop.h: Add inlcudes and type
	  definitions for the DWF Even Odd preconditioning in 4D (array
	  version).

2003-11-21 17:38  edwards

	* mainprogs/tests/t_dwflinop.cc: Changed to use unprec. dwf instead
	  of  ovext.

2003-11-20 00:45  tag chroma1-1-4

2003-11-20 00:45  edwards

	* NEWS: Info on 1.1.4

2003-11-20 00:43  edwards

	* include/fermact.h, include/fermact_array.h, include/linearop.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_w.cc,
	  lib/actions/ferm/fermacts/unprec_dwf_fermact_base_w.h,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.cc,
	  lib/actions/ferm/fermacts/unprec_ovext_fermact_array_w.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/invert/invcg2.cc,
	  lib/actions/ferm/invert/invcg2_array.cc,
	  lib/actions/ferm/linop/ldwfdslash_w.cc,
	  lib/actions/ferm/linop/ldwfdslash_w.h,
	  lib/actions/ferm/linop/lmdagm_w.h,
	  lib/actions/ferm/linop/lmpsim_w.cc,
	  lib/actions/ferm/linop/lmpsim_w.h,
	  lib/actions/ferm/linop/lovddag_w.cc,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlapms_w.cc,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/overlapbu_linop_w.cc,
	  lib/actions/ferm/linop/overlapbu_linop_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_dwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_dwf_linop_w.cc,
	  lib/actions/ferm/linop/unprec_dwf_linop_w.h,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.cc,
	  lib/actions/ferm/linop/unprec_ovext_linop_array_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.cc,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.h,
	  lib/actions/ferm/linop/zolotarev4d_linop_w.cc,
	  lib/actions/ferm/linop/zolotarev4d_linop_w.h,
	  lib/actions/ferm/qprop/fermact_qprop.cc,
	  lib/actions/ferm/qprop/fermact_qprop_array.cc,
	  mainprogs/tests/t_conslinop.cc, mainprogs/tests/t_dwflinop.cc,
	  mainprogs/tests/t_ldwfdslash.cc, mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_sse.cc, mainprogs/tests/t_mesplq.cc,
	  mainprogs/tests/t_overbu.cc: Changed LinearOperator to now pass
	  result as an arg to operator() and apply.  Changed FermionAction
	  interface in dsdu to pass result as arg instead of return.
	  Modified all dependent routines to use this new interface.

2003-11-20 00:40  tag chroma1-1-3

2003-11-20 00:40  edwards

	* configure: Induced changes.

2003-11-20 00:37  edwards

	* NEWS: Info on 1.1.3

2003-11-20 00:36  edwards

	* aclocal.m4: Induced changes.

2003-11-20 00:33  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Changed ND to Nd.

2003-11-16 15:04  edwards

	* lib/actions/ferm/linop/unprec_ovext_linop_array_w.cc: Bug fix -
	  added resize of ss array.

2003-11-16 14:52  edwards

	* mainprogs/main/propagator.cc: More small tweaks.

2003-11-16 14:51  edwards

	* mainprogs/tests/t_dwflinop.cc: All sorts of narly hackish test
	  thingy do-flockers.

2003-11-16 01:24  tag chroma1-1-2

2003-11-16 01:24  edwards

	* NEWS: Info on 1.1.2

2003-11-16 01:23  edwards

	* aclocal.m4, configure: Induced changes.

2003-11-16 01:22  edwards

	* lib/Makefile.am: Added ovext fermact and linop files.

2003-11-16 01:21  edwards

	* lib/actions/ferm/linop/: unprec_wilson_linop_w.cc,
	  unprec_wilson_linop_w.h: Switched from kappa to mass
	  normalization.

2003-11-16 01:21  edwards

	* lib/actions/ferm/linop/: unprec_ovext_linop_array_w.cc,
	  unprec_ovext_linop_array_w.h: Start at extended-overlap linop.

2003-11-16 01:21  edwards

	* lib/actions/ferm/linop/linop.h: Added extended-overlap linop.

2003-11-16 01:20  edwards

	* lib/actions/ferm/fermacts/: unprec_ovext_fermact_array_w.cc,
	  unprec_ovext_fermact_array_w.h: Start at a extended-overlap (5D)
	  operator.

2003-11-16 01:20  edwards

	* lib/actions/ferm/fermacts/: unprec_wilson_fermact_w.h,
	  unprec_wilson_fermact_w.cc: Switched from Kappa to Mass
	  normalization.

2003-11-16 01:19  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Added ovext files.

2003-11-15 20:36  edwards

	* lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc: Small bug
	  fix.

2003-11-15 18:29  edwards

	* lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc: Hopefully
	  fixed...

2003-11-15 00:26  edwards

	* lib/actions/ferm/linop/unprec_ovdwf_linop_array_w.cc: More
	  changes. Still not correct - realize the MINUS version is quite
	  different than the PLUS version.

2003-11-14 23:32  tag chroma1-1-1

2003-11-14 23:32  edwards

	* NEWS: Info on 1.1.1

2003-11-14 23:26  edwards

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc: Moved in
	  dsdu function.

2003-11-14 23:25  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_w.h: Made subclass
	  of dwf base class. Removed some funcs. since now defined in base
	  class.

2003-11-14 23:25  edwards

	* lib/actions/ferm/fermacts/: unprec_dwf_fermact_base_w.cc,
	  unprec_dwf_fermact_base_w.h: Base class versions of dwf-like
	  unprec. actions.

2003-11-14 23:23  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc:
	  Fixed diag. names in dsdu

2003-11-14 23:23  edwards

	* lib/actions/ferm/qprop/: unprec_dwf_qprop_array_w.cc,
	  unprec_dwf_qprop_w.cc: Moved into corresponding fermact base
	  class files.

2003-11-14 23:22  edwards

	* lib/actions/ferm/dsdu/: unprec_dwf_dsdu_array_w.cc,
	  unprec_dwf_dsdu_w.cc, unprec_wilson_dsdu_w.cc: Moved into
	  corresponding fermact files.

2003-11-14 23:22  edwards

	* lib/Makefile.am: Added base class version of dwf. Removed all
	  dsdu and extraneous qprop files (moved into corresponding fermact
	  files).

2003-11-14 22:56  edwards

	* lib/Makefile.am: Added dwf base class file. Removed dwf dsdu and
	  qprop files. Added ovdef fermact and linop files.

2003-11-14 22:55  edwards

	* lib/actions/ferm/linop/linop.h: Added ovdwf linop.

2003-11-14 22:55  edwards

	* lib/actions/ferm/linop/: unprec_ovdwf_linop_array_w.cc,
	  unprec_ovdwf_linop_array_w.h: Initial versions of overlap-dwf
	  (Borici) variant of DWF.

2003-11-14 22:54  edwards

	* lib/actions/ferm/fermacts/: unprec_dwf_fermact_array_w.cc,
	  unprec_dwf_fermact_array_w.h: Switched dsdu and qprop functions
	  to use base class.

2003-11-14 22:54  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.cc: Use
	  quark_mass function.

2003-11-14 22:54  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_base_array_w.h:
	  Added quark_mass function.

2003-11-14 22:53  edwards

	* lib/actions/ferm/fermacts/: unprec_ovdwf_fermact_array_w.cc,
	  unprec_ovdwf_fermact_array_w.h: Initial versions of overlap-dwf
	  (Borici) action.

2003-11-14 22:53  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Added DWF base class and
	  ovdwf fermacts.

2003-11-14 22:23  edwards

	* lib/actions/ferm/fermacts/: unprec_ovdwf_fermact_array_w.cc,
	  unprec_ovdwf_fermact_array_w.h: Borici variant of DWF action.

2003-11-14 22:22  edwards

	* lib/actions/ferm/fermacts/: unprec_dwf_fermact_base_array_w.h,
	  unprec_dwf_fermact_base_array_w.cc: Base class for Shamir and
	  Borici DWF classes.

2003-11-14 17:06  edwards

	* lib/actions/ferm/: linop/unprec_dwf_linop_w.cc,
	  qprop/unprec_dwf_qprop_w.cc: Bug fixes. Now completely agrees
	  with array version. E.g., an entire LatticePropagator from
	  quarkProp4 agrees in the internal index form and the array outer
	  index form.

2003-11-14 17:02  edwards

	* lib/actions/ferm/invert/invcg2.cc: Added diagnostic print of
	  norm2(chi).

2003-11-14 11:04  tag chroma1-1-0

2003-11-14 11:04  edwards

	* NEWS: Info on 1.1.0

2003-11-14 11:02  edwards

	* lib/actions/ferm/qprop/unprec_dwf_qprop_array_w.cc: Bug fix - had
	  wrong isign on PV operator. Now agrees with SZIN code.

2003-11-14 11:02  edwards

	* lib/actions/ferm/invert/invcg2_array.cc: Added in a diagnostic
	  print statement for the moment.

2003-11-14 00:12  edwards

	* lib/actions/ferm/invert/invert.h: Added invcg2_array.h

2003-11-13 23:59  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc: Bug fix. Had
	  wrong sign conventions! Also, fixed 2*Nd to just Nd.

2003-11-13 16:44  edwards

	* lib/actions/ferm/qprop/quarkprop4_w.cc: Made template static.

2003-11-13 13:19  edwards

	* lib/actions/ferm/qprop/unprec_dwf_qprop_w.cc: Moved around call
	  of linop for A. Not needed, but follows array version.

2003-11-13 13:19  edwards

	* lib/actions/ferm/qprop/unprec_dwf_qprop_array_w.cc: Moved around
	  constructor of A. Not really needed, but was messing with SSE
	  wilson constructor/destructor.

2003-11-13 13:18  edwards

	* lib/actions/ferm/qprop/: quarkprop4_w.cc, quarkprop4_w.h: Added
	  array version. Changed CC code to have more general action
	  container.

2003-11-13 13:17  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Added DWF array include.

2003-11-13 13:17  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_array_w.h: Fixed a
	  comment.

2003-11-13 13:16  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_array_w.cc: Removed
	  unused temps.

2003-11-13 13:16  edwards

	* lib/actions/ferm/linop/linop.h: Added missing include files (for
	  DWF). These only matter for a main prog trying to use these
	  routines.

2003-11-13 13:15  edwards

	* lib/Makefile.am: Added invcg2_array.cc

2003-11-13 11:43  edwards

	* lib/actions/ferm/invert/invcg2_array.cc: First running version.

2003-11-13 10:33  edwards

	* lib/actions/ferm/dsdu/unprec_wilson_dsdu_w.cc: Small change of
	  comments.

2003-11-12 23:16  edwards

	* lib/Makefile.am: Added new array versions of fermact thingies.

2003-11-12 23:15  edwards

	* lib/actions/ferm/qprop/unprec_dwf_qprop_array_w.cc: Undid
	  LatticeDWFermion unto multi1d<LatticeFermion>

2003-11-12 23:15  edwards

	* lib/actions/ferm/qprop/fermact_qprop_array.cc: Fixed up to
	  compile.

2003-11-12 23:14  edwards

	* lib/actions/ferm/qprop/fermact_qprop.cc: Moved declaration of T
	  into switch.

2003-11-12 23:13  edwards

	* lib/actions/ferm/invert/: invcg2_array.cc, invcg2_array.h: First
	  small attempt at array version of inverter.

2003-11-12 23:13  edwards

	* lib/actions/ferm/invert/invcg2array.cc: Moved to invcg2_array.cc

2003-11-12 23:13  edwards

	* lib/actions/ferm/linop/: unprec_dwf_linop_array_w.cc,
	  unprec_dwf_linop_array_w.h: Added N5 as a param. Not sure it is
	  really needed!

2003-11-12 23:12  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.h: Added N5
	  as param. Not it is really needed!

2003-11-12 23:12  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_array_w.cc: Added N5
	  as param. Not sure it is really needed!

2003-11-12 23:11  edwards

	* lib/actions/ferm/dsdu/unprec_dwf_dsdu_array_w.cc: Fixed name of
	  class.

2003-11-12 23:10  edwards

	* include/fermact_array.h: Moved over from fermactarray.h

2003-11-12 23:10  edwards

	* include/fermact.h: Moved InvType off to invtype.h

2003-11-12 23:09  edwards

	* include/fermactarray.h: Moved to fermact_array.h

2003-11-12 23:09  edwards

	* include/invtype.h: Inverter enum type.

2003-11-12 17:16  edwards

	* lib/actions/ferm/: dsdu/unprec_dwf_dsdu_array_w.cc,
	  fermacts/unprec_dwf_fermact_array_w.cc,
	  fermacts/unprec_dwf_fermact_array_w.h,
	  qprop/fermact_qprop_array.cc, qprop/unprec_dwf_qprop_array_w.cc:
	  Array versions of DWF unpreconditioned routine.

2003-11-12 17:15  edwards

	* lib/actions/ferm/invert/invcg2array.cc: Start (not working)
	  version of array inverter.

2003-11-12 17:12  edwards

	* lib/actions/ferm/linop/: unprec_dwf_linop_array_w.cc,
	  unprec_dwf_linop_array_w.h: Array versions of un-prec. DWF
	  operator.

2003-11-12 17:11  edwards

	* lib/actions/ferm/linop/: dwffld_w.cc, dwffld_w.h: Added array
	  manipulation version.

2003-11-12 17:09  edwards

	* include/fermactarray.h: Added array class

2003-11-10 00:16  edwards

	* mainprogs/main/propagator.cc: Moved off looping over qprop to
	  quarkProp4.

2003-11-10 00:08  edwards

	* include/chromabase.h: Added BaseType traits class.

2003-11-10 00:08  edwards

	* include/fermact.h: Now have qprop and qpropT functions in
	  FermionAction.

2003-11-10 00:06  edwards

	* lib/actions/ferm/qprop/quarkprop4_w.h: Added quarkprop4

2003-11-10 00:06  edwards

	* lib/actions/ferm/qprop/fermact_qprop.cc: Further templatize to
	  support qpropT and qprop.

2003-11-10 00:05  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_w.h: Added new qprop
	  routine as a redef. of a virtual function.

2003-11-10 00:04  edwards

	* lib/: Makefile.am, actions/ferm/qprop/qprop.h,
	  actions/ferm/qprop/quarkprop4_w.cc: Added quarkprop4_w.cc

2003-11-09 22:07  edwards

	* lib/actions/ferm/qprop/: fermact_qprop.cc, unprec_qprop_w.cc:
	  Moved over from unprec_qprop_ww.cc

2003-11-09 22:06  edwards

	* include/fermact.h: Removed extraneous qprop defs. Made
	  FermionAction version of qprop now real instead of abstract.

2003-11-09 22:04  edwards

	* lib/Makefile.am: Changed unprec_qprop_w.cc to fermact_qprop.cc

2003-11-09 17:52  edwards

	* lib/actions/ferm/: fermacts/unprec_dwf_fermact_w.h,
	  qprop/unprec_dwf_qprop_w.cc: Added some comments.

2003-11-09 17:36  edwards

	* include/linearop.h: Moved off enum LinOpSign to chromabase.h and
	  made it a more generic PlusMinus.

2003-11-09 17:36  edwards

	* include/chromabase.h: Added PlusMinus enum type.

2003-11-09 17:35  edwards

	* lib/actions/ferm/linop/: ldwfdslash_w.cc, ldwfdslash_w.h,
	  lmdagm_w.h, lmpsim_w.cc, lmpsim_w.h, lovddag_w.cc, lovddag_w.h,
	  lovlapms_w.cc, lovlapms_w.h, lwldslash_w.cc, lwldslash_w.h,
	  lwldslash_w_sse.cc, lwldslash_w_sse.h, overlapbu_linop_w.cc,
	  overlapbu_linop_w.h, unprec_dwf_linop_w.cc, unprec_dwf_linop_w.h,
	  unprec_wilson_linop_w.cc, unprec_wilson_linop_w.h,
	  zolotarev4d_linop_w.cc, zolotarev4d_linop_w.h: Changed the type
	  of LinOpSign to PlusMinus to make it more generic.  Moved this
	  type to chromabase.h

2003-11-09 17:34  edwards

	* lib/actions/ferm/linop/: dwffld_w.h, dwffld_w.cc: DWF rotation
	  routine.

2003-11-09 17:33  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_w.h: Added a
	  Pauli-Villars linop routine.

2003-11-09 17:33  edwards

	* lib/actions/ferm/fermacts/unprec_dwf_fermact_w.cc: Moved off
	  qprop routine to qprop dir.

2003-11-09 17:32  edwards

	* lib/actions/ferm/dsdu/unprec_wilson_dsdu_w.cc: Small tweaks.

2003-11-09 17:31  edwards

	* lib/actions/ferm/qprop/unprec_dwf_qprop_w.cc: Possibly correct
	  version of DWF propagator including projection to 4D.

2003-11-09 17:26  edwards

	* lib/Makefile.am: Added some new dwf routines. Moved around dsdu
	  routines.

2003-11-09 17:18  edwards

	* lib/actions/ferm/dsdu/: unprec_dwf_dsdu_w.cc,
	  unprec_wilson_dsdu_w.cc: Moved from lib/update/molecdyn/dsdu
	  directory.

2003-11-09 17:17  edwards

	* lib/update/molecdyn/dsdu/: unprec_dwf_dsdu_w.cc,
	  unprec_wilson_dsdu_w.cc: Moved to lib/actions/ferm/dsdu
	  directory.

2003-11-08 11:11  edwards

	* lib/actions/ferm/linop/unprec_dwf_linop_w.cc: Reimplemented. Now
	  possibly correct (but inefficient).

2003-11-07 23:22  edwards

	* aclocal.m4, configure: Induced changes.

2003-11-07 23:21  edwards

	* lib/actions/ferm/: fermacts/unprec_dwf_fermact_w.cc,
	  fermacts/unprec_dwf_fermact_w.h, linop/unprec_dwf_linop_w.cc,
	  linop/unprec_dwf_linop_w.h: Switched unprec. DWF action to not
	  use a dslash, but it's own operator.	Still needs work - not
	  fully correct or implemented.

2003-11-07 23:19  edwards

	* mainprogs/tests/Makefile.am: Added t_dwflinop

2003-11-07 23:18  edwards

	* mainprogs/tests/t_dwflinop.cc: Linop test.

2003-11-07 20:36  edwards

	* include/chroma_scalarsite_dwdefs.h: Changed Ls to 8 to avoid SSE
	  problems.

2003-11-05 13:35  edwards

	* lib/actions/ferm/linop/lwldslash_w_sse.h: Inserted PScalar into
	  PrimitiveSUMatrix typedef.

2003-11-05 13:10  edwards

	* other_libs/intel_sse_wilson_dslash/src/:
	  parscalar/packer/nopad/qdp_packer.cc,
	  scalar/packer/nopad/qdp_packer.cc,
	  scalar/packer/p4_pad/qdp_packer.cc: Inserted new PScalar in DWF
	  slot.

2003-11-03 22:43  edwards

	*
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/p4_pad/qdp_packer.cc:
	  Moved (empty) DWF index to fastest varying index to reflect new
	  QDP implementation.

2003-11-03 22:41  edwards

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure:
	  Induced changes.

2003-11-01 21:36  edwards

	* include/chroma_scalarsite_dwdefs.h: Moved around PDWVector index
	  to innermost index.

2003-11-01 21:36  edwards

	* include/chroma_scalarsite_defs.h: Changed to Ls=4

2003-10-29 21:33  edwards

	* tests/spectrum_w/spectrum_w_v7.linux-scalar-intel.xml.gz: Changed
	  output version and don't compute all currents.

2003-10-29 21:32  edwards

	* mainprogs/main/spectrum_w.cc: Changed output format and number of
	  vector currents measured.

2003-10-29 20:56  edwards

	* tests/spectrum_w/spectrum_w_v7.linux-scalar-intel.xml.gz:
	  Switched output format of currents.

2003-10-29 20:55  edwards

	* lib/meas/hadron/curcor2_w.cc: Added num_vec_cur to xml output.

2003-10-29 20:53  edwards

	* lib/meas/hadron/curcor2_w.cc: Overhauled output format. It's not
	  as elegant, but much simpler to process.

2003-10-29 16:42  edwards

	* tests/spectrum_w/spectrum_w_v7.linux-scalar-intel.xml.gz: Bug
	  fix. Previously incorrect current data.

2003-10-29 16:42  edwards

	* lib/meas/hadron/curcor2_w.cc: BUG FIX!! XML currents were junk!
	  In the t_eff loop, the currents were uninitialized, but
	  accumulated. Now, fixed that and appears to agree with szin
	  output.

2003-10-23 12:18  bjoo

	* lib/meas/hadron/pions_follana_s.cc: Tidyed and committed things
	  with Eduardo's stuff

2003-10-23 11:28  bjoo

	* lib/Makefile, lib/Makefile.am, lib/io/follana_io_s.cc,
	  lib/io/follana_io_s.h, lib/meas/hadron/mesphas_follana_s.cc,
	  lib/meas/hadron/mesphas_follana_s.h,
	  lib/meas/hadron/pions_follana_s.cc,
	  lib/meas/hadron/pions_follana_s.h, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_follana_pion_s.cc,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4: Added Eduardo's
	  routine for computing his staggered phase factors alpha and beta,
	  as well as routines to compute all 16 pions

2003-10-23 05:46  bjoo

	* aclocal.m4, configure, lib/Makefile.am,
	  mainprogs/tests/t_follana_io_s.cc: Moved follana_io files to be
	  staggered specific. Remade Makefile.ins appropriately

2003-10-23 05:44  bjoo

	* lib/io/: follana_io.cc, follana_io.h, follana_io_s.cc,
	  follana_io_s.h: Moved follana_io files to be staggered specific

2003-10-21 23:22  edwards

	* include/: chroma_scalarsite_dwdefs.h, chromabase.h: Changed to
	  use DW index.

2003-10-20 16:59  edwards

	* lib/meas/smear/sink_smear2_w.cc: Removed uncessary include files.

2003-10-20 16:54  edwards

	* mainprogs/main/propagator.cc: Added some dwf tests.

2003-10-20 16:34  edwards

	* lib/io/qprop_io.cc: Removed primitives.h and qdp_util.h

2003-10-20 16:34  edwards

	* mainprogs/tests/t_ldwfdslash.cc: DWF test code.

2003-10-20 16:33  edwards

	* lib/update/molecdyn/dsdu/unprec_dwf_dsdu_w.cc: Added hook for DWF
	  dsdu

2003-10-20 16:31  edwards

	* lib/actions/ferm/: fermacts/fermacts.h,
	  fermacts/unprec_dwf_fermact_w.cc,
	  fermacts/unprec_dwf_fermact_w.h,
	  fermacts/unprec_wilson_fermact_w.cc,
	  fermacts/unprec_wilson_fermact_w.h,
	  fermacts/zolotarev4d_fermact_w.cc,
	  fermacts/zolotarev4d_fermact_w.h, invert/invcg2.cc,
	  invert/invcg2.h, invert/minvcg.h, linop/ldwfdslash_w.cc,
	  linop/ldwfdslash_w.h, linop/linop.h, linop/lmdagm_w.h,
	  linop/lmpsim_w.h, linop/lovddag_w.h, linop/lovlapms_w.h,
	  linop/lwldslash_w.cc, linop/lwldslash_w.h,
	  linop/lwldslash_w_sse.h, linop/overlapbu_linop_w.h,
	  linop/unprec_dwf_linop_w.cc, linop/unprec_dwf_linop_w.h,
	  linop/unprec_wilson_linop_w.h, linop/zolotarev4d_linop_w.cc,
	  linop/zolotarev4d_linop_w.h: Made all fermacts and linops
	  templatized now. The derived types are fixed to specific fermion
	  types - e.g., LatticeFermion or LatticeDWFermion.

2003-10-20 16:30  edwards

	* lib/actions/ferm/qprop/unprec_qprop_w.h: Added warning - not
	  currently used.

2003-10-20 16:29  edwards

	* lib/actions/ferm/qprop/unprec_qprop_w.h: Not currently used
	  include file form.

2003-10-20 16:29  edwards

	* lib/actions/ferm/qprop/unprec_qprop_w.cc: Changed to template.
	  Now provide specific instantiations for fixed fermion types.

2003-10-20 16:26  edwards

	* mainprogs/tests/t_lwldslash.cc: Throw away result for timings.

2003-10-20 16:25  edwards

	* mainprogs/tests/Makefile.am: Added t_ldwfdslash.

2003-10-20 16:25  edwards

	* include/primitives.h: Commented out INVERTER types. Now an enum.

2003-10-20 16:24  edwards

	* include/: fermact.h, linearop.h: Templatized all fermacts.

2003-10-20 16:24  edwards

	* include/common_declarations.h: Commented out InvType.

2003-10-20 16:23  edwards

	* include/chromabase.h: Added include of now chroma specific types.

2003-10-20 16:23  edwards

	* include/: chroma_scalarsite_defs.h, chroma_scalarsite_dwdefs.h:
	  Two versions with DWF.

2003-10-20 16:18  edwards

	* aclocal.m4, configure: Induced changes.

2003-10-20 16:18  edwards

	* lib/Makefile.am: Added new DWF functions.

2003-10-17 23:21  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Changed ND to Nd.

2003-10-15 21:41  edwards

	* lib/io/: readmilc.cc, readszin.cc, readszinferm_w.cc,
	  readszinqprop_w.cc, writemilc.cc, writeszin.cc,
	  writeszinqprop_w.cc: Changed all read/pokeSite and peekSite/read
	  combos to use single site versions of lattice read/write.

2003-10-15 21:40  edwards

	* mainprogs/main/cfgtransf.cc: Changed archive format to use a
	  header. Added some dumping of input gauge xml.

2003-10-15 20:44  edwards

	* mainprogs/main/cfgtransf.cc: Added writeArchiv.

2003-10-15 18:10  edwards

	* aclocal.m4, configure: Induced changes.

2003-10-15 18:10  edwards

	* mainprogs/main/cfgtransf.cc: Added writeArchiv.

2003-10-15 18:09  edwards

	* mainprogs/tests/Makefile.am: Moved t_formfac to extra_programs
	  for now.

2003-10-15 18:03  edwards

	* include/chromainc.h: Added qdp_iogauge.h

2003-10-15 18:03  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Removed qdp.h and
	  qdp_iogauge.h

2003-10-15 18:03  edwards

	* mainprogs/main/make_source.cc: Moved qdp_iogauge.h to chromainc.h

2003-10-15 17:59  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Changed include
	  qdp_util.h to qdp_iogauge.h

2003-10-15 17:57  edwards

	* mainprogs/main/make_source.cc: Added include of qdp_iogauge.h

2003-10-14 13:43  edwards

	* mainprogs/main/bar3ptfn.cc: Changed from writing XML from the
	  FormFac routine to a binary file!!!

2003-10-14 13:42  edwards

	* lib/meas/hadron/: formfac_w.cc, formfac_w.h: Switched to handing
	  a structure back and forth from FormFac instead of XML !!!

2003-10-14 13:41  edwards

	* lib/: io/follana_io.cc, io/qprop_io.cc, io/qprop_io.h,
	  io/readmilc.cc, io/readszin.cc, io/writemilc.cc, io/writeszin.cc,
	  meas/hadron/barcomp_w.cc, meas/hadron/barcomp_w.h,
	  meas/hadron/formfac_w.cc, meas/hadron/formfac_w.h: Changed all
	  read(BinaryReader, multi1d) to  read(BinaryReader, multi1d,
	  array_size) in old cases. In new cases, like formfac, now can let
	  the read/write record the size of the array in *binary*. Removed
	  old uses of common_io.h and put relevant stuff in qprop_io.h

2003-10-14 13:39  edwards

	* include/common_io.h: Moved relevant bigs of common_io.h to
	  lib/io/qprop_io.h.  Now get rid of this old szin legacy.

2003-10-14 13:39  edwards

	* include/chromainc.h: Removed common_io.h

2003-10-10 13:53  edwards

	* tests/spectrum_w/: spectrum_w_v7.linux-scalar-intel.xml.gz,
	  spectrum_w_v7.xml.ini: Fixed input to have missing time_rev
	  input. Bug fix in baryon_w.cc caused new (and verified) output.

2003-10-10 13:50  edwards

	* mainprogs/main/spectrum_w.cc: Removed some extraneous debugging.

2003-10-10 13:48  edwards

	* mainprogs/main/spectrum_w.cc: Added missing time_rev for this
	  version of input_io. Other small tweaks.

2003-10-10 13:22  edwards

	* lib/meas/hadron/baryon_w.cc: Bug fix!! The ordering of the
	  bardisp1.size?() was wrong - the num_baryons was too big! Fixed.

2003-10-10 13:04  edwards

	* mainprogs/main/hypsmear.cc: Added timings.

2003-10-10 00:33  edwards

	* mainprogs/main/cfgtransf.cc: Bug fix. Move declaration of "u"
	  after Layout call.

2003-10-10 00:30  edwards

	* mainprogs/main/cfgtransf.cc: Moved initialization of Layout.

2003-10-10 00:13  edwards

	* mainprogs/main/cfgtransf.cc: Small tweaks.

2003-10-09 23:46  edwards

	* include/fermact.h, include/gaugeact.h, lib/actions/boson/boson.h,
	  lib/actions/boson/operator/klein_gord.h, lib/actions/ferm/ferm.h,
	  lib/actions/ferm/dslash/dslash.h,
	  lib/actions/ferm/dslash/dslashm_w.h,
	  lib/actions/ferm/fermacts/fermacts.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/fermacts/zolotarev4d_fermact_w.h,
	  lib/actions/ferm/invert/invcg2.h,
	  lib/actions/ferm/invert/invert.h,
	  lib/actions/ferm/invert/invmr.h,
	  lib/actions/ferm/invert/minvcg.h, lib/actions/ferm/linop/linop.h,
	  lib/actions/ferm/linop/lmdagm_w.h,
	  lib/actions/ferm/linop/lmpsim_w.h,
	  lib/actions/ferm/linop/lovddag_w.h,
	  lib/actions/ferm/linop/lovlapms_w.h,
	  lib/actions/ferm/linop/overlapbu_linop_w.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.h,
	  lib/actions/ferm/linop/zolotarev4d_linop_w.h,
	  lib/actions/gauge/gauge.h, lib/io/readmilc.h, lib/io/readszin.h,
	  lib/io/readszinferm_w.cc, lib/io/readszinferm_w.h,
	  lib/io/readszinqprop_w.cc, lib/io/readszinqprop_w.h,
	  lib/io/writemilc.h, lib/io/writeszin.h,
	  lib/io/writeszinqprop_w.cc, lib/io/writeszinqprop_w.h,
	  lib/meas/meas.h, lib/meas/eig/eig.h, lib/meas/gfix/gfix.h,
	  lib/meas/glue/glue.h, lib/meas/glue/mesplq.h,
	  lib/meas/glue/polylp.h, lib/meas/hadron/D_j_w.h,
	  lib/meas/hadron/DjDk_w.h, lib/meas/hadron/barcomp_w.h,
	  lib/meas/hadron/baryon_w.h, lib/meas/hadron/curcor2_w.h,
	  lib/meas/hadron/formfac_w.h, lib/meas/hadron/hadron_w.h,
	  lib/meas/hadron/mesons_w.h, lib/meas/hadron/srcfil.h,
	  lib/meas/pbp/pbp.h, lib/meas/schrfun/schrfun.h,
	  lib/meas/smear/ape_smear.h, lib/meas/smear/gaus_smear.h,
	  lib/meas/smear/hyp_smear.cc, lib/meas/smear/hyp_smear.h,
	  lib/meas/smear/laplacian.h, lib/meas/smear/sink_smear2_w.h,
	  lib/meas/smear/smear.h, lib/util/util.h,
	  lib/util/gauge/su3proj.cc, lib/util/gauge/sun_proj.cc,
	  mainprogs/main/qqq_w.cc, mainprogs/tests/t_wlinvcg.cc: Removed
	  dos-isms.

2003-10-09 23:41  edwards

	* aclocal.m4, configure: Induced changes.

2003-10-09 23:40  edwards

	* mainprogs/main/cfgtransf.cc: Initial version of many-to-many
	  gauge format manipulator.

2003-10-09 23:39  edwards

	* mainprogs/main/Makefile.am: Added cfgtransf

2003-10-09 18:24  edwards

	* mainprogs/main/make_source.cc: Ifdef'd out debugging of SciDAC
	  output format.

2003-10-09 17:07  tag chroma1-0-1

2003-10-09 17:07  edwards

	* NEWS: News on 1.0.1

2003-10-09 17:06  edwards

	* lib/: actions/ferm/linop/overlapbu_linop_w.cc,
	  meas/smear/sink_smear2_w.cc, util/gauge/reunit.cc,
	  util/gauge/sun_proj.cc: Changed all cerr/cout to
	  QDPIO::cerr/cout.

2003-10-09 17:04  edwards

	* lib/meas/smear/ape_smear.cc: Changed cout to QDPIO::cout

2003-10-09 17:03  edwards

	* lib/: actions/ferm/invert/invcg2.cc,
	  actions/ferm/linop/lwldslash_w_sse.cc, io/follana_io.cc: Changed
	  uses of primaryNode() and cout to just QDPIO::cout.

2003-10-09 16:36  edwards

	* mainprogs/tests/: t_ape_smear.cc, t_conslinop.cc,
	  t_follana_io_s.cc, t_formfac.cc, t_hypsmear.cc, t_io.cc,
	  t_lwldslash.cc, t_lwldslash_sse.cc, t_mesons_w.cc, t_mesplq.cc,
	  t_overbu.cc, t_wlinvcg.cc: Changed all cout/cerr to
	  QDPIO::cout/cerr. Changed QDP_info calls to QDPIO::cout.

2003-10-09 16:32  edwards

	* mainprogs/main/: ExampleBuildingBlocks.cc, bar3ptfn.cc,
	  hypsmear.cc, make_source.cc, propagator.cc, spectrum_w.cc:
	  Changed all cout/cerr to QDPIO::cout/cerr. Change QDP_info calls
	  to use QDPIO::cout.

2003-10-09 14:39  dgr

	* tests/hypsmear/: XMLDAT, hypsmear_v1.xml.ini: Test routines for
	  "hypsmear"

2003-10-09 14:37  dgr

	* mainprogs/main/: Makefile.am, hypsmear.cc: Added "hypsmear" to
	  mainprogs/main with the option to "truncate" the lattice

2003-10-09 12:09  edwards

	* configure: Induced changes.

2003-10-09 12:08  edwards

	* lib/Makefile.am: Added readmilc.cc, writemilc.cc, milc_io.cc

2003-10-09 12:08  edwards

	* lib/io/: io.h, writemilc.cc, writemilc.h: Added milc writer
	  routines.

2003-10-09 12:07  edwards

	* lib/io/readmilc.cc: Removed extraneous comments.

2003-10-09 11:45  edwards

	* lib/io/: io.h, milc_io.cc, milc_io.h, readmilc.cc, readmilc.h:
	  Added MILC IO routines.

2003-10-09 11:09  edwards

	* lib/io/readszin.cc: Changed names in END_CODE statements.

2003-10-08 14:55  edwards

	* configure: Induced changes.

2003-10-08 14:54  edwards

	* lib/util/gauge/: rgauge.cc, rgauge.h: Added convenience function
	  for rgauge - does not return gauge transf matrices.

2003-10-08 14:54  edwards

	* mainprogs/tests/t_mesplq.cc: Added polyakov loop and random gauge
	  transf test.

2003-10-08 14:42  edwards

	* lib/meas/glue/polylp.cc: Small cleanup.

2003-10-08 14:40  edwards

	* lib/meas/glue/: glue.h, polylp.cc, polylp.h: Added polylp.

2003-10-08 14:38  edwards

	* aclocal.m4: Induced changes.

2003-10-08 14:38  edwards

	* lib/Makefile.am: Added polylp.cc

2003-10-08 12:01  edwards

	* lib/io/: writeszin.cc, writeszin.h: Added a writeSzinTrunc.

2003-10-08 12:00  edwards

	* lib/io/szin_io.cc: Changed default spec_acc.

2003-10-08 12:00  edwards

	* lib/io/readszin.cc: Changed to using a default init call of
	  SzinHeader.

2003-10-08 00:37  edwards

	* lib/io/: readszin.cc, readszin.h, writeszin.cc, writeszin.h:
	  Changed szin gauge reader/writers to use a structure which can be
	  casted into an xmlreader/writer.

2003-10-07 23:45  edwards

	* aclocal.m4, configure: Induced changes.

2003-10-07 23:45  edwards

	* lib/io/: szin_io.cc, szin_io.h: Seem to work. Reader/writer for
	  szin gauge headers.

2003-10-07 23:44  edwards

	* lib/io/io.h: Added szin_io.h

2003-10-07 23:43  edwards

	* lib/Makefile.am: Added szin_io.cc

2003-10-07 22:30  edwards

	* lib/io/: szin_io.cc, szin_io.h: Not functioning versions of
	  header reader/writers.

2003-10-07 22:01  edwards

	* tests/t_ape_smear/t_ape_smear.linux-scalar-intel.xml: Regression
	  test for APE smearing

2003-10-07 21:59  edwards

	* mainprogs/tests/t_ape_smear.cc: Test of APE smearing code.

2003-10-07 21:58  edwards

	* mainprogs/tests/Makefile.am: Added t_ape_smear

2003-10-07 21:39  edwards

	* lib/meas/smear/ape_smear.h: Fixed doxygen comments.

2003-10-07 21:29  tag chroma1-0-0

2003-10-07 21:29  edwards

	* INSTALL: Shortened and brought up to date.

2003-10-07 21:05  edwards

	* NEWS: Info on 1.0.0 .

2003-10-07 21:04  edwards

	* configure: Induced changes.

2003-10-07 21:02  edwards

	* configure.ac: Changed to version 1.0

2003-10-07 13:46  edwards

	* tests/spectrum_w/: spectrum_w_v6.linux-scalar-intel.xml.bz2,
	  spectrum_w_v6.linux-scalar-intel.xml.gz: Changed from bz2 to gz
	  format since libxml can read gz.

2003-10-07 13:41  edwards

	* tests/bar3ptfn/: bar3ptfn_v4.linux-scalar-intel.xml.bz2,
	  bar3ptfn_v4.linux-scalar-intel.xml.gz: Changed from bz2 format to
	  gz format. Less efficient, but libxml can read gz files.

2003-10-06 17:15  edwards

	* mainprogs/main/bar3ptfn.cc: Use new input format.

2003-10-02 15:07  edwards

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h: Added public
	  keyword.

2003-10-02 14:14  edwards

	* tests/propagator/propagator_v1.xml.ini: Added propagator test.

2003-10-02 13:19  edwards

	* include/common_declarations.h: Set default inverter.

2003-10-02 12:52  edwards

	* mainprogs/main/propagator.cc: Reorg xml

2003-10-01 23:32  edwards

	* lib/util/gauge/unit_check.cc: Small fix.

2003-10-01 23:30  edwards

	* lib/Makefile.am: Added unit_check

2003-10-01 23:26  edwards

	* lib/util/gauge/: gauge.h, unit_check.cc, unit_check.h: Added
	  unit_check

2003-10-01 21:21  edwards

	* mainprogs/main/spectrum_w.cc: Small tweaks. Changed input group
	  to be program dependent.

2003-10-01 21:20  edwards

	* tests/spectrum_w/: spectrum_w_v7.linux-scalar-intel.xml.gz,
	  spectrum_w_v7.xml.ini: Regression tests for version 7.

2003-10-01 16:23  edwards

	* mainprogs/main/spectrum_w.cc: Now supports baryons and currents.
	  Changed reading to use a structure. Pushed all control vars to
	  this structure.

2003-10-01 16:23  edwards

	* lib/meas/hadron/curcor2_w.cc: Fixed push(xml) stuff.

2003-10-01 16:23  edwards

	* lib/meas/hadron/baryon_w.cc: Small change in the name of an xml
	  output var.

2003-09-30 23:50  edwards

	* lib/Makefile.am.~1.29.~: Not sure why this got in here - remove
	  it.

2003-09-30 23:03  edwards

	* lib/meas/hadron/: baryon_w.cc, baryon_w.h: Fixed up. Now have an
	  xml front-end. Also have added new unpolarized protons from szin.

2003-09-30 23:02  edwards

	* lib/meas/hadron/curcor2_w.cc: Changed a 0.5 to really 0.5 .

2003-09-30 23:01  edwards

	* lib/meas/hadron/mesons_w.cc: Removed extraneous include.

2003-09-30 22:59  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Added include of
	  assert.h

2003-09-30 22:51  edwards

	* mainprogs/main/make_source.cc: Bug fix - removed old use of
	  ReadPath.

2003-09-30 17:01  edwards

	* lib/Makefile.am: Added curcor2_w.cc

2003-09-30 17:01  edwards

	* lib/meas/hadron/curcor2_w.cc: Fixed up. Now compiles.

2003-09-29 17:32  edwards

	* aclocal.m4, configure: Induced changes.

2003-09-29 17:32  edwards

	* lib/Makefile.am: Added a commented out curcor2_w.cc

2003-09-29 17:31  edwards

	* lib/meas/hadron/: curcor2_w.cc, curcor2_w.h, hadron_w.h: Added
	  curcor2_w.{h,cc}

2003-09-29 17:31  edwards

	* lib/meas/hadron/mesons_w.cc: Tiny cosmetic change.

2003-09-25 18:23  edwards

	* aclocal.m4, other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  other_libs/intel_sse_wilson_dslash/configure, configure: Induced
	  changes.

2003-09-25 18:21  edwards

	* lib/meas/smear/: ape_smear.cc, ape_smear.h, smear.h: Added APE
	  smearing routines.

2003-09-25 18:21  edwards

	* lib/Makefile.am: Added szin prop and gauge writers.

2003-09-25 18:20  edwards

	* lib/io/: io.h, writeszin.cc, writeszin.h, writeszinqprop_w.cc,
	  writeszinqprop_w.h: Added szin gauge and prop writers.

2003-09-25 18:20  edwards

	* lib/io/readszinqprop_w.h: Fixed includes.

2003-09-23 15:10  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Changed to use sites/node, so
	  then megaflops are per node.

2003-09-23 14:50  edwards

	* tests/t_lwldslash_sse/input.xml: Removed input of iter.

2003-09-23 14:49  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Now tests how long it should
	  run tests and adjusts the "iter" count accordingly.  IMPORTANT:
	  throws away return value for timing tests!!

2003-09-23 14:28  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Corrected flop count.

2003-09-23 14:07  edwards

	* mainprogs/tests/t_lwldslash_sse.cc: Removed some miscellaneous
	  includes.

2003-09-23 04:49  bjoo

	* other_libs/intel_sse_wilson_dslash/: configure,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c: Fixed 64bit funny

2003-09-22 16:59  bjoo

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: Added modifications

2003-09-22 16:59  bjoo

	* other_libs/intel_sse_wilson_dslash/: configure, configure.ac,
	  examples/t_dslash.c, examples/test.h, include/sse_config.h.in,
	  src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  src/scalar/shift_tables.c,
	  src/scalar/32bit/dslash/sse_su3dslash_w.c,
	  src/scalar/64bit/dslash/sse_su3dslash_w.c,
	  src/scalar/packer/nopad/packer.c,
	  src/scalar/packer/nopad/qdp_packer.cc,
	  src/scalar/packer/p4_pad/packer.c,
	  src/scalar/packer/p4_pad/qdp_packer.cc: Scalar Targets added

2003-09-17 12:27  bjoo

	* lib/actions/ferm/linop/lwldslash_w_sse.cc: SSE Dslash now guards
	  against odd sublattices

2003-09-17 11:15  bjoo

	* mainprogs/tests/t_lwldslash_sse.cc: SSE Now Works in DP

2003-09-17 10:39  bjoo

	* mainprogs/tests/t_lwldslash_sse.cc,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c:
	  Double Prec SSE2 works now, if you get the alignment right
	  accidentally. Next step is to ensure this happens automatically

2003-09-17 07:52  bjoo

	* other_libs/intel_sse_wilson_dslash/: configure, configure.ac:
	  Added debuggery option to configure to allow debugging with
	  chroma

2003-09-17 06:35  bjoo

	* aclocal.m4, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: Added extra dependency on other libs
	  to targets in mainprogs/test and mainprogs/main. So if you muck
	  with the code in the other libs, this dependency should get
	  picked up when you build apps

2003-09-17 05:43  bjoo

	* other_libs/intel_sse_wilson_dslash/: examples/Makefile.am,
	  examples/t_dslash.c, examples/test.h,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c: Cosmetics

2003-09-17 05:34  bjoo

	* other_libs/intel_sse_wilson_dslash/: examples/t_dslash.c,
	  examples/test.h, include/sse_config.h.in,
	  src/parscalar/packer/nopad/packer.c: Checked double precision
	  t_dslash. Runs without segfault. Segfaults must come from Chroma
	  integration

2003-09-17 05:05  bjoo

	* other_libs/intel_sse_wilson_dslash/: aclocal.m4, configure,
	  configure.ac: Changed packer for P3 single precision target

2003-09-16 09:53  bjoo

	* aclocal.m4, lib/Makefile,
	  other_libs/intel_sse_wilson_dslash/aclocal.m4,
	  tests/t_lwldslash_sse/input.xml: P4, 32 bit DSLASH works

2003-09-16 09:47  bjoo

	* lib/actions/ferm/linop/dslash_w.h: Added dslash_w.h file, to
	  switch in the right WilsonDslash class

2003-09-16 09:38  bjoo

	* lib/actions/ferm/linop/linop.h,
	  lib/actions/ferm/linop/lmpsim_w.h,
	  lib/actions/ferm/linop/lwldslash_w.cc,
	  lib/actions/ferm/linop/lwldslash_w.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  lib/actions/ferm/linop/unprec_wilson_linop_w.h,
	  mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_sse.cc,
	  other_libs/intel_sse_wilson_dslash/config.log,
	  other_libs/intel_sse_wilson_dslash/configure,
	  other_libs/intel_sse_wilson_dslash/configure.ac,
	  other_libs/intel_sse_wilson_dslash/include/sse64.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_align.h,
	  other_libs/intel_sse_wilson_dslash/include/sse_config.h.in,
	  other_libs/intel_sse_wilson_dslash/lib/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/nopad/qdp_packer.cc,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/packer/p4_pad/qdp_packer.cc:
	  P4 Intel SSE Dslash now works on my laptop

2003-09-13 07:03  bjoo

	* mainprogs/tests/t_lwldslash_sse.cc,
	  tests/t_lwldslash_sse/input.xml: Added t_lwldslash_sse directory
	  and sample input file for t_lwldslash_sse

2003-09-13 06:30  bjoo

	* mainprogs/tests/: t_lwldslash.cc, t_lwldslash_sse.cc: Fixed
	  performance measurements

2003-09-13 05:48  bjoo

	* lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  mainprogs/tests/t_lwldslash_sse.cc: 32 Bit SSE Dslash Seems to
	  work now except we hit some funny when the lattice size is
	  4x4x4x4. I am also suspicious about the naive Dslash
	  implementation

2003-09-12 12:21  bjoo

	* lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  mainprogs/tests/t_lwldslash_sse.cc,
	  other_libs/intel_sse_wilson_dslash/src/parscalar/32bit/dslash/sse_su3dslash_w.c:
	  SSE Dslash still broken -- but progress made

2003-09-12 09:03  bjoo

	* configure, configure.ac, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_lwldslash.cc,
	  mainprogs/tests/t_lwldslash_sse.cc: Can now link t_lwldslash_sse

2003-09-12 08:21  bjoo

	* mainprogs/tests/t_lwldslash.cc: Changed t_lwldslash to measure
	  performance

2003-09-12 00:31  edwards

	* lib/meas/smear/: ape_smear.cc, ape_smear.h: APE smearing routine.

2003-09-11 13:02  bjoo

	* lib/Makefile: Commit for the day

2003-09-11 12:57  bjoo

	* lib/Makefile, lib/Makefile.am, lib/meas/hadron/mesphas_s.cc,
	  lib/meas/hadron/mesphas_s.h, mainprogs/tests/t_follana_io_s.cc:
	  Commit for the day

2003-09-11 12:34  edwards

	* lib/Makefile.am: Fixed sse include path to be  top_builddir
	  instead of  top_srcdir

2003-09-11 12:10  bjoo

	* lib/Makefile, lib/io/follana_io.cc,
	  mainprogs/tests/t_follana_io_s.cc: Reader of Eduardos propagator
	  works in parallel mode (over MPICH running as separate processes
	  on one machine). It is very slow, but may work better on a real
	  parallel machine. Still gets right answer

2003-09-11 11:27  edwards

	* mainprogs/main/bar3ptfn.cc: Turned on some flush's.

2003-09-11 11:25  edwards

	* mainprogs/main/bar3ptfn.cc: Added some diagnostic output.

2003-09-11 11:17  edwards

	* mainprogs/main/bar3ptfn.cc: Added try/catch to DATA readers.

2003-09-11 09:08  bjoo

	* mainprogs/tests/t_follana_io_s.cc: Eduardos io test now works
	  fine on scalar machines

2003-09-11 08:31  bjoo

	* mainprogs/tests/t_follana_io_s.cc: Reads prop and computes
	  goldstone in staggered

2003-09-11 07:12  bjoo

	* lib/Makefile, lib/Makefile.am, lib/actions/ferm/linop/linop.h,
	  lib/io/follana_io.cc, lib/io/follana_io.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_follana_io_s.cc:
	  Added in Eduardos own prop reader for testing, modified automake
	  plumbing appropriately

2003-09-10 22:25  edwards

	* lib/actions/ferm/linop/linop.h: Commented out sse stuff.

2003-09-10 21:50  edwards

	* lib/Makefile.am: Rearranged makefile to new format. Got rid of
	  wilson/staggered specific macro vars.

2003-09-10 21:24  edwards

	* lib/meas/hadron/BuildingBlocks_w.cc: Fixed up some includes.

2003-09-10 21:21  edwards

	* lib/meas/hadron/: BuildingBlocks_w.cc, BuildingBlocks_w.h: Fixed
	  to include proper chroma includes.

2003-09-10 20:46  edwards

	* mainprogs/main/: ExampleBuildingBlocks.cc, make_source.cc,
	  propagator.cc, qqq_w.cc: Changed to exit(0) instead of return 0

2003-09-10 20:46  edwards

	* mainprogs/tests/: t_conslinop.cc, t_dslashm.cc, t_formfac.cc,
	  t_hypsmear.cc, t_io.cc, t_lwldslash.cc, t_lwldslash_sse.cc,
	  t_mesons_w.cc, t_mesplq.cc, t_overbu.cc, t_spprod.cc,
	  t_wlinvcg.cc: Changed all programs to exit(0) instead of return 0

2003-09-10 14:15  bjoo

	* aclocal.m4, configure, lib/Makefile, lib/Makefile.am,
	  lib/actions/ferm/linop/linop.h,
	  lib/actions/ferm/linop/lwldslash_w_sse.cc,
	  lib/actions/ferm/linop/lwldslash_w_sse.h,
	  mainprogs/tests/Makefile.am, mainprogs/tests/t_lwldslash_sse.cc,
	  other_libs/intel_sse_wilson_dslash/config.log: Merged in todays
	  glue

2003-09-10 14:04  edwards

	* mainprogs/main/: bar3ptfn.cc, spectrum_w.cc: Changed to new form
	  of XMLReader - a clone.

2003-09-10 10:49  bjoo

	* other_libs/intel_sse_wilson_dslash/: config.log, configure,
	  configure.ac, src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/packer/nopad/packer.c,
	  src/parscalar/packer/p4_pad/packer.c: ?

2003-09-10 10:37  bjoo

	* other_libs/intel_sse_wilson_dslash/include/sse_config.h.in:
	  Defines for building this library

2003-09-09 21:33  edwards

	* lib/util/gauge/rgauge.cc: Small fix.

2003-09-09 21:26  edwards

	* aclocal.m4, configure: Induced changes.

2003-09-09 21:26  edwards

	* lib/Makefile.am: Added rgauge.cc

2003-09-09 21:25  edwards

	* lib/util/gauge/: gauge.h, rgauge.cc, rgauge.h: Added rgauge.

2003-09-09 12:19  edwards

	* mainprogs/tests/t_wlinvcg.cc: Start at test for wilson inverter.

2003-09-04 14:40  edwards

	* other_libs/intel_sse_wilson_dslash/examples/test.h: Changed to
	  single node.

2003-09-04 14:30  edwards

	* other_libs/intel_sse_wilson_dslash/examples/: t_dslash.c, test.h:
	  Fixed t_dslash so that it now works. With the current make
	  structure, it is being compiled under g++.

2003-09-04 11:36  bjoo

	* configure, configure.ac, lib/Makefile,
	  mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am,
	  other_libs/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/config.log: Configuration now
	  works

2003-09-04 11:26  bjoo

	* other_libs/Makefile.am: Makefile for other libs

2003-09-04 11:05  bjoo

	* Makefile.am, configure, configure.ac, lib/Makefile,
	  lib/Makefile.am, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am,
	  other_libs/intel_sse_wilson_dslash/config.log: Now configures
	  level 3 -- barring some minor directory renamings

2003-09-04 09:31  bjoo

	* other_libs/intel_sse_wilson_dslash/: acinclude.m4, aclocal.m4,
	  configure, configure.ac, examples/Makefile.am, include/sse32.h,
	  include/sse64.h, lib/Makefile.am, src/parscalar/shift_tables.c,
	  src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/packer/nopad/packer.c,
	  src/parscalar/packer/p4_pad/packer.c: Added pointer casts. Now
	  compiles with g++ as well as gcc. Added --with-qdp option for
	  configuration with chroma

2003-09-02 11:52  edwards

	* mainprogs/main/: qqq_w.cc, spectrum_w.cc: Added return 0 at end
	  of main. Some kind of return is required in C++.

2003-09-02 11:50  edwards

	* mainprogs/tests/: t_conslinop.cc, t_dslashm.cc, t_hypsmear.cc,
	  t_io.cc, t_lwldslash.cc, t_mesplq.cc, t_overbu.cc: Added return 0
	  to end of every routine. This (or some kind of exit) is required
	  in C++.

2003-09-02 11:40  bjoo

	* Makefile.am, configure, configure.ac, lib/Makefile,
	  other_libs/intel_sse_wilson_dslash/config.log: Should now
	  configure SSE as other lib

2003-09-02 06:35  bjoo

	* other_libs/intel_sse_wilson_dslash/: config.log, configure,
	  configure.ac: Allowed confiure to set precision from env vars

2003-09-01 11:28  bjoo

	* other_libs/intel_sse_wilson_dslash/: config.log, configure,
	  configure.ac: Can handle --enable-precision=single and
	  --enable-precision=double now

2003-09-01 10:36  bjoo

	* other_libs/intel_sse_wilson_dslash/config/: config.guess,
	  config.sub, depcomp, install-sh, missing, mkinstalldirs: Automake
	  Files

2003-09-01 10:33  bjoo

	* other_libs/intel_sse_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  NEWS, README, acinclude.m4, Makefile.am, aclocal.m4, config.log,
	  configure, configure.ac, examples/Makefile.am, examples/rannyu.c,
	  examples/rannyu.h, examples/t_dslash.c, examples/t_wnxtwlcg.c,
	  examples/test.h, include/sse32.h, src/parscalar/shift_tables.c,
	  src/parscalar/32bit/cg/sse_cg_w.c,
	  src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/64bit/cg/sse_cg_w.c,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/packer/nopad/packer.c,
	  src/parscalar/packer/p4_pad/packer.c,
	  src/scalar/32bit/cg/sse_cg_w.c,
	  src/scalar/32bit/dslash/sse_su3dslash_w.c,
	  src/scalar/64bit/cg/sse_cg_w.c,
	  src/scalar/64bit/dslash/sse_su3dslash_w.c,
	  src/scalar/packer/nopad/packer.c,
	  src/scalar/packer/p4_pad/packer.c, include/sse64.h,
	  include/sse_align.h, lib/Makefile.am, lib/out: Initial Import

2003-09-01 10:33  bjoo

	* other_libs/intel_sse_wilson_dslash/: AUTHORS, COPYING, INSTALL,
	  NEWS, README, acinclude.m4, Makefile.am, aclocal.m4, config.log,
	  configure, configure.ac, examples/Makefile.am, examples/rannyu.c,
	  examples/rannyu.h, examples/t_dslash.c, examples/t_wnxtwlcg.c,
	  examples/test.h, include/sse32.h, src/parscalar/shift_tables.c,
	  src/parscalar/32bit/cg/sse_cg_w.c,
	  src/parscalar/32bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/64bit/cg/sse_cg_w.c,
	  src/parscalar/64bit/dslash/sse_su3dslash_w.c,
	  src/parscalar/packer/nopad/packer.c,
	  src/parscalar/packer/p4_pad/packer.c,
	  src/scalar/32bit/cg/sse_cg_w.c,
	  src/scalar/32bit/dslash/sse_su3dslash_w.c,
	  src/scalar/64bit/cg/sse_cg_w.c,
	  src/scalar/64bit/dslash/sse_su3dslash_w.c,
	  src/scalar/packer/nopad/packer.c,
	  src/scalar/packer/p4_pad/packer.c, include/sse64.h,
	  include/sse_align.h, lib/Makefile.am, lib/out: Initial revision

2003-08-28 18:06  ikuro

	* include/common_io.h, lib/io/qprop_io.cc,
	  mainprogs/main/make_source.cc, mainprogs/main/propagator.cc,
	  tests/make_source/make_source_v2.xml.ini: [no log message]

2003-08-27 23:48  edwards

	* mainprogs/main/make_source.cc: A start at a scidac format for
	  props.

2003-08-27 23:09  edwards

	* tests/make_source/make_source_v2.xml.ini: Sample input file for
	  make_source.

2003-08-27 23:07  edwards

	* mainprogs/main/make_source.cc: More cleanups. Seems to work.

2003-08-27 18:08  edwards

	* lib/io/qprop_io.cc, lib/io/qprop_io.h, lib/io/readszin.cc,
	  lib/io/readszin.h, lib/io/readszinqprop_w.cc,
	  lib/io/readszinqprop_w.h,
	  mainprogs/main/ExampleBuildingBlocks.cc,
	  mainprogs/main/bar3ptfn.cc, mainprogs/main/make_source.cc,
	  mainprogs/main/spectrum_w.cc, mainprogs/tests/t_formfac.cc: Start
	  major push to using xml.

2003-08-27 16:19  edwards

	* lib/io/readszin.cc: Bug fix. Had still an xml param in the
	  convenience function.

2003-08-27 16:19  edwards

	* mainprogs/main/ExampleBuildingBlocks.cc: Made gauge readers
	  return an xml header.

2003-08-27 16:18  edwards

	* lib/io/: readszin.cc, readszin.h: Added a convenience function
	  that throws away xml header.

2003-08-27 16:05  edwards

	* mainprogs/main/spectrum_w.cc: Removed use of seed. Do not need
	  random numbers here.

2003-08-27 16:04  edwards

	* mainprogs/main/bar3ptfn.cc: Changed readSzin to return an xml
	  header.

2003-08-27 16:01  edwards

	* mainprogs/main/qqq_w.cc: Changed readers to return an xml header.

2003-08-27 15:58  edwards

	* lib/io/: readszin.cc, readszin.h: Changed to always return a XML
	  header.

2003-08-20 07:33  bjoo

	* lib/: Makefile.am, meas/meas.h, meas/hadron/BuildingBlocks_w.cc,
	  meas/hadron/D_j_w.cc, meas/hadron/DjDk_w.cc,
	  meas/hadron/hadron.h, meas/hadron/hadron_w.h: Moved some files to
	  be wilson specific. Now compiles for both wilson and staggereed
	  libraries. Some mainprogs may still need to be identified as
	  wilson or staggered or both

2003-08-19 13:34  bjoo

	* lib/meas/sources/: d_src_w.cc, p_src_w.cc:
	  Fixed typos here

2003-08-19 13:19  bjoo

	* lib/meas/sources/: d_src.cc, d_src.h, d_src_w.cc, d_src_w.h,
	  p_src.cc, p_src.h, p_src_w.cc, p_src_w.h, sources.h, sources_w.h:
	  Renamed these to have _w extentions

2003-08-19 13:16  bjoo

	* lib/meas/hadron/BuildingBlocks.hh: Removed this... Made a typo
	  before

2003-08-19 13:15  bjoo

	* lib/meas/hadron/: BuildingBlocks.cc, BuildingBlocks_w.cc,
	  BuildingBlocks_w.h, D_j.cc, D_j.h, D_j_w.cc, D_j_w.h, DjDk.cc,
	  DjDk.h, DjDk_w.cc, DjDk_w.h:
	  Renamed files with _w extention

2003-08-12 23:01  edwards

	* lib/meas/hadron/mesphas_s.cc: Temporary file conversion from
	  szin.

2003-08-11 19:19  dru

	* mainprogs/main/Makefile.am: [no log message]

2003-08-11 19:09  dru

	* mainprogs/main/ExampleBuildingBlocks.cc:
	  The BuildingBlocks code is being moved from qdpdemo to chroma.
	  ExampleBuildingBlocks.cc was previously located in
	  qdpdemo/main/BuildingBlocks.

2003-08-11 18:00  dru

	* lib/meas/hadron/BuildingBlocks.cc:
	  Removed TimeSliceFunc.

2003-08-11 17:47  dru

	* lib/Makefile:
	  Still adding BuildingBlocks.

2003-08-11 17:40  dru

	* lib/Makefile:
	  Added BuildingBlocks.

2003-08-11 17:29  dru

	* lib/Makefile.am:
	  Added BuildingBlocks to generic sources list.  BuildingBlocks is
	  independent of the action.

2003-08-11 17:11  dru

	* lib/meas/hadron/hadron.h: [no log message]

2003-08-11 16:57  dru

	* lib/meas/hadron/BuildingBlocks.cc:
	  The BuildingBlocks code is being moved from qdpdemo to chroma.
	  BuildingBlocks.cc was previously located in
	  qdpdemo/main/BuildingBlocks.

2003-08-11 16:53  dru

	* lib/meas/hadron/BuildingBlocks.hh:
	  The BuildingBlocks code is being moved from qdpdemo to chroma.
	  BuildingBlocks.hh was previously located in
	  qdpdemo/main/BuildingBlocks.

2003-08-09 00:19  edwards

	* lib/meas/hadron/: barcomp_w.cc, baryon_w.cc: Changed Set to
	  UnorderedSet.

2003-08-09 00:18  edwards

	* lib/actions/ferm/: invert/invcg2.cc, invert/invmr.cc,
	  linop/lmdagm_w.h, linop/lmpsim_w.h, linop/lovddag_w.h,
	  linop/lovlapms_w.h, linop/lwldslash_w.h,
	  linop/overlapbu_linop_w.h, linop/unprec_wilson_linop_w.h,
	  linop/zolotarev4d_linop_w.h: Changed Subset to OrderedSubset.

2003-08-09 00:18  edwards

	* include/linearop.h: Changed Subset to  OrderedSubset	!!!

2003-08-08 23:57  edwards

	* lib/util/gauge/su2extract.cc: Typo on su2_index name.

2003-08-08 23:56  edwards

	* lib/util/gauge/: su2extract.cc, su2extract.h, sunfill.cc,
	  sunfill.h: Made Subset into an Unordered and Ordered versions
	  using a wrapper over a template.

2003-08-08 22:10  edwards

	* lib/util/ft/sftmom.h: Replaced Subset with UnorderedSubset .

2003-07-16 14:51  edwards

	* scripts/formfact_pion.pl: Quick and dirty pion formfactor.

2003-07-16 13:34  edwards

	* scripts/strip_spectrum_w.pl: Trimmed out some quotes from string
	  names

2003-07-04 13:08  edwards

	* mainprogs/main/bar3ptfn.cc: Added more Seq_src types.

2003-07-02 11:03  edwards

	* include/: chromabase.h, chromainc.h: Put in include guards.

2003-07-02 10:37  edwards

	* scripts/strip_spectrum_w.pl: Hacked to support buggy nml files.

2003-07-01 21:42  dru

	* include/chroma.h: added #ifndef CHROMA_INCLUDE ... to allow
	  multiple #include "chroma.h" statements

2003-07-01 14:55  dgr

	* scripts/strip_spectrum_w.pl: Inserted double-quotes into
	  definitions of WILSON and GAUGE_INV_GAUSSIAN variables, to ensure
	  compatibility with spectrum output

2003-06-25 12:18  edwards

	* tests/bar3ptfn/: bar3ptfn_v4.linux-scalar-intel.xml.bz2,
	  bar3ptfn_v4.xml.ini: Added xml tests.

2003-06-25 12:11  edwards

	* lib/meas/hadron/formfac_w.cc, lib/meas/hadron/formfac_w.h,
	  mainprogs/main/bar3ptfn.cc: Changed from nml to xml.

2003-06-23 23:33  edwards

	* tests/test_purgaug.cfg1: Test config from szin.

2003-06-23 23:31  edwards

	* tests/spectrum_w/: spectrum_w_v6.linux-scalar-intel.xml.bz2,
	  spectrum_w_v6.xml.ini: New xml test files.

2003-06-23 23:24  edwards

	* mainprogs/tests/t_mesons_w.cc, mainprogs/main/spectrum_w.cc,
	  lib/meas/hadron/mesons_w.cc, lib/meas/hadron/mesons_w.h: Changed
	  from nml to xml.

2003-06-23 17:02  edwards

	* scripts/strip_bar3ptfn.pl: Added mom2_max to config.pl .

2003-06-20 17:23  ikuro

	* mainprogs/main/: make_source.cc, propagator.cc: [no log message]

2003-06-20 16:48  dgr

	* lib/io/: readszinqprop_w.cc, readszinqprop_w.h: Added routines to
	  write propagators in SZIN format.

2003-06-20 16:47  dgr

	* mainprogs/main/: Makefile.am, make_source.cc: Added a simple
	  make_source routine that creates a source and writes it to disk
	  so that it can be read into, say, the SZIN solver

2003-06-20 15:57  edwards

	* scripts/strip_spectrum_w.pl: Changed qx,qy,qz to px,py,pz.

2003-06-20 14:49  edwards

	* scripts/strip_spectrum_w.pl: Changed mom2=0 case to not print
	  qx0_qy0_qz0.

2003-06-19 14:12  ikuro

	* lib/: Makefile.am, Makefile, Makefile.am.~1.29.~: [no log
	  message]

2003-06-19 13:45  ikuro

	* lib/meas/: hadron/DjDk.cc, hadron/DjDk.h, hadron/hadron.h,
	  sources/d_src.cc, sources/d_src.h, sources/sources.h: [no log
	  message]

2003-06-19 13:40  ikuro

	* lib/meas/smear/: laplacian.cc, laplacian.h: [no log message]

2003-06-19 13:34  ikuro

	* mainprogs/main/: propagator.cc, qqq_w.cc: [no log message]

2003-06-11 15:02  edwards

	* include/chromabase.h: Added qdp_util.h

2003-06-10 12:05  edwards

	* lib/io/readszin.cc: Bug fix. Still didn't get the banner/date
	  stuff correct. Use a new method.

2003-06-09 13:19  edwards

	* configure: Induced changes.

2003-06-09 13:13  edwards

	* configure.ac: Now grabs CXX from QDP++ config.

2003-06-08 01:00  edwards

	* mainprogs/main/: spectrum_w.cc, bar3ptfn.cc: Added some flush to
	  nml_out.

2003-05-29 22:37  flemingg

	* mainprogs/main/bar3ptfn.cc: A message printed to stdout was
	  printing the wrong thing cut and pasted from spectrum_w.cc.
	  Replaced with the intended thing from szin bar3ptfn.m

2003-05-29 22:28  flemingg

	* scripts/strip_bar3ptfn.pl: The stripper script only worked
	  correctly when sink_mom=0 because sink_mom is used as mom_offset
	  in the code.	The stripper now matches what the code does when
	  sink_mom != 0.

2003-05-27 13:45  ikuro

	* lib/: meas/smear/laplacian.cc, meas/smear/laplacian.h,
	  meas/smear/smear.h, Makefile.am: [no log message]

2003-05-23 01:06  edwards

	* lib/io/: qprop_io.cc, readszinferm_w.cc, readszinqprop_w.cc:
	  Removed spurious usage of QDP_END_NAMESPACE.

2003-05-23 00:58  edwards

	* lib/io/readszin.cc: Removed spurious QDP_END_NAMESPACE.

2003-05-23 00:57  edwards

	* lib/actions/boson/operator/klein_gord.cc: Changed include of
	  qdp.h to chrombase.h

2003-05-22 14:14  flemingg

	* tests/spectrum_w/: spectrum_w_v5.linux-scalar.nml,
	  spectrum_w_v6.linux-scalar.nml,
	  spectrum_w_v6.linux-scalar.nml.bz2: Replaced v5 and v6 of the
	  uncompressed spectrum_w namelist output file in lieu of the .bz2
	  compressed v6 output file.  Saves a factor of 10 in space.

2003-05-22 14:10  flemingg

	* tests/bar3ptfn/: bar3ptfn_v3.linux-scalar.nml,
	  bar3ptfn_v4.linux-scalar.nml.bz2: Replaced the v3 bar3ptfn
	  namelist output test file with a .bz2 compressed version of the
	  v4 test file.  Factor of ten smaller in space and no point in
	  having v3 and v4 in the repository since they only differ by the
	  one line which indicates the input version.

2003-05-22 13:35  flemingg

	* mainprogs/main/spectrum_w.cc, scripts/strip_spectrum_w.pl: Added
	  stripper for spectrum_w.  Also, minor change to spectrum_w.cc to
	  make it compatible with the stripper.

2003-05-14 02:07  flemingg

	* mainprogs/main/bar3ptfn.cc, tests/bar3ptfn/bar3ptfn_v4.ini:
	  Should be done playing around with the input and output formats
	  for bar3ptfn with this version.

2003-05-14 02:05  flemingg

	* tests/bar3ptfn/: bar3ptfn.linux-scalar.nml,
	  bar3ptfn_v3.linux-scalar.nml: renamed bar3ptfn.linux-scalar.nml
	  to bar3ptfn_v3.linux-scalar.nml

2003-05-14 02:00  flemingg

	* tests/bar3ptfn/: bar3ptfn.ini, bar3ptfn_v3.ini: renamed
	  bar3ptfn.ini to bar3ptfn_v3.ini

2003-05-13 18:00  flemingg

	* mainprogs/main/spectrum_w.cc, tests/spectrum_w/spectrum_w_v5.ini,
	  tests/spectrum_w/spectrum_w_v5.linux-scalar.nml,
	  tests/spectrum_w/spectrum_w_v6.ini,
	  tests/spectrum_w/spectrum_w_v6.linux-scalar.nml: I'm done with
	  spectrum_w and the test files for now. I'm happy enough with the
	  output format. Somebody please write a stripper.

2003-05-13 13:54  flemingg

	* tests/spectrum_w/: spectrum_w_v6.ini, version_6.ini: Renamed
	  version_6.ini to spectrum_w_v6.ini

2003-05-13 13:52  flemingg

	* tests/spectrum_w/: spectrum_w_v5.ini,
	  spectrum_w_v5.linux-scalar.nml: Added namelist output for
	  corresponding input file

2003-05-13 13:42  flemingg

	* tests/spectrum_w/: spectrum_w_v5.ini, version_5.ini: Renamed
	  version_5.ini to spectrum_w_v5.ini

2003-05-09 20:22  edwards

	* scripts/strip_bar3ptfn.pl: Support for chroma now. Only prints
	  realpart of 3-pt functions.

2003-05-09 19:22  edwards

	* scripts/strip_bar3ptfn.pl: Start of chroma bar3ptfn stripper.

2003-05-09 16:27  edwards

	* lib/io/: readszinferm_w.cc, readszinferm_w.h: Added szin fermion
	  reader.

2003-05-09 16:26  edwards

	* lib/io/io.h: Added readszinferm_w.h

2003-05-09 16:21  edwards

	* lib/Makefile.am: Added szin fermion reader.

2003-05-09 16:07  edwards

	* aclocal.m4, configure: Induced changes.

2003-05-09 16:07  edwards

	* mainprogs/tests/t_spprod.cc: Test spin-product.

2003-05-09 16:07  edwards

	* mainprogs/tests/Makefile.am: Added t_spprod.

2003-05-08 19:09  flemingg

	* tests/spectrum_w/: version_5.ini, version_6.ini: spectrum_w test
	  files based on the szin test.  Not fully tested yet.	Use input
	  config and prop files from szin tests.

2003-05-08 19:07  flemingg

	* tests/bar3ptfn/: bar3ptfn.ini, bar3ptfn.linux-scalar.nml: Added
	  bar3ptfn test files based on the szin bar3ptfn tests.  Need to
	  use the same configuration and propagator files as used in the
	  szin test.

2003-05-08 19:02  flemingg

	* mainprogs/main/spectrum_w.cc: Initial version of spectrum_w.	It
	  compiles and reproduces szin meson correlation functions up to a
	  sign.  Namelist input and output starting to evolve away from
	  szin model: a work in progress.  Code runs but more testing
	  needed including resolving the cause of the different signs.

2003-05-08 18:58  flemingg

	* mainprogs/main/bar3ptfn.cc: Now using 'enum WvfKind' defined in
	  lib/meas/smear/sink_smear2_w.h

2003-05-08 18:55  flemingg

	* lib/meas/smear/: sink_smear2_w.cc, sink_smear2_w.h: Incorporated
	  'enum WvfKind' into sink_smear2().

2003-05-08 18:53  flemingg

	* lib/io/readszin.cc: Got rid of DGR's HACK message. Problem is
	  supposed to be fixed.

2003-05-01 13:32  flemingg

	* mainprogs/main/bar3ptfn.cc: Added code to eliminate temporary
	  'LatticeComplex seq_hadron'.	It is currently commented out
	  awaiting a qdp++ update.

2003-04-30 17:25  edwards

	* mainprogs/main/: bar3ptfn.cc, propagator.cc, qqq_w.cc: Changed
	  all uses of char* to using string. Changed
	  readSzin2,readSzinQprop2 to readSzin,readSzinQprop.

2003-04-30 17:19  edwards

	* lib/io/: readszin.cc, readszin.h, readszinqprop_w.cc,
	  readszinqprop_w.h: Renamed readszin2 back to original readszin.
	  Similarly for readSzinQprop2 back to Qprop. Changed all char* to
	  const string&.

2003-04-30 02:11  flemingg

	* mainprogs/main/bar3ptfn.cc: Finally figured out what
	  Wilson_hadron_2Pt_fn measurement was supposed to do and made it
	  do it.  I realized that it didn't involve a timeslice sum at the
	  source but just the trace at the source point.  So, I removed all
	  the subset stuff and replaced it with a peekSite().  Now,
	  everything agrees with szin.	The code is ready for testing in
	  production.

2003-04-29 16:14  flemingg

	* mainprogs/main/bar3ptfn.cc: nml input/output streamlined to
	  eliminate some legacy key-value pairs which aren't currently
	  needed but could be readded later.  Output format was incremented
	  to version=4 and all the params were put into a single group.
	  Support for mom2_max was added.  Code for computing
	  "Wilson_hadron_2Pt_fn" was also added, but is is probably wrong
	  and certainly kludgy due to the subset construction, etc.

2003-04-29 16:09  flemingg

	* aclocal.m4, configure, mainprogs/tests/Makefile.am: Modified
	  mainprogs/tests/Makefile.am to move targets t_dslashm and
	  t_lwldslash from check_PROGRAMS to EXTRA_PROGRAMS temporarily
	  until the sources are fixed and the targets can compile.  This
	  way, only working targets are included in check_PROGRAMS.

2003-04-26 18:32  flemingg

	* lib/Makefile.am: Fixes one 'make dist' problem which is to not
	  try to put qdp++/include/defs.h into the chroma dist tarball.
	  However, this fix merely exposes a deeper problem which is how to
	  get all of the chroma include files into some include tree for
	  distribution.  Haven't figured out how to do that yet.

2003-04-26 02:09  flemingg

	* mainprogs/main/bar3ptfn.cc: Now uses NmlReader support for bool's
	  and string's.  Main limitations are that it still only allows
	  periodic boundary conditions for fermions and that mom2_max is
	  hard-coded to be 7, sort of matching szin.  Probably should add
	  something to be read from namelist input to allow a different
	  value of mom2_max.  Also, it might be nice to decide if we really
	  need to read in and write out a whole bunch of namelist key-value
	  pairs that are not used for anything else.  Now might be a good
	  time to clean up some accidents of history.

2003-04-25 23:49  flemingg

	* aclocal.m4, configure, mainprogs/main/Makefile.am,
	  mainprogs/main/bar3ptfn.cc: Initital check in of
	  mainprogs/main/bar3ptfn.cc.  Program will reproduce data in
	  szin/tests/bar3ptfn.	However, it is not quite ready for general
	  use.	In particular, the configuration name is not read correctly
	  from the nml input file because the NmlReader doesn't support C++
	  strings yet.	Also, only periodic boundary conditions are
	  implemented (i.e. no real work has been done on boundary
	  conditions yet, so only periodic works by default. At least, it
	  checks that the nml input says periodic.).  Finally,
	  "Wilson_hadron_2Pt_fn" was skipped.  Code was too ugly in szin to
	  think about but it is probably a one liner in QDP++ but I was too
	  lazy.

2003-04-25 16:46  flemingg

	* lib/meas/smear/sink_smear2_w.h: prototype was incorrect. fixed.

2003-04-24 16:57  edwards

	* aclocal.m4, configure: Induced changes.

2003-04-24 16:56  edwards

	* mainprogs/tests/t_overbu.cc: Added more tests.

2003-04-24 16:56  edwards

	* lib/actions/ferm/linop/overlapbu_linop_w.cc: Fixed usages of
	  isign from caller, usages of wldirac's isign.

2003-04-24 14:50  edwards

	* mainprogs/tests/t_overbu.cc: Test file for BU's overlap.

2003-04-24 14:50  edwards

	* mainprogs/tests/Makefile.am: Added t_overbu.cc

2003-04-24 14:48  edwards

	* lib/actions/ferm/linop/linop.h: Added overlapbu_linop_w.

2003-04-24 14:35  edwards

	* lib/Makefile.am: Added BU overlap.

2003-04-24 14:34  edwards

	* lib/actions/ferm/linop/: overlapbu_linop_w.cc,
	  overlapbu_linop_w.h: Added BU's variant of overlap.

2003-04-24 13:45  edwards

	* lib/actions/ferm/linop/unprec_wilson_linop_w.cc: Fixed comment.

2003-04-21 07:10  edwards

	* lib/actions/ferm/invert/invbicg.cc: A Bi-CG inverter.

2003-04-17 16:15  dgr

	* lib/Makefile.am: Changes associated with generalised baryon
	  correlators, and rearrangement of IO routines

2003-04-17 16:13  dgr

	* mainprogs/main/: Makefile.am, propagator.cc, qqq_w.cc: Added
	  generalised three-quark correlator

2003-04-17 16:12  dgr

	* lib/meas/hadron/: D_j.cc, D_j.h: Added routines associated with
	  derivative operators

2003-04-17 16:10  dgr

	* include/common_io.h: Added definitions of PropHead

2003-04-17 16:09  dgr

	* lib/io/: qprop_io.cc, qprop_io.h, readszin.cc: Moved the
	  definition of PropHead into common_io.h

2003-04-17 16:08  dgr

	* lib/meas/hadron/: barcomp_w.cc, barcomp_w.h, hadron.h: Included
	  some extra routines associated with qqq operators

2003-04-17 10:56  dgr

	* aclocal.m4, configure, mainprogs/main/propagator.cc: Added P-wave
	  sources to propagator.cc Reads in parameters from crude DATA file

2003-04-17 10:52  dgr

	* lib/Makefile.am: Additions associated with P-wave Sources

2003-04-17 10:50  dgr

	* lib/meas/: meas.h, sources/p_src.cc, sources/p_src.h,
	  sources/sources.h: Added the directory sources associated with P-
	  and D-wave propagator and operator construction

2003-04-14 12:35  edwards

	* lib/actions/ferm/invert/: invmr.cc, invmr.h: Ported over MR code
	  from SZIN.

2003-04-10 17:40  edwards

	* lib/actions/ferm/: fermacts/unprec_wilson_fermact_w.cc,
	  qprop/unprec_qprop_w.cc: Changed update to ncg_had to a write of
	  ncg_had.

2003-04-10 16:20  dgr

	* mainprogs/main/: Makefile.am, spectrum_w.cc: Changes associated
	  with adding a simple spectrum routine in main that can read in a
	  propagator generated with te qprop_io headers

2003-04-10 13:20  dgr

	* mainprogs/main/propagator.cc: Changes to propagator associated
	  with qprop_io

2003-04-10 13:16  dgr

	* lib/: Makefile.am, io/io.h, io/qprop_io.cc, io/qprop_io.h:
	  Addition of qprop_io

2003-04-09 17:14  edwards

	* include/fermact.h,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.cc,
	  lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  lib/actions/ferm/qprop/unprec_qprop_w.cc,
	  mainprogs/main/propagator.cc: Following conventions, changed
	  "Qprop" to qprop.

2003-04-09 17:11  edwards

	* lib/actions/ferm/fermacts/: unprec_wilson_fermact_w.cc,
	  unprec_wilson_fermact_w.h: HACK. For some unknown reason, must
	  have a copy of Qprop locally.

2003-04-09 17:00  edwards

	* mainprogs/main/propagator.cc: Compiles, but does not link.

2003-04-09 17:00  edwards

	* lib/actions/: actions.h, ferm/ferm.h: Fixed include paths.

2003-04-09 16:49  edwards

	* mainprogs/tests/t_conslinop.cc: Added define of MAIN

2003-04-09 16:48  edwards

	* aclocal.m4, configure: Induced changes.

2003-04-09 16:48  edwards

	* lib/Makefile.am: Added  unprec_wilson_dsdu_w.cc

2003-04-09 16:47  edwards

	* lib/update/molecdyn/dsdu/unprec_wilson_dsdu_w.cc: Hacked to get
	  to compile. Not working yet.

2003-04-09 16:47  edwards

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h,
	  include/fermact.h: Changed dsdu prototype.

2003-04-09 16:35  edwards

	* lib/update/molecdyn/dsdu/unprec_wilson_dsdu_w.cc: Added wilson
	  dsdu routine

2003-04-09 15:56  edwards

	* mainprogs/tests/t_conslinop.cc: Fixed innnerProduct call.

2003-04-09 15:43  edwards

	* lib/meas/smear/gaus_smear.cc: Fixed include path

2003-04-09 15:43  edwards

	* lib/actions/ferm/linop/: lmpsim_w.cc, lovddag_w.cc,
	  lovlapms_w.cc, lwldslash_w.cc, zolotarev4d_linop_w.cc: Fixed
	  include paths.

2003-04-09 15:43  edwards

	* lib/actions/ferm/fermacts/unprec_wilson_fermact_w.h: Removed
	  empty def of dsdu

2003-04-09 15:42  edwards

	* lib/actions/boson/operator/klein_gord.cc: Fixed include path.

2003-04-09 15:01  edwards

	* aclocal.m4, configure: Induced changes.

2003-04-09 15:00  edwards

	* mainprogs/tests/t_conslinop.cc: Mods to reflect new fermion
	  actions.

2003-04-09 13:27  edwards

	* lib/actions/boson/boson.h: Central include file.

2003-04-09 13:27  edwards

	* lib/actions/ferm/fermacts/fermacts.h: Control file.

2003-04-09 13:19  edwards

	* lib/actions/ferm/dslash/: dslash.h, dslashm_w.cc, dslashm_w.h:
	  Added dslash back in.

2003-04-09 13:16  edwards

	* lib/actions/: actions.h, ferm/fermacts/unprec_wilson_fermact_w.h,
	  ferm/linop/linop.h: Updates for new action and directory layout.

2003-04-09 13:13  edwards

	* lib/Makefile.am: Moving around directories.

2003-04-09 01:58  edwards

	* include/fermact.h: More changes.

2003-04-09 01:57  edwards

	* lib/actions/boson/operator/: klein_gord.cc, klein_gord.h: Moved
	  klein gordon stuff to boson operators.

2003-04-09 01:57  edwards

	* lib/actions/ferm/: ferm.h, fermacts/unprec_wilson_fermact_w.cc,
	  fermacts/unprec_wilson_fermact_w.h,
	  fermacts/zolotarev4d_fermact_w.cc,
	  fermacts/zolotarev4d_fermact_w.h, linop/linop.h,
	  linop/lmdagm_w.h, linop/lmpsim_w.cc, linop/lmpsim_w.h,
	  linop/lovddag_w.cc, linop/lovddag_w.h, linop/lovlapms_w.cc,
	  linop/lovlapms_w.h, linop/lwldslash_w.cc, linop/lwldslash_w.h,
	  linop/partrat.h, linop/unprec_wilson_linop_w.cc,
	  linop/unprec_wilson_linop_w.h, linop/zolotarev.h,
	  linop/zolotarev4d_linop_w.cc, linop/zolotarev4d_linop_w.h,
	  qprop/qprop.h, qprop/unprec_qprop_w.cc: Start of switch-over to
	  using FermionAction.

2003-04-08 22:04  edwards

	* include/gaugeact.h: Start of gauge action support.

2003-04-08 21:39  edwards

	* lib/update/molecdyn/hamilton.h: Start of a Hamiltonian system
	  class.

2003-04-08 21:25  edwards

	* lib/update/: update.h, heatbath/heatbath.h, molecdyn/molecdyn.h:
	  Added heatbath and molecular dynamics include files.

2003-04-08 21:21  edwards

	* include/fermact.h: Fermion actions.

2003-04-08 21:20  edwards

	* include/linopfound.h: Start of linear operator foundry support.
	  Not ready yet.

2003-04-08 17:37  edwards

	* lib/actions/gauge/gauge.h: New.

2003-04-08 17:36  edwards

	* lib/actions/ferm/invert/: invcg2.cc, invcg2.h, invert.h,
	  minvcg.cc, minvcg.h: Moved around.

2003-04-07 00:48  edwards

	* include/: chromainc.h, common_io.h: Added common_io.h - global IO
	  objects.

2003-04-07 00:47  edwards

	* include/common_declarations.h: Added back-in large numbers of
	  overlap and HMC params.

2003-04-04 13:37  edwards

	* mainprogs/main/propagator.cc: More tweaks.

2003-04-04 13:28  edwards

	* mainprogs/main/propagator.cc: Improved doxygen comments.

2003-04-04 13:20  edwards

	* mainprogs/main/propagator.cc: Changed doxygen comments.

2003-04-04 13:09  edwards

	* mainprogs/: mainprogs.h, main/main.h, tests/tests.h: Dummy
	  include files purely for doxygen.

2003-04-04 13:09  edwards

	* mainprogs/main/propagator.cc: Added doxygen comments.

2003-04-04 00:30  edwards

	* mainprogs/tests/t_conslinop.cc: More debugging.

2003-04-04 00:30  edwards

	* mainprogs/main/propagator.cc: Added FermAct and binary writing.

2003-04-03 15:46  tag chroma0-4

2003-04-03 15:46  edwards

	* configure: Induced changes.

2003-04-03 15:06  edwards

	* mainprogs/tests/t_conslinop.cc: Added a conslinop call.

2003-04-03 15:05  edwards

	* aclocal.m4: Induced changes.

2003-04-03 15:05  edwards

	* lib/Makefile.am: Moved invcg2m to invcg2

2003-04-03 14:51  edwards

	* include/linearop.h, mainprogs/tests/t_conslinop.cc: Changed
	  dslashlinearoperator to now have an apply function.  This seems
	  to solve compilers problems with a conflicting operator() - one
	  having int cb and the other virtual from parent class.

2003-04-03 14:28  edwards

	* include/chromabase.h, include/linearop.h,
	  mainprogs/tests/t_conslinop.cc: Changed related to linear
	  operators. Changed PLUS/MINUS to enums. Rearranged linop classes.

2003-04-02 17:28  edwards

	* lib/: io/readszin.cc, io/readszinqprop_w.cc,
	  meas/hadron/formfac_w.cc, meas/hadron/mesons_w.cc,
	  util/ft/sftmom.cc: Changed proto.h to qdp_util.h

2003-04-02 17:24  edwards

	* lib/util/gauge/: sunfill.cc, sunfill.h: Changed args to pass by
	  reference.

2003-04-02 14:30  heller

	* mainprogs/tests/: Makefile.am, t_hypsmear.cc: Added t_hypsmear:
	  test hyp-smearing routine.

2003-04-02 01:59  edwards

	* include/linearop.h, lib/io/io.h, lib/io/readszin.cc,
	  lib/io/readszinqprop_w.cc, lib/meas/glue/glue.h,
	  lib/meas/hadron/hadron.h, lib/meas/smear/gaus_smear.cc,
	  lib/update/update.h: Fixed doxygen comments.

2003-03-31 23:05  edwards

	* include/linearop.h: Changed doxygen comment.

2003-03-31 22:27  edwards

	* lib/meas/hadron/: mesons_w.cc, mesons_w.h: Added const to sftmom.

2003-03-31 22:15  edwards

	* lib/meas/hadron/barcomp_w.cc: Fixed doxygen comments.

2003-03-31 22:01  edwards

	* lib/: io/readszinqprop_w.cc, meas/hadron/formfac_w.cc: Fixed
	  doxygen comments.

2003-03-31 21:46  edwards

	* lib/util/ft/sftmom.cc: Added const qual.

2003-03-31 21:45  edwards

	* lib/util/ft/sftmom.h: Added some const member functions.

2003-03-31 21:38  edwards

	* aclocal.m4, configure, lib/actions/actions.h,
	  lib/meas/glue/mesplq.cc, lib/meas/hadron/barcomp_w.cc,
	  lib/meas/hadron/baryon_w.cc, lib/meas/hadron/formfac_w.cc,
	  lib/meas/hadron/mesons_w.cc, lib/meas/hadron/srcfil.cc,
	  lib/meas/smear/gaus_smear.cc, lib/meas/smear/hyp_smear.cc,
	  lib/meas/smear/sink_smear2_w.cc, lib/util/ferm/ferm.h,
	  lib/util/ferm/transf_w.cc, lib/util/ft/ft.h,
	  lib/util/ft/sftmom.h, lib/util/gauge/gauge.h: Added doxygen
	  comments.

2003-03-31 20:56  edwards

	* lib/meas/: eig/eig.h, gfix/gfix.h, glue/glue.h, glue/mesplq.h,
	  hadron/barcomp_w.h, hadron/baryon_w.h, hadron/formfac_w.h,
	  hadron/hadron.h, hadron/mesons_w.h, hadron/srcfil.h, pbp/pbp.h,
	  schrfun/schrfun.h, smear/gaus_smear.h, smear/sink_smear2_w.h,
	  smear/smear.h: Added doxygen comments.

2003-03-31 20:40  edwards

	* lib/meas/: eig/eig.h, gfix/gfix.h, pbp/pbp.h, schrfun/schrfun.h:
	  Initial include files.

2003-03-31 20:40  edwards

	* lib/meas/meas.h: Added doxygen comments.

2003-03-31 14:54  edwards

	* lib/meas/hadron/: formfac_w.cc, formfac_w.h: Fixed doxygen
	  comments.

2003-03-31 14:54  edwards

	* lib/util/gauge/reunit.cc: Fixed some doxygen comments.

2003-03-31 14:47  edwards

	* include/chromainc.h: Replaced explicit includes of library
	  routines with a lib.h

2003-03-31 14:46  edwards

	* lib/util/gauge/: expm12.cc, gauge.h, hotst.cc, reunit.cc,
	  reunit.h, su2extract.cc, su3proj.cc, sun_proj.cc, sunfill.cc,
	  taproj.cc: Added doxygen comments.

2003-03-31 14:38  edwards

	* lib/util/: util.h, gauge/gauge.h: Added doxygen comments.

2003-03-31 14:38  edwards

	* lib/lib.h: Added a central include file.

2003-03-31 12:55  edwards

	* docs/: chromadoc, chromadoc.in: Added mainprogs.

2003-03-31 12:53  edwards

	* docs/chromadoc: More tweaks.

2003-03-31 12:52  edwards

	* docs/chromadoc.in: Small cleanups.

2003-03-31 12:50  edwards

	* docs/chromadoc: Added a default doyxgen file.

2003-03-31 11:50  edwards

	* mainprogs/tests/t_conslinop.cc: Playing around.

2003-03-31 11:48  edwards

	* aclocal.m4, configure: Induced changes.

2003-03-31 11:48  edwards

	* mainprogs/main/Makefile.am: Changed noinst usage to check.

2003-03-31 11:42  edwards

	* configure.ac: Added doc support.

2003-03-31 11:27  edwards

	* configure.ac: Added configure of docs directory.

2003-03-31 11:27  edwards

	* docs/: Makefile.am, chromadoc.in, manual.tex: Added
	  documentation.

2003-03-30 20:05  heller

	* lib/meas/smear/hyp_smear.cc: Bug correction.

2003-03-30 17:08  heller

	* lib/meas/smear/smear.h: Added hyp_smear.h

2003-03-30 16:42  heller

	* lib/util/gauge/gauge.h: Added sun_proj.h su3proj.h su2extract.h
	  and sunfill.h

2003-03-30 13:34  edwards

	* mainprogs/tests/: Makefile.am, t_conslinop.cc: Added t_conslinop

2003-03-30 13:33  edwards

	* lib/actions/actions.h: Added construct.h

2003-03-30 13:11  edwards

	* include/linearop.h: Added return in dslash.

2003-03-30 12:15  edwards

	* mainprogs/main/propagator.cc: Added InvType.

2003-03-30 12:14  edwards

	* include/linearop.h: Removed namespace.

2003-03-30 12:14  edwards

	* include/: chromabase.h, chromainc.h: Moved linearop.h from base
	  to inc.

2003-03-30 10:43  edwards

	* lib/Makefile.am: Added sun_proj.cc .

2003-03-30 10:35  edwards

	* lib/util/gauge/: sun_proj.cc, sun_proj.h: Added sun_proj.{cc,h}
	  via Urs. Not tested yet but does compile.

2003-03-29 01:34  edwards

	* include/linearop.h: More tweaks.

2003-03-29 00:54  edwards

	* include/: chromabase.h, primitives.h: Moved PLUS,MINUS from
	  primitives to chromabase.h

2003-03-29 00:46  edwards

	* lib/Makefile.am: Added invcg2m.cc .

2003-03-29 00:26  edwards

	* mainprogs/main/propagator.cc: Changes to get to compile.

2003-03-29 00:25  edwards

	* lib/io/io.h: Removed ioqprop . Added readszin, readszinqprop_w.h.

2003-03-29 00:22  edwards

	* include/linearop.h: Removed abstract-ness again. Made destructors
	  virtual.

2003-03-29 00:21  edwards

	* include/common_declarations.h: Removed mom_norm stuff.

2003-03-29 00:21  edwards

	* include/chromainc.h: Added primitives.h . Removed a whole pile of
	  ancient prototypes.

2003-03-28 00:35  edwards

	* lib/Makefile.am: Added su2Extract and sunFill.

2003-03-28 00:34  edwards

	* lib/util/gauge/: su2extract.cc, su2extract.h, sunfill.cc,
	  sunfill.h: Moved over from qdp.

2003-03-28 00:34  edwards

	* lib/util/gauge/su3proj.cc: Changed include files for su2Extract
	  and sunFill.

2003-03-27 23:21  edwards

	* configure: Induced changes.

2003-03-27 23:12  edwards

	* aclocal.m4: Induced changes.

2003-03-27 23:11  edwards

	* lib/Makefile.am: Added hyp_smear.cc

2003-03-27 23:10  edwards

	* lib/meas/smear/: hyp_smear.cc, hyp_smear.h: Added hyp_smear.

2003-03-27 22:58  edwards

	* include/linearop.h: Made LinearOperator purely abstract again.

2003-03-27 22:55  edwards

	* lib/Makefile.am: Removed qprop_io.cc . Added readszin,
	  readszinqprop, su3proj.

2003-03-27 22:54  edwards

	* lib/io/: readszin.cc, readszin.h, readszinqprop_w.cc,
	  readszinqprop_w.h: Temporarily renamed routines to not clash with
	  QDP.

2003-03-27 22:53  edwards

	* lib/util/gauge/: su3proj.cc, su3proj.h: Added su3proj. Modified
	  to compile, but not tested.

2003-03-27 22:06  edwards

	* lib/io/: readszin.cc, readszin.h, readszinqprop_w.cc,
	  readszinqprop_w.h: Moved readers from QDP to here. Should be
	  portable.

2003-03-26 17:12  dgr

	* mainprogs/main/: Makefile.am, propagator.cc: Added propagator.cc

2003-03-26 17:10  dgr

	* aclocal.m4, configure: Induced changes.

2003-03-26 17:10  dgr

	* include/linearop.h: Removed virtualness of linearop.

2003-03-26 17:09  dgr

	* include/chromainc.h, lib/io/io.h: Added io.h

2003-03-26 17:08  dgr

	* include/primitives.h: Added some new fermion actions.

2003-03-26 17:07  dgr

	* include/: common_declarations.h, common_declarations.h.old: Moved
	  off common_decls to an old file.

2003-03-26 17:05  dgr

	* lib/Makefile.am: Added some new files.

2003-03-26 17:05  dgr

	* lib/actions/actions.h: Loads of changes.

2003-03-25 22:31  edwards

	* README: New info.

2003-03-20 14:34  flemingg

	* lib/meas/hadron/formfac_w.cc, lib/meas/hadron/formfac_w.h,
	  lib/util/ft/sftmom.cc, lib/util/ft/sftmom.h,
	  mainprogs/tests/t_formfac.cc: Evolved formfac_w.cc to use SftMom
	  class, which included some bug fixes in features in SftMom which
	  had been previously untested and evolution of the corresponding
	  test program.

2003-03-14 16:51  flemingg

	* lib/meas/hadron/mesons_w.cc: Changes the way in which the nml
	  data is output to match what's done in szin.

2003-03-14 12:16  flemingg

	* lib/meas/hadron/mesons_w.cc: Variant 1 is now working with
	  SftMom::sft().  In arbitrary units, the relative performance
	  seems to be: V1) 7.5, V2) 10, V3) 100.

2003-03-14 12:13  flemingg

	* lib/util/ft/: sftmom.cc, sftmom.h: SftMom::sft() now works.

2003-03-14 00:14  flemingg

	* aclocal.m4, configure, lib/meas/hadron/mesons_w.cc,
	  lib/meas/hadron/mesons_w.h, mainprogs/tests/t_mesons_w.cc:
	  rewrite of mesons_w.cc to use the new SftMom class.  mesons_w.cc
	  still needs to be cleaned up once the best strategy is resolved.
	  But for now, the library and test program compiles and runs.

2003-03-14 00:11  flemingg

	* include/chromainc.h: moved util/util.h ahead of meas/meas.h so
	  that class SftMom would be declared before mesons() because an
	  SftMom reference is passed as arg

2003-03-14 00:08  flemingg

	* mainprogs/tests/t_lwldslash.cc: Added '#include <primitives.h>'
	  so that PLUS is defined and test compiles

2003-03-14 00:06  flemingg

	* lib/: Makefile.am, util/util.h, util/ft/ft.h, util/ft/sftmom.cc,
	  util/ft/sftmom.h: Initial version of SftMom class

2003-03-07 23:45  edwards

	* lib/Makefile.am: Added barcomp.

2003-03-07 23:42  edwards

	* lib/meas/hadron/barcomp_w.cc: Switched to using ranks for all
	  indices

2003-03-07 23:42  edwards

	* lib/meas/hadron/hadron.h: Added barcomp

2003-03-07 22:57  edwards

	* lib/meas/hadron/: barcomp_w.cc, barcomp_w.h: Initial versions.

2003-03-07 12:26  edwards

	* lib/meas/smear/gaus_smear.cc: Changed implementations to use a
	  template.

2003-03-07 00:44  edwards

	* include/: chromainc.h, common_declarations.h: Changed/added
	  include guards.

2003-03-07 00:44  edwards

	* include/primitives.h: Changed OPTION_VALUE to OPTION_

2003-03-07 00:43  edwards

	* lib/Makefile.am: Added sink_smear2

2003-03-07 00:42  edwards

	* lib/meas/smear/smear.h: Changed sink_smear name.

2003-03-07 00:42  edwards

	* lib/meas/smear/: sink_smear2_w.cc, sink_smear2_w.h, smear.h:
	  Added sink_smear2.

2003-03-07 00:24  edwards

	* aclocal.m4, configure: Induced changes.

2003-03-07 00:22  edwards

	* lib/meas/smear/gaus_smear.cc: Added a propagator version of
	  gaus_smear

2003-03-07 00:22  edwards

	* lib/meas/smear/gaus_smear.h: Added a

2003-03-05 22:38  edwards

	* lib/meas/hadron/: formfac_w.cc, mesons_w.cc: Added
	  start/end_code.

2003-03-05 22:35  edwards

	* lib/util/gauge/reunit.h: Added comments.

2003-03-05 22:34  edwards

	* lib/meas/glue/mesplq.cc: Added start and end code ops.

2003-03-05 21:07  flemingg

	* lib/meas/hadron/mesons_w.cc: Changed the MomList class to
	  eliminate an unneeded class member.

2003-03-05 19:30  flemingg

	* configure, lib/meas/hadron/mesons_w.cc,
	  lib/meas/hadron/mesons_w.h, mainprogs/tests/Makefile.am,
	  mainprogs/tests/t_mesons_w.cc: Complete rewrite of
	  lib/meas/hadron/mesons_w.cc, including a simple test program in
	  mainprogs/tests built with 'make check' and various other changes
	  to autoconf/make files to support this rewrite.

2003-03-05 19:25  flemingg

	* lib/meas/hadron/formfac_w.cc: Added some comments about things
	  that need to be looked at more carefully.

2003-03-04 20:25  flemingg

	* lib/meas/hadron/formfac_w.cc: Modified to insert all Nd^2 Gamma
	  matrices in the local current.  For vector and axial vector
	  insertions, the non-local currents are computed as well.

2003-03-03 11:07  flemingg

	* mainprogs/tests/Makefile.am: Added 'make check' target for
	  t_formfac test and reran automake, etc

2003-03-03 11:05  flemingg

	* mainprogs/tests/t_formfac.cc: Test for the FormFac() routine

2003-03-03 11:04  flemingg

	* lib/meas/meas.h: Added #include "hadron/hadron.h"

2003-03-01 21:30  flemingg

	* aclocal.m4, configure, configure.ac, lib/Makefile.am,
	  lib/meas/hadron/formfac_w.cc, lib/meas/hadron/formfac_w.h: Added
	  AC_PREREQ(2.56) to configure.ac because v2.53 doesn't work.  Also
	  modified formfac_w.cc to handle more momenta and modified
	  lib/Makefile.am so that formfac_w.cc is compiled.  Everything
	  compiles ok, but formfac_w.cc is untested until a test program is
	  written and run.

2003-02-25 22:19  edwards

	* lib/meas/hadron/: baryon_w.h, mesons_w.h: Put comments in include
	  files.

2003-02-25 22:19  edwards

	* lib/meas/hadron/hadron.h: Added formfac_w.h

2003-02-25 15:25  edwards

	* lib/meas/hadron/: formfac_w.cc, formfac_w.h: Carried over from
	  qdp++/examples.

2003-02-16 23:37  tag chroma0-3

2003-02-16 23:37  edwards

	* mainprogs/tests/t_lwldslash.cc: Have a test of lmpsim.

2003-02-16 23:37  edwards

	* mainprogs/tests/Makefile.am: Force to use dependencies for all
	  targets.

2003-02-16 23:36  edwards

	* lib/Makefile.am: Added lmpsim_w.cc

2003-02-16 15:06  edwards

	* configure: Induced changes.

2003-02-16 15:06  edwards

	* mainprogs/tests/t_lwldslash.cc: New tests.

2003-02-16 15:06  edwards

	* mainprogs/tests/t_dslashm.cc: Changed comments.

2003-02-16 15:05  edwards

	* mainprogs/tests/Makefile.am: Added t_lwldslash

2003-02-16 15:03  edwards

	* lib/Makefile.am: Repaired what George broke...

2003-02-16 13:39  edwards

	* lib/meas/meas.h: Bug fix. Had wrong include guards.

2003-02-16 13:30  edwards

	* mainprogs/tests/t_mesplq.cc: Moved NmlWriter declaration back
	  into main body.

2003-02-16 13:29  edwards

	* configure.ac: Changed to version 0.1 for now.

2003-02-15 23:34  edwards

	* lib/geom/geom.cc, mainprogs/tests/Makefile.am: Fix ups.

2003-02-15 23:15  edwards

	* lib/geom/geom.cc: Changed szin to chroma file names.

2003-02-15 23:14  edwards

	* lib/meas/glue/mesplq.cc, lib/meas/hadron/baryon_w.cc,
	  lib/meas/hadron/mesons_w.cc, lib/meas/hadron/srcfil.cc,
	  lib/meas/smear/gaus_smear.cc, lib/util/ferm/transf_w.cc,
	  lib/util/gauge/expm12.cc, lib/util/gauge/hotst.cc,
	  lib/util/gauge/reunit.cc, lib/util/gauge/taproj.cc,
	  mainprogs/tests/t_dslashm.cc, mainprogs/tests/t_io.cc,
	  mainprogs/tests/t_mesplq.cc: Changed szin file names to chroma
	  file names.

2003-02-15 23:07  edwards

	* INSTALL, aclocal.m4, configure, configure.ac,
	  include/Makefile.am, include/szinbase.h, lib/Makefile,
	  lib/Makefile.am, mainprogs/Makefile, mainprogs/main/Makefile.am,
	  mainprogs/tests/Makefile.am: Chages szin file names to chroma
	  file names.

2003-02-15 23:06  edwards

	* mainprogs/: main/Makefile, tests/Makefile: Not used - are
	  generated.

2003-02-15 23:02  edwards

	* include/: chroma.h, chromabase.h, chromainc.h, szin.h, szininc.h:
	  Changed szin files to chroma files.

2003-02-15 21:19  edwards

	* lib/update/update.h: New file.

2003-02-15 17:53  flemingg

	* aclocal.m4, configure, include/Makefile.am: New build system
	  installation is complete and tested as far as I can go.  The
	  configuration step works.  The build currently fails because
	  lib/update/update.h is missing but include/szininc.h refers to
	  it.  Presumably this is because the package is under active
	  development.

2003-02-15 17:42  flemingg

	* mainprogs/main/Makefile.am: consistent with new build scheme

2003-02-15 17:42  flemingg

	* mainprogs/tests/Makefile.am: Consistent with new build scheme

2003-02-15 17:40  flemingg

	* lib/Makefile.am: Updated lib/Makefile.am consistent with new
	  build scheme

2003-02-15 17:37  flemingg

	* Makefile.am: Fixed the EXTRA_DIST problem that would've broken
	  'make dist'

2003-02-15 00:57  edwards

	* include/: szin.h, szinbase.h, szininc.h: Made szin.h driver.
	  Split off a "base" file and a full include file.

2003-02-15 00:56  edwards

	* include/linearop.h: Renamed from linop.h

2003-02-15 00:55  edwards

	* include/linop.h: Renamed to linearop.h

2003-02-15 00:55  edwards

	* include/defs.h: Don't need.

2003-02-15 00:54  edwards

	* lib/: actions/actions.h, meas/meas.h, meas/glue/glue.h,
	  meas/glue/mesplq.cc, meas/glue/mesplq.h, meas/hadron/baryon_w.cc,
	  meas/hadron/baryon_w.h, meas/hadron/hadron.h,
	  meas/hadron/mesons_w.cc, meas/hadron/mesons_w.h,
	  meas/hadron/srcfil.cc, meas/hadron/srcfil.h,
	  meas/smear/gaus_smear.cc, meas/smear/gaus_smear.h,
	  meas/smear/smear.h, util/util.h, util/ferm/ferm.h,
	  util/ferm/transf_w.cc, util/ferm/transf_w.h,
	  util/gauge/expm12.cc, util/gauge/expm12.h, util/gauge/gauge.h,
	  util/gauge/hotst.cc, util/gauge/hotst.h, util/gauge/reunit.cc,
	  util/gauge/reunit.h, util/gauge/taproj.cc, util/gauge/taproj.h:
	  Switch to having an accompanying .h with every .cc .

2003-02-15 00:53  edwards

	* lib/Makefile.am: Added new include level.

2003-02-14 23:17  edwards

	* configure: Removed dos-isms.

2003-02-14 23:09  edwards

	* aclocal.m4, configure: Induced changes.

2003-02-14 23:09  edwards

	* acinclude.m4: Carried over from qdpapps

2003-02-14 23:08  edwards

	* mainprogs/main/Makefile.am, mainprogs/tests/Makefile.am,
	  configure.ac: Changes from qdpapps.

2003-02-14 23:08  edwards

	* lib/meas/: hadron/srcfil.cc, smear/gaus_smear.cc: Added new
	  files.

2003-02-14 23:07  edwards

	* lib/Makefile.am: Changes brought from qdpapps.

2003-02-14 17:12  edwards

	* aclocal.m4: Induced changes.

2003-02-14 17:12  edwards

	* acinclude.m4: Removed unused cases.

2003-02-14 17:12  edwards

	* include/linop.h: Fixed dslash () usage.

2003-02-14 17:11  edwards

	* lib/Makefile.am: Added lwldslash_w.cc

2003-02-10 10:51  edwards

	* include/: linop.h, szin.h: Added a linear operator construction.

2003-01-31 13:42  edwards

	* acinclude.m4: Changed initialization code.

2003-01-31 13:41  edwards

	* mainprogs/tests/: t_dslashm.cc, t_io.cc, t_mesplq.cc: Updated to
	  use new initialization.

2003-01-31 10:43  edwards

	* configure: New QDP++ compilation test.

2003-01-31 10:42  edwards

	* aclocal.m4: Changed QDP++ compilation test to new form of layout.

2003-01-25 23:30  edwards

	* lib/util/gauge/: expm12.cc, hotst.cc, taproj.cc: Changed
	  propagator.h include to szin.h .

2003-01-25 23:28  edwards

	* lib/util/gauge/: expm12.cc, hotst.cc, taproj.cc: Added some new
	  files.

2003-01-04 00:58  tag szin0-2

2003-01-04 00:58  edwards

	* configure: Removed dos-isms.

2003-01-04 00:22  edwards

	* lib/meas/glue/mesplq.cc: Changed to use Geometry::tDir().

2003-01-04 00:16  edwards

	* configure: Induced changes.

2003-01-04 00:15  edwards

	* aclocal.m4: Nit-picky changes to make automake happy.

2003-01-04 00:13  edwards

	* include/szin.h: Updates.

2003-01-04 00:13  edwards

	* include/geom.h: Changed from a class to a namespace.

2003-01-04 00:11  edwards

	* lib/Makefile.am: Fixed headers.

2003-01-04 00:10  edwards

	* lib/geom/geom.cc: No longer a class object. Now, params in a
	  namespace.

2003-01-04 00:10  edwards

	* lib/: meas/glue/mesplq.cc, meas/hadron/baryon_w.cc,
	  meas/hadron/mesons_w.cc, util/gauge/reunit.cc: Reimported from
	  qdp++

2003-01-04 00:09  edwards

	* mainprogs/tests/: t_dslashm.cc, t_io.cc, t_mesplq.cc: Changes in
	  setup.

2003-01-04 00:07  edwards

	* mainprogs/: main/Makefile.am, tests/Makefile.am: Changed to
	  $(MAKE)

2003-01-03 23:10  edwards

	* lib/: meas/glue/mesplq.cc, meas/hadron/baryon_w.cc,
	  meas/hadron/mesons_w.cc, util/gauge/reunit.cc: Add initial files.

2003-01-03 20:00  bjoo

	* INSTALL, aclocal.m4, configure, configure.ac: Now picks up
	  shellscript to set loads of environment variables as per YAAM
	  idea discussed with Robert

2002-12-16 02:12  tag szin0-1

2002-12-16 02:12  edwards

	* acinclude.m4, aclocal.m4, configure, mainprogs/tests/t_mesplq.cc:
	  Changes to make initial version compile.

2002-12-16 02:08  edwards

	* mainprogs/: main/Makefile, main/Makefile.am, tests/Makefile,
	  tests/Makefile.am, tests/t_dslashm.cc, tests/t_io.cc,
	  tests/t_mesplq.cc: Automake version.

2002-12-16 01:56  edwards

	* include/: Makefile.am, common_declarations.h, defs.h, geom.h,
	  primitives.h, szin.h: Automake version.

2002-12-16 01:53  edwards

	* config/config.guess, config/config.sub, config/depcomp,
	  config/install-sh, config/missing, config/mkinstalldirs,
	  lib/Makefile, lib/Makefile.am, lib/geom/geom.cc,
	  mainprogs/Makefile, mainprogs/Makefile.am, AUTHORS, COPYING,
	  INSTALL, Makefile.am, NEWS, README, acinclude.m4, aclocal.m4,
	  configure, configure.ac: Automake version.

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