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To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
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This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
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"""
This script creates a table with statistical values (minimum, average, standard deviation, maximum) on the run times of
embedding iterations for the different data sets. Specifically, these data are compared for the accelerated iterations
that use the polar quad tree acceleration structure as well as for the non-accelerated, exact hyperbolic t-SNE
implementation.
"""

###########
# IMPORTS #
###########

from pathlib import Path
import pandas as pd
import numpy as np

####################
# READING THE DATA #
####################
results_path = Path("../results/samples_per_data_set/")
df = pd.read_csv(results_path.joinpath("overview.csv"))
timings_dfs = []
for record in df.to_records():
    timing_df = pd.read_csv(record.run_directory.replace(".", str(results_path)) + "/timings.csv")
    timing_df = timing_df[(timing_df.time_type == "tot_gradient")]

    for cn in df.columns:
        timing_df[cn] = record[cn]
    timings_dfs.append(timing_df)

timings_df = pd.concat(timings_dfs, axis=0, ignore_index=True)
timings_df["early_exag"] = np.repeat(False, timings_df.shape[0])
timings_df.loc[timings_df.it_n <= 250, "early_exag"] = True
del timings_dfs

############################
# COMPUTING THE STATISTICS #
############################

# Work with the "equal length" data, as this splitting technique proved to be more efficient, filtering by
# "equal_length" contains both accelerated and exact data.
plot_times_df = timings_df.copy()
plot_times_df = plot_times_df[(plot_times_df.splitting_strategy == "equal_length")]

# Filter out only the exact, i.e., non-accelerated data
plot_times_df_exact = plot_times_df.copy()
plot_times_df_exact = plot_times_df_exact[(plot_times_df_exact.tsne_type == "exact")]

# Print Min, Avg, Std, Max of the timings per dataset per size
grouped = plot_times_df_exact.groupby(["dataset", "sample_size"])
print("Statistics exact:")
print(grouped["total_time"].min())
print(grouped["total_time"].mean())
print(grouped["total_time"].std())
print(grouped["total_time"].max())

# Filter out only the accelerated data, i.e., the data using the polar quad tree
plot_times_df_accelerated = plot_times_df.copy()
plot_times_df_accelerated = plot_times_df_accelerated[(plot_times_df_accelerated.tsne_type == "accelerated")]

# Print Min, Avg, Std, Max of the timings per dataset per size
grouped = plot_times_df_accelerated.groupby(["dataset", "sample_size"])
print("Statistics accelerated:")
print(grouped["total_time"].min())
print(grouped["total_time"].mean())
print(grouped["total_time"].std())
print(grouped["total_time"].max())

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