To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Heritage persistent IDentifiers (SWHIDs) must be used instead of copying and pasting the url from the address bar of the browser (as there is no guarantee the current URI scheme will remain the same over time).
Select below a type of object currently browsed in order to display its associated SWHID and permalink.
# patchseqtools R functions for gene selection and analysis of Patch-seq data. `patchseqtools` includes several functions that are used for quality control and cell typing of Patch-seq cells at the Allen Institute. Many of these functions are wrappers for functions from other libraries (see below) and we enourage proper citation of relevant tools when using those functions. **Specific topics include:** 1. Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC) 2. Cell type mapping using tree mapping strategy (to be added later) 3. Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html) ## Installation ``` devtools::install_github("AllenInstitute/patchseqtools") ``` ## Library use cases No vignettes currently available. ## License The license for this package is available on Github at: https://github.com/AllenInstitute/patchseqtools/blob/master/LICENSE ## Level of Support We are not planning to update this library unless bugs are found. However, we welcome community input through both issues and pull requests. ## Contribution Agreement If you contribute code to this repository through pull requests or other mechanisms, you are subject to the Allen Institute Contribution Agreement, which is available in full at: https://github.com/AllenInstitute/patchseqtools/blob/master/CONTRIBUTION