Makefile
OVLP_DIR := ragout/overlap/cpp_impl/
M2S_DIR := ragout/maf2synteny/cpp_impl/
BIN_DIR := $(shell pwd)/lib/
UNAME := $(shell uname -s)
ifneq ($(wildcard /usr/bin/clang),)
CPP := clang++ -std=c++11
ifeq ($(UNAME),Darwin) #for macos
CPP += -stdlib=libc++
endif
else
CPP := g++ -std=c++11
endif
export CPP
export BIN_DIR
.PHONY: all overlap dependencies clean maf2synteny
all: overlap maf2synteny
overlap:
make -C ${OVLP_DIR} all
maf2synteny:
make -C ${M2S_DIR} all
dependencies:
scripts/install-sibelia.py
clean:
make -C ${OVLP_DIR} clean
make -C ${M2S_DIR} clean