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Merged r18932, r19073, and r19192 from trunk to v3.1 branch
* To convert pseudo-free-surface B.C. to free-slip B.C., do the following: 1) --solver.bc.topvbc=2 --> --solver.bc.topvbc=0 2) --solver.bc.pseudo_free_surf=on --> --solver.bc.pseudo_free_surf=off * To try a different hot blob, one can specify three parameters: 1. solver.ic.blob_center: Coordinates(theta,fi,r) of the center. 2. solver.ic.blob_radius: Radius as non-dimensional distance. 3. solver.ic.blob_dT: The amount of temperature increase/decrease within the blob as non-dimensional temperature. Note: It is required to keep "solver.ic.tic_method=2" to have the initial hot blob.