# # # dgs.R # # $Revision: 1.8 $ $Date: 2015/10/21 09:06:57 $ # # Diggle-Gates-Stibbard process # # # ------------------------------------------------------------------- # DiggleGatesStibbard <- local({ # .......... auxiliary functions ................ dgsTerms <- function(X, Y, idX, idY, rho) { stopifnot(is.numeric(rho)) # sort in increasing order of x coordinate oX <- fave.order(X$x) oY <- fave.order(Y$x) Xsort <- X[oX] Ysort <- Y[oY] idXsort <- idX[oX] idYsort <- idY[oY] nX <- npoints(X) nY <- npoints(Y) # call C routine out <- .C("Ediggatsti", nnsource = as.integer(nX), xsource = as.double(Xsort$x), ysource = as.double(Xsort$y), idsource = as.integer(idXsort), nntarget = as.integer(nY), xtarget = as.double(Ysort$x), ytarget = as.double(Ysort$y), idtarget = as.integer(idYsort), rrho = as.double(rho), values = as.double(double(nX))) answer <- integer(nX) answer[oX] <- out$values return(answer) } # ...... template object ...................... BlankDGS <- list( name = "Diggle-Gates-Stibbard process", creator = "DiggleGatesStibbard", family = "pairwise.family", # evaluated later pot = function(d, par) { rho <- par$rho v <- log(sin((pi/2) * d/rho)^2) v[ d > par$rho ] <- 0 attr(v, "IsOffset") <- TRUE v }, par = list(rho = NULL), # to be filled in later parnames = "interaction range", init = function(self) { rho <- self$par$rho if(!is.numeric(rho) || length(rho) != 1L || rho <= 0) stop("interaction range rho must be a positive number") }, update = NULL, # default OK print = NULL, # default OK interpret = function(coeffs, self) { return(NULL) }, valid = function(coeffs, self) { return(TRUE) }, project = function(coeffs, self) { return(NULL) }, irange = function(self, coeffs=NA, epsilon=0, ...) { rho <- self$par$rho return(rho) }, version=NULL, # evaluated later # fast evaluation is available for the border correction only can.do.fast=function(X,correction,par) { return(all(correction %in% c("border", "none"))) }, fasteval=function(X,U,EqualPairs,pairpot,potpars,correction, ...) { # fast evaluator for DiggleGatesStibbard interaction if(!all(correction %in% c("border", "none"))) return(NULL) if(spatstat.options("fasteval") == "test") message("Using fast eval for DiggleGatesStibbard") rho <- potpars$rho idX <- seq_len(npoints(X)) idU <- rep.int(-1L, npoints(U)) idU[EqualPairs[,2L]] <- EqualPairs[,1L] v <- dgsTerms(U, X, idU, idX, rho) v <- matrix(v, ncol=1L) attr(v, "IsOffset") <- TRUE return(v) }, Mayer=function(coeffs, self) { # second Mayer cluster integral rho <- self$par$rho return((pi/2 - 2/pi) * rho^2) } ) class(BlankDGS) <- "interact" DiggleGatesStibbard <- function(rho) { instantiate.interact(BlankDGS, list(rho = rho)) } DiggleGatesStibbard <- intermaker(DiggleGatesStibbard, BlankDGS) DiggleGatesStibbard })