https://github.com/vector-engineering/COVID19-CG
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Tip revision: e9558dc11b31b908f3af142e403d33e91d417b8a authored by Albert Tian Chen on 24 January 2021, 10:43:42 UTC
Fix location typos
Tip revision: e9558dc
environment.yml
name: covid-cg
channels:
  - conda-forge
  - defaults
  - bioconda
dependencies:
  - python=3.8.3
  - numpy=1.18.5
  - pandas=1.0.5
  - xlrd=1.2.0
  - bowtie2=2.4.1
  - pip=20.1.1
  - snakemake=5.20.1
  - samtools=1.10
  - pip:
      - pysam==0.15.4
      # For cloud function development
      - functions-framework==2.0.0
      - google-cloud-storage==1.29.0
  # If you want to run the notebooks:
  - jupyter=1.0.0
  - jupyter_contrib_nbextensions=0.5.1
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