Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
content badge
swh:1:cnt:fd8610a6adaa4e2bab415597abad8881290d8129

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
% Figure_3_Generate.m
% Script used to generate Figure 3 from Barendregt et al., 2022.

clear

% Define simulation variables for SNR change task simulations:
T = 5; dt = 0.005; t_i = 1;
dg = 0.001;
R = 5; c = @(t) 1; N = 5;
m = NaN(1,T/dt+1);
m(1:100) = 5; m(101:end) = 2;

% Simulate reward timeseries (Fig. 3A) and normative model (Fig. 3B):
SC_Threshold_Schematic(T,dt,t_i,dg,m,c,R,N)

% Load motif data:
load('SC_Threshold_Motifs.mat')

% Generate colormap of motifs (Fig. 3C):
figure
imagesc([m_1(1) m_1(end)],[m_2(1) m_2(end)],type')
set(gca,'ydir','normal')
colormap([128 177 211;...
    253 180 98;...
    255 237 111]/255)

% Define simulation parameters to construct empirical response time
% distributions:
N_trial = 1e4;
mid = linspace(0,1,25);
edges = [mid-0.5*(mid(1)+mid(2)) mid(end)+0.5*(mid(1)+mid(2))];

% Generate motif i behavior and response distribution (Fig. 3i):
figure
plot(0:dt:(T/5),squeeze(thresh(1,100,:)),'linewidth',15,'color','#ffed6f')
hold on
plot(0:dt:(T/5),squeeze(-thresh(1,100,:)),'linewidth',15,'color','#ffed6f')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
m = NaN(1,T/dt+1); m(1:100) = m_1(1); m(101:end) = m_2(100);
y = SC_RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(1,100,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#ffed6f')
xlim([0 T/5])

% Generate motif ii behavior and response distribution (Fig. 3ii):
figure
plot(0:dt:(T/5),squeeze(thresh(50,50,:)),'linewidth',15,'color','#80b1d3')
hold on
plot(0:dt:(T/5),squeeze(-thresh(50,50,:)),'linewidth',15,'color','#80b1d3')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
m = NaN(1,T/dt+1); m(1:100) = m_1(50); m(101:end) = m_2(50);
y = SC_RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(50,50,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#80b1d3')
xlim([0 T/5])

% Generate motif iii behavior and response distribution (Fig. 3iii):
figure
plot(0:dt:(T/5),squeeze(thresh(100,1,:)),'linewidth',15,'color','#fdb462')
hold on
plot(0:dt:(T/5),squeeze(-thresh(100,1,:)),'linewidth',15,'color','#fdb462')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
m = NaN(1,T/dt+1); m(1:100) = m_1(100); m(101:end) = m_2(1);
y = SC_RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(100,1,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#fdb462')
xlim([0 T/5])

back to top

Software Heritage — Copyright (C) 2015–2026, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API