Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

https://github.com/nwbarendregt/AdaptNormThresh
25 November 2025, 14:51:04 UTC
  • Code
  • Branches (1)
  • Releases (0)
  • Visits
    • Branches
    • Releases
    • HEAD
    • refs/heads/main
    No releases to show
  • bbb89f8
  • /
  • Figure 3 -- Known Quality Thresholds
  • /
  • Figure_3_Generate.m
Raw File Download
Take a new snapshot of a software origin

If the archived software origin currently browsed is not synchronized with its upstream version (for instance when new commits have been issued), you can explicitly request Software Heritage to take a new snapshot of it.

Use the form below to proceed. Once a request has been submitted and accepted, it will be processed as soon as possible. You can then check its processing state by visiting this dedicated page.
swh spinner

Processing "take a new snapshot" request ...

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
  • directory
  • revision
  • snapshot
origin badgecontent badge
swh:1:cnt:fd8610a6adaa4e2bab415597abad8881290d8129
origin badgedirectory badge
swh:1:dir:a7cd731792714ab6a6f3580e1de919149c703f89
origin badgerevision badge
swh:1:rev:2878a3d9f5a3b9b89a0084a897bef3414e9de4a2
origin badgesnapshot badge
swh:1:snp:a568cc5cff39965992895669038ed8c43a59eedd

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
  • directory
  • revision
  • snapshot
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Tip revision: 2878a3d9f5a3b9b89a0084a897bef3414e9de4a2 authored by nwbarendregt on 03 May 2022, 15:08:29 UTC
Add files via upload
Tip revision: 2878a3d
Figure_3_Generate.m
% Figure_3_Generate.m
% Script used to generate Figure 3 from Barendregt et al., 2022.

clear

% Define simulation variables for SNR change task simulations:
T = 5; dt = 0.005; t_i = 1;
dg = 0.001;
R = 5; c = @(t) 1; N = 5;
m = NaN(1,T/dt+1);
m(1:100) = 5; m(101:end) = 2;

% Simulate reward timeseries (Fig. 3A) and normative model (Fig. 3B):
SC_Threshold_Schematic(T,dt,t_i,dg,m,c,R,N)

% Load motif data:
load('SC_Threshold_Motifs.mat')

% Generate colormap of motifs (Fig. 3C):
figure
imagesc([m_1(1) m_1(end)],[m_2(1) m_2(end)],type')
set(gca,'ydir','normal')
colormap([128 177 211;...
    253 180 98;...
    255 237 111]/255)

% Define simulation parameters to construct empirical response time
% distributions:
N_trial = 1e4;
mid = linspace(0,1,25);
edges = [mid-0.5*(mid(1)+mid(2)) mid(end)+0.5*(mid(1)+mid(2))];

% Generate motif i behavior and response distribution (Fig. 3i):
figure
plot(0:dt:(T/5),squeeze(thresh(1,100,:)),'linewidth',15,'color','#ffed6f')
hold on
plot(0:dt:(T/5),squeeze(-thresh(1,100,:)),'linewidth',15,'color','#ffed6f')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
m = NaN(1,T/dt+1); m(1:100) = m_1(1); m(101:end) = m_2(100);
y = SC_RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(1,100,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#ffed6f')
xlim([0 T/5])

% Generate motif ii behavior and response distribution (Fig. 3ii):
figure
plot(0:dt:(T/5),squeeze(thresh(50,50,:)),'linewidth',15,'color','#80b1d3')
hold on
plot(0:dt:(T/5),squeeze(-thresh(50,50,:)),'linewidth',15,'color','#80b1d3')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
m = NaN(1,T/dt+1); m(1:100) = m_1(50); m(101:end) = m_2(50);
y = SC_RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(50,50,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#80b1d3')
xlim([0 T/5])

% Generate motif iii behavior and response distribution (Fig. 3iii):
figure
plot(0:dt:(T/5),squeeze(thresh(100,1,:)),'linewidth',15,'color','#fdb462')
hold on
plot(0:dt:(T/5),squeeze(-thresh(100,1,:)),'linewidth',15,'color','#fdb462')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
m = NaN(1,T/dt+1); m(1:100) = m_1(100); m(101:end) = m_2(1);
y = SC_RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(100,1,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#fdb462')
xlim([0 T/5])

back to top

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API