https://github.com/gtonkinhill/SC2_withinhost
Tip revision: 5a20ba005ddcbe9b81f701a248a2ae348d2d9bd8 authored by Gerry Tonkin-Hill on 02 July 2021, 04:00:41 UTC
add shearwater variant calling R scripts and readme
add shearwater variant calling R scripts and readme
Tip revision: 5a20ba0
File | Mode | Size |
---|---|---|
README.md | -rw-r--r-- | 2.8 KB |
heron_background_panel_generation.R | -rw-r--r-- | 3.6 KB |
heron_combined_coverage_table.R | -rw-r--r-- | 383 bytes |
heron_genome_wide_pileup.R | -rw-r--r-- | 665 bytes |
heron_genome_wide_pileup_wrapper.R | -rw-r--r-- | 936 bytes |
heron_good_sample_and_normal_panel_list_creation.R | -rw-r--r-- | 3.6 KB |
heron_merge_shearwater_results.R | -rw-r--r-- | 354 bytes |
heron_post_shearwater_filter_all_samples_subs_and_indels_min_depth_100x.R | -rw-r--r-- | 10.3 KB |
heron_sample_amplicon_coverage_exploration.R | -rw-r--r-- | 10.3 KB |
heron_shearwater_al28_lower_bound_precalculated_rho_farm_script.R | -rw-r--r-- | 4.4 KB |
heron_shearwater_al28_lower_bound_precalculated_rho_farm_wrapper.R | -rw-r--r-- | 874 bytes |
heron_shearwater_normal_panel_rho_mu_calculation.R | -rw-r--r-- | 2.2 KB |
heron_shearwater_panel_1_trinucleotide_plot_function.R | -rw-r--r-- | 15.7 KB |
heron_shearwater_strict_union_support_from_each_read.R | -rw-r--r-- | 16.4 KB |