| HEAD | cdc0ed1 | Add missing header tags as per the spec (PR #1238) Add omitted tags to KNOWN_HEADER_FIELDS and VALID_HEADER_ORDER, so that AlignmentHeader.from_dict()/to_dict() will preserve all header field tags defined in the SAM specification. Addresses #1237. Exercise TP:linear in some header tests. Co-authored-by: John Marshall <jmarshall@hey.com> | 20 October 2023, 10:12:28 UTC |
| refs/heads/master | cdc0ed1 | Add missing header tags as per the spec (PR #1238) Add omitted tags to KNOWN_HEADER_FIELDS and VALID_HEADER_ORDER, so that AlignmentHeader.from_dict()/to_dict() will preserve all header field tags defined in the SAM specification. Addresses #1237. Exercise TP:linear in some header tests. Co-authored-by: John Marshall <jmarshall@hey.com> | 20 October 2023, 10:12:28 UTC |
| refs/tags/v0.1.1 | f3de75d | bugfix - missing header | 28 October 2009, 17:40:12 UTC |
| refs/tags/v0.1.2 | d199a15 | bugfix - compilation issues due to macros and orphan function definitions | 22 January 2010, 10:00:38 UTC |
| refs/tags/v0.10.0 | f749181 | Merge pull request #393 from pysam-developers/AH-AddFileDescriptorSupportToAlignmentFile Ah add file descriptor support to alignment file | 22 January 2017, 19:32:25 UTC |
| refs/tags/v0.11.0 | 414b8fc | Merge pull request #437 from pysam-developers/AH-add-infer-read-length split infer_query_length into infer_read_length and infer_query_lengt… | 10 April 2017, 19:21:22 UTC |
| refs/tags/v0.11.1 | a7dc426 | {AH} increase version to 0.11.1 | 23 April 2017, 21:02:26 UTC |
| refs/tags/v0.11.2 | 887b9f8 | {AH} update release notes | 12 May 2017, 19:02:04 UTC |
| refs/tags/v0.11.2.2 | d41a7c8 | {AH} increase version to 0.11.2.2 | 08 June 2017, 19:07:51 UTC |
| refs/tags/v0.12.0 | 656f299 | Fix bcf_translate to operate on INFO and FORMAT values that must be freed. Also submitted upstream to htslib. | 24 August 2017, 14:01:55 UTC |
| refs/tags/v0.12.0.1 | 13fca0d | {AH} remove config.h from tar-ball | 06 September 2017, 21:18:06 UTC |
| refs/tags/v0.13.0 | c58ad7d | {AH} upgrade travis to htslib 1.6 | 03 November 2017, 16:20:31 UTC |
| refs/tags/v0.14 | af6ff23 | Merge pull request #620 from pysam-developers/AH-add_alignmentfileheader_dict_methods {AH} add backwards compatibility functions for AlignmentHeader, fixes… | 09 February 2018, 21:48:27 UTC |
| refs/tags/v0.14.1 | 09fb70e | {AH} update NEWS | 20 March 2018, 22:07:49 UTC |
| refs/tags/v0.15.0 | bca66ee | Merge pull request #707 from kyleabeauchamp/puts_kab Fix EOF issue, part 3 | 26 July 2018, 20:04:24 UTC |
| refs/tags/v0.15.0.1 | 9d83174 | {AH} fix typo in test, update NEWS and release.rst for release | 28 July 2018, 19:49:51 UTC |
| refs/tags/v0.15.1 | c75e575 | {AH} clear up release.rst, update news for v0.15.1 release | 13 September 2018, 20:15:05 UTC |
| refs/tags/v0.15.2 | 3644505 | Merge pull request #751 from nsoranzo/remove_sudo_false Remove deprecated sudo: false from .travis.yml | 10 January 2019, 22:35:44 UTC |
| refs/tags/v0.15.3 | 859b76f | Merge pull request #829 from jmarshall/configure-env Run configure with the correct CC/CFLAGS/LDFLAGS env vars | 28 July 2019, 19:40:15 UTC |
| refs/tags/v0.15.4 | c818db5 | {AH} import utils with package name | 18 January 2020, 21:19:22 UTC |
| refs/tags/v0.16.0 | d20cad0 | Merge pull request #925 from pysam-developers/pysam-0.16-release-candidate {AH} bump version to 0.16.0 | 07 June 2020, 20:00:32 UTC |
| refs/tags/v0.16.0.1 | 746e4d9 | bump version to 0.16.0.1 to allow upload of fixed wheels to pypi | 16 June 2020, 22:52:51 UTC |
| refs/tags/v0.17.0 | 7d1a70e | restrict publish actions | 28 September 2021, 14:58:19 UTC |
| refs/tags/v0.18.0 | 1bdbcd4 | Merge pull request #1045 from erikbgithub/master baseimage for containers | 16 November 2021, 11:38:39 UTC |
| refs/tags/v0.19.0 | bc1e4de | Merge pull request #1091 from pysam-developers/v0.19.0.x V0.19.0.x | 29 March 2022, 19:10:53 UTC |
| refs/tags/v0.19.1 | 5eac009 | Merge pull request #1109 from pysam-developers/v0.19.1.x V0.19.1.x | 26 May 2022, 19:14:29 UTC |
| refs/tags/v0.2 | 8543a2c | updated documenation and MANIFEST for release 0.2 | 05 May 2010, 09:34:06 UTC |
| refs/tags/v0.20.0 | b7fd112 | Release notes updates | 28 October 2022, 13:13:05 UTC |
| refs/tags/v0.21.0 | c1869c8 | Merge pull request #1178 from pysam-developers/update-release-notes updated release notes | 01 April 2023, 21:14:24 UTC |
| refs/tags/v0.8.1 | 50698a6 | updated documentation | 21 November 2014, 21:26:02 UTC |
| refs/tags/v0.8.2 | 22990a3 | Merge pull request #78 from pysam-developers/pysam-0.8.2 Pysam 0.8.2 | 17 February 2015, 20:25:25 UTC |
| refs/tags/v0.8.3 | f8cb503 | minor changes to docs | 29 April 2015, 09:32:28 UTC |
| refs/tags/v0.8.4 | 4218671 | update docstring in setup.py for new release | 09 November 2015, 22:42:11 UTC |
| refs/tags/v0.9.0 | 9d2cb77 | {AH} fix py3 StringIO issues | 01 March 2016, 22:40:37 UTC |
| refs/tags/v0.9.1 | 0cf9d29 | {AH} add unit tests to check return type for string/byte output, closes #292 | 14 June 2016, 20:27:17 UTC |
| refs/tags/v0.9.1.1 | 25a7093 | Merge pull request #305 from pysam-developers/AH-InstallationTests Ah installation tests | 22 June 2016, 22:05:14 UTC |
| refs/tags/v0.9.1.2 | b76df75 | {AH} increase version to 0.9.1.2 | 23 June 2016, 20:14:15 UTC |
| refs/tags/v0.9.1.3 | c66e086 | Merge pull request #309 from odoublewen/patch-1 Update calignmentfile.pyx | 01 July 2016, 20:01:06 UTC |
| refs/tags/v0.9.1.4 | 004c284 | Merge pull request #313 from pysam-developers/AH-htslib-config-query Ah htslib config query | 18 July 2016, 15:01:51 UTC |
