| HEAD | 106ed78 | Support gzipped protein files as input (thanks to alienzj for the PR) | 31 October 2022, 13:52:47 UTC |
| refs/heads/gh-pages | 8be636b | Update index.html | 09 April 2022, 14:03:03 UTC |
| refs/heads/master | 106ed78 | Support gzipped protein files as input (thanks to alienzj for the PR) | 31 October 2022, 13:52:47 UTC |
| refs/tags/0.9.0 | 7c7314a | Changed pip name to checkm-genome | 04 September 2014, 21:46:17 UTC |
| refs/tags/0.9.4 | 830a0af | v0.9.4 | 09 September 2014, 01:45:01 UTC |
| refs/tags/v0.9.7 | 257b843 | Update to v0.9.7. Added unique ids to output tables. Improve quality of internal taxonomic labels. | 16 January 2015, 03:26:54 UTC |
| refs/tags/v1.0.0 | c400db4 | v1.0.0: moved to dendropy >= 4.0.0 | 11 June 2015, 07:16:42 UTC |
| refs/tags/v1.0.1 | dd0b476 | v1.0.1: fixes to ecoli test case and proper pypi installation | 12 June 2015, 01:32:29 UTC |
| refs/tags/v1.0.10 | ee3a41d | CheckM v1.0.10. Updated version number for upload to pypi. | 22 December 2017, 17:23:02 UTC |
| refs/tags/v1.0.11 | 8902888 | Fixed lineage_wf CLI bug causing crash due to missing coverage_file argument | 03 January 2018, 02:55:12 UTC |
| refs/tags/v1.0.12 | b5b04ee | Fix to properly remove temporary files. | 14 September 2018, 15:08:36 UTC |
| refs/tags/v1.0.13 | f9ad7a4 | Failed commands now exit with error code 1. Added "--force-overwrite" option to tree command. | 07 January 2019, 20:04:48 UTC |
| refs/tags/v1.0.15 | 1cda8cf | - fixed CheckM data setRoot command to work from command line (thanks to cbt for PR) - added logging to files - improved reporting of CheckM results to include timestamp - removed "--force-overwrite" option and now allow output directories to already exist | 08 August 2019, 19:00:54 UTC |
| refs/tags/v1.0.16 | 64cab7f | - made ~/.checkm the default directory for CheckM reference data - "checkm data setRoot <directory>" is no longer interactive and the directory must be given on the command line | 08 August 2019, 20:58:32 UTC |
| refs/tags/v1.0.17 | 1a93438 | fixed bug with CLI of plotting methods introduced in 1.0.16 | 10 August 2019, 15:14:00 UTC |
| refs/tags/v1.0.18 | 22b9dd8 | - fix to CLI of bin_qa_plot (thanks to Finesim97 for PR) | 11 August 2019, 18:05:14 UTC |
| refs/tags/v1.0.2 | 71f1384 | v1.0.2: fixed bug with pysam >= 0.8.0 which was effecting coverage command | 23 June 2015, 23:56:44 UTC |
| refs/tags/v1.0.3 | f351dcc | v1.0.3: compatibility with Prodigal 2.6.1 and 2.6.2 | 29 June 2015, 03:20:43 UTC |
| refs/tags/v1.0.4 | f327539 | Removed import of pylab as this may have a GTK dependency. | 11 September 2015, 01:56:37 UTC |
| refs/tags/v1.0.5 | 248664e | Updated version number. | 03 November 2015, 01:19:42 UTC |
| refs/tags/v1.0.6 | 69aebb7 | Minor bug fixes to 'test' and 'data setRoot' commands. | 23 April 2016, 22:01:20 UTC |
| refs/tags/v1.0.7 | 82cb6d9 | Fixed incorrect reporting of number of marker genes/sets for taxonomic-specific marker sets. | 02 September 2016, 19:31:24 UTC |
| refs/tags/v1.0.8 | 24d0876 | Fix for the lineage_wf command that was causing an invalid marker set to be selected in rare cases when using the reduced_tree flag. | 09 November 2017, 18:53:11 UTC |
| refs/tags/v1.0.9 | d8ad828 | Merge branch 'master' of github.com:Ecogenomics/CheckM | 22 December 2017, 17:12:42 UTC |
| refs/tags/v1.1.0 | c69f3bf | Update README.md | 01 December 2019, 17:25:35 UTC |
| refs/tags/v1.1.1 | 91eef2f | Updated version number. | 04 December 2019, 17:23:54 UTC |
| refs/tags/v1.1.10 | d74bb68 | Merge branch 'master' of https://github.com/Ecogenomics/CheckM | 21 April 2022, 22:40:24 UTC |
| refs/tags/v1.1.11 | d74bb68 | Merge branch 'master' of https://github.com/Ecogenomics/CheckM | 21 April 2022, 22:40:24 UTC |
| refs/tags/v1.1.2 | 3eac958 | Minor bug fixes to setting up reference data. | 22 December 2019, 16:04:46 UTC |
| refs/tags/v1.1.3 | 2a0766e | Minor bug fixes to handle invalid GFF files produced by Prodigal, and compatibility with Matplotlib changes | 09 July 2020, 15:07:46 UTC |
| refs/tags/v1.1.5 | 9209dff | added maxibor's PR to allow path to DATA_CONFIG file to be set | 09 April 2022, 01:27:17 UTC |
| refs/tags/v1.1.6 | 2c27394 | Allow CheckM data path to be set through the environmental variable CHECKM_DATA_PATH | 09 April 2022, 03:47:43 UTC |
| refs/tags/v1.1.7 | da43034 | - accepted PRs allowing bins to be specified via an input table, fixing import error with prettytable, and enhancing identification of bins via their extension | 10 April 2022, 14:52:17 UTC |
| refs/tags/v1.1.8 | da43034 | - accepted PRs allowing bins to be specified via an input table, fixing import error with prettytable, and enhancing identification of bins via their extension | 10 April 2022, 14:52:17 UTC |
| refs/tags/v1.1.9 | 40720cc | fixed support for gzip input FASTA files | 14 April 2022, 19:41:34 UTC |
| refs/tags/v1.2.0 | 1343a1c | Modified how bin IDs are identified to improve output tables | 30 April 2022, 17:44:24 UTC |
| refs/tags/v1.2.1 | 8b42a8c | Bumped version number. | 03 August 2022, 22:28:24 UTC |
| refs/tags/v1.2.2 | 106ed78 | Support gzipped protein files as input (thanks to alienzj for the PR) | 31 October 2022, 13:52:47 UTC |
