| HEAD | 4e60002 | Merge pull request #125 from hall-lab/new_exclude Add new exclude files | 08 February 2018, 19:09:37 UTC |
| refs/heads/bamcheck | 458ab25 | check input BAM for EOF marker in speedseq align | 15 January 2015, 05:07:22 UTC |
| refs/heads/bufferalign | d3f558b | fix bug in buffered local alignment | 07 January 2015, 23:16:49 UTC |
| refs/heads/cnvnator_windows | e221fbb | allow user-specified window size #38 | 27 October 2015, 12:46:58 UTC |
| refs/heads/dev | 9b8aed0 | verbose output type | 09 January 2015, 23:00:53 UTC |
| refs/heads/gms | 1aa63c9 | add back to gms | 17 August 2015, 18:21:17 UTC |
| refs/heads/gtex | 62732f4 | updated doc | 16 December 2014, 19:19:34 UTC |
| refs/heads/hall | 1b9f02e | update with current | 17 December 2015, 17:16:26 UTC |
| refs/heads/install | bb2e06f | update make | 13 March 2015, 17:08:00 UTC |
| refs/heads/lumpy3cand | c9f3fe2 | don't sort with bedtools, since it chokes on POS 0 variants https://github.com/arq5x/bedtools2/issues/177 | 04 February 2015, 07:59:11 UTC |
| refs/heads/master | 4e60002 | Merge pull request #125 from hall-lab/new_exclude Add new exclude files | 08 February 2018, 19:09:37 UTC |
| refs/heads/parallel | bf2a08c | update parallel | 13 March 2015, 14:19:10 UTC |
| refs/heads/realign_null_bam | a5afd22 | option to not write full BAM in realign module (only write splitter and discordants) | 10 December 2014, 20:31:39 UTC |
| refs/heads/v0.1.2_cram_support | c411756 | Merge branch 'v0.1.2_cram_support' of github.com:hall-lab/speedseq into v0.1.2_cram_support | 17 April 2017, 23:16:48 UTC |
| refs/tags/v0.0.2 | 95f261a | bump version | 08 November 2014, 18:25:45 UTC |
| refs/tags/v0.0.3 | b37dea0 | Update README.md | 14 March 2015, 23:32:06 UTC |
| refs/tags/v0.0.3a | 3fc4617 | Update README.md formatting | 29 March 2015, 18:11:41 UTC |
| refs/tags/v0.1.0 | 790b669 | merge developmental features to master | 17 August 2015, 18:16:32 UTC |
| refs/tags/v0.1.1 | 3a87538 | FAQ to address #31 and #94 | 14 December 2016, 16:44:57 UTC |
| refs/tags/v0.1.2 | 75863fa | bump version tags | 09 January 2017, 23:19:19 UTC |
