| HEAD | 575507b | add option to not show spinner | 04 October 2016, 19:03:16 UTC |
| refs/heads/devel | bf56d51 | adding in smith-waterman adapter search | 15 June 2011, 20:08:12 UTC |
| refs/heads/huge_changes | 853936f | adding logic to avoid cases where no good quality bases are present | 10 March 2011, 17:18:36 UTC |
| refs/heads/master | 575507b | add option to not show spinner | 04 October 2016, 19:03:16 UTC |
| refs/heads/v0.1 | 4233a59 | Trying to make readme look better on github | 12 March 2011, 21:00:48 UTC |
| refs/tags/FirstSuccessfullCompile | e0d7cfe | made the help screen look a little nicer | 12 March 2011, 06:02:04 UTC |
| refs/tags/Original | 16f9d33 | initial commit | 09 March 2011, 23:55:17 UTC |
| refs/tags/v0.0.1 | e629495 | fixed makefile issue | 12 March 2011, 08:10:24 UTC |
| refs/tags/v0.1 | 4fbfdda | tested and works on some simple cases now | 12 March 2011, 20:58:23 UTC |
| refs/tags/v0.1.1 | de5480b | adding method to dump human readable alignments for qualitative checking | 12 March 2011, 23:50:50 UTC |
| refs/tags/v0.1.2 | e522d73 | Fixed bug where human readable dump file wasn't closed on program exit, resulting in a malformed gzipped file | 13 March 2011, 01:02:36 UTC |
| refs/tags/v0.1.3 | 8652e8b | updating README file | 13 March 2011, 05:17:07 UTC |
| refs/tags/v0.1.4 | bf20265 | updating readme and changing a floor to ceil for the min_match array | 13 March 2011, 05:34:15 UTC |
| refs/tags/v0.1.5 | a1e1d38 | fixing issue where when one read is shorter than the other before trimming | 14 March 2011, 22:31:21 UTC |
| refs/tags/v0.2 | 14c694c | adding clean script to quickly clean up test output | 16 June 2011, 05:11:32 UTC |
| refs/tags/v0.2.1 | e09ee6b | adding in scripts for better testing | 16 June 2011, 05:57:38 UTC |
| refs/tags/v0.2.10 | 6d2f669 | fixed a bug where resulting in high probability of discarding reads with low quality bases at the end | 06 July 2011, 02:31:27 UTC |
| refs/tags/v0.2.2 | 6871345 | also memsetting the merged sequence just to be safe | 16 June 2011, 06:32:26 UTC |
| refs/tags/v0.2.3 | a0da493 | updated readme | 28 June 2011, 20:14:55 UTC |
| refs/tags/v0.2.4 | 80f75ab | fixed a bug where unsigned ints were used for a minimum score that should have been negative | 28 June 2011, 23:34:10 UTC |
| refs/tags/v0.2.5 | 8fed36b | Fixed an important bug with forced overlap after adapter alignment. This will result in more reads passing. Also modifying defaults slightly | 29 June 2011, 23:08:15 UTC |
| refs/tags/v0.2.6 | 01f7eb4 | fixing issue where sequences could be different length from adapters, and an improvement for detecting more potential adapters through read overlap | 01 July 2011, 23:26:18 UTC |
| refs/tags/v0.2.6.1 | 0c23eb1 | reverting makefile to 03 optomization flags | 02 July 2011, 00:13:21 UTC |
| refs/tags/v0.2.6.2 | 2ede58a | adding warning about new line at the end of a file | 02 July 2011, 01:11:44 UTC |
| refs/tags/v0.2.7 | 96ce1b8 | updating documentation to reflect help, and clarifying which adapters the defaults are in both the help and the program | 02 July 2011, 01:18:59 UTC |
| refs/tags/v0.2.7.1 | 96ce1b8 | updating documentation to reflect help, and clarifying which adapters the defaults are in both the help and the program | 02 July 2011, 01:18:59 UTC |
| refs/tags/v0.2.8 | 9abe976 | making defaults more sensitive to adapters | 05 July 2011, 21:51:02 UTC |
| refs/tags/v0.2.8.1 | 1d97f01 | updating readme to reflect currently available options | 05 July 2011, 22:26:15 UTC |
| refs/tags/v0.2.9 | 6a7d3aa | now trim parts of reads that do not overlap when performing adapter trimming as well as read merging | 05 July 2011, 23:43:06 UTC |
| refs/tags/v0.3 | 56116c6 | adding in the shorter test files as well | 07 July 2011, 04:29:41 UTC |
| refs/tags/v0.3.1 | 3e3696c | updating readme | 07 July 2011, 04:45:27 UTC |
| refs/tags/v0.3.2 | cfaafc9 | updating documentation" ; | 07 July 2011, 15:32:57 UTC |
| refs/tags/v0.4 | d8c802d | updating README with new test | 15 September 2011, 23:31:57 UTC |
| refs/tags/v1.1 | b5606dd | added in checks to make sure that quality is above minimal threshold, and below maximal threshold | 31 May 2013, 17:44:45 UTC |
| refs/tags/v1.2 | bda7a3d | Merge pull request #30 from udo-stenzel/master changed update_spinner to 'static inline' | 18 March 2016, 17:08:25 UTC |
| refs/tags/v1.3.2 | 575507b | add option to not show spinner | 04 October 2016, 19:03:16 UTC |
