| HEAD | 565e182 | Update for v2.1.6 | 19 July 2023, 04:24:28 UTC |
| refs/heads/develop | 1ce068c | fix_targetfile.py W.I.P | 31 August 2022, 04:24:11 UTC |
| refs/heads/develop_1.3 | 6c6ec6b | Fix indent take 2 | 09 September 2020, 05:10:23 UTC |
| refs/heads/develop_exonerate_filter | babf87a | Fix BLASTx to work with reads with /1 /2 suffix | 31 January 2023, 02:42:15 UTC |
| refs/heads/master | 565e182 | Update for v2.1.6 | 19 July 2023, 04:24:28 UTC |
| refs/heads/nextflow | 1917c6b | Write translated target file directly to sample dir | 05 September 2022, 02:05:11 UTC |
| refs/tags/0.0.1 | 2a9cd61 | added links to readme | 18 March 2014, 14:41:57 UTC |
| refs/tags/0.0.2 | caa3eab | updated hybseq_summary Now more general | 28 March 2014, 15:16:12 UTC |
| refs/tags/0.1.0 | 211c9e0 | Merge pull request #1 from mehmattski/reads-first Reads first | 11 July 2014, 16:07:44 UTC |
| refs/tags/0.2.0 | 1ffe52c | Changes suggested by polymathcat More explicit about the path to the reads_first script, and adding makeblastdb to the list of necessary executables. | 07 October 2014, 03:31:48 UTC |
| refs/tags/v0.3.0 | 73f3b83 | Edit Readme, add heatmap PNG | 14 May 2015, 16:51:10 UTC |
| refs/tags/v0.4.0 | a20dda5 | Merge branch 'develop' of github.com:mossmatters/HybSeqPipeline into develop | 15 December 2015, 20:13:03 UTC |
| refs/tags/v0.4.1 | 110efe3 | Even more consistent full length contig decisions | 31 December 2015, 00:38:49 UTC |
| refs/tags/v0.4.2 | 110efe3 | Even more consistent full length contig decisions | 31 December 2015, 00:38:49 UTC |
| refs/tags/v0.4.3 | cd39236 | credit to Elliot for logo | 13 January 2016, 00:15:50 UTC |
| refs/tags/v1.0.0 | d614bbb | Moved exonerate commands to DEBUG to not clutter logs. | 11 February 2016, 23:12:16 UTC |
| refs/tags/v1.1 | 57b48a1 | Add citation information | 22 July 2016, 15:06:06 UTC |
| refs/tags/v1.2.0 | df6e2ed | More README formatting changes | 09 May 2017, 03:43:53 UTC |
| refs/tags/v1.3 | c3597ee | Fix issue 27: No check for strand when there is only one hit | 30 January 2018, 17:07:32 UTC |
| refs/tags/v1.3.1 | 2118bb2 | Reverting changes to exonerate_hits.py (Issue 27) | 08 August 2018, 14:43:03 UTC |
| refs/tags/v1.3.1_final | 6c6ec6b | Fix indent take 2 | 09 September 2020, 05:10:23 UTC |
| refs/tags/v2.0.2 | fbf26d8 | Merge remote-tracking branch 'origin/master' | 13 November 2022, 22:48:09 UTC |
| refs/tags/v2.1.1 | 274dcbe | Version 2.1.1; run DIAMOND with native --threads parameter | 12 December 2022, 00:16:20 UTC |
| refs/tags/v2.1.3 | 9af301c | Update to 2.1.3 | 27 March 2023, 03:11:49 UTC |
| refs/tags/v2.1.4 | 643e963 | Update to 2.1.4 with bugfix for `--run_intronerate` | 05 June 2023, 04:51:52 UTC |
| refs/tags/v2.1.5 | a77fada | Notes for version 2.1.5 | 21 June 2023, 05:57:03 UTC |
| refs/tags/v2.1.6 | 565e182 | Update for v2.1.6 | 19 July 2023, 04:24:28 UTC |
