https://github.com/cran/Matrix
Tip revision: d91a3f2149572d5e4801cb9d4c28d55ffd3642e8 authored by Martin Maechler on 22 March 2024, 09:08:25 UTC
version 1.7-0
version 1.7-0
Tip revision: d91a3f2
NAMESPACE
useDynLib(Matrix, .registration = TRUE)
## ==== IMPORTS ========================================================
## Try to import all of the functions that we need
## (including generic functions for which we define methods),
## but not more ...
importFrom("grDevices", colorRampPalette, grey)
importFrom("graphics", image, par)
importFrom("grid", convertHeight, convertWidth, current.viewport,
gpar, grid.rect)
importFrom("lattice", levelplot, panel.levelplot.raster)
importFrom("methods", .hasSlot, .selectSuperClasses, .slotNames,
Arith, Compare, Complex, Logic, Math, Math2, Ops, Summary,
as, callGeneric, callNextMethod, canCoerce, cbind2, coerce,
extends, getClassDef, getGroupMembers,
is, isClassDef, kronecker, new, rbind2,
setAs, setClass, setClassUnion, setGeneric, setMethod,
setOldClass, show, slot, "slot<-", slotNames, validObject)
importFrom("stats", contr.SAS, contr.helmert, contr.poly, contr.sum,
contr.treatment, "contrasts<-", cov2cor , diffinv, model.frame,
rnorm, runif, symnum, terms, toeplitz, update)
importFrom("utils", capture.output, head, head.matrix, str, tail, tail.matrix)
## ==== EXPORTS ========================================================
## ---- Non-generic functions ------------------------------------------
export(.M2C,
.M2R,
.M2T,
.M2V,
.M2diag,
.M2gen,
.M2kind,
.M2m,
.M2packed,
.M2sym,
.M2tri,
.M2unpacked,
.M2v,
.bdiag,
.dense2sparse,
.diag.dsC,
.diag2dense,
.diag2sparse,
.diagN2U,
.diagU2N,
.ind2dense,
.ind2sparse,
.formatSparseSimple,
.m2V,
.m2dense,
.m2sparse,
.sparse2dense,
.sparseDiagonal,
.symDiagonal,
.trDiagonal,
.solve.dgC.chol,
.solve.dgC.lu,
.solve.dgC.qr,
.tCRT,
.updateCHMfactor,
.validateCsparse,
Diagonal,
Hilbert,
KhatriRao,
Matrix,
Matrix.Version,
MatrixClass,
T2graph,
abIseq,
abIseq1,
aggregateT,
anyDuplicatedT,
asPerm,
asUniqueT,
bandSparse,
bdiag,
## 'c' dispatches on first argument only, so allow direct method calls :
## c.Matrix, # not yet (see below)
c.sparseVector,
colScale,
condest,
det,
diagN2U,
diagU2N,
dimScale,
dmperm,
drop0,
fac2Sparse,
fac2sparse,
formatSpMatrix,
formatSparseM,
graph2T,
invPerm,
invertPerm,
is.null.DN,
isLDL,
isPerm,
isUniqueT,
mat2triplet,
nearPD,
onenormest,
qr2rankMatrix,
qrR,
printSpMatrix,
printSpMatrix2,
rankMatrix,
readHB,
readMM,
rep2abI,
rowScale,
rsparsematrix,
signPerm,
spMatrix,
sparse.model.matrix,
sparseMatrix,
sparseVector)
## Deprecated since Matrix 1.5-4 {Apr 2023}
export(..2dge, .C2nC, .T2Cmat, .asmatrix, .dense2sy,
.diag2mat, .diag2sT, .diag2tT, .dsy2dsp, .dsy2mat, .dxC2mat,
.m2dgC, .m2lgC, .m2ngC, .m2ngCn, .m2ngTn, .n2dgT, .nC2d, .nC2l)
## Defunct since Matrix 1.3-3 {May 2021}
export(cBind, rBind)
## Redundant now but not yet deprecated ...
export(.CR2RC, .CR2T, .SuiteSparse_version, .T2CR, .dense2g, .dense2kind,
.dense2m, .dense2v, .sparse2g, .sparse2kind, .sparse2m, .sparse2v,
.tCR2RC, uniqTsparse)
## ---- S3 generic functions -------------------------------------------
## export() # {probably none ever}
## ---- S3 methods -----------------------------------------------------
## So that dispatch also happens inside of 'base' functions:
S3method(as.matrix, Matrix)
S3method(as.matrix, sparseVector)
S3method(as.array, Matrix)
S3method(as.array, sparseVector)
## Because S4 dispatch is "hard" for c():
## S3method(c, Matrix) # breaks 7 rev. dep. {2023-09-08}
S3method(c, sparseVector)
S3method(c, abIndex)
## For printing return values of our summary() methods:
S3method(print, diagSummary)
S3method(print, sparseSummary)
## ---- S4 generic functions, methods ----------------------------------
export(crossprod, tcrossprod) # *necessary* (once .Primitive in base)
## MJ: why these and not also export(dim, ...) which are also primitive ??
## From 'Matrix' {no need to also export(); see WRE}
exportMethods("%&%",
BunchKaufman,
Cholesky,
Schur,
band,
expand,
expand1,
expand2,
expm,
facmul,
forceSymmetric,
isDiagonal,
isTriangular,
lu,
nnzero,
pack,
skewpart,
symmpart,
tril,
triu,
unpack,
updown,
writeMM)
## From 'base'
exportMethods("!",
"%*%",
"+",
all.equal,
as.array,
as.complex,
as.integer,
as.logical,
as.matrix,
as.numeric,
as.vector,
chol,
chol2inv,
colMeans,
colSums,
crossprod,
determinant,
diag,
"diag<-",
diff,
dim,
"dim<-",
dimnames,
"dimnames<-",
drop,
format,
is.finite,
is.infinite,
is.na,
isSymmetric,
kronecker,
length,
mean,
norm,
print,
qr,
qr.Q,
qr.R,
qr.X,
qr.coef,
qr.fitted,
qr.resid,
qr.qty,
qr.qy,
rcond,
rep,
rowMeans,
rowSums,
solve,
summary,
t,
tcrossprod,
unname,
which,
zapsmall)
## From 'graphics'
exportMethods(image)
## From 'methods'
exportMethods(Arith, Compare, Logic, Math, Math2, Ops, Summary,
cbind2, coerce, rbind2, show)
## From 'stats'
exportMethods(cov2cor, toeplitz, update)
## From 'utils'
exportMethods(head, tail)
## ---- S4 CLASSES -----------------------------------------------------
exportClasses(Matrix, # and its subclasses .............................
generalMatrix,
symmetricMatrix,
triangularMatrix,
diagonalMatrix,
denseMatrix,
unpackedMatrix,
packedMatrix,
sparseMatrix,
CsparseMatrix,
RsparseMatrix,
TsparseMatrix,
nMatrix,
ndenseMatrix,
ngeMatrix,
nsyMatrix,
nspMatrix,
ntrMatrix,
ntpMatrix,
nsparseMatrix,
ngCMatrix,
ngRMatrix,
ngTMatrix,
nsCMatrix,
nsRMatrix,
nsTMatrix,
ntCMatrix,
ntRMatrix,
ntTMatrix,
ndiMatrix,
lMatrix,
ldenseMatrix,
lgeMatrix,
lsyMatrix,
lspMatrix,
ltrMatrix,
ltpMatrix,
lsparseMatrix,
lgCMatrix,
lgRMatrix,
lgTMatrix,
lsCMatrix,
lsRMatrix,
lsTMatrix,
ltCMatrix,
ltRMatrix,
ltTMatrix,
ldiMatrix,
iMatrix,
## idenseMatrix,
## igeMatrix,
## isyMatrix,
## ispMatrix,
## itrMatrix,
## itpMatrix,
## isparseMatrix,
## igCMatrix,
## igRMatrix,
## igTMatrix,
## isCMatrix,
## isRMatrix,
## isTMatrix,
## itCMatrix,
## itRMatrix,
## itTMatrix,
## idiMatrix,
dMatrix,
ddenseMatrix,
dgeMatrix,
dsyMatrix,
dspMatrix,
dpoMatrix,
dppMatrix,
corMatrix,
copMatrix,
dtrMatrix,
dtpMatrix,
dsparseMatrix,
dgCMatrix,
dgRMatrix,
dgTMatrix,
dsCMatrix,
dsRMatrix,
dsTMatrix,
dtCMatrix,
dtRMatrix,
dtTMatrix,
ddiMatrix,
zMatrix,
## zdenseMatrix,
## zgeMatrix,
## zsyMatrix,
## zspMatrix,
## ztrMatrix,
## ztpMatrix,
## zsparseMatrix,
## zgCMatrix,
## zgRMatrix,
## zgTMatrix,
## zsCMatrix,
## zsRMatrix,
## zsTMatrix,
## ztCMatrix,
## ztRMatrix,
## ztTMatrix,
## zdiMatrix,
indMatrix,
pMatrix,
MatrixFactorization, # and its subclasses ................
LU,
denseLU,
sparseLU,
QR,
## denseQR,
sparseQR,
SchurFactorization,
Schur,
BunchKaufmanFactorization,
BunchKaufman,
pBunchKaufman,
CholeskyFactorization,
Cholesky,
pCholesky,
CHMfactor,
CHMsuper,
dCHMsuper,
nCHMsuper, # unused
CHMsimpl,
dCHMsimpl,
nCHMsimpl, # unused
sparseVector, # and its subclasses .......................
nsparseVector,
lsparseVector,
isparseVector,
dsparseVector,
zsparseVector,
## MJ: aim to deprecate and eventually remove these
## (except perhaps 'index')
abIndex,
atomicVector,
compMatrix,
index,
number,
replValue,
rleDiff)