https://github.com/cran/onemap
Tip revision: 8039f26e9e0b54518a454d0c367749eedede62ec authored by Cristiane Taniguti on 26 November 2022, 04:00:02 UTC
version 3.0.0
version 3.0.0
Tip revision: 8039f26
DESCRIPTION
Package: onemap
Title: Construction of Genetic Maps in Experimental Crosses
Version: 3.0.0
Description: Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.
Authors@R: c(person("Gabriel",
"Margarido",
role = "aut",
email = "gramarga@usp.br"),
person("Marcelo",
"Mollinari",
role = "aut"),
person("Cristiane",
"Taniguti",
role=c("ctb", "cre"),
email="chtaniguti@tamu.edu"),
person("Getulio",
"Ferreira",
role="ctb"),
person("Rodrigo",
"Amadeu",
role = "ctb"),
person("Karl",
"Broman",
role = "ctb"),
person(given = "Katharine",
family = "Preedy",
role = c("ctb", "cph"),
comment = "MDS ordering algorithm"),
person(given = "Bastian",
family = "Schiffthaler",
role = c("ctb","cph"),
comment = "HMM parallelization"),
person("Augusto",
"Garcia",
role = c("aut", "ctb"),
email = "augusto.garcia@usp.br"))
Author: Gabriel Margarido [aut],
Marcelo Mollinari [aut],
Cristiane Taniguti [ctb, cre],
Getulio Ferreira [ctb],
Rodrigo Amadeu [ctb],
Karl Broman [ctb],
Katharine Preedy [ctb, cph] (MDS ordering algorithm),
Bastian Schiffthaler [ctb, cph] (HMM parallelization),
Augusto Garcia [aut, ctb]
LinkingTo: Rcpp (>= 0.10.5)
Depends: R (>= 3.6.0)
Imports: ggplot2 (>= 2.2.1), plotly (>= 4.7.1), reshape2 (>= 1.4.1),
Rcpp (>= 0.10.5), graphics, methods, stats, utils, grDevices,
smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr,
RColorBrewer, dendextend, rebus, vcfR (>= 1.6.0)
Suggests: knitr (>= 1.10), rmarkdown, testthat, stringr
VignetteBuilder: knitr
Encoding: UTF-8
License: GPL-3
URL: https://github.com/augusto-garcia/onemap
BugReports: https://github.com/augusto-garcia/onemap/wiki
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Repository: CRAN
Packaged: 2022-11-26 04:36:06 UTC; chtan
NeedsCompilation: yes
Date/Publication: 2022-11-26 05:00:02 UTC
RoxygenNote: 7.1.2
biocViews: