https://bitbucket.org/cmungall/galaxy-obo
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Tip revision: 1197c6567ca05d5957fb4a5eb2c7543fa7eff307 authored by Nate Coraor on 23 January 2012, 19:22:50 UTC
Closed branch sam_merge_patch
Tip revision: 1197c65
lastz_seqs.loc.sample
#This is a sample file distributed with Galaxy that enables tools
#to use a directory of 2bit genome files for use with Lastz. You will
#need to supply these files and then create a lastz_seqs.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The lastz_seqs.loc
#file has this format (white space characters are TAB characters):
#
#<unique_build_id>   <display_name>   <file_path>
#
#So, for example, if your lastz_seqs.loc began like this:
#
#hg18   Human (Homo sapiens): hg18   /depot/data2/galaxy/twobit/hg18.2bit
#hg19   Human (Homo sapiens): hg19   /depot/data2/galaxy/twobit/hg19.2bit
#mm9    Mouse (Mus musculus): mm9    /depot/data2/galaxy/twobit/mm9.2bit
#
#then your /depot/data2/galaxy/twobit/ directory
#would need to contain the following 2bit files:
#
#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 hg18.2bit
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
#
#Your lastz_seqs.loc file should include an entry per line for 
#each file you have stored that you want to be available. Note that 
#your files should all have the extension '2bit'.
#
#Note that for backwards compatibility with workflows, the unique ID of
#an entry must be the path that was in the original loc file, because that
#is the value stored in the workflow for that parameter. 
#
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