https://bitbucket.org/cmungall/galaxy-obo
Tip revision: 1197c6567ca05d5957fb4a5eb2c7543fa7eff307 authored by Nate Coraor on 23 January 2012, 19:22:50 UTC
Closed branch sam_merge_patch
Closed branch sam_merge_patch
Tip revision: 1197c65
phastOdds.loc.sample
#This is a sample file distributed with Galaxy that is used by the
#phastOdds scores tool. The phastOdds.loc file has this format (white space
#characters are TAB characters):
#
#<build> <description> <path to phastOdds score files>
#
#So, for example, if you had hg17 ENCODE regions only, SEP-2005 tba.v2 alignments
#stored in /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds,
#then the phastOdds.loc entry would look like this:
#
#hg17 ENCODE regions only, SEP-2005 tba.v2 alignments /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds
#
#and your /depot/data2/galaxy/phastOdds_precomputed/ directory would
#contain all of your alignment files (e.g.):
#
#-rw-r--r-- 1 james g2cache 56555036 2006-02-22 18:26 encode_SEP-2005_tba.v2_phastOdds.h5
#-rw-r--r-- 1 james g2cache 1367 2006-02-08 12:23 encode_SEP-2005_tba.v2_phastOdds.mapping.bed
#...etc...
#
#Your phastOdds.loc file should include an entry per line for each phastOdds
#file you have stored.