https://github.com/genn-team/genn
Tip revision: 7988836ffe917ab5d666d405f7f2c33065da9856 authored by neworderofjamie on 07 November 2019, 13:52:22 UTC
Added NeuronModels::PoissonNewAuto
Added NeuronModels::PoissonNewAuto
Tip revision: 7988836
setup.py
#!/usr/bin/env python
import numpy as np
import os
import sys
from copy import deepcopy
from platform import system
from setuptools import setup, find_packages, Extension
from setuptools.command.build_ext import build_ext
from generate_swig_interfaces import generateConfigs
# Get CUDA path from environment variable - setting this up is a required CUDA post-install step
cuda_path = os.environ.get("CUDA_PATH")
# Is CUDA installed?
cuda_installed = cuda_path is not None and os.path.exists(cuda_path)
mac_os_x = system() == "Darwin"
linux = system() == "Linux"
windows = system() == "Windows"
genn_path = os.path.dirname(os.path.abspath(__file__))
numpy_path = os.path.join(os.path.dirname(np.__file__))
genn_wrapper_path = os.path.join(genn_path, "pygenn", "genn_wrapper")
genn_wrapper_include = os.path.join(genn_wrapper_path, "include")
genn_wrapper_swig = os.path.join(genn_wrapper_path, "swig")
genn_wrapper_generated = os.path.join(genn_wrapper_path, "generated")
genn_include = os.path.join(genn_path, "include", "genn", "genn")
genn_third_party_include = os.path.join(genn_path, "include", "genn", "third_party")
swig_opts = ["-c++", "-relativeimport", "-outdir", genn_wrapper_path, "-I" + genn_wrapper_include,
"-I" + genn_wrapper_generated, "-I" + genn_wrapper_swig]
include_dirs = [genn_wrapper_include, genn_wrapper_generated,
os.path.join(numpy_path, "core", "include")]
# If we are building for Python 3, add SWIG option (otherwise imports get broken)
# **YUCK** why doesn't setuptools do this automatically!?
if sys.version_info > (3, 0):
swig_opts.append("-py3")
# Build dictionary of kwargs to apply to all modules
extension_kwargs = {
"swig_opts": swig_opts,
"include_dirs": include_dirs,
"library_dirs": [genn_wrapper_path],
"extra_compile_args" : ["/wd\"4251\""] if windows else ["-std=c++11"],
"extra_link_args": []}
# Always package LibGeNN
package_data = ["genn_wrapper/genn_Release_DLL.*"] if windows else ["genn_wrapper/libgenn_dynamic.*"]
# Copy dictionary and add libGeNN to apply to all modules that link against GeNN
genn_extension_kwargs = deepcopy(extension_kwargs)
genn_extension_kwargs["libraries"] = ["genn_Release_DLL"] if windows else ["genn_dynamic"]
genn_extension_kwargs["include_dirs"].extend([genn_include, genn_third_party_include])
genn_extension_kwargs["swig_opts"].append("-I" + genn_include)
genn_extension_kwargs["define_macros"] = [("LINKING_GENN_DLL", "1"), ("LINKING_BACKEND_DLL", "1")]
# On Linux, we want to add extension directory i.e. $ORIGIN to runtime
# directories so libGeNN and backends can be found wherever package is installed
if linux:
genn_extension_kwargs["runtime_library_dirs"] = ["$ORIGIN"]
# By default build single-threaded CPU backend
backends = [("single_threaded_cpu", "SingleThreadedCPU", {})]
# If CUDA was found, add backend configuration
if cuda_installed:
# Get CUDA library directory
if mac_os_x:
cuda_library_dir = os.path.join(cuda_path, "lib")
elif windows:
cuda_library_dir = os.path.join(cuda_path, "lib", "x64")
else:
cuda_library_dir = os.path.join(cuda_path, "lib64")
# Add backend
# **NOTE** on Mac OS X, a)runtime_library_dirs doesn't work b)setting rpath is required to find CUDA
backends.append(("cuda", "CUDA",
{"libraries": ["cuda", "cudart"],
"include_dirs": [os.path.join(cuda_path, "include")],
"library_dirs": [cuda_library_dir],
"extra_link_args": ["-Wl,-rpath," + cuda_library_dir] if mac_os_x else []}))
# Before building extension, generate auto-generated parts of genn_wrapper
generateConfigs(genn_path, backends)
# Create list of extension modules required to wrap utilities and various libGeNN namespaces
ext_modules = [Extension('_StlContainers', ["pygenn/genn_wrapper/generated/StlContainers.i"], **extension_kwargs),
Extension('_SharedLibraryModelNumpy', ["pygenn/genn_wrapper/generated/SharedLibraryModelNumpy.i"], **extension_kwargs),
Extension('_genn_wrapper', ["pygenn/genn_wrapper/generated/genn_wrapper.i"], **genn_extension_kwargs),
Extension('_Snippet', ["pygenn/genn_wrapper/swig/Snippet.i"], **genn_extension_kwargs),
Extension('_Models', ["pygenn/genn_wrapper/swig/Models.i"], **genn_extension_kwargs),
Extension('_InitVarSnippet', ["pygenn/genn_wrapper/generated/InitVarSnippet.i", "pygenn/genn_wrapper/generated/initVarSnippetCustom.cc"], **genn_extension_kwargs),
Extension('_InitSparseConnectivitySnippet', ["pygenn/genn_wrapper/generated/InitSparseConnectivitySnippet.i", "pygenn/genn_wrapper/generated/initSparseConnectivitySnippetCustom.cc"], **genn_extension_kwargs),
Extension('_NeuronModels', ["pygenn/genn_wrapper/generated/NeuronModels.i", "pygenn/genn_wrapper/generated/neuronModelsCustom.cc"], **genn_extension_kwargs),
Extension('_PostsynapticModels', ["pygenn/genn_wrapper/generated/PostsynapticModels.i", "pygenn/genn_wrapper/generated/postsynapticModelsCustom.cc"], **genn_extension_kwargs),
Extension('_WeightUpdateModels', ["pygenn/genn_wrapper/generated/WeightUpdateModels.i", "pygenn/genn_wrapper/generated/weightUpdateModelsCustom.cc"], **genn_extension_kwargs),
Extension('_CurrentSourceModels', ["pygenn/genn_wrapper/generated/CurrentSourceModels.i", "pygenn/genn_wrapper/generated/currentSourceModelsCustom.cc"], **genn_extension_kwargs)]
# Loop through namespaces of supported backends
for filename, namespace, kwargs in backends:
# Take a copy of the standard extension kwargs
backend_extension_kwargs = deepcopy(genn_extension_kwargs)
# Extend any settings specified by backend
for n, v in kwargs.items():
backend_extension_kwargs[n].extend(v)
# Add relocatable version of backend library to libraries
# **NOTE** this is added BEFORE libGeNN as this library needs symbols FROM libGeNN
if windows:
backend_extension_kwargs["libraries"].insert(0, "genn_" + filename + "_backend_Release_DLL")
package_data.append("genn_wrapper/genn_" + filename + "_backend_Release_DLL.*")
else:
backend_extension_kwargs["libraries"].insert(0, "genn_" + filename + "_backend_dynamic")
package_data.append("genn_wrapper/libgenn_" + filename + "_backend_dynamic.*")
# Add backend include directory to both SWIG and C++ compiler options
backend_include_dir = os.path.join(genn_path, "include", "genn", "backends", filename)
backend_extension_kwargs["include_dirs"].append(backend_include_dir)
backend_extension_kwargs["swig_opts"].append("-I" + backend_include_dir)
# Add extension to list
ext_modules.append(Extension("_" + namespace + "Backend", ["pygenn/genn_wrapper/generated/" + namespace + "Backend.i"],
**backend_extension_kwargs))
setup(name = "pygenn",
version = "0.2",
packages = find_packages(),
package_data={"pygenn": package_data},
url="https://github.com/genn-team/genn",
author="University of Sussex",
description="Python interface to the GeNN simulator",
ext_package="pygenn.genn_wrapper",
ext_modules=ext_modules,
# Requirements
install_requires=["numpy>1.6, < 1.15", "six"],
zip_safe=False, # Partly for performance reasons
)