tags
partition_finder.tmproj
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partfinder.log
example/analysis
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programs/phyml_source/build/
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example/results.bin
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examples/nucleotide/best_scheme_GTR+G.txt

examples/nucleotide/best_scheme_GTR+I+G.txt

examples/nucleotide/best_scheme_JC.txt

examples/nucleotide/best_scheme_all_models.txt

examples/aminoacid/best_scheme_greedy.txt

examples/aminoacid/Als_etal_2004.phy_phyml_lk.txt

examples/aminoacid/Als_etal_2004.phy_phyml_stats.txt

examples/aminoacid/Als_etal_2004.phy_phyml_tree.txt

examples/aminoacid/best_scheme_kmeans_site_likelihoods.txt

examples/aminoacid/best_scheme_kmeans_site_lnl_genes.txt

examples/aminoacid/filtered_source.phy_phyml_tree.txt

examples/nucleotide/best_scheme_greedy_codon_genes.txt

examples/nucleotide/best_scheme_greedy_genes.txt

examples/aminoacid/best_scheme_raxml_site_lnl_genes.txt

examples/nucleotide/test.phy.GENE.8
examples/nucleotide/test.phy.reduced
examples/nucleotide/RAxML_info.partitions
examples/nucleotide/best_scheme_all_models_kmeans_wss.txt
examples/nucleotide/raxml_def_all_models_wss.txt
docs/.Rhistory
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