https://github.com/cran/RcppArmadillo
Tip revision: d6c87fb42bd3a72905984475ccd845b3f35478e4 authored by Dirk Eddelbuettel on 03 March 2024, 07:22:41 UTC
version 0.12.8.1.0
version 0.12.8.1.0
Tip revision: d6c87fb
README.md
## RcppArmadillo: R and Armadillo via Rcpp
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### Synopsis
RcppArmadillo provides an interface from R to and from [Armadillo][armadillo] by utilising the [Rcpp
R/C++ interface library][rcpp].
### What is Armadillo?
[Armadillo][armadillo] is a high-quality linear algebra library for the C++ language, aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
[functionality](https://arma.sourceforge.net/docs.html) deliberately similar to Matlab (TM). See
[its website][armadillo] more information about Armadillo.
### So give me an example!
Glad you asked. Here is a light-weight and fast implementation of linear regression:
```c++
#include <RcppArmadillo/Lighter>
// [[Rcpp::depends(RcppArmadillo)]]
// [[Rcpp::export]]
Rcpp::List fastLm(const arma::mat& X, const arma::colvec& y) {
int n = X.n_rows, k = X.n_cols;
arma::colvec coef = arma::solve(X, y); // fit model y ~ X
arma::colvec res = y - X*coef; // residuals
double s2 = arma::dot(res, res) / (n - k); // std.errors of coefficients
arma::colvec std_err = arma::sqrt(s2 * arma::diagvec(arma::pinv(arma::trans(X)*X)));
return Rcpp::List::create(Rcpp::Named("coefficients") = coef,
Rcpp::Named("stderr") = std_err,
Rcpp::Named("df.residual") = n - k);
}
```
You can
[`Rcpp::sourceCpp()`](https://cran.r-project.org/package=Rcpp/vignettes/Rcpp-attributes.pdf)
the file above to compile the function. A version is also included in the
package [as the `fastLm()`](https://github.com/RcppCore/RcppArmadillo/blob/master/R/fastLm.R)
function.
The `RcppArmadillo/Lighter` header includes [Rcpp][rcpp] via its `Rcpp/Lighter` header which
precludes some more compile-time heavy features such as 'Rcpp Modules' which we may not need. See
the [Rcpp][rcpp] docs more details about 'Light', 'Lighter' and 'Lightest'. In the example above,
the switch saves about 15% of total compilation time.
### Status
The package is mature yet under active development with releases to [CRAN][cran] about once every
other month, and widely-used by other CRAN packages as can be seen from the [CRAN package page][cran
pkg]. As of February 2024, there are 1118 CRAN packages using RcppArmadillo.
### Documentation
The package contains a pdf vignette which is a pre-print of the
[paper by Eddelbuettel and Sanderson](http://dx.doi.org/10.1016/j.csda.2013.02.005)
in CSDA (2014), as well as an introductory vignette for the sparse
matrix conversions.
### Installation
RcppArmadillo is a [CRAN package][cran pkg], and lives otherwise in its own habitat on
[GitHub](https://github.com/RcppCore/RcppArmadillo) within the
[RcppCore](https://github.com/RcppCore) GitHub organization.
Run
```r
install.packages("RcppArmadillo")
```
to install from your nearest CRAN mirror.
### Authors
Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
### License
GPL (>= 2)
[armadillo]: https://arma.sourceforge.net
[rcpp]: https://www.rcpp.org
[cran]: https://cran.r-project.org
[cran pkg]: https://cran.r-project.org/package=RcppArmadillo