https://github.com/ANTsX/ANTsR
Raw File
Tip revision: 4eba13028cbe0df4a746d1eaefeb6caf8f1e84c6 authored by Nick Tustison on 13 June 2017, 16:31:23 UTC
ENH: Initial commit.
Tip revision: 4eba130
NAMESPACE
# Generated by roxygen2: do not edit by hand

export(.motion_correction)
export(abpBrainExtraction)
export(abpN4)
export(affineInitializer)
export(alffmap)
export(antsAverageImages)
export(antsBOLDNetworkAnalysis)
export(antsMotionCalculation)
export(antsMotionCorr)
export(antsSpatialICAfMRI)
export(antsrMotionCalculation)
export(antsrSurf)
export(antsrVol)
export(antsrimpute)
export(aslAveraging)
export(aslCensoring)
export(aslDenoiseR)
export(aslPerfusion)
export(basicInPaint)
export(bayesianCBF)
export(bayesianlm)
export(blockStimulus)
export(bloodPerfusionSVD)
export(clusterTimeSeries)
export(combineNuisancePredictors)
export(compcor)
export(composeTransformsToField)
export(computeDVARS)
export(computeDVARSspatialMap)
export(convolveImage)
export(corw)
export(createJacobianDeterminantImage)
export(createWarpedGrid)
export(crossvalidatedR2)
export(cvEigenanatomy)
export(deconvolutionSVD)
export(eanatDef)
export(eanatSelect)
export(eigSeg)
export(estSmooth)
export(euler)
export(exemplarInpainting)
export(fMRINormalization)
export(fastMarchingExtension)
export(filterfMRIforNetworkAnalysis)
export(frequencyFilterfMRI)
export(fsl2antsrTransform)
export(geoSeg)
export(getASLNoisePredictors)
export(getAverageOfTimeSeries)
export(getCenterOfMass)
export(getCentroids)
export(getMultiResFeatureMatrix)
export(getMultivariateTemplateCoordinates)
export(getTemplateCoordinates)
export(getfMRInuisanceVariables)
export(hemodynamicRF)
export(icawhiten)
export(image2ClusterImages)
export(imageDomainToSpatialMatrix)
export(imageListToMatrix)
export(imagesToMatrix)
export(initializeEigenanatomy)
export(interleaveMatrixWithItself)
export(invariantImageSimilarity)
export(joinEigenanatomy)
export(jointLabelFusion)
export(kellyKapowski)
export(knnSmoothingMatrix)
export(labelGeometryMeasures)
export(labelImageCentroids)
export(labels2matrix)
export(load.ANTsR)
export(lowrankRowMatrix)
export(make3ViewPNG)
export(makeGraph)
export(makePointsImage)
export(makePowersPointsImage)
export(maskImage)
export(matrix2timeseries)
export(matrixToImages)
export(measureImageSimilarity)
export(mergeListToNDImage)
export(mni2tal)
export(mrvnrfs)
export(mrvnrfs.predict)
export(multiLabelMorphology)
export(multiResRandomForestRegression)
export(multichannelPCA)
export(multichanneltovector)
export(multiscaleSVD)
export(networkEiganat)
export(pairwiseImageDistanceMatrix)
export(partialVolumeCorrection)
export(perfusionregression)
export(petSUVR)
export(plotBasicNetwork)
export(plotPrettyGraph)
export(preprocessRestingBOLD)
export(preprocessfMRI)
export(priorBasedSegmentation)
export(quantifyCBF)
export(quantifySNPs)
export(randcca)
export(randsvd)
export(randwhiten)
export(rapidlyInspectImageData)
export(readNormalizedPopulationData)
export(reflectImage)
export(regressProjections)
export(regressionNetworkViz)
export(reho)
export(renderImageLabels)
export(renderSurfaceFunction)
export(renormalizeProbabilityImages)
export(reorientImage)
export(resels)
export(rfSegmentation)
export(rfSegmentationPredict)
export(rftPval)
export(rftResults)
export(robustMatrixTransform)
export(rsfDenoise)
export(save.ANTsR)
export(segmentShapeFromImage)
export(segmentationRefinement.train)
export(skeletonize)
export(smoothMatrixPrediction)
export(sparseDecom)
export(sparseDecom2)
export(sparseDecom2boot)
export(sparseDecomboot)
export(sparseDistanceMatrix)
export(sparseDistanceMatrixXY)
export(sparseRegression)
export(spatialbayesianlm)
export(splitData)
export(splitMask)
export(splitNDImageToList)
export(statFieldThresh)
export(subgradientL1Regression)
export(subjectDataToGroupDataFrame)
export(taskFMRI)
export(temporalwhiten)
export(testEanat)
export(timeseries2matrix)
export(timeseriesN3)
export(timeserieswindow2matrix)
export(trapz)
export(vectortomultichannel)
export(vwnrfs)
export(vwnrfs.predict)
export(weingartenImageCurvature)
export(whiten)
export(writeNormalizedPopulationData)
importFrom(ANTsRCore,antsApplyTransforms)
importFrom(ANTsRCore,antsApplyTransformsToPoints)
importFrom(ANTsRCore,antsCopyImageInfo)
importFrom(ANTsRCore,antsGetDirection)
importFrom(ANTsRCore,antsGetOrigin)
importFrom(ANTsRCore,antsGetSpacing)
importFrom(ANTsRCore,antsImageClone)
importFrom(ANTsRCore,antsImageIterator)
importFrom(ANTsRCore,antsImageIteratorGet)
importFrom(ANTsRCore,antsImageIteratorGetIndex)
importFrom(ANTsRCore,antsImageIteratorIsAtEnd)
importFrom(ANTsRCore,antsImageIteratorNext)
importFrom(ANTsRCore,antsImageIteratorSet)
importFrom(ANTsRCore,antsImageRead)
importFrom(ANTsRCore,antsImageWrite)
importFrom(ANTsRCore,antsRegistration)
importFrom(ANTsRCore,antsSetDirection)
importFrom(ANTsRCore,antsSetOrigin)
importFrom(ANTsRCore,antsSetSpacing)
importFrom(ANTsRCore,antsTransformIndexToPhysicalPoint)
importFrom(ANTsRCore,antsTransformPhysicalPointToIndex)
importFrom(ANTsRCore,antsrGetPointerName)
importFrom(ANTsRCore,antsrTransformFromDisplacementField)
importFrom(ANTsRCore,applyAntsrTransform)
importFrom(ANTsRCore,applyAntsrTransformToImage)
importFrom(ANTsRCore,as.antsImage)
importFrom(ANTsRCore,atropos)
importFrom(ANTsRCore,bigLMStats)
importFrom(ANTsRCore,composeAntsrTransforms)
importFrom(ANTsRCore,cropImage)
importFrom(ANTsRCore,cropIndices)
importFrom(ANTsRCore,getANTsRData)
importFrom(ANTsRCore,getAntsrTransformParameters)
importFrom(ANTsRCore,getMask)
importFrom(ANTsRCore,getNeighborhoodAtVoxel)
importFrom(ANTsRCore,getNeighborhoodInMask)
importFrom(ANTsRCore,iMath)
importFrom(ANTsRCore,is.antsImage)
importFrom(ANTsRCore,kmeansSegmentation)
importFrom(ANTsRCore,labelClusters)
importFrom(ANTsRCore,labelStats)
importFrom(ANTsRCore,lappend)
importFrom(ANTsRCore,makeImage)
importFrom(ANTsRCore,mergeChannels)
importFrom(ANTsRCore,n3BiasFieldCorrection)
importFrom(ANTsRCore,n4BiasFieldCorrection)
importFrom(ANTsRCore,readAntsrTransform)
importFrom(ANTsRCore,resampleImage)
importFrom(ANTsRCore,resampleImageToTarget)
importFrom(ANTsRCore,smoothImage)
importFrom(ANTsRCore,splitChannels)
importFrom(ANTsRCore,thresholdImage)
importFrom(ANTsRCore,usePkg)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,heat.colors)
importFrom(grDevices,hsv)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,hist)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(magic,ashift)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,new)
importFrom(psych,winsor)
importFrom(rsvd,rsvd)
importFrom(stats,ar)
importFrom(stats,as.formula)
importFrom(stats,coefficients)
importFrom(stats,convolve)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,lm.fit)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,optimize)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,pnorm)
importFrom(stats,ppois)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qchisq)
importFrom(stats,qf)
importFrom(stats,qnorm)
importFrom(stats,qt)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,spec.pgram)
importFrom(stats,spline)
importFrom(stats,stl)
importFrom(stats,t.test)
importFrom(stats,toeplitz)
importFrom(stats,ts)
importFrom(stats,var)
importFrom(utils,data)
importFrom(utils,glob2rx)
importFrom(utils,read.csv)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
useDynLib(ANTsR)
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