https://github.com/GPflow/GPflow
Tip revision: 1156bc1e27768cd878835f4c91df17d8c784adcb authored by alexggmatthews on 13 September 2016, 13:03:29 UTC
Readding mnist demo.
Readding mnist demo.
Tip revision: 1156bc1
test_data_object.py
from __future__ import print_function
import GPflow
from GPflow.settings import np_float_type
import numpy as np
import unittest
import tensorflow as tf
class TestDataHolderSimple(unittest.TestCase):
def setUp(self):
self.m = GPflow.model.Model()
self.m.X = GPflow.param.DataHolder(np.random.randn(2, 2).astype(np_float_type), on_shape_change='pass')
self.m.Y = GPflow.param.DataHolder(np.random.randn(2, 2).astype(np_float_type), on_shape_change='raise')
self.m.Z = GPflow.param.DataHolder(np.random.randn(2, 2).astype(np_float_type), on_shape_change='recompile')
self.m._needs_recompile = False
def test_same_shape(self):
new_X = np.random.randn(2, 2).astype(np_float_type)
self.m.X = new_X
assert np.all(self.m.get_feed_dict()[self.m.X._tf_array] == new_X)
self.assertFalse(self.m._needs_recompile)
new_Y = np.random.randn(2, 2).astype(np_float_type)
self.m.Y = new_Y
assert np.all(self.m.get_feed_dict()[self.m.Y._tf_array] == new_Y)
self.assertFalse(self.m._needs_recompile)
new_Z = np.random.randn(2, 2).astype(np_float_type)
self.m.Z = new_Z
assert np.all(self.m.get_feed_dict()[self.m.Z._tf_array] == new_Z)
self.assertFalse(self.m._needs_recompile)
def test_pass(self):
self.m.X = np.random.randn(3, 3).astype(np_float_type)
self.assertFalse(self.m._needs_recompile)
def test_raise(self):
with self.assertRaises(ValueError):
self.m.Y = np.random.randn(3, 3).astype(np_float_type)
def test_recompile(self):
self.m.Z = np.random.randn(3, 3).astype(np_float_type)
self.assertTrue(self.m._needs_recompile)
class TestDataHolderModels(unittest.TestCase):
"""
We make test for Dataholder that enables to reuse model for different data
with the same shape to the original. We tested this for the six models.
"""
def setUp(self):
tf.reset_default_graph()
self.rng = np.random.RandomState(0)
self.X = self.rng.rand(20, 1).astype(np_float_type)*10
self.Y = np.sin(self.X) + 0.9 * np.cos(self.X*1.6) + self.rng.randn(*self.X.shape) * 0.8
self.kern = GPflow.kernels.Matern32(1)
def test_gpr(self):
m = GPflow.gpr.GPR(self.X, self.Y, self.kern)
m._compile()
m.X = np.random.randn(*self.X.shape).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should be avoided for the same shape data")
m.X = np.random.randn(30, 1).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="For GPR, recompilation should be avoided for the same shape data")
def test_sgpr(self):
m = GPflow.sgpr.SGPR(self.X, self.Y, self.kern, Z=self.X[::2])
m._compile()
m.X = np.random.randn(*self.X.shape).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should be avoided for the same shape data")
m.X = np.random.randn(30, 1).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="For SGPR, recompilation should be avoided for the same shape data")
def test_gpmc(self):
m = GPflow.gpmc.GPMC(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT())
m._compile()
m.X = np.random.randn(*self.X.shape).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should be avoided for the same shape data")
Xnew = np.random.randn(30, 1).astype(np_float_type)
Ynew = np.sin(Xnew) + 0.9 * np.cos(Xnew*1.6) + self.rng.randn(*Xnew.shape).astype(np_float_type) * 0.8
m.X = Xnew
m.Y = Ynew
self.assertTrue(m._needs_recompile,
msg="Recompilation should be necessary for different shape data")
m._compile() # make sure compilation is okay for new shapes.
def test_sgpmc(self):
m = GPflow.sgpmc.SGPMC(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT(), Z=self.X[::2])
m._compile()
m.X = np.random.randn(*self.X.shape).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should be avoided for the same shape data")
m.X = np.random.randn(30, 1).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should not be necessary for different shape data")
def test_svgp(self):
m = GPflow.svgp.SVGP(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT(), Z=self.X[::2])
m._compile()
m.X = np.random.randn(*self.X.shape).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should be avoided for the same shape data")
m.X = np.random.randn(30, 1).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="For SVGP, recompilation should be avoided for new shape data")
def test_vgp(self):
m = GPflow.vgp.VGP(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT())
m._compile()
m.X = np.random.randn(*self.X.shape).astype(np_float_type)
self.assertFalse(m._needs_recompile,
msg="Recompilation should be avoided for the same shape data")
Xnew = np.random.randn(30, 1).astype(np_float_type)
Ynew = np.sin(Xnew) + 0.9 * np.cos(Xnew*1.6) + self.rng.randn(*Xnew.shape).astype(np_float_type) * 0.8
m.X = Xnew
m.Y = Ynew
self.assertTrue(m._needs_recompile,
msg="Recompilation should be necessary for different shape data")
m._compile() # make sure compilation is okay for new shapes.
if __name__ == '__main__':
unittest.main()