https://github.com/hms-dbmi/higlass
Tip revision: cc0ca3c4f25446bc58f42d978c545fad246ed74d authored by Peter Kerpedjiev on 08 February 2019, 03:24:50 UTC
Add descriptions and delete annotations
Add descriptions and delete annotations
Tip revision: cc0ca3c
view-configs.js
export const emptyConf = {
editable: true,
zoomFixed: false,
trackSourceServers: [],
exportViewUrl: '',
views: [
{
uid: 'aa',
initialXDomain: [0, 100],
autocompleteSource: '',
genomePositionSearchBox: {},
chromInfoPath: '',
tracks: {
top: [],
left: [],
center: [],
right: [],
bottom: [],
whole: [],
gallery: []
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
moved: false,
static: false
},
genomePositionSearchBoxVisible: true
}
],
};
export const osmConf = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: '/api/v1/viewconfs',
views: [
{
uid: 'aa',
initialXDomain: [
936467263.9009547,
937119339.4135379
],
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA',
chromInfoServer: 'http://higlass.io/api/v1',
chromInfoId: 'hg19',
visible: false
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [{
type: 'top-axis',
}],
left: [{
type: 'left-axis',
}
],
center: [
{
type: 'osm-tiles',
options: {
maxPos: 3096000000,
minPos: 0,
maxZoom: 19,
labelPosition: 'hidden'
},
position: 'center',
uid: 'M6CV28O9Tq2H7U2w1yvorw',
name: 'OSM Tiles',
width: 1677,
height: 932
}
],
right: [],
bottom: [],
whole: [],
gallery: []
},
layout: {
w: 6,
h: 25,
x: 0,
y: 0,
i: 'Hg2oHLKOSlmros3FKxWDRg',
moved: false,
static: false
},
initialYDomain: [
1144694580.1977904,
1146047244.4996018
],
genomePositionSearchBoxVisible: true
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const geneAnnotationsOnly1 = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
2506844966.0043917,
2509052369.327333
],
initialYDomain: [
2507686542.0666137,
2510171986.3338466
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: false,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
name: 'Gene Annotations (hg19)',
server: 'http://higlass.io/api/v1',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
uid: 'genes1',
type: 'horizontal-gene-annotations',
options: {
labelPosition: 'outerTop',
name: 'Gene Annotations (hg19)',
labelColor: 'black',
plusStrandColor: 'blue',
minusStrandColor: 'red',
trackBorderWidth: 0,
trackBorderColor: 'black',
showMousePosition: false,
mousePositionColor: '#999999',
fontSize: 11,
geneAnnotationHeight: 10,
geneLabelPosition: 'outside',
geneStrandSpacing: 4
},
width: 913,
height: 60,
position: 'top',
header: ''
}
],
left: [],
center: [],
right: [],
bottom: [],
whole: [],
gallery: []
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
},
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
chromInfoServer: 'http://higlass.io/api/v1',
visible: true,
chromInfoId: 'hg19',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA'
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const geneAnnotationsOnly = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'/api/v1',
'http://higlass.io/api/v1'
],
exportViewUrl: '/api/v1/viewconfs/',
views: [
{
tracks: {
top: [
{
type: 'combined',
uid: 'BZBnN-PIRs-53cXgme7o_w',
height: 30,
width: 1173,
contents: [
{
name: 'ChromosomeAxis',
created: '2017-07-17T14:16:45.346835Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'NyITQvZsS_mOFNlz5C2LJg',
uid: 'YbYGI4JMSv-gkTPzL01pXQ',
type: 'horizontal-chromosome-labels',
options: {
showMousePosition: false,
mousePositionColor: '#999999',
color: '#777777',
stroke: '#FFFFFF',
fontSize: 12,
fontIsAligned: false
},
width: 1173,
height: 30,
position: 'top'
},
{
uid: 'MfwUm8OwSreXJqo31kralg',
type: 'viewport-projection-horizontal',
fromViewUid: 'XWA2wY2sSyShybSVbuARfA',
options: {
projectionFillColor: '#777',
projectionStrokeColor: '#777',
projectionFillOpacity: 0.3,
projectionStrokeOpacity: 0.7,
strokeWidth: 1
},
name: 'ViewportProjection',
position: 'top',
width: 1173,
height: 30
}
],
position: 'top',
options: {}
},
{
type: 'combined',
uid: 'G0zF1N_5QHmgD4MMduoYFQ',
height: 55,
width: 1173,
contents: [
{
name: 'Gene Annotations (hg38)',
created: '2017-07-14T15:27:46.989053Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'P0PLbQMwTYGy-5uPIQid7A',
uid: 'genes1',
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black',
labelPosition: 'hidden',
plusStrandColor: 'blue',
minusStrandColor: 'red',
trackBorderWidth: 0,
trackBorderColor: 'black',
showMousePosition: false,
mousePositionColor: '#999999',
name: 'GeneAnnotations(hg38)'
},
width: 1173,
height: 55,
header: '1\t2\t3\t4\t5\t6\t7\t8\t9\t10\t11\t12\t13\t14',
position: 'top'
},
{
uid: 'EhOdm65ATsuoyA2PP_CWXw',
type: 'viewport-projection-horizontal',
fromViewUid: 'XWA2wY2sSyShybSVbuARfA',
options: {
projectionFillColor: '#777',
projectionStrokeColor: '#777',
projectionFillOpacity: 0.3,
projectionStrokeOpacity: 0.7,
strokeWidth: 1
},
name: 'ViewportProjection',
position: 'top',
width: 1173,
height: 55
}
],
position: 'top',
options: {}
}
],
left: [],
center: [],
right: [],
bottom: [],
whole: [],
gallery: []
},
initialXDomain: [
1813877344.9998484,
1813954614.937772
],
initialYDomain: [
1813915981.414309,
1813960512.0861218
],
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'QpgOD8vCSO2AHp5YMQ93mQ',
moved: false,
static: false
},
uid: 'aa'
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const annotationsTilesView = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1166875793.4763377,
1181745537.0266984
],
initialYDomain: [
1167098454.4841504,
1181802055.6484737
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: false,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
name: 'Gene Annotations (hg19)',
created: '2017-02-05T19:31:52.412319Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
uid: 'track1',
type: 'horizontal-1d-tiles',
options: {
name: 'Gene Annotations (hg19)'
},
width: 20,
height: 20,
header: '',
position: 'top'
}
],
left: [],
center: [],
right: [],
bottom: [],
whole: [],
gallery: []
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
},
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
chromInfoServer: 'http://higlass.io/api/v1',
visible: true,
chromInfoId: 'hg19',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA'
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const horizontalAndVerticalMultivec = {
editable: true,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://localhost:8000/api/v1/viewconfs',
views: [
{
uid: 'a',
initialXDomain: [
2285823068.9459743,
3049412580.354434
],
tracks: {
top: [
{
name: 'GM12878-E116-DNase.fc.signal',
created: '2017-05-03T13:35:08.187475Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'WEPeAAfSTUOUDWFGNBfPEQ',
uid: 'RGinKJsyTyyTqNk3fAgOog',
type: 'horizontal-vector-heatmap',
options: {
labelColor: 'black',
labelPosition: 'topLeft',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
lineStrokeWidth: 1,
valueScaling: 'linear',
trackBorderWidth: 0,
trackBorderColor: 'black',
labelTextOpacity: 0.4,
showMousePosition: false,
mousePositionColor: '#999999',
showTooltip: false,
name: 'GM12878-E116-DNase.fc.signal',
heatmapValueScaling: 'log'
},
width: 425,
height: 100,
position: 'top'
}
],
left: [
{
name: 'GM12878-E116-DNase.fc.signal',
created: '2017-05-03T13:35:08.187475Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'WEPeAAfSTUOUDWFGNBfPEQ',
uid: 'RotnGXd3TRyj1wjbybInew',
type: 'vertical-line',
options: {
labelPosition: 'topLeft',
labelColor: 'black',
labelTextOpacity: 0.4,
valueScaling: 'linear',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
name: 'GM12878-E116-DNase.fc.signal',
axisPositionVertical: 'top',
lineStrokeWidth: 1,
lineStrokeColor: 'blue',
showMousePosition: false,
showTooltip: false,
mousePositionColor: '#999999'
},
width: 100,
height: 914,
position: 'left'
},
{
name: 'GM12878-E116-DNase.fc.signal',
created: '2017-05-03T13:35:08.187475Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'WEPeAAfSTUOUDWFGNBfPEQ',
uid: 'Npe1qulkQGWVaLqRk_Oj0Q',
type: 'vertical-vector-heatmap',
options: {
labelPosition: 'topLeft',
labelColor: 'black',
labelTextOpacity: 0.4,
valueScaling: 'linear',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
name: 'GM12878-E116-DNase.fc.signal'
},
width: 118,
height: 914,
position: 'left'
}
],
center: [],
bottom: [],
right: [],
whole: [],
gallery: []
},
layout: {
w: 12,
h: 6,
x: 0,
y: 0,
i: 'a',
moved: false,
static: false
},
initialYDomain: [
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],
genomePositionSearchBoxVisible: true,
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
chromInfoServer: 'http://higlass.io/api/v1',
visible: true,
chromInfoId: 'hg19',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA'
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const divergentTrackConfig = {
zoomFixed: false,
views: [
{
layout: {
w: 12,
h: 3,
x: 0,
y: 0,
i: 'eJLMGjH7Qm-zm_F_hqjXkw',
moved: false,
static: false
},
uid: 'aa',
initialYDomain: [
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],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
initialXDomain: [
315288478.9357108,
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],
tracks: {
left: [],
top: [
{
name: 'Schwarzer et al (2017) TAM Eigenvectors 20K',
created: '2017-08-01T18:26:26.907896Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'ZsjN4ZkJSu6PASiw_kVIrw',
uid: 't1',
type: 'horizontal-bar',
options: {
labelColor: 'blue',
labelPosition: 'bottomLeft',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
lineStrokeWidth: 1,
valueScaling: 'linear',
trackBorderWidth: 0,
trackBorderColor: 'black',
labelTextOpacity: 0.4,
name: 'Schwarzer et al (2017) TAM Eigenvectors 20K',
barFillColor: 'darkgreen',
barOpacity: 1
},
position: 'top',
width: 844,
height: 73
},
{
type: 'combined',
uid: 'P09yHHiYTkitbhz_tc2p-g',
height: 73,
width: 844,
contents: [
{
name: 'Schwarzer et al (2017) TAM Eigenvectors 20K',
created: '2017-08-01T18:26:26.907896Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'ZsjN4ZkJSu6PASiw_kVIrw',
uid: 'T49eQBUaTuuk_B_eiISbbA',
type: 'horizontal-divergent-bar',
options: {
labelColor: 'blue',
labelPosition: 'bottomLeft',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
lineStrokeWidth: 1,
valueScaling: 'linear',
trackBorderWidth: 0,
trackBorderColor: 'black',
labelTextOpacity: 0.4,
name: 'Schwarzer et al (2017) TAM Eigenvectors 20K',
barFillColor: 'darkgreen',
barOpacity: 1
},
position: 'top',
width: 844,
height: 73
}
],
position: 'top',
options: {}
}
],
right: [],
center: [],
bottom: []
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/mm9/chromSizes.tsv',
genomePositionSearchBoxVisible: true,
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
chromInfoServer: 'http://higlass.io/api/v1',
visible: true,
chromInfoId: 'mm9',
autocompleteId: 'GUm5aBiLRCyz2PsBea7Yzg'
}
}
],
editable: true,
exportViewUrl: 'http://higlass.io/api/v1/viewconfs',
zoomLocks: {
locksByViewUid: {
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locksDict: {
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uid: 'J2fJb-tpQk20O8-5Oi5Kpw'
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}
},
trackSourceServers: [
'http://higlass.io/api/v1'
],
locationLocks: {
locksByViewUid: {
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locksDict: {
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valueScaleLocks: {
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export const exportDataConfig = {
editable: true,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://localhost:8000/api/v1/viewconfs',
views: [
{
uid: 'a',
initialXDomain: [
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],
tracks: {
top: [],
left: [],
center: [
{
uid: 'VhBCKw3fQmii0NBqL05juQ',
type: 'combined',
contents: [
{
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
created: '2017-02-03T00:28:06.909619Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
uid: 'B1Ke1ViASOWGbiPgob2eFg',
type: '2d-tiles',
options: {
backgroundColor: '#eeeeee',
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarPosition: 'topRight',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
showMousePosition: false,
mousePositionColor: '#999999',
showTooltip: false,
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000'
},
width: 1052,
height: 1060,
transforms: [
{
name: 'ICE',
value: 'weight'
}
],
position: 'center'
}
],
position: 'center',
width: 1052,
height: 1060,
options: {}
}
],
bottom: [],
right: [],
whole: [],
gallery: []
},
layout: {
w: 6,
h: 6,
x: 0,
y: 0,
i: 'a',
moved: false,
static: false
},
initialYDomain: [
-542724630.897934,
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],
genomePositionSearchBoxVisible: true,
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
chromInfoServer: 'http://higlass.io/api/v1',
visible: true,
chromInfoId: 'hg19',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA'
}
},
{
uid: 'NagBzk-AQZuoY0bqG-Yy0Q',
initialXDomain: [
480652506.7429197,
1436917478.5450268
],
tracks: {
top: [],
left: [],
center: [
{
uid: 'VhBCKw3fQmii0NBqL05juQ',
type: 'combined',
contents: [
{
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
created: '2017-02-03T00:28:06.909619Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
uid: 'PdEzdgsxRymGelD5xfKlNA',
type: 'heatmap',
options: {
backgroundColor: '#eeeeee',
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarPosition: 'topRight',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
showMousePosition: false,
mousePositionColor: '#999999',
showTooltip: true,
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000'
},
width: 1052,
height: 1060,
transforms: [
{
name: 'ICE',
value: 'weight'
}
],
position: 'center'
}
],
position: 'center',
width: 1052,
height: 1060,
options: {}
}
],
bottom: [],
right: [],
whole: [],
gallery: []
},
layout: {
w: 6,
h: 6,
x: 6,
y: 0,
i: 'NagBzk-AQZuoY0bqG-Yy0Q',
moved: false,
static: false
},
initialYDomain: [
-542724630.8984827,
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],
genomePositionSearchBoxVisible: true,
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
chromInfoServer: 'http://higlass.io/api/v1',
visible: true,
chromInfoId: 'hg19',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA'
}
}
],
zoomLocks: {
locksByViewUid: {
'NagBzk-AQZuoY0bqG-Yy0Q': 'WpVjxSObQpi656X3gAqkpA',
a: 'WpVjxSObQpi656X3gAqkpA'
},
locksDict: {
WpVjxSObQpi656X3gAqkpA: {
'NagBzk-AQZuoY0bqG-Yy0Q': [
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],
a: [
921740661.5004478,
2685902060.244133,
436164.72082698345
],
uid: 'WpVjxSObQpi656X3gAqkpA'
}
}
},
locationLocks: {
locksByViewUid: {
'NagBzk-AQZuoY0bqG-Yy0Q': 'H4m1eXywQH2ZUOKwqdKl1g',
a: 'H4m1eXywQH2ZUOKwqdKl1g'
},
locksDict: {
H4m1eXywQH2ZUOKwqdKl1g: {
'NagBzk-AQZuoY0bqG-Yy0Q': [
921740661.5004476,
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],
a: [
921740661.5004478,
2685902060.244133,
436164.72082698345
],
uid: 'H4m1eXywQH2ZUOKwqdKl1g'
}
}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const divisionViewConfig = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://localhost:8000/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
-128227010.6076158,
3227095876.810823
],
initialYDomain: [
-679063376.6830564,
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],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: false,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
type: 'horizontal-chromosome-labels',
position: 'top',
name: 'Chromosome Labels (hg19)',
height: 30,
uid: 'I1QUF22JQJuJ38j9PS4iqw',
options: {},
width: 667
}
],
left: [
{
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
type: 'vertical-chromosome-labels',
position: 'left',
name: 'Chromosome Labels (hg19)',
width: 30,
uid: 'a-mFiHnBQ8uuI6UG3USWVA',
options: {},
height: 828
}
],
center: [
{
uid: 'c1',
type: 'combined',
height: 828,
contents: [
{
data: {
type: 'divided',
children: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
},
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'ZCvntCKST0KUvQPGcCbJGA',
}
]
},
type: 'heatmap',
position: 'center',
options: {
colorRange: [
'#FFFFFF',
'#F8E71C',
'#F5A623',
'#D0021B'
],
colorbarPosition: 'topRight',
colorbarLabelsPosition: 'outside',
maxZoom: null,
labelPosition: 'bottomLeft',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000'
},
uid: 'heatmap1',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
transforms: [
{
name: 'ICE',
value: 'weight'
}
],
width: 667,
height: 828
},
{
type: '2d-chromosome-grid',
local: true,
orientation: '2d',
name: 'Chromosome Grid (hg19)',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
thumbnail: null,
uid: 'LUVqXXu2QYiO8XURIwyUyA',
options: {
lineStrokeWidth: 1,
lineStrokeColor: 'grey'
},
position: 'center',
width: 667,
height: 828
}
],
position: 'center',
options: {},
width: 667
}
],
right: [],
bottom: []
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const simpleCenterViewConfig = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'],
views: [
{
uid: 'a',
initialXDomain: [
1480820463.833503,
2550144059.1286707
],
initialYDomain: [
1569819845.1080737,
2433776657.2008576
],
tracks: {
top: [
{
type: 'top-axis',
local: true,
orientation: '1d-horizontal',
name: 'Top Axis',
thumbnail: {},
defaultOptions: {},
uid: 'd8focpO5TKKd2TB8QONd9w',
options: {},
width: 20,
height: 20,
position: 'top'
}
],
left: [
{
type: 'left-axis',
local: true,
orientation: '1d-vertical',
name: 'Left Axis',
thumbnail: {},
minWidth: 100,
uid: 'RhdSji35SgOOJyqcy81zcg',
options: {},
width: 100,
height: 400,
position: 'left'
}
],
center: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
position: 'center',
options: {
colorRange: [
'#FFFFFF',
'#F8E71C',
'#F5A623',
'#D0021B'
],
colorbarPosition: 'topRight',
colorbarLabelsPosition: 'outside',
maxZoom: null,
labelPosition: 'bottomLeft',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000'
},
uid: 'heatmap1',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
transforms: [
{
name: 'ICE',
value: 'weight'
}
],
width: 670,
height: 400
}
],
bottom: [],
right: []
},
layout: {
w: 11,
h: 14,
x: 0,
y: 0,
i: 'a',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
},
valueScaleLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const simple1And2dAnnotations = {
editable: true,
zoomFixed: false,
trackSourceServers: ['http://higlass.io/api/v1'],
views: [
{
uid: 'a',
initialXDomain: [1000000, 2000000],
initialYDomain: [1000000, 2000000],
tracks: {
top: [
{
uid: 'b',
type: 'horizontal-1d-annotations',
height: 100,
options: {
regions: [
[1000000, 2000000],
],
}
}
],
left: [],
center: [
{
type: 'combined',
height: 200,
contents: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
uid: 'heatmap1',
type: 'heatmap',
},
{
type: '2d-chromosome-annotations',
uid: '2d-chromosome-annotations',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
options: {
minRectWidth: 6,
minRectHeight: 6,
regions: [
[
'chr1', 1000000, 2000000,
'chr1', 1000000, 2000000,
'rgba(255, 0, 0, 0.33)', 'rgba(255, 0, 0, 0.66)'
]
]
}
}
]
}
],
bottom: [],
right: []
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'a',
moved: false,
static: false
}
}
],
};
export const rectangleDomains = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1',
'http://localhost:8989/api/v1'
],
exportViewUrl: 'http://localhost:8000/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
0,
3000000000
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [],
left: [],
center: [
{
uid: 'c1',
type: 'combined',
height: 1088,
contents: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
position: 'center',
options: {
colorRange: [
'#FFFFFF',
'#F8E71C',
'#F5A623',
'#D0021B'
],
colorbarPosition: 'topRight',
colorbarLabelsPosition: 'outside',
maxZoom: null,
labelPosition: 'bottomLeft',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
trackBorderWidth: 0,
trackBorderColor: 'black',
heatmapValueScaling: 'log',
scaleStartPercent: '0.00000',
scaleEndPercent: '1.00000'
},
uid: 'heatmap1',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
transforms: [
{
name: 'ICE',
value: 'weight'
}
],
width: 961,
height: 1088
},
{
type: '2d-chromosome-grid',
local: true,
orientation: '2d',
name: 'Chromosome Grid (hg19)',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
thumbnail: null,
uid: 'LUVqXXu2QYiO8XURIwyUyA',
options: {
lineStrokeWidth: 1,
lineStrokeColor: 'grey'
},
position: 'center',
width: 961,
height: 1088
},
{
name: 'Forcato et al (2017) Rao_RepH_GM12878_InsulationScore.txt.multires.db',
created: '2017-07-14T00:05:54.357409Z',
server: 'http://higlass.io/api/v1',
tilesetUid: 'WleVFSK7RIWx2EeptrbPBA',
uid: 'rectangles1',
type: '2d-rectangle-domains',
options: {
labelColor: 'black',
labelPosition: 'hidden',
trackBorderWidth: 0,
trackBorderColor: 'black',
rectangleDomainFillColor: 'grey',
rectangleDomainStrokeColor: 'black',
rectangleDomainOpacity: 0.6,
name: 'Forcato et al (2017) Rao_RepH_GM12878_InsulationScore.txt.multires.db'
},
width: 20,
height: 20,
position: 'center'
}
],
position: 'center',
options: {},
width: 961
}
],
right: [],
bottom: []
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const invalidTrackConfig = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1',
'http://127.0.0.1:8989/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1796142508.3343146,
1802874737.269993
],
initialYDomain: [
1795888772.6557815,
1806579890.9341388
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'garble-invalid-track-garble',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'line1'
}
],
left: [
],
center: [
],
right: [],
bottom: []
},
layout: {
w: 5,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
},
locationLocks: {
}
};
export const oneTrackConfig = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1',
'http://127.0.0.1:8989/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1796142508.3343146,
1802874737.269993
],
initialYDomain: [
1795888772.6557815,
1806579890.9341388
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'horizontal-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'line1'
}
],
left: [
],
center: [
],
right: [],
bottom: []
},
layout: {
w: 5,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {
view2: 'JAFSZPdmSWe72WgTnVDtbA',
aa: 'JAFSZPdmSWe72WgTnVDtbA'
},
locksDict: {
JAFSZPdmSWe72WgTnVDtbA: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
},
locationLocks: {
locksByViewUid: {
view2: 'fRq4SRH8TSyVveKqebWsxw',
aa: 'fRq4SRH8TSyVveKqebWsxw'
},
locksDict: {
fRq4SRH8TSyVveKqebWsxw: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
}
};
export const chromosomeGridTrack = {
type: '2d-chromosome-grid',
local: true,
orientation: '2d',
name: 'Chromosome Grid (hg19)',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
thumbnail: null,
uid: 'LUVqXXu2QYiO8XURIwyUyA',
options: {
gridStrokeWidth: 1,
gridStrokeColor: 'grey',
lineStrokeWidth: 1,
lineStrokeColor: 'grey'
},
position: 'center'
};
export const oneZoomedOutViewConf = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1334468431.4636846,
2088815290.9593406
],
initialYDomain: [
1620859687.0934794,
1978456641.24886
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'horizontal-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log',
lineStrokeWidth: 1,
trackBorderWidth: 0,
trackBorderColor: 'black'
},
width: 20,
height: 20,
position: 'top',
uid: 'line1'
}
],
left: [
{
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'vertical-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log',
axisPositionVertical: 'top',
lineStrokeWidth: 1,
trackBorderWidth: 0,
trackBorderColor: 'black'
},
width: 20,
height: 20,
position: 'left',
uid: 'vline1'
}
],
center: [
{
uid: 'c1',
type: 'combined',
height: 200,
contents: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
position: 'center',
options: {
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
colorbarPosition: 'topLeft',
colorbarOrientation: 'vertical',
colorbarLabelsPosition: 'outside',
maxZoom: null,
labelPosition: 'bottomRight',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
trackBorderWidth: 0,
trackBorderColor: 'black'
},
uid: 'heatmap1',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
}
],
position: 'center',
options: {}
}
],
right: [],
bottom: []
},
layout: {
w: 5,
h: 5,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {
view2: 'O8FOHoclT0KEYhoJybXouA',
aa: 'O8FOHoclT0KEYhoJybXouA'
},
locksDict: {
O8FOHoclT0KEYhoJybXouA: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
},
locationLocks: {
locksByViewUid: {
view2: 'BnrnwLnJRNm_Zlkk9ggZew',
aa: 'BnrnwLnJRNm_Zlkk9ggZew'
},
locksDict: {
BnrnwLnJRNm_Zlkk9ggZew: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
}
};
export const threeViews = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1',
'http://localhost:8989/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
44224199.75714093,
3139918182.757144
],
initialYDomain: [
437819577.5957135,
2534046646.0842867
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [],
left: [],
center: [
{
uid: 'XTlN5MnEQXKaDbeQISTU2Q',
type: 'combined',
contents: [
{
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
uid: 'ZTDBLcN1SNyDty0iVx1PWA',
type: 'heatmap',
options: {
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'inside',
colorbarPosition: 'topRight',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
},
width: 100,
height: 100,
position: 'center'
}
],
position: 'center'
}
],
right: [],
bottom: []
},
layout: {
w: 4,
h: 7,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
},
{
uid: 'bb',
initialXDomain: [
44224199.75714047,
3139918182.7571454
],
initialYDomain: [
437819577.5957127,
2534046646.084288
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [],
left: [],
center: [
{
uid: 'YUrwxBy9QRiol-tgnJR8Zw',
type: 'combined',
contents: [
{
name: 'Dixon et al. (2012) IMR90 HindIII (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'AddRuJRtSTqjI9NUwV49XA',
uid: 'HDLU6ymrRlCgbe6cTwoRhw',
type: 'heatmap',
options: {
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'inside',
colorbarPosition: 'topRight',
name: 'Dixon et al. (2012) IMR90 HindIII (allreps) 1kb'
},
width: 100,
height: 100,
position: 'center'
}
],
position: 'center'
}
],
right: [],
bottom: []
},
layout: {
w: 4,
h: 7,
x: 4,
y: 0,
i: 'MGOAVH4ASU6NiVdSKCSFMA',
moved: false,
static: false
}
},
{
uid: 'cc',
initialXDomain: [
-70758719.61143267,
3024935263.388575
],
initialYDomain: [
92870819.4899962,
2189097887.978573
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [],
left: [],
center: [
{
uid: 'KYcXdKX1QMKlOLI616NLwQ',
type: 'combined',
contents: [
{
name: 'Selvaraj et al. (2013) GM12878 HindIII (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'GSKqGQDlQqaHmWIqkgi_4w',
uid: 'bBTem1BHTpGULKrStysrPw',
type: 'heatmap',
options: {
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'inside',
colorbarPosition: 'topRight',
name: 'Selvaraj et al. (2013) GM12878 HindIII (allreps) 1kb'
},
width: 100,
height: 100,
position: 'center'
}
],
position: 'center'
}
],
right: [],
bottom: []
},
layout: {
w: 4,
h: 7,
x: 0,
y: 7,
i: 'DHPiKLAyS-2zyxM3IknNAg',
moved: false,
static: false
}
}
],
zoomLocks: {},
locationLocks: {}
};
export const fritzBug2 = {
editable: false,
trackSourceServers: [
'/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19&type=json&cum=1',
views: [
{
uid: 'a_',
zoomFixed: true,
initialXDomain: [
2829728720,
2881033286
],
initialYDomain: [
2829728720,
2881033286
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: false,
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
tracks: {
top: [
{
uid: 'b',
type: 'horizontal-gene-annotations',
height: 60,
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
server: 'http://higlass.io/api/v1',
name: 'Gene Annotations',
options: {
name: 'Gene Annotations (hg19)',
minusStrandColor: '#999',
plusStrandColor: '#999'
}
},
{
uid: 'c',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
type: 'horizontal-chromosome-labels',
name: 'Chromosome Labels (hg19)',
height: 30
}
],
left: [
{
uid: 'd',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
type: 'vertical-chromosome-labels',
name: 'Chromosome Labels (hg19)',
width: 30
}
],
center: [
{
uid: 'e',
type: 'combined',
height: 200,
contents: [
{
uid: 'f',
server: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1',
tilesetUid: 'rao-gm12878-1kbmr',
type: 'heatmap',
options: {
colorRange: [
'#fff',
'#bbb',
'#777',
'#222'
],
maxZoom: null,
name: '',
orgName: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
}
}
],
position: 'center'
},
{
uid: 'a.2d',
type: '2d-chromosome-annotations',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
options: {
minRectWidth: 6,
minRectHeight: 6,
regions: [
[
'chr22',
17535000,
17540000,
'chr22',
17395000,
17400000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
17980000,
17990000,
'chr22',
17400000,
17410000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
17980000,
17985000,
'chr22',
17650000,
17655000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
18250000,
18260000,
'chr22',
17690000,
17700000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
18550000,
18555000,
'chr22',
18310000,
18315000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
18625000,
18630000,
'chr22',
18590000,
18595000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
20260000,
20270000,
'chr22',
18940000,
18950000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
19460000,
19465000,
'chr22',
19160000,
19165000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
19900000,
19905000,
'chr22',
19720000,
19725000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
20270000,
20275000,
'chr22',
20145000,
20150000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
20810000,
20815000,
'chr22',
20765000,
20770000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
21050000,
21060000,
'chr22',
20770000,
20780000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
21050000,
21060000,
'chr22',
20940000,
20950000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
21040000,
21045000,
'chr22',
20960000,
20965000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
22295000,
22300000,
'chr22',
22060000,
22065000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23250000,
23255000,
'chr22',
22380000,
22385000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23280000,
23290000,
'chr22',
22380000,
22390000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23480000,
23485000,
'chr22',
22520000,
22525000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23245000,
23250000,
'chr22',
22535000,
22540000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23285000,
23290000,
'chr22',
22535000,
22540000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23280000,
23285000,
'chr22',
22705000,
22710000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23030000,
23040000,
'chr22',
22930000,
22940000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23190000,
23195000,
'chr22',
23155000,
23160000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23630000,
23640000,
'chr22',
23170000,
23180000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23280000,
23285000,
'chr22',
23195000,
23200000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50970000,
50980000,
'chr22',
23270000,
23280000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23625000,
23630000,
'chr22',
23300000,
23305000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23720000,
23730000,
'chr22',
23300000,
23310000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23465000,
23470000,
'chr22',
23305000,
23310000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23620000,
23625000,
'chr22',
23520000,
23525000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25070000,
25080000,
'chr22',
23680000,
23690000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24100000,
24110000,
'chr22',
23880000,
23890000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24190000,
24195000,
'chr22',
23885000,
23890000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25830000,
25835000,
'chr22',
23935000,
23940000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24190000,
24200000,
'chr22',
23970000,
23980000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25710000,
25715000,
'chr22',
23980000,
23985000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24190000,
24195000,
'chr22',
24110000,
24115000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24915000,
24920000,
'chr22',
24715000,
24720000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24910000,
24920000,
'chr22',
24820000,
24830000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25140000,
25150000,
'chr22',
25030000,
25040000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25985000,
25990000,
'chr22',
25690000,
25695000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26720000,
26730000,
'chr22',
25850000,
25860000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26170000,
26175000,
'chr22',
25855000,
25860000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26725000,
26730000,
'chr22',
26170000,
26175000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26725000,
26730000,
'chr22',
26290000,
26295000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
27040000,
27050000,
'chr22',
26760000,
26770000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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26860000,
'chr22',
26795000,
26800000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
27040000,
27050000,
'chr22',
26890000,
26900000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
28400000,
28410000,
'chr22',
27150000,
27160000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
28405000,
28410000,
'chr22',
28280000,
28285000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
29220000,
29230000,
'chr22',
28410000,
28420000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
28985000,
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'chr22',
28415000,
28420000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
29225000,
29230000,
'chr22',
28995000,
29000000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
29435000,
29440000,
'chr22',
28995000,
29000000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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29645000,
'chr22',
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
29250000,
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
29250000,
29255000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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29645000,
'chr22',
29560000,
29565000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
30480000,
30490000,
'chr22',
29780000,
29790000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
29790000,
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
30030000,
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
30030000,
30035000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
30500000,
30505000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
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30505000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
30680000,
30685000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
30785000,
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'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
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'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
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'chr22',
31030000,
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'chr22',
38210000,
38215000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39520000,
39530000,
'chr22',
39160000,
39170000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39395000,
39400000,
'chr22',
39265000,
39270000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39510000,
39515000,
'chr22',
39265000,
39270000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39545000,
39550000,
'chr22',
39265000,
39270000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39710000,
39715000,
'chr22',
39400000,
39405000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39510000,
39515000,
'chr22',
39405000,
39410000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39705000,
39710000,
'chr22',
39565000,
39570000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
39915000,
39920000,
'chr22',
39565000,
39570000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
40430000,
40435000,
'chr22',
39930000,
39935000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
40740000,
40745000,
'chr22',
39930000,
39935000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
40740000,
40750000,
'chr22',
40440000,
40450000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
41040000,
41045000,
'chr22',
40830000,
40835000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
41290000,
41300000,
'chr22',
40910000,
40920000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
41040000,
41045000,
'chr22',
40920000,
40925000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
41290000,
41300000,
'chr22',
41070000,
41080000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
41480000,
41485000,
'chr22',
41345000,
41350000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
41910000,
41915000,
'chr22',
41800000,
41805000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
42335000,
42340000,
'chr22',
42090000,
42095000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
42335000,
42340000,
'chr22',
42220000,
42225000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
42830000,
42835000,
'chr22',
42565000,
42570000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
43050000,
43055000,
'chr22',
43015000,
43020000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
43160000,
43165000,
'chr22',
43055000,
43060000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
43740000,
43745000,
'chr22',
43625000,
43630000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
43740000,
43745000,
'chr22',
43670000,
43675000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
43775000,
43780000,
'chr22',
43670000,
43675000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45020000,
45030000,
'chr22',
43780000,
43790000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
44480000,
44485000,
'chr22',
44390000,
44395000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45020000,
45025000,
'chr22',
44390000,
44395000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45020000,
45025000,
'chr22',
44480000,
44485000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45130000,
45135000,
'chr22',
45090000,
45095000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45490000,
45495000,
'chr22',
45215000,
45220000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45830000,
45835000,
'chr22',
45665000,
45670000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
45945000,
45950000,
'chr22',
45665000,
45670000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
47985000,
47990000,
'chr22',
46010000,
46015000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
46375000,
46380000,
'chr22',
46040000,
46045000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
46510000,
46515000,
'chr22',
46405000,
46410000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
46700000,
46710000,
'chr22',
46510000,
46520000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
46940000,
46950000,
'chr22',
46510000,
46520000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
46935000,
46940000,
'chr22',
46755000,
46760000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
48880000,
48890000,
'chr22',
47610000,
47620000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50315000,
50320000,
'chr22',
50160000,
50165000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50465000,
50470000,
'chr22',
50160000,
50165000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50650000,
50655000,
'chr22',
50160000,
50165000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50465000,
50470000,
'chr22',
50325000,
50330000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50650000,
50655000,
'chr22',
50585000,
50590000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50935000,
50940000,
'chr22',
50690000,
50695000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50760000,
50765000,
'chr22',
50710000,
50715000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
]
]
}
}
],
right: [
],
bottom: [
]
},
layout: {
w: 12,
h: 6,
x: 0,
y: 6,
i: '__a_',
moved: false,
static: false
},
selectionView: true
}
],
zoomLocks: {
locksByViewUid: {
__a_: 'lockWurst'
},
locksDict: {
lockWurst: {
__a_: [
1,
1,
1
]
}
}
},
locationLocks: {
locksByViewUid: {
__a_: 'lockWurst'
},
locksDict: {
lockWurst: {
__a_: [
1,
1,
1
]
}
}
}
};
export const fritzBug1 = {
editable: false,
trackSourceServers: [
'/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19&type=json&cum=1',
views: [
{
uid: 'a',
zoomFixed: true,
initialXDomain: [
2829728720,
2881033286
],
initialYDomain: [
2829728720,
2881033286
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: false,
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
tracks: {
top: [
{
uid: 'b',
type: 'horizontal-gene-annotations',
height: 60,
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
server: 'http://higlass.io/api/v1',
name: 'Gene Annotations',
options: {
name: 'Gene Annotations (hg19)',
minusStrandColor: '#999',
plusStrandColor: '#999'
}
},
{
uid: 'c',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
type: 'horizontal-chromosome-labels',
name: 'Chromosome Labels (hg19)',
height: 30
}
],
left: [
{
uid: 'd',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
type: 'vertical-chromosome-labels',
name: 'Chromosome Labels (hg19)',
width: 30
}
],
center: [
{
uid: 'e',
type: 'combined',
height: 200,
contents: [
{
uid: 'f',
server: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1',
tilesetUid: 'rao-gm12878-1kbmr',
type: 'heatmap',
options: {
colorRange: [
'#fff',
'#bbb',
'#777',
'#222'
],
maxZoom: null,
name: '',
orgName: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
}
}
],
position: 'center'
},
{
uid: 'a.2d',
type: '2d-chromosome-annotations',
chromInfoPath: 'https://hgs.vcg.rc.fas.harvard.edu/api/v1/chrom-sizes/?id=hg19',
options: {
minRectWidth: 6,
minRectHeight: 6,
regions: [
[
'chr22',
17535000,
17540000,
'chr22',
17395000,
17400000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
17980000,
17990000,
'chr22',
17400000,
17410000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
17980000,
17985000,
'chr22',
17650000,
17655000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
18250000,
18260000,
'chr22',
17690000,
17700000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
18550000,
18555000,
'chr22',
18310000,
18315000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
18625000,
18630000,
'chr22',
18590000,
18595000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
20260000,
20270000,
'chr22',
18940000,
18950000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
19460000,
19465000,
'chr22',
19160000,
19165000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
19900000,
19905000,
'chr22',
19720000,
19725000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
20270000,
20275000,
'chr22',
20145000,
20150000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
20810000,
20815000,
'chr22',
20765000,
20770000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
21050000,
21060000,
'chr22',
20770000,
20780000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
21050000,
21060000,
'chr22',
20940000,
20950000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
21040000,
21045000,
'chr22',
20960000,
20965000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
22295000,
22300000,
'chr22',
22060000,
22065000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23250000,
23255000,
'chr22',
22380000,
22385000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23280000,
23290000,
'chr22',
22380000,
22390000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23480000,
23485000,
'chr22',
22520000,
22525000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23245000,
23250000,
'chr22',
22535000,
22540000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23285000,
23290000,
'chr22',
22535000,
22540000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23280000,
23285000,
'chr22',
22705000,
22710000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23030000,
23040000,
'chr22',
22930000,
22940000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23190000,
23195000,
'chr22',
23155000,
23160000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23630000,
23640000,
'chr22',
23170000,
23180000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23280000,
23285000,
'chr22',
23195000,
23200000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50970000,
50980000,
'chr22',
23270000,
23280000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23625000,
23630000,
'chr22',
23300000,
23305000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23720000,
23730000,
'chr22',
23300000,
23310000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23465000,
23470000,
'chr22',
23305000,
23310000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
23620000,
23625000,
'chr22',
23520000,
23525000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25070000,
25080000,
'chr22',
23680000,
23690000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24100000,
24110000,
'chr22',
23880000,
23890000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24190000,
24195000,
'chr22',
23885000,
23890000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25830000,
25835000,
'chr22',
23935000,
23940000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24190000,
24200000,
'chr22',
23970000,
23980000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25710000,
25715000,
'chr22',
23980000,
23985000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24190000,
24195000,
'chr22',
24110000,
24115000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24915000,
24920000,
'chr22',
24715000,
24720000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
24910000,
24920000,
'chr22',
24820000,
24830000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25140000,
25150000,
'chr22',
25030000,
25040000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
25985000,
25990000,
'chr22',
25690000,
25695000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26720000,
26730000,
'chr22',
25850000,
25860000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26170000,
26175000,
'chr22',
25855000,
25860000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26725000,
26730000,
'chr22',
26170000,
26175000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26725000,
26730000,
'chr22',
26290000,
26295000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
27040000,
27050000,
'chr22',
26760000,
26770000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
26855000,
26860000,
'chr22',
26795000,
26800000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
27040000,
27050000,
'chr22',
26890000,
26900000,
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50165000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50465000,
50470000,
'chr22',
50325000,
50330000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50650000,
50655000,
'chr22',
50585000,
50590000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50935000,
50940000,
'chr22',
50690000,
50695000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
],
[
'chr22',
50760000,
50765000,
'chr22',
50710000,
50715000,
'rgba(255, 85, 0, 0.66)',
'rgba(255, 85, 0, 0.66)'
]
]
}
}
],
right: [
],
bottom: [
]
},
layout: {
w: 12,
h: 12,
x: 0,
y: 0,
i: 'a',
moved: false,
static: false
}
}
],
zoomLocks: {
},
locationLocks: {
}
};
export const project1D = {
zoomFixed: false,
views: [
{
layout: {
w: 12,
h: 5,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
},
uid: 'aa',
initialYDomain: [
2541577820.2587624,
2541623717.69973
],
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
initialXDomain: [
2539896518.022037,
2541205445.042225
],
tracks: {
left: [
{
uid: 'vline1',
tilesetUid: 'PjIJKXGbSNCalUZO21e_HQ',
height: 20,
width: 20,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'vertical-line',
options: {
name: 'GM12878-E116-H3K27ac.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27ac.fc.signal'
}
],
top: [
{
uid: 'd1YqhSqQRFynu4r34zKZhg',
tilesetUid: 'PjIJKXGbSNCalUZO21e_HQ',
height: 20,
width: 770,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K27ac.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27ac.fc.signal'
},
{
uid: 'bkUDRNN-SfyvT4YxgUy3yA',
tilesetUid: 'e0DYtZBSTqiMLHoaimsSpg',
height: 20,
width: 770,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K4me1.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'grey',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K4me1.fc.signal'
},
{
uid: 'X4e_1DKiQHmyghDa6lLMVA',
height: 30,
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
position: 'top',
type: 'horizontal-chromosome-labels',
options: {},
name: 'Chromosome Labels (hg19)',
width: 770
},
{
uid: 'ga1',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
height: 60,
width: 770,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black',
plusStrandColor: 'blue',
name: 'Gene Annotations (hg19)',
labelPosition: 'hidden',
minusStrandColor: 'red'
},
name: 'Gene Annotations (hg19)'
}
],
right: [],
center: [],
bottom: []
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
genomePositionSearchBoxVisible: true
},
{
layout: {
w: 12,
h: 4,
x: 0,
y: 5,
i: 'UC6ZZrytRfWwSEDs2R5Yiw',
moved: false,
static: false
},
uid: 'bb',
initialYDomain: [
2541533342.320696,
2541530803.965382
],
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
initialXDomain: [
2540546809.6285257,
2540697158.366323
],
tracks: {
left: [
{
uid: 'vline2',
tilesetUid: 'PjIJKXGbSNCalUZO21e_HQ',
height: 20,
width: 20,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'vertical-line',
options: {
name: 'GM12878-E116-H3K27ac.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27ac.fc.signal'
}
],
top: [
{
uid: 'line1',
tilesetUid: 'PjIJKXGbSNCalUZO21e_HQ',
height: 20,
width: 770,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K27ac.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27ac.fc.signal'
},
{
uid: 'line2',
tilesetUid: 'e0DYtZBSTqiMLHoaimsSpg',
height: 20,
width: 770,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K4me1.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'grey',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K4me1.fc.signal'
},
{
uid: 'X4e_1DKiQHmyghDa6lLMVA',
height: 30,
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
position: 'top',
type: 'horizontal-chromosome-labels',
options: {},
name: 'Chromosome Labels (hg19)',
width: 770
},
{
uid: 'ga2',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
height: 60,
width: 770,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black',
plusStrandColor: 'blue',
name: 'Gene Annotations (hg19)',
labelPosition: 'hidden',
minusStrandColor: 'red'
},
name: 'Gene Annotations (hg19)'
}
],
right: [],
center: [],
bottom: []
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
genomePositionSearchBoxVisible: true
}
],
editable: true,
exportViewUrl: '/api/v1/viewconfs',
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
trackSourceServers: [
'http://higlass.io/api/v1'
],
locationLocks: {
locksByViewUid: {
aa: 'aP6TEPmQQ9uynj1SjeNOiw',
ewZvJwlDSei_dbpIAkGMlg: 'aP6TEPmQQ9uynj1SjeNOiw'
},
locksDict: {
aP6TEPmQQ9uynj1SjeNOiw: {
aa: [
1550000000,
1550000000,
3380588.876772046
],
ewZvJwlDSei_dbpIAkGMlg: [
1550000000.0000002,
1549999999.9999993,
3380588.876772046
]
}
}
}
};
export const noGPSB = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1796142508.3343146,
1802874737.269993
],
initialYDomain: [
1795888772.6557815,
1806579890.9341388
],
tracks: {
top: [
{
name: 'Gene Annotations (mm9)',
server: 'http://higlass.io/api/v1',
tilesetUid: 'GUm5aBiLRCyz2PsBea7Yzg',
uid: 'e8H0Eve5TRWlc6XymPQejg',
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black',
labelPosition: 'hidden',
plusStrandColor: 'blue',
minusStrandColor: 'red',
name: 'Gene Annotations (mm9)',
coordSystem: 'mm9'
},
width: 20,
height: 60,
position: 'top'
},
{
uid: 'line1',
tilesetUid: 'PjIJKXGbSNCalUZO21e_HQ',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K27ac.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27ac.fc.signal'
},
{
uid: 'line2',
tilesetUid: 'M-LTWpoGQ0iQvfJBtzXg4A',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
}
},
{
uid: 'line3',
tilesetUid: 'JBs7pPAXQjOySJcct2jN4w',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
}
}
],
left: [],
center: [],
right: [],
bottom: []
},
layout: {
w: 5,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
]
};
export const onlyGPSB = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1796142508.3343146,
1802874737.269993
],
initialYDomain: [
1795888772.6557815,
1806579890.9341388
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBox: {
autocompleteServer: 'http://higlass.io/api/v1',
autocompleteId: 'OHJakQICQD6gTD7skx4EWA',
chromInfoServer: 'http://higlass.io/api/v1',
chromInfoId: 'hg19',
visible: true
},
tracks: {
top: [
],
left: [],
center: [],
right: [],
bottom: []
},
layout: {
w: 5,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
]
};
export const testViewConfX2 = {
zoomFixed: false,
views: [
{
layout: {
w: 12,
h: 7,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
},
uid: 'aa',
initialYDomain: [
2541582834.764707,
2541616852.418678
],
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
initialXDomain: [
2539901418.9267535,
2541204913.576626
],
tracks: {
left: [],
top: [
{
uid: 'line1',
tilesetUid: 'PjIJKXGbSNCalUZO21e_HQ',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K27ac.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27ac.fc.signal'
},
{
uid: 'line2',
tilesetUid: 'e0DYtZBSTqiMLHoaimsSpg',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K4me1.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'grey',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K4me1.fc.signal'
},
{
uid: 'X4e_1DKiQHmyghDa6lLMVA',
height: 30,
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
position: 'top',
type: 'horizontal-chromosome-labels',
options: {},
name: 'Chromosome Labels (hg19)',
width: 843
},
{
uid: 'OHJakQICQD6gTD7skx4EWA',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
height: 60,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black',
plusStrandColor: 'blue',
name: 'Gene Annotations (hg19)',
labelPosition: 'hidden',
minusStrandColor: 'red'
},
name: 'Gene Annotations (hg19)'
},
{
uid: 'Fbd3ugOZR_qnmogyxBtAcQ',
tilesetUid: 'cE0nGyd0Q_yVYSyBUe89Ww',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K4me3.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'green',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K4me3.fc.signal'
},
{
uid: 'aTpD5OitQmmB9ljbx_zjBw',
tilesetUid: 'PdAaSdibTLK34hCw7ubqKA',
height: 20,
width: 843,
position: 'top',
server: 'http://higlass.io/api/v1',
type: 'horizontal-line',
options: {
name: 'GM12878-E116-H3K27me3.fc.signal',
valueScaling: 'linear',
lineStrokeColor: 'red',
labelPosition: 'topLeft',
labelColor: 'black',
axisPositionHorizontal: 'right'
},
name: 'GM12878-E116-H3K27me3.fc.signal'
}
],
right: [],
center: [],
bottom: []
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
genomePositionSearchBoxVisible: true
}
],
editable: true,
exportViewUrl: '/api/v1/viewconfs',
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
trackSourceServers: [
'http://higlass.io/api/v1'
],
locationLocks: {
locksByViewUid: {
aa: 'AWt52E50Q9eHc02T2HsRWg',
ewZvJwlDSei_dbpIAkGMlg: 'AWt52E50Q9eHc02T2HsRWg'
},
locksDict: {
AWt52E50Q9eHc02T2HsRWg: {
aa: [
1550000000,
1550000000,
3380588.876772046
],
ewZvJwlDSei_dbpIAkGMlg: [
1550000000.0000002,
1549999999.9999993,
3380588.876772046
]
}
}
}
};
export const testViewConfX1 = {
zoomFixed: false,
views: [
{
layout: {
w: 12,
h: 16,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
},
uid: 'aa',
initialYDomain: [
1096121668.3853111,
1134280885.3796637
],
autocompleteSource: '/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
initialXDomain: [
1118855399.4455326,
1892081638.541622
],
tracks: {
bottom: [],
top: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'horizontal-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'hline1'
},
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'horizontal-bar',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'hbar1'
},
{
uid: 'N5Ylzin9TLGToeJs3BKVLA',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
server: 'http://higlass.io/api/v1',
width: 1007,
position: 'top',
height: 130,
type: 'horizontal-heatmap',
options: {
maxZoom: '13',
labelColor: 'black',
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
},
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
}
],
left: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'vertical-bar',
options: {
labelColor: 'red',
labelPosition: 'hidden',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'vbar1'
},
{
uid: 'N5Y',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
server: 'http://higlass.io/api/v1',
width: 130,
position: 'top',
height: 230,
type: 'vertical-heatmap',
options: {
maxZoom: '13',
labelColor: 'black',
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
},
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
}
],
right: [],
center: [
{
uid: 'c1',
type: 'combined',
height: 1088,
contents: [
{
filetype: 'cooler',
name: 'Dixon et al. (2015) H1_TB HindIII (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'B2LevKBtRNiCMX372rRPLQ',
uid: 'heatmap3',
type: 'heatmap',
options: {
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'outside',
colorbarPosition: 'topLeft',
name: 'New tileset'
},
width: 20,
height: 20,
binsPerDimension: 256,
position: 'center'
}
],
position: 'center',
options: {},
width: 961
}
],
},
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
genomePositionSearchBoxVisible: true
}
],
editable: true,
exportViewUrl: '/api/v1/viewconfs',
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
trackSourceServers: [
'http://higlass.io/api/v1'
],
locationLocks: {
locksByViewUid: {
aa: 'OVICp__mSY28et2KqFyBFg',
ewZvJwlDSei_dbpIAkGMlg: 'OVICp__mSY28et2KqFyBFg'
},
locksDict: {
OVICp__mSY28et2KqFyBFg: {
aa: [
1550000000,
1550000000,
3380588.876772046
],
ewZvJwlDSei_dbpIAkGMlg: [
1550000000.0000002,
1549999999.9999993,
3380588.876772046
]
}
}
}
};
export const largeHorizontalHeatmapTrack = {
filetype: 'cooler',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
uid: 'hhl1',
type: 'horizontal-heatmap',
options: {
labelPosition: 'bottomRight',
labelColor: 'black',
colorRange: ['rgba(255,255,255,1)', 'rgba(0,0,0,1)'],
maxZoom: null,
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
colorbarPosition: 'topLeft'
},
width: 20,
height: 400,
maxWidth: 4194304000,
binsPerDimension: 256,
position: 'top'
};
export const horizontalHeatmapTrack = {
filetype: 'cooler',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
uid: 'hh1',
type: 'horizontal-heatmap',
options: {
labelPosition: 'bottomRight',
labelColor: 'black',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
colorbarPosition: 'topLeft'
},
width: 20,
height: 200,
};
export const verticalHeatmapTrack = {
name: 'Rao et al. (2014) HUVEC MboI (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'JO9CouMTS_WKLnlYBRcw8A',
uid: 'vh1',
type: 'vertical-heatmap',
options: {
labelPosition: 'bottomRight',
labelColor: 'black',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'inside',
colorbarPosition: 'topRight',
name: 'Rao et al. (2014) HUVEC MboI (allreps) 1kb'
},
width: 100,
height: 100,
position: 'left'
};
export const horizontalDiagonalTrackViewConf = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1',
'http://localhost:8989/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
782035593.0218927,
3161702482.099383
],
initialYDomain: [
1142928773.5006099,
2963035748.0921783
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
type: 'horizontal-chromosome-labels',
position: 'top',
name: 'Chromosome Labels (hg19)',
height: 57,
uid: 'hcl',
options: {},
width: 1161
}
],
left: [],
center: [
/*
{
"server": "http://higlass.io/api/v1",
"tilesetUid": "CQMd6V_cRw6iCI_-Unl3PQ",
"type": "heatmap",
"position": "center",
"options": {
"colorRange": [
"white",
"rgba(245,166,35,1.0)",
"rgba(208,2,27,1.0)",
"black"
],
"colorbarPosition": "topLeft",
"colorbarOrientation": "vertical",
"colorbarLabelsPosition": "outside",
"maxZoom": null,
"labelPosition": "bottomRight",
"name": "Rao et al. (2014) GM12878 MboI (allreps) 1kb"
},
"uid": "heatmap1",
"name": "Rao et al. (2014) GM12878 MboI (allreps) 1kb",
"binsPerDimension": 256
}
*/
],
right: [],
bottom: []
},
layout: {
w: 12,
h: 4,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {},
locksDict: {}
}
};
export const chromInfoTrack = {
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
type: 'horizontal-chromosome-labels',
position: 'top',
name: 'Chromosome Labels (hg19)',
height: 30,
uid: 'I1QUF22JQJuJ38j9PS4iqw',
options: {}
};
export const heatmapTrack = {
filetype: 'cooler',
name: 'Dixon et al. (2015) H1_TB HindIII (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'B2LevKBtRNiCMX372rRPLQ',
uid: 'heatmap3',
type: 'heatmap',
options: {
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'outside',
colorbarPosition: 'topLeft',
name: 'New tileset'
},
width: 20,
height: 20,
binsPerDimension: 256,
position: 'center'
};
export const twoViewConfig = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1796142508.3343146,
1802874737.269993
],
initialYDomain: [
1795888772.6557815,
1806579890.9341388
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'horizontal-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'line1'
}
],
left: [],
center: [
{
uid: 'c1',
type: 'combined',
height: 200,
contents: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
position: 'center',
options: {
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
colorbarPosition: 'topLeft',
colorbarOrientation: 'vertical',
maxZoom: null,
labelPosition: 'bottomRight',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
},
uid: 'heatmap1',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
binsPerDimension: 256
},
{
type: '2d-chromosome-grid',
local: true,
orientation: '2d',
name: 'Chromosome Grid (hg19)',
thumbnail: null,
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
uid: 'LUVqXXu2QYiO8XURIwyUyA',
options: {
gridStrokeWidth: 1,
gridStrokeColor: 'grey'
},
position: 'center'
}
],
position: 'center',
options: {}
}
],
right: [],
bottom: []
},
layout: {
w: 5,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
},
{
uid: 'view2',
initialXDomain: [
1796142508.3343008,
1802874737.270007
],
initialYDomain: [
1795888772.6557593,
1806579890.9341605
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: true,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Ctcfsc15914c20StdSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'b6qFe7fOSnaX-YkP2kzN1w',
uid: 'line2',
type: 'horizontal-line',
options: {
labelColor: 'black',
labelPosition: 'topLeft',
axisPositionHorizontal: 'left',
lineStrokeColor: 'blue',
valueScaling: 'linear',
name: 'wgEncodeSydhTfbsGm12878Ctcfsc15914c20StdSig.hitile'
},
width: 20,
height: 20,
position: 'top'
}
],
left: [],
center: [
{
uid: 'c2',
type: 'combined',
contents: [
{
filetype: 'cooler',
name: 'Dixon et al. (2015) H1_TB HindIII (allreps) 1kb',
server: 'http://higlass.io/api/v1',
tilesetUid: 'clU7yGb-S7eY4yNbdDlj9w',
uid: 'heatmap2',
type: 'heatmap',
options: {
labelPosition: 'bottomRight',
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
maxZoom: null,
colorbarLabelsPosition: 'outside',
colorbarPosition: 'topLeft',
name: 'Dixon et al. (2015) H1_TB HindIII (allreps) 1kb'
},
width: 20,
height: 20,
binsPerDimension: 256,
position: 'center'
}
],
position: 'center',
options: {}
}
],
right: [],
bottom: []
},
layout: {
w: 6,
h: 12,
x: 6,
y: 0,
i: 'view2',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {
view2: 'JAFSZPdmSWe72WgTnVDtbA',
aa: 'JAFSZPdmSWe72WgTnVDtbA'
},
locksDict: {
JAFSZPdmSWe72WgTnVDtbA: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
},
locationLocks: {
locksByViewUid: {
view2: 'fRq4SRH8TSyVveKqebWsxw',
aa: 'fRq4SRH8TSyVveKqebWsxw'
},
locksDict: {
fRq4SRH8TSyVveKqebWsxw: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
}
};
export const valueIntervalTrackViewConf = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1',
'http://127.0.0.1:8989/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'view2',
initialXDomain: [
-1521535012.049488,
4253785557.7320385
],
initialYDomain: [
-1074275219.9894483,
5601783420.308463
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
genomePositionSearchBoxVisible: false,
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
filetype: 'beddb',
name: '9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa.consensus.20170119.somatic.cna.annotated.txt.multires',
server: 'http://127.0.0.1:8989/api/v1',
tilesetUid: 'WRfF4fKBR1S8gS5RSd-7YQ',
uid: 'Pq_LNH6SRISVqrUl4n53Dg',
type: 'horizontal-1d-value-interval',
options: {
name: '9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa.consensus.20170119.somatic.cna.annotated.txt.multires'
},
width: 902,
height: 36,
position: 'top'
},
{
filetype: 'beddb',
name: 'Gene Annotations (hg19)',
server: 'http://higlass.io/api/v1',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
uid: 'ElEL52SpQiWEtxaa5X4NhA',
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black',
labelPosition: 'hidden',
plusStrandColor: 'blue',
minusStrandColor: 'red',
name: 'Gene Annotations (hg19)'
},
width: 20,
height: 60,
position: 'top'
},
{
type: 'horizontal-chromosome-labels',
local: true,
orientation: '1d-horizontal',
minHeight: 30,
name: 'Chromosome Axis (mm9)',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
thumbnail: null,
uid: 'K8ctyFcBQGCXnHBSeCQpaQ',
options: {},
width: 20,
height: 30,
position: 'top'
}
],
left: [
{
filetype: 'beddb',
name: 'Gene Annotations (hg19)',
server: 'http://higlass.io/api/v1',
tilesetUid: 'OHJakQICQD6gTD7skx4EWA',
uid: 'L5FM6--PTeaof462uQB0ww',
type: 'vertical-gene-annotations',
options: {
labelColor: 'black',
labelPosition: 'hidden',
plusStrandColor: 'blue',
minusStrandColor: 'red',
name: 'Gene Annotations (hg19)'
},
width: 60,
height: 20,
position: 'left'
},
{
type: 'vertical-chromosome-labels',
local: true,
orientation: '1d-vertical',
minWidth: 30,
minHeight: 30,
name: 'Chromosome Axis (hg19)',
// These keys were added later, but had no effect because of order:
// server: 'http://higlass.io/api/v1',
// tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
thumbnail: null,
uid: 'Boe4m22pQwS2D7QqVpaV6w',
options: {},
width: 30,
height: 30,
position: 'left'
}
],
center: [
{
uid: 'ZDQ72_nqQiqaC3ZR2pcB4Q',
type: 'combined',
contents: [
{
filetype: 'bed2ddb',
name: '9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa.pcawg_consensus_1.6.161022.somatic.sv.bedpe.multires.db',
server: 'http://127.0.0.1:8989/api/v1',
tilesetUid: 'Vohl6uJnRfCjKrMh7HCoUA',
uid: 'JYciTCMsSPyHZ87vveCuIQ',
type: 'square-markers',
options: {
labelColor: 'black',
labelPosition: 'hidden',
name: '9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa.pcawg_consensus_1.6.161022.somatic.sv.bedpe.multires.db'
},
width: 20,
height: 20,
position: 'center'
}
],
position: 'center',
options: {}
}
],
right: [],
bottom: []
},
layout: {
w: 8,
h: 12,
x: 0,
y: 0,
i: 'view2',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {},
locksDict: {}
},
locationLocks: {
locksByViewUid: {
view2: 'TjZWrnsgR3eg5v_iFXC1vQ',
aa: 'TjZWrnsgR3eg5v_iFXC1vQ'
},
locksDict: {
TjZWrnsgR3eg5v_iFXC1vQ: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
}
};
export const oneViewConfig = {
editable: true,
zoomFixed: false,
trackSourceServers: [
'http://higlass.io/api/v1'
],
exportViewUrl: 'http://higlass.io/api/v1/viewconfs/',
views: [
{
uid: 'aa',
initialXDomain: [
1796142508.3343146,
1802874737.269993
],
initialYDomain: [
1795888772.6557815,
1806579890.9341388
],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
chromInfoPath: '//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv',
tracks: {
top: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'horizontal-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'line1'
}
],
left: [
{
filetype: 'hitile',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
server: 'http://higlass.io/api/v1',
tilesetUid: 'F2vbUeqhS86XkxuO1j2rPA',
type: 'vertical-line',
options: {
labelColor: 'red',
labelPosition: 'hidden',
axisPositionHorizontal: 'right',
lineStrokeColor: 'blue',
name: 'wgEncodeSydhTfbsGm12878Rad21IggrabSig.hitile',
valueScaling: 'log'
},
width: 20,
height: 20,
position: 'top',
uid: 'vline1'
}
],
center: [
{
uid: 'c1',
type: 'combined',
height: 200,
contents: [
{
server: 'http://higlass.io/api/v1',
tilesetUid: 'CQMd6V_cRw6iCI_-Unl3PQ',
type: 'heatmap',
position: 'center',
options: {
colorRange: [
'white',
'rgba(245,166,35,1.0)',
'rgba(208,2,27,1.0)',
'black'
],
colorbarPosition: 'topLeft',
colorbarOrientation: 'vertical',
colorbarLabelsPosition: 'outside',
maxZoom: null,
labelPosition: 'bottomRight',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb'
},
uid: 'heatmap1',
name: 'Rao et al. (2014) GM12878 MboI (allreps) 1kb',
binsPerDimension: 256
},
{
type: '2d-chromosome-grid',
local: true,
orientation: '2d',
name: 'Chromosome Grid (hg19)',
thumbnail: null,
server: 'http://higlass.io/api/v1',
tilesetUid: 'N12wVGG9SPiTkk03yUayUw',
uid: 'LUVqXXu2QYiO8XURIwyUyA',
options: {
gridStrokeWidth: 1,
gridStrokeColor: 'grey'
},
position: 'center'
}
],
position: 'center',
options: {}
}
],
right: [],
bottom: []
},
layout: {
w: 5,
h: 12,
x: 0,
y: 0,
i: 'aa',
moved: false,
static: false
}
}
],
zoomLocks: {
locksByViewUid: {
view2: 'JAFSZPdmSWe72WgTnVDtbA',
aa: 'JAFSZPdmSWe72WgTnVDtbA'
},
locksDict: {
JAFSZPdmSWe72WgTnVDtbA: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
},
locationLocks: {
locksByViewUid: {
view2: 'fRq4SRH8TSyVveKqebWsxw',
aa: 'fRq4SRH8TSyVveKqebWsxw'
},
locksDict: {
fRq4SRH8TSyVveKqebWsxw: {
view2: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
],
aa: [
1812727561.5083356,
1873757116.378131,
475954.14177536964
]
}
}
}
};
export const paperFigure1 = {
zoomFixed: false,
views: [{
layout: {
i: 'CxSCeaTbQbmmz2_3MX23Sw', h: 7, moved: false, static: false, w: 6, y: 6, x: 0
},
uid: 'CxSCeaTbQbmmz2_3MX23Sw',
initialYDomain: [1962672822.9475927, 1980413599.926114],
autocompleteSource: 'http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&',
initialXDomain: [1955319057.3167546, 1983601455.3984554],
tracks: {
bottom: [],
top: [{
orientation: '1d-horizontal', name: 'Chromosome Axis (mm9)', local: true, minHeight: 30, thumbnail: null, width: 462, chromInfoPath: '//s3.amazonaws.com/pkerp/data/mm9/chromSizes.tsv', position: 'top', height: 30, type: 'horizontal-chromosome-labels', options: {}, uid: 'EsCrHgpLQoSO8fJo8PX-9w'
}, {
name: 'Gene Annotations (mm9)',
maxWidth: 4294967296,
tilesetUid: 'GUm5aBiLRCyz2PsBea7Yzg',
filetype: 'beddb',
server: 'http://higlass.io/api/v1',
width: 692,
position: 'top',
height: 60,
type: 'horizontal-gene-annotations',
options: {
labelColor: 'black', plusStrandColor: 'black', minusStrandColor: 'grey', labelPosition: 'hidden', name: 'Gene Annotations (mm9)'
},
uid: 'TrVU7C7cTuGdf6rqqOqVsA'
}, {
name: 'WT H3K27ac (chr14)',
maxWidth: 134217728,
tilesetUid: 'MnHp30AcSGmUf36zPaf1KA',
filetype: 'hitile',
server: 'http://higlass.io/api/v1',
width: 462,
position: 'top',
height: 31,
type: 'horizontal-line',
options: {
name: 'WT H3K27ac (chr14)', valueScaling: 'linear', lineStrokeColor: 'green', labelPosition: 'topLeft', labelColor: 'black', axisPositionHorizontal: 'right'
},
uid: 'H3adAzSXQCS1ejqu_etcXA'
}, {
name: 'Schwarzer et al (2016) WT H3K4me3 (chr14)',
maxWidth: 134217728,
tilesetUid: 'EsZnlyoZQzenXHfeoxLsPw',
filetype: 'hitile',
server: 'http://higlass.io/api/v1',
width: 462,
position: 'top',
height: 25,
type: 'horizontal-line',
options: {
name: 'WT H3K4me3 (chr14)', valueScaling: 'linear', lineStrokeColor: 'grey', labelPosition: 'topLeft', labelColor: 'black', axisPositionHorizontal: 'right'
},
uid: 'a0FwXQAzTY-wuIA0VOCPPQ'
}],
right: [{
name: 'Schwarzer et al (2016) WT H3K27ac (chr14)',
maxWidth: 134217728,
tilesetUid: 'MnHp30AcSGmUf36zPaf1KA',
filetype: 'hitile',
server: 'http://higlass.io/api/v1',
width: 28,
position: 'right',
height: 345,
type: 'vertical-line',
options: {
name: 'WT H3K27ac (chr14)', valueScaling: 'linear', lineStrokeColor: 'green', labelPosition: 'bottomLeft', axisPositionVertical: 'top', labelColor: 'black'
},
uid: 'Lza_OzzQReSm-hIoTTk2fA'
}, {
name: 'Schwarzer et al (2016) WT H3K4me3 (chr14)',
maxWidth: 134217728,
tilesetUid: 'EsZnlyoZQzenXHfeoxLsPw',
filetype: 'hitile',
server: 'http://higlass.io/api/v1',
width: 22,
position: 'right',
height: 345,
type: 'vertical-line',
options: {
name: 'WT H3K4me3 (chr14)', valueScaling: 'linear', lineStrokeColor: 'grey', labelPosition: 'bottomLeft', axisPositionVertical: 'top', labelColor: 'black'
},
uid: 'K3bc4N4mSu2cVOmR1PHTwQ'
}],
center: [{
position: 'center',
type: 'combined',
uid: 'NxjqAn6FS4OTeTWslGK2cw',
contents: [{
uid: 'BmYR9dxuR9WP6nGeWQoXug',
maxWidth: 4194304000,
tilesetUid: 'cTc3lt_7StSgcrr1kHWidQ',
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