https://github.com/satijalab/seurat
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Tip revision: 90a9d66f911746bdbab70f551740c646688091ba authored by timoast on 07 October 2021, 18:21:01 UTC
Don't use suggested packages
Tip revision: 90a9d66
Read10X_Image.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/preprocessing.R
\name{Read10X_Image}
\alias{Read10X_Image}
\title{Load a 10X Genomics Visium Image}
\usage{
Read10X_Image(
  image.dir,
  image.name = "tissue_lowres_image.png",
  filter.matrix = TRUE,
  ...
)
}
\arguments{
\item{image.dir}{Path to directory with 10X Genomics visium image data;
should include files \code{tissue_lowres_image.png},}

\item{image.name}{The file name of the image. Defaults to tissue_lowres_image.png.
\code{scalefactors_json.json} and \code{tissue_positions_list.csv}}

\item{filter.matrix}{Filter spot/feature matrix to only include spots that
have been determined to be over tissue.}

\item{...}{Ignored for now}
}
\value{
A \code{\link{VisiumV1}} object
}
\description{
Load a 10X Genomics Visium Image
}
\seealso{
\code{\link{VisiumV1}} \code{\link{Load10X_Spatial}}
}
\concept{preprocessing}
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