https://github.com/satijalab/seurat
Tip revision: ff03fdf21f1b8fea9ee247d0fd83df5811507027 authored by AustinHartman on 05 December 2022, 22:48:27 UTC
Merge branch 'master' into release/4.3.0
Merge branch 'master' into release/4.3.0
Tip revision: ff03fdf
GetTissueCoordinates.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/objects.R
\name{GetTissueCoordinates.SlideSeq}
\alias{GetTissueCoordinates.SlideSeq}
\alias{GetTissueCoordinates.STARmap}
\alias{GetTissueCoordinates.VisiumV1}
\title{Get Tissue Coordinates}
\usage{
\method{GetTissueCoordinates}{SlideSeq}(object, ...)
\method{GetTissueCoordinates}{STARmap}(object, qhulls = FALSE, ...)
\method{GetTissueCoordinates}{VisiumV1}(
object,
scale = "lowres",
cols = c("imagerow", "imagecol"),
...
)
}
\arguments{
\item{object}{An object}
\item{...}{Arguments passed to other methods}
\item{qhulls}{return qhulls instead of centroids}
\item{scale}{A factor to scale the coordinates by; choose from: 'tissue',
'fiducial', 'hires', 'lowres', or \code{NULL} for no scaling}
\item{cols}{Columns of tissue coordinates data.frame to pull}
}
\description{
Get Tissue Coordinates
}
\seealso{
\code{\link[SeuratObject:GetTissueCoordinates]{SeuratObject::GetTissueCoordinates}}
}
\concept{objects}
\concept{spatial}