https://github.com/satijalab/seurat
Tip revision: ff03fdf21f1b8fea9ee247d0fd83df5811507027 authored by AustinHartman on 05 December 2022, 22:48:27 UTC
Merge branch 'master' into release/4.3.0
Merge branch 'master' into release/4.3.0
Tip revision: ff03fdf
SingleExIPlot.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/visualization.R
\name{SingleExIPlot}
\alias{SingleExIPlot}
\title{Plot a single expression by identity on a plot}
\usage{
SingleExIPlot(
data,
idents,
split = NULL,
type = "violin",
sort = FALSE,
y.max = NULL,
adjust = 1,
pt.size = 0,
cols = NULL,
seed.use = 42,
log = FALSE,
add.noise = TRUE,
raster = NULL
)
}
\arguments{
\item{data}{Data to plot}
\item{idents}{Idents to use}
\item{split}{Use a split violin plot}
\item{type}{Make either a \dQuote{ridge} or \dQuote{violin} plot}
\item{sort}{Sort identity classes (on the x-axis) by the average
expression of the attribute being potted}
\item{y.max}{Maximum Y value to plot}
\item{adjust}{Adjust parameter for geom_violin}
\item{pt.size}{Size of points for violin plots}
\item{cols}{Colors to use for plotting}
\item{seed.use}{Random seed to use. If NULL, don't set a seed}
\item{log}{plot Y axis on log10 scale}
\item{add.noise}{determine if adding small noise for plotting}
\item{raster}{Convert points to raster format. Requires 'ggrastr' to be installed.
default is \code{NULL} which automatically rasterizes if ggrastr is installed and
number of points exceed 100,000.}
}
\value{
A ggplot-based Expression-by-Identity plot
}
\description{
Plot a single expression by identity on a plot
}
\keyword{internal}