https://github.com/satijalab/seurat
Tip revision: ff03fdf21f1b8fea9ee247d0fd83df5811507027 authored by AustinHartman on 05 December 2022, 22:48:27 UTC
Merge branch 'master' into release/4.3.0
Merge branch 'master' into release/4.3.0
Tip revision: ff03fdf
VizDimLoadings.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/visualization.R
\name{VizDimLoadings}
\alias{VizDimLoadings}
\title{Visualize Dimensional Reduction genes}
\usage{
VizDimLoadings(
object,
dims = 1:5,
nfeatures = 30,
col = "blue",
reduction = "pca",
projected = FALSE,
balanced = FALSE,
ncol = NULL,
combine = TRUE
)
}
\arguments{
\item{object}{Seurat object}
\item{dims}{Number of dimensions to display}
\item{nfeatures}{Number of genes to display}
\item{col}{Color of points to use}
\item{reduction}{Reduction technique to visualize results for}
\item{projected}{Use reduction values for full dataset (i.e. projected
dimensional reduction values)}
\item{balanced}{Return an equal number of genes with + and - scores. If
FALSE (default), returns the top genes ranked by the scores absolute values}
\item{ncol}{Number of columns to display}
\item{combine}{Combine plots into a single \code{patchwork}
ggplot object. If \code{FALSE}, return a list of ggplot objects}
}
\value{
A \code{patchwork} ggplot object if
\code{combine = TRUE}; otherwise, a list of ggplot objects
}
\description{
Visualize top genes associated with reduction components
}
\examples{
data("pbmc_small")
VizDimLoadings(object = pbmc_small)
}
\concept{visualization}