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- refs/tags/16.1.0
- refs/tags/16.1.1
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- refs/tags/galaxy-auth-20.5.0
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- refs/tags/galaxy-containers-19.9.0
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- refs/tags/galaxy-data-20.5.0
- refs/tags/galaxy-data-20.9.0
- refs/tags/galaxy-job-execution-20.5.0
- refs/tags/galaxy-job-execution-20.9.0
- refs/tags/galaxy-job-metrics-19.9.0
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- refs/tags/galaxy-web-apps-20.5.0
- refs/tags/galaxy-web-framework-20.5.0
- refs/tags/galaxy-web-framework-20.9.0
- refs/tags/galaxy-web-stack-20.5.0
- refs/tags/v18.09
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- v24.1
- v24.0
- v23.2
- v23.1
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- v22.01.1
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- v21.09
- v21.05
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- v20.09
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- v19.05
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- v18.09
- v18.05
- v18.01
- v17.09
- v17.05
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- v16.10
- v16.07
- v16.04
- v16.01
- v15.10.2
- v15.10.1
- v15.10
- v15.07.1
- v15.07
- v15.05.2
- v15.05.1
- v15.05
- v15.03.4
- v15.03.3
- v15.03.2
- v15.03.1
- v15.03
- v15.01.4
- v15.01.3
- v15.01.2
- v15.01.1
- v15.01
- v14.10.3
- v14.10.2
- v14.10.1
- v14.10
- v14.08.1
- v14.08
- v14.06.1
- v14.06
- v14.04.1
- v14.04
- v14.02.1
- v14.02
- v13.11.1
- v13.11
- v13.08.1
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- v13.06.1
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- v13.04
- v13.02.1
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Tip revision: 438db6b26bd189a91369e88cc792884fbd5ea2c2 authored by Dannon Baker on 23 February 2015, 16:25:23 UTC
Clone .gitignore
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Tip revision: 438db6b
r_wrapper.sh
#!/bin/sh
### Run R providing the R script in $1 as standard input and passing
### the remaining arguments on the command line
# Function that writes a message to stderr and exits
fail()
{
echo "$@" >&2
exit 1
}
# Ensure R executable is found
which R > /dev/null || fail "'R' is required by this tool but was not found on path"
# Extract first argument
infile=$1; shift
# Ensure the file exists
test -f $infile || fail "R input file '$infile' does not exist"
# Invoke R passing file named by first argument to stdin
R --vanilla --slave $* < $infile