https://github.com/satijalab/seurat
Tip revision: 74905f1be2f14438e55b8cd3c96e89e6d13b4857 authored by Gesmira on 10 January 2024, 16:15:10 UTC
exclude tests for v4 compatability
exclude tests for v4 compatability
Tip revision: 74905f1
AnnotateAnchors.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/generics.R, R/integration.R
\name{AnnotateAnchors}
\alias{AnnotateAnchors}
\alias{AnnotateAnchors.default}
\alias{AnnotateAnchors.IntegrationAnchorSet}
\alias{AnnotateAnchors.TransferAnchorSet}
\title{Add info to anchor matrix}
\usage{
AnnotateAnchors(anchors, vars, slot, ...)
\method{AnnotateAnchors}{default}(
anchors,
vars = NULL,
slot = NULL,
object.list,
assay = NULL,
...
)
\method{AnnotateAnchors}{IntegrationAnchorSet}(
anchors,
vars = NULL,
slot = NULL,
object.list = NULL,
assay = NULL,
...
)
\method{AnnotateAnchors}{TransferAnchorSet}(
anchors,
vars = NULL,
slot = NULL,
reference = NULL,
query = NULL,
assay = NULL,
...
)
}
\arguments{
\item{anchors}{An \code{\link{AnchorSet}} object}
\item{vars}{Variables to pull for each object via FetchData}
\item{slot}{Slot to pull feature data for}
\item{...}{Arguments passed to other methods}
\item{object.list}{List of Seurat objects}
\item{assay}{Specify the Assay per object if annotating with expression data}
\item{reference}{Reference object used in \code{\link{FindTransferAnchors}}}
\item{query}{Query object used in \code{\link{FindTransferAnchors}}}
}
\value{
Returns the anchor dataframe with additional columns for annotation
metadata
}
\description{
Add info to anchor matrix
}
\concept{integration}