https://gitlab.com/januseriksen/pymbe
Tip revision: 23d7d556f8202d3b05c705d1e13d908f2a55d3f6 authored by Janus Juul Eriksen on 10 February 2017, 15:14:34 UTC
impl. new mpi_time_plot and added mpi timingss to print-out
impl. new mpi_time_plot and added mpi timingss to print-out
Tip revision: 23d7d55
inc_corr_e_rout.py
# -*- coding: utf-8 -*
#!/usr/bin/env python
#
# energy-related routines for inc-corr calcs.
# written by Janus J. Eriksen (jeriksen@uni-mainz.de), Fall 2016, Mainz, Germnay.
#
from mpi4py import MPI
import inc_corr_gen_rout
import inc_corr_orb_rout
import inc_corr_utils
import inc_corr_mpi
__author__ = 'Dr. Janus Juul Eriksen, JGU Mainz'
def energy_calc_mono_exp_ser(molecule,order,tup,n_tup,l_limit,u_limit,level):
#
string = {'drop': ''}
#
if (level == 'MACRO'):
#
end = n_tup[order-1]
#
elif (level == 'CORRE'):
#
end = len(tup[order-1])
#
counter = 0
#
for i in range(0,end):
#
# write string
#
if ((level == 'MACRO') or ((level == 'CORRE') and (len(tup[order-1][i]) == 1))):
#
counter += 1
#
inc_corr_orb_rout.orb_string(molecule,l_limit,u_limit,tup[order-1][i][0],string)
#
# run correlated calc
#
inc_corr_gen_rout.run_calc_corr(molecule,string['drop'],level)
#
# write tuple energy
#
tup[order-1][i].append(molecule['e_tmp'])
#
# print status
#
inc_corr_utils.print_status(float(counter)/float(n_tup[order-1]),level)
#
# error check
#
if (molecule['error'][0][-1]):
#
return molecule, tup
#
return molecule, tup
def energy_calc_mono_exp_par(molecule,order,tup,n_tup,l_limit,u_limit,level):
#
string = {'drop': ''}
#
# number of slaves
#
num_slaves = molecule['mpi_size'] - 1
#
# number of available slaves
#
slaves_avail = num_slaves
#
# define mpi message tags
#
tags = inc_corr_utils.enum('ready','done','exit','start')
#
# init job index
#
i = 0
#
# init stat counter
#
counter = 0
#
# wake up slaves
#
msg = {'task': 'energy_calc_mono_exp'}
#
molecule['mpi_comm'].bcast(msg,root=0)
#
while (slaves_avail >= 1):
#
# write string
#
if (i <= (n_tup[order-1]-1)): inc_corr_orb_rout.orb_string(molecule,l_limit,u_limit,tup[order-1][i][0],string)
#
# receive data dict
#
data = molecule['mpi_comm'].recv(source=MPI.ANY_SOURCE,tag=MPI.ANY_TAG,status=molecule['mpi_stat'])
#
# probe for source
#
source = molecule['mpi_stat'].Get_source()
#
# probe for tag
#
tag = molecule['mpi_stat'].Get_tag()
#
if (tag == tags.ready):
#
if (i <= (n_tup[order-1]-1)):
#
# store job index
#
string['index'] = i
#
# send string dict
#
molecule['mpi_comm'].send(string,dest=source,tag=tags.start)
#
# increment job index
#
i += 1
#
else:
#
molecule['mpi_comm'].send(None,dest=source,tag=tags.exit)
#
elif (tag == tags.done):
#
# write tuple energy
#
tup[order-1][data['index']].append(data['e_tmp'])
#
# increment stat counter
#
counter += 1
#
# print status
#
inc_corr_utils.print_status(float(counter)/float(n_tup[order-1]),level)
#
# error check
#
if (data['error']):
#
print('problem with slave '+str(source)+' in energy_calc_mono_exp_par --- aborting...')
#
molecule['error'][0].append(True)
#
return molecule, tup
#
elif (tag == tags.exit):
#
slaves_avail -= 1
#
return molecule, tup
def inc_corr_order(molecule,k,tup,energy):
#
for j in range(0,len(tup[k-1])):
#
for i in range(k-1,0,-1):
#
for l in range(0,len(tup[i-1])):
#
if (set(tup[i-1][l][0]) < set(tup[k-1][j][0])):
#
tup[k-1][j][1] -= tup[i-1][l][1]
#
e_tmp = 0.0
#
for j in range(0,len(tup[k-1])):
#
e_tmp += tup[k-1][j][1]
#
if (k > 1):
#
e_tmp += energy[k-2]
#
energy.append(e_tmp)
#
return energy