https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: 3ddbbded2f4ce4814b92750f42786326d6376897 authored by Luca Venturini on 03 April 2019, 17:12:23 UTC
Now Mikado compare seems to function correctly without completely pre-loading the index into memory (#166).
Now Mikado compare seems to function correctly without completely pre-loading the index into memory (#166).
Tip revision: 3ddbbde
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy>=1.16.0
networkx>=2
sqlalchemy>=1.3
sqlalchemy-utils
biopython>=1.70
intervaltree
pytest
pyfaidx
scikit-learn>=0.17.0
scipy>=1.0.0
frozendict
python-magic
drmaa
snakemake
docutils!=0.13.1
tabulate
ujson
simplejson
pandas
pytest-cov
pysam >= 0.15.1