wheel>=0.28.0
pyyaml
jsonschema>=3.0.1
cython>=0.25
numpy>=1.16.0
networkx>=2
sqlalchemy>=1.3
sqlalchemy-utils
biopython>=1.73
intervaltree
pytest
pyfaidx
scikit-learn>=0.17.0
scipy>=1.0.0
python-magic
drmaa
snakemake
docutils!=0.13.1
tabulate
msgpack>=0.5
ujson
pandas
jsonref
pysam>=0.15.1