https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: 6cc0abcd02b55d1e640dd5f69ffa416bbc6d4e22 authored by Luca Venturini on 03 May 2016, 14:27:45 UTC
Now BED12 files are checked for the presence of methionines inside the ORF if the ORF itself does not start with an ATG. Moreover, sequences not starting with an ATG are assigned a "frame".
Now BED12 files are checked for the presence of methionines inside the ORF if the ORF itself does not start with an ATG. Moreover, sequences not starting with an ATG are assigned a "frame".
Tip revision: 6cc0abc
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
Cython
cython
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.6
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0