https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: 6caadc18c7c06582ce663fe42da5f1c609e8503c authored by Luca Venturini on 16 January 2017, 23:40:53 UTC
Mikado now optionally performs the second clustering based only on exonic overlap (optionally, only CDS features can be considered for this step).
Mikado now optionally performs the second clustering based only on exonic overlap (optionally, only CDS features can be considered for this step).
Tip revision: 6caadc1
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.66
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0
frozendict
python-magic
drmaa
snakemake
docutils
tabulate
ujson
