biopython>=1.78
cython>=0.29.13
datrie>=0.8
decorator
docutils
drmaa
hypothesis
jsonschema
msgpack>=1.0.0
networkx>=2.3
numpy>=1.17.2
pandas>=1.0
pip
pysam>=0.15.3
pyyaml>=5.1.2
scipy>=1.3.1
six>=1.12.0
snakemake>=5.7.0
sqlalchemy>=1.3.9
sqlalchemy-utils>=0.34.1
tabulate>=0.8.5
pytest>=5.4.1
rapidjson>=1.0.0
intervaltree
toml>=0.10.0
tomlkit>=0.5.8
pyfaidx>=0.5.8
dataclasses; python_version < '3.7'
marshmallow
marshmallow-dataclass
typeguard  # Necessary for mashmallow apparently