https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: 670fe92c63170c0513a0f20c57515af92669d181 authored by Luca Venturini on 11 May 2018, 10:12:38 UTC
Now the TranscriptChecker raises InvalidTranscript errors instead of AssertionErrors, and therefore exceptions should be handled more gracefully (see #119). Likewise, Mikado util stats should now function correctly with GTFs full of invalid transcripts, as reported by Martin Vickers
Now the TranscriptChecker raises InvalidTranscript errors instead of AssertionErrors, and therefore exceptions should be handled more gracefully (see #119). Likewise, Mikado util stats should now function correctly with GTFs full of invalid transcripts, as reported by Martin Vickers
Tip revision: 670fe92
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.66
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0
frozendict
python-magic
drmaa
snakemake<4.0.0; python_version < "3.5"
snakemake; python_version >= "3.5"
docutils!=0.13.1
tabulate
ujson
simplejson
typing; python_version < "3.5"
