https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: a93435b4f06e63c8d00a8a1a01c87ce61440446b authored by Luca Venturini on 24 March 2017, 12:10:41 UTC
Switched to a sqlite3-based index for mikado compare, hopefully lowering loading times. This could also allow compare to be multi-processed, in time.
Switched to a sqlite3-based index for mikado compare, hopefully lowering loading times. This could also allow compare to be multi-processed, in time.
Tip revision: a93435b
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.66
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0
frozendict
python-magic
drmaa
snakemake
docutils!=0.13.1
tabulate
ujson
