https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: acc96229cf794e40492ef7d7fabd3119dc6ca522 authored by Luca Venturini on 17 January 2017, 18:57:09 UTC
Solved a bug which caused transcripts with non-verified introns to be classified as having all the verified introns in the locus. Implemented a test to catch the mistake in the future. Moreover, now verified introns are considered at the level of the superlocus, until we define the genes.
Solved a bug which caused transcripts with non-verified introns to be classified as having all the verified introns in the locus. Implemented a test to catch the mistake in the future. Moreover, now verified introns are considered at the level of the superlocus, until we define the genes.
Tip revision: acc9622
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.66
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0
frozendict
python-magic
drmaa
snakemake
docutils
tabulate
ujson
